Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44274.t1 | XP_003613092.2 | 96.9 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 2.40E-92 | 348.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44274.t1 | A2Z259 | 47.2 | 229 | 93 | 3 | 50 | 250 | 49 | 277 | 2.7e-47 | 190.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44274.t1 | G7JXR5 | 96.9 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 1.8e-92 | 348.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44274.t1 | TF | zf-HD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene44274 | 0.847494 | 1.12E-59 | -1.69E-46 |
| MS.gene049758 | MS.gene44274 | 0.835765 | 1.39E-56 | -1.69E-46 |
| MS.gene050128 | MS.gene44274 | 0.86392 | 1.76E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene44274 | 0.830395 | 3.01E-55 | -1.69E-46 |
| MS.gene050586 | MS.gene44274 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene44274 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene44274 | 0.847883 | 8.73E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene44274 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene44274 | 0.863687 | 2.08E-64 | -1.69E-46 |
| MS.gene052917 | MS.gene44274 | -0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene052967 | MS.gene44274 | 0.821733 | 3.45E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene44274 | 0.841868 | 3.66E-58 | -1.69E-46 |
| MS.gene053204 | MS.gene44274 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene44274 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene44274 | 0.824062 | 9.89E-54 | -1.69E-46 |
| MS.gene054010 | MS.gene44274 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene44274 | 0.823635 | 1.25E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene44274 | 0.817966 | 2.51E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene44274 | 0.817826 | 2.70E-52 | -1.69E-46 |
| MS.gene054184 | MS.gene44274 | 0.844834 | 5.91E-59 | -1.69E-46 |
| MS.gene054185 | MS.gene44274 | 0.851008 | 1.17E-60 | -1.69E-46 |
| MS.gene054214 | MS.gene44274 | 0.818205 | 2.21E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene44274 | 0.805056 | 1.61E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene44274 | 0.848372 | 6.39E-60 | -1.69E-46 |
| MS.gene055207 | MS.gene44274 | 0.844355 | 7.96E-59 | -1.69E-46 |
| MS.gene055422 | MS.gene44274 | 0.822836 | 1.91E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene44274 | 0.834684 | 2.60E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene44274 | -0.810658 | 1.03E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene44274 | 0.818398 | 2.00E-52 | -1.69E-46 |
| MS.gene057794 | MS.gene44274 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene44274 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene44274 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene44274 | 0.828028 | 1.13E-54 | -1.69E-46 |
| MS.gene059006 | MS.gene44274 | 0.81662 | 5.03E-52 | -1.69E-46 |
| MS.gene059228 | MS.gene44274 | 0.832527 | 8.99E-56 | -1.69E-46 |
| MS.gene059294 | MS.gene44274 | 0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene44274 | 0.821354 | 4.22E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene44274 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene44274 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene44274 | 0.8053 | 1.43E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene44274 | 0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene44274 | 0.838177 | 3.36E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene44274 | 0.82052 | 6.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44274.t1 | MTR_5g032600 | 96.875 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 0.0 | 503 |
| MS.gene44274.t1 | MTR_3g100650 | 55.714 | 210 | 70 | 6 | 54 | 251 | 76 | 274 | 1.57e-66 | 207 |
| MS.gene44274.t1 | MTR_5g065440 | 47.232 | 271 | 92 | 9 | 5 | 251 | 25 | 268 | 1.41e-64 | 202 |
| MS.gene44274.t1 | MTR_2g076780 | 44.017 | 234 | 120 | 4 | 27 | 250 | 4 | 236 | 8.42e-58 | 184 |
| MS.gene44274.t1 | MTR_8g069080 | 42.917 | 240 | 125 | 3 | 18 | 250 | 33 | 267 | 3.02e-56 | 181 |
| MS.gene44274.t1 | MTR_1g077020 | 45.274 | 201 | 83 | 5 | 56 | 250 | 7 | 186 | 8.20e-55 | 175 |
| MS.gene44274.t1 | MTR_7g010300 | 45.833 | 216 | 73 | 6 | 58 | 250 | 88 | 282 | 4.05e-52 | 172 |
| MS.gene44274.t1 | MTR_5g020510 | 42.254 | 213 | 93 | 4 | 55 | 250 | 96 | 295 | 1.68e-51 | 170 |
| MS.gene44274.t1 | MTR_4g134580 | 42.917 | 240 | 86 | 6 | 57 | 250 | 112 | 346 | 2.34e-51 | 171 |
| MS.gene44274.t1 | MTR_6g012280 | 49.246 | 199 | 90 | 4 | 58 | 250 | 91 | 284 | 8.22e-48 | 161 |
| MS.gene44274.t1 | MTR_6g073013 | 37.173 | 191 | 69 | 4 | 58 | 246 | 19 | 160 | 5.98e-33 | 118 |
| MS.gene44274.t1 | MTR_8g069380 | 58.427 | 89 | 30 | 3 | 170 | 251 | 27 | 115 | 7.37e-25 | 95.5 |
| MS.gene44274.t1 | MTR_8g051480 | 61.333 | 75 | 26 | 2 | 178 | 250 | 55 | 128 | 9.18e-23 | 90.5 |
| MS.gene44274.t1 | MTR_8g442330 | 33.121 | 157 | 72 | 3 | 69 | 225 | 16 | 139 | 2.99e-22 | 89.4 |
| MS.gene44274.t1 | MTR_8g467340 | 67.188 | 64 | 20 | 1 | 188 | 250 | 271 | 334 | 1.72e-21 | 92.4 |
| MS.gene44274.t1 | MTR_8g467340 | 71.154 | 52 | 13 | 1 | 58 | 107 | 64 | 115 | 5.20e-18 | 82.8 |
| MS.gene44274.t1 | MTR_3g039810 | 60.345 | 58 | 23 | 0 | 57 | 114 | 19 | 76 | 5.44e-19 | 79.3 |
| MS.gene44274.t1 | MTR_6g012220 | 58.824 | 51 | 17 | 1 | 56 | 106 | 19 | 65 | 5.00e-14 | 65.9 |
| MS.gene44274.t1 | MTR_7g070643 | 58.182 | 55 | 18 | 1 | 42 | 96 | 71 | 120 | 8.73e-12 | 62.4 |
| MS.gene44274.t1 | MTR_6g080300 | 45.312 | 64 | 30 | 1 | 33 | 96 | 34 | 92 | 6.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44274.t1 | AT4G24660 | 54.040 | 198 | 69 | 4 | 54 | 251 | 45 | 220 | 2.39e-67 | 207 |
| MS.gene44274.t1 | AT4G24660 | 53.093 | 194 | 69 | 4 | 54 | 247 | 45 | 216 | 2.39e-64 | 201 |
| MS.gene44274.t1 | AT5G65410 | 50.732 | 205 | 87 | 3 | 47 | 251 | 64 | 254 | 7.44e-62 | 196 |
| MS.gene44274.t1 | AT2G02540 | 45.024 | 211 | 87 | 5 | 57 | 250 | 86 | 284 | 9.99e-59 | 189 |
| MS.gene44274.t1 | AT2G02540 | 45.024 | 211 | 87 | 5 | 57 | 250 | 86 | 284 | 9.99e-59 | 189 |
| MS.gene44274.t1 | AT1G14440 | 44.878 | 205 | 89 | 5 | 57 | 250 | 89 | 280 | 1.04e-52 | 173 |
| MS.gene44274.t1 | AT1G14440 | 44.878 | 205 | 89 | 5 | 57 | 250 | 89 | 280 | 1.04e-52 | 173 |
| MS.gene44274.t1 | AT2G18350 | 46.078 | 204 | 82 | 5 | 54 | 250 | 78 | 260 | 1.94e-50 | 166 |
| MS.gene44274.t1 | AT1G69600 | 45.312 | 192 | 96 | 3 | 58 | 247 | 31 | 215 | 2.13e-46 | 155 |
| MS.gene44274.t1 | AT5G15210 | 47.959 | 196 | 81 | 3 | 56 | 244 | 54 | 235 | 2.68e-45 | 153 |
| MS.gene44274.t1 | AT5G60480 | 39.462 | 223 | 109 | 5 | 27 | 245 | 4 | 204 | 9.84e-44 | 147 |
| MS.gene44274.t1 | AT3G50890 | 42.857 | 203 | 89 | 5 | 56 | 249 | 58 | 242 | 2.04e-41 | 142 |
| MS.gene44274.t1 | AT5G39760 | 41.204 | 216 | 95 | 5 | 58 | 250 | 56 | 262 | 1.22e-40 | 142 |
| MS.gene44274.t1 | AT3G28920 | 40.670 | 209 | 102 | 4 | 55 | 247 | 49 | 251 | 1.79e-40 | 142 |
| MS.gene44274.t1 | AT5G42780 | 36.500 | 200 | 98 | 5 | 55 | 247 | 61 | 238 | 6.95e-28 | 107 |
| MS.gene44274.t1 | AT1G75240 | 75.000 | 52 | 13 | 0 | 56 | 107 | 74 | 125 | 9.79e-24 | 97.4 |
| MS.gene44274.t1 | AT1G74660 | 65.000 | 60 | 21 | 0 | 56 | 115 | 37 | 96 | 1.12e-23 | 92.0 |
| MS.gene44274.t1 | AT1G74660 | 64.407 | 59 | 21 | 0 | 56 | 114 | 37 | 95 | 1.09e-22 | 89.7 |
| MS.gene44274.t1 | AT3G28917 | 56.667 | 60 | 25 | 1 | 56 | 114 | 31 | 90 | 5.46e-18 | 77.0 |
| MS.gene44274.t1 | AT1G18835 | 55.932 | 59 | 23 | 1 | 56 | 114 | 24 | 79 | 5.11e-17 | 74.3 |
Find 71 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGGTATTTGCATGTTTC+TGG | 0.126936 | 5.4:-22839195 | MS.gene44274:CDS |
| GTTGGAGTTAGCTGAGAAAT+TGG | 0.240875 | 5.4:-22839004 | MS.gene44274:CDS |
| TTAACAACTCTTGATGAGTT+TGG | 0.309890 | 5.4:+22839585 | None:intergenic |
| CTTGCTTTACCGTCAACTTC+TGG | 0.335479 | 5.4:-22839153 | MS.gene44274:CDS |
| AGCGTCATGTTCTTAAGGTT+TGG | 0.351100 | 5.4:-22838918 | MS.gene44274:CDS |
| TCAGAAACATGATGAAGGTT+TGG | 0.379981 | 5.4:-22838971 | MS.gene44274:CDS |
| ATTGGTGGTCATGCTCTTGA+TGG | 0.382322 | 5.4:-22839408 | MS.gene44274:CDS |
| TGTTAAGCGTCATGTTCTTA+AGG | 0.403141 | 5.4:-22838923 | MS.gene44274:CDS |
| TTGGAGTTAGCTGAGAAATT+GGG | 0.451712 | 5.4:-22839003 | MS.gene44274:CDS |
| GTTTCTGGACAGCAGAGGAC+TGG | 0.452007 | 5.4:-22839180 | MS.gene44274:CDS |
| AGCAACATGGTTGGTGGTGT+TGG | 0.458102 | 5.4:-22839480 | MS.gene44274:CDS |
| GCTTATTATCGAACTCCAGC+AGG | 0.463384 | 5.4:-22839213 | MS.gene44274:CDS |
| ATGGTTGGTGGTGTTGGAAA+TGG | 0.467173 | 5.4:-22839474 | MS.gene44274:CDS |
| TGCGGTGAGTTTATGCCGGC+AGG | 0.468779 | 5.4:-22839384 | MS.gene44274:CDS |
| CCGTCAACTTCTGGTGGCGG+TGG | 0.471225 | 5.4:-22839144 | MS.gene44274:CDS |
| GGCAGGAAGTGAAGGAACTT+TGG | 0.482158 | 5.4:-22839367 | MS.gene44274:CDS |
| CATAACAACAAACACACTCT+TGG | 0.491859 | 5.4:-22838892 | MS.gene44274:CDS |
| ACCACCTCCTCCACAGTTCG+CGG | 0.495788 | 5.4:-22839235 | MS.gene44274:CDS |
| GCCGCGAACTGTGGAGGAGG+TGG | 0.503461 | 5.4:+22839234 | None:intergenic |
| AGTGGATGAGTGACCATGAT+AGG | 0.506193 | 5.4:+22839543 | None:intergenic |
| GCGAACTGTGGAGGAGGTGG+TGG | 0.508708 | 5.4:+22839237 | None:intergenic |
| AGAATTCAGAAACATGATGA+AGG | 0.509328 | 5.4:-22838976 | MS.gene44274:CDS |
| TCAACTTCTGGTGGCGGTGG+AGG | 0.510550 | 5.4:-22839141 | MS.gene44274:CDS |
| TCAAGAGTTGTTAAGATGCC+TGG | 0.513910 | 5.4:-22839576 | MS.gene44274:CDS |
| TGATGATGTGTCAACAGAAA+AGG | 0.515803 | 5.4:+22839264 | None:intergenic |
| AAGAATCATGCTGTAGGTAT+TGG | 0.519190 | 5.4:-22839426 | MS.gene44274:CDS |
| GTTCAAGCAAGAAGAGGCAT+AGG | 0.530566 | 5.4:-22839059 | MS.gene44274:CDS |
| AATCATGCTGTAGGTATTGG+TGG | 0.532401 | 5.4:-22839423 | MS.gene44274:CDS |
| GAAACATGCAAATACCCTGC+TGG | 0.534458 | 5.4:+22839198 | None:intergenic |
| CCACCGCCACCAGAAGTTGA+CGG | 0.538970 | 5.4:+22839144 | None:intergenic |
| TGGTGGAACTGAACCTATCA+TGG | 0.550765 | 5.4:-22839556 | MS.gene44274:CDS |
| AAAGTTCCTTCACTTCCTGC+CGG | 0.552211 | 5.4:+22839369 | None:intergenic |
| CGATAATAAGCCGCGAACTG+TGG | 0.552754 | 5.4:+22839225 | None:intergenic |
| TAATAAGCCGCGAACTGTGG+AGG | 0.552837 | 5.4:+22839228 | None:intergenic |
| GTTTCGAATCCAAGTGGTGG+GGG | 0.553938 | 5.4:-22839087 | MS.gene44274:CDS |
| TTACCGTCAACTTCTGGTGG+CGG | 0.554834 | 5.4:-22839147 | MS.gene44274:CDS |
| AAAATTCACGCAGGAACAGA+AGG | 0.559129 | 5.4:-22839034 | MS.gene44274:CDS |
| TAAGCCGCGAACTGTGGAGG+AGG | 0.562343 | 5.4:+22839231 | None:intergenic |
| GATGATGTGTCAACAGAAAA+GGG | 0.562574 | 5.4:+22839265 | None:intergenic |
| ATGTTTCGAATCCAAGTGGT+GGG | 0.566297 | 5.4:-22839089 | MS.gene44274:CDS |
| TTTCTGGACAGCAGAGGACT+GGG | 0.567641 | 5.4:-22839179 | MS.gene44274:CDS |
| GGAACAGAAGGATAAGATGT+TGG | 0.570619 | 5.4:-22839022 | MS.gene44274:CDS |
| GAAGAATTATGCATGGGTGG+AGG | 0.575918 | 5.4:-22839624 | None:intergenic |
| GGTCATGCTCTTGATGGTTG+CGG | 0.581532 | 5.4:-22839402 | MS.gene44274:CDS |
| GCTTTACCGTCAACTTCTGG+TGG | 0.583371 | 5.4:-22839150 | MS.gene44274:CDS |
| GTGGAGGTACGCAGAGTACG+AGG | 0.588222 | 5.4:-22839125 | MS.gene44274:CDS |
| AGTTAGCTGAGAAATTGGGT+TGG | 0.589225 | 5.4:-22838999 | MS.gene44274:CDS |
| TTTATGCCGGCAGGAAGTGA+AGG | 0.589438 | 5.4:-22839375 | MS.gene44274:CDS |
| ACTGTGGAGGAGGTGGTGGA+TGG | 0.597538 | 5.4:+22839241 | None:intergenic |
| TCATCGGCAGATGTTACTGC+CGG | 0.600307 | 5.4:-22839291 | MS.gene44274:CDS |
| TGTCAACAGAAAAGGGTCAC+CGG | 0.601235 | 5.4:+22839272 | None:intergenic |
| CTTCCACCGAAAAGAGTCAT+CGG | 0.604115 | 5.4:-22839307 | MS.gene44274:CDS |
| GATGTTTCGAATCCAAGTGG+TGG | 0.613273 | 5.4:-22839090 | MS.gene44274:CDS |
| TGGTTGCGGTGAGTTTATGC+CGG | 0.613273 | 5.4:-22839388 | MS.gene44274:CDS |
| AATGGAAACAGCAACATGGT+TGG | 0.615914 | 5.4:-22839489 | MS.gene44274:CDS |
| GAGGAAGAATTATGCATGGG+TGG | 0.618672 | 5.4:-22839627 | None:intergenic |
| CAAGAATTCTGTAATGAAAG+CGG | 0.619098 | 5.4:-22838946 | MS.gene44274:CDS |
| TTGTTAAGGATGTTTCTGAG+TGG | 0.621550 | 5.4:+22839525 | None:intergenic |
| TGTTTCGAATCCAAGTGGTG+GGG | 0.626357 | 5.4:-22839088 | MS.gene44274:CDS |
| TGTCTGAAGAATCATGCTGT+AGG | 0.629570 | 5.4:-22839432 | MS.gene44274:CDS |
| CAACAATGGAAACAGCAACA+TGG | 0.631699 | 5.4:-22839493 | MS.gene44274:CDS |
| GAAGTGGTTCAAGCAAGAAG+AGG | 0.635278 | 5.4:-22839065 | MS.gene44274:CDS |
| TGCATGTTTCTGGACAGCAG+AGG | 0.639645 | 5.4:-22839185 | MS.gene44274:CDS |
| GGAAACAGCAACATGGTTGG+TGG | 0.639744 | 5.4:-22839486 | MS.gene44274:CDS |
| ATGATAGGTTCAGTTCCACC+AGG | 0.642551 | 5.4:+22839558 | None:intergenic |
| CTTATTATCGAACTCCAGCA+GGG | 0.661447 | 5.4:-22839212 | MS.gene44274:CDS |
| AGAGTTGTTAAGATGCCTGG+TGG | 0.674556 | 5.4:-22839573 | MS.gene44274:CDS |
| GAAGATGTTTCGAATCCAAG+TGG | 0.685294 | 5.4:-22839093 | MS.gene44274:CDS |
| TGGAGGTACGCAGAGTACGA+GGG | 0.690082 | 5.4:-22839124 | MS.gene44274:CDS |
| GTGTTGGAAATGGAAAAGCA+AGG | 0.695951 | 5.4:-22839464 | MS.gene44274:CDS |
| GCATAGGACAAAATTCACGC+AGG | 0.713722 | 5.4:-22839043 | MS.gene44274:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACAACAACAACAACAACAA+TGG | - | chr5.4:22838984-22839003 | MS.gene44274:CDS | 30.0% | |
| AGAATTCAGAAACATGATGA+AGG | - | chr5.4:22839515-22839534 | MS.gene44274:CDS | 30.0% | |
| CAAGAATTCTGTAATGAAAG+CGG | - | chr5.4:22839545-22839564 | MS.gene44274:CDS | 30.0% | |
| TTAACAACTCTTGATGAGTT+TGG | + | chr5.4:22838909-22838928 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTGTTGTTGTTA+AGG | + | chr5.4:22838983-22839002 | None:intergenic | 30.0% |
| AAGAATCATGCTGTAGGTAT+TGG | - | chr5.4:22839065-22839084 | MS.gene44274:CDS | 35.0% | |
| CATAACAACAAACACACTCT+TGG | - | chr5.4:22839599-22839618 | MS.gene44274:CDS | 35.0% | |
| GATGATGTGTCAACAGAAAA+GGG | + | chr5.4:22839229-22839248 | None:intergenic | 35.0% | |
| TCAGAAACATGATGAAGGTT+TGG | - | chr5.4:22839520-22839539 | MS.gene44274:CDS | 35.0% | |
| TGTTAAGCGTCATGTTCTTA+AGG | - | chr5.4:22839568-22839587 | MS.gene44274:CDS | 35.0% | |
| TTGGAGTTAGCTGAGAAATT+GGG | - | chr5.4:22839488-22839507 | MS.gene44274:CDS | 35.0% | |
| ! | TGATGATGTGTCAACAGAAA+AGG | + | chr5.4:22839230-22839249 | None:intergenic | 35.0% |
| ! | TTGTTAAGGATGTTTCTGAG+TGG | + | chr5.4:22838969-22838988 | None:intergenic | 35.0% |
| AAAATTCACGCAGGAACAGA+AGG | - | chr5.4:22839457-22839476 | MS.gene44274:CDS | 40.0% | |
| AATGGAAACAGCAACATGGT+TGG | - | chr5.4:22839002-22839021 | MS.gene44274:CDS | 40.0% | |
| AGCGTCATGTTCTTAAGGTT+TGG | - | chr5.4:22839573-22839592 | MS.gene44274:CDS | 40.0% | |
| AGTTAGCTGAGAAATTGGGT+TGG | - | chr5.4:22839492-22839511 | MS.gene44274:CDS | 40.0% | |
| ATGTTTCGAATCCAAGTGGT+GGG | - | chr5.4:22839402-22839421 | MS.gene44274:CDS | 40.0% | |
| CAACAATGGAAACAGCAACA+TGG | - | chr5.4:22838998-22839017 | MS.gene44274:CDS | 40.0% | |
| CTTATTATCGAACTCCAGCA+GGG | - | chr5.4:22839279-22839298 | MS.gene44274:CDS | 40.0% | |
| GAAGATGTTTCGAATCCAAG+TGG | - | chr5.4:22839398-22839417 | MS.gene44274:CDS | 40.0% | |
| GGAACAGAAGGATAAGATGT+TGG | - | chr5.4:22839469-22839488 | MS.gene44274:CDS | 40.0% | |
| GTGTTGGAAATGGAAAAGCA+AGG | - | chr5.4:22839027-22839046 | MS.gene44274:CDS | 40.0% | |
| GTTGGAGTTAGCTGAGAAAT+TGG | - | chr5.4:22839487-22839506 | MS.gene44274:CDS | 40.0% | |
| TCAAGAGTTGTTAAGATGCC+TGG | - | chr5.4:22838915-22838934 | MS.gene44274:CDS | 40.0% | |
| TGTCTGAAGAATCATGCTGT+AGG | - | chr5.4:22839059-22839078 | MS.gene44274:CDS | 40.0% | |
| ! | ACTCTTTTCGGTGGAAGTTA+CGG | + | chr5.4:22839181-22839200 | None:intergenic | 40.0% |
| !! | AATCATGCTGTAGGTATTGG+TGG | - | chr5.4:22839068-22839087 | MS.gene44274:CDS | 40.0% |
| AAAGTTCCTTCACTTCCTGC+CGG | + | chr5.4:22839125-22839144 | None:intergenic | 45.0% | |
| AGAGTTGTTAAGATGCCTGG+TGG | - | chr5.4:22838918-22838937 | MS.gene44274:CDS | 45.0% | |
| AGTGGATGAGTGACCATGAT+AGG | + | chr5.4:22838951-22838970 | None:intergenic | 45.0% | |
| ATGATAGGTTCAGTTCCACC+AGG | + | chr5.4:22838936-22838955 | None:intergenic | 45.0% | |
| CTTCCACCGAAAAGAGTCAT+CGG | - | chr5.4:22839184-22839203 | MS.gene44274:CDS | 45.0% | |
| CTTGCTTTACCGTCAACTTC+TGG | - | chr5.4:22839338-22839357 | MS.gene44274:CDS | 45.0% | |
| GAAACATGCAAATACCCTGC+TGG | + | chr5.4:22839296-22839315 | None:intergenic | 45.0% | |
| GAAGTGGTTCAAGCAAGAAG+AGG | - | chr5.4:22839426-22839445 | MS.gene44274:CDS | 45.0% | |
| GATGTTTCGAATCCAAGTGG+TGG | - | chr5.4:22839401-22839420 | MS.gene44274:CDS | 45.0% | |
| GCATAGGACAAAATTCACGC+AGG | - | chr5.4:22839448-22839467 | MS.gene44274:CDS | 45.0% | |
| GCTTATTATCGAACTCCAGC+AGG | - | chr5.4:22839278-22839297 | MS.gene44274:CDS | 45.0% | |
| TGGTGGAACTGAACCTATCA+TGG | - | chr5.4:22838935-22838954 | MS.gene44274:CDS | 45.0% | |
| TGTCAACAGAAAAGGGTCAC+CGG | + | chr5.4:22839222-22839241 | None:intergenic | 45.0% | |
| TGTTTCGAATCCAAGTGGTG+GGG | - | chr5.4:22839403-22839422 | MS.gene44274:CDS | 45.0% | |
| ! | ATTGGTGGTCATGCTCTTGA+TGG | - | chr5.4:22839083-22839102 | MS.gene44274:CDS | 45.0% |
| ! | CATCTGCCGATGACTCTTTT+CGG | + | chr5.4:22839193-22839212 | None:intergenic | 45.0% |
| ! | GCAGGGTATTTGCATGTTTC+TGG | - | chr5.4:22839296-22839315 | MS.gene44274:CDS | 45.0% |
| ! | GTTCAAGCAAGAAGAGGCAT+AGG | - | chr5.4:22839432-22839451 | MS.gene44274:CDS | 45.0% |
| !! | ATGGTTGGTGGTGTTGGAAA+TGG | - | chr5.4:22839017-22839036 | MS.gene44274:CDS | 45.0% |
| CGATAATAAGCCGCGAACTG+TGG | + | chr5.4:22839269-22839288 | None:intergenic | 50.0% | |
| GCTTTACCGTCAACTTCTGG+TGG | - | chr5.4:22839341-22839360 | MS.gene44274:CDS | 50.0% | |
| GGAAACAGCAACATGGTTGG+TGG | - | chr5.4:22839005-22839024 | MS.gene44274:CDS | 50.0% | |
| GGCAGGAAGTGAAGGAACTT+TGG | - | chr5.4:22839124-22839143 | MS.gene44274:CDS | 50.0% | |
| GTTTCGAATCCAAGTGGTGG+GGG | - | chr5.4:22839404-22839423 | MS.gene44274:CDS | 50.0% | |
| TAATAAGCCGCGAACTGTGG+AGG | + | chr5.4:22839266-22839285 | None:intergenic | 50.0% | |
| TCATCGGCAGATGTTACTGC+CGG | - | chr5.4:22839200-22839219 | MS.gene44274:CDS | 50.0% | |
| TGGTTGCGGTGAGTTTATGC+CGG | - | chr5.4:22839103-22839122 | MS.gene44274:CDS | 50.0% | |
| TTACCGTCAACTTCTGGTGG+CGG | - | chr5.4:22839344-22839363 | MS.gene44274:CDS | 50.0% | |
| TTTATGCCGGCAGGAAGTGA+AGG | - | chr5.4:22839116-22839135 | MS.gene44274:CDS | 50.0% | |
| TTTCTGGACAGCAGAGGACT+GGG | - | chr5.4:22839312-22839331 | MS.gene44274:CDS | 50.0% | |
| ! | CTTTTCGGTGGAAGTTACGG+TGG | + | chr5.4:22839178-22839197 | None:intergenic | 50.0% |
| ! | GGTCATGCTCTTGATGGTTG+CGG | - | chr5.4:22839089-22839108 | MS.gene44274:CDS | 50.0% |
| !! | AGCAACATGGTTGGTGGTGT+TGG | - | chr5.4:22839011-22839030 | MS.gene44274:CDS | 50.0% |
| !! | TGCATGTTTCTGGACAGCAG+AGG | - | chr5.4:22839306-22839325 | MS.gene44274:CDS | 50.0% |
| ! | AATCCAAGTGGTGGGGGAAG+TGG | - | chr5.4:22839410-22839429 | MS.gene44274:CDS | 55.0% |
| ! | CTGCCGATGACTCTTTTCGG+TGG | + | chr5.4:22839190-22839209 | None:intergenic | 55.0% |
| ! | GTTTCTGGACAGCAGAGGAC+TGG | - | chr5.4:22839311-22839330 | MS.gene44274:CDS | 55.0% |
| ! | TGGAGGTACGCAGAGTACGA+GGG | - | chr5.4:22839367-22839386 | MS.gene44274:CDS | 55.0% |
| ACCACCTCCTCCACAGTTCG+CGG | - | chr5.4:22839256-22839275 | MS.gene44274:CDS | 60.0% | |
| CCACCGCCACCAGAAGTTGA+CGG | + | chr5.4:22839350-22839369 | None:intergenic | 60.0% | |
| GAACCACTTCCCCCACCACT+TGG | + | chr5.4:22839416-22839435 | None:intergenic | 60.0% | |
| TAAGCCGCGAACTGTGGAGG+AGG | + | chr5.4:22839263-22839282 | None:intergenic | 60.0% | |
| TGCGGTGAGTTTATGCCGGC+AGG | - | chr5.4:22839107-22839126 | MS.gene44274:CDS | 60.0% | |
| ! | GTGGAGGTACGCAGAGTACG+AGG | - | chr5.4:22839366-22839385 | MS.gene44274:CDS | 60.0% |
| !! | ACTGTGGAGGAGGTGGTGGA+TGG | + | chr5.4:22839253-22839272 | None:intergenic | 60.0% |
| !! | TCAACTTCTGGTGGCGGTGG+AGG | - | chr5.4:22839350-22839369 | MS.gene44274:CDS | 60.0% |
| GCGAACTGTGGAGGAGGTGG+TGG | + | chr5.4:22839257-22839276 | None:intergenic | 65.0% | |
| !! | CCGTCAACTTCTGGTGGCGG+TGG | - | chr5.4:22839347-22839366 | MS.gene44274:CDS | 65.0% |
| GCCGCGAACTGTGGAGGAGG+TGG | + | chr5.4:22839260-22839279 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22838879 | 22839634 | 22838879 | ID=MS.gene44274 |
| chr5.4 | mRNA | 22838879 | 22839634 | 22838879 | ID=MS.gene44274.t1;Parent=MS.gene44274 |
| chr5.4 | exon | 22838879 | 22839634 | 22838879 | ID=MS.gene44274.t1.exon1;Parent=MS.gene44274.t1 |
| chr5.4 | CDS | 22838879 | 22839634 | 22838879 | ID=cds.MS.gene44274.t1;Parent=MS.gene44274.t1 |
| Gene Sequence |
| Protein sequence |
