AlfalfaGEDB | MS.gene44521

M. sativa cultivar XinJiangDaYe / MS.gene44521

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44521.t1	XP_024637902.1	83.2	847	99	6	1	806	1	845	0.00E+00	1369

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44521.t1	O22187	43.7	860	382	21	8	806	16	834	8.8e-169	595.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44521.t1	A0A072UP99	80.4	847	97	7	1	806	1	819	0.0e+00	1306.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene44521	0.803615	3.20E-49	-1.69E-46
MS.gene049993	MS.gene44521	0.809017	2.33E-50	-1.69E-46
MS.gene050426	MS.gene44521	-0.801542	8.57E-49	-1.69E-46
MS.gene050670	MS.gene44521	0.842051	3.27E-58	-1.69E-46
MS.gene051208	MS.gene44521	0.806813	6.85E-50	-1.69E-46
MS.gene051387	MS.gene44521	0.829761	4.30E-55	-1.69E-46
MS.gene051525	MS.gene44521	0.871032	9.30E-67	-1.69E-46
MS.gene051582	MS.gene44521	0.873317	1.62E-67	-1.69E-46
MS.gene051588	MS.gene44521	0.846525	2.06E-59	-1.69E-46
MS.gene051980	MS.gene44521	0.811853	5.69E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene030390	MS.gene44521	PPI
MS.gene048810	MS.gene44521	PPI
MS.gene72138	MS.gene44521	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene44521.t1	MTR_4g095012	80.401	847	97	7	1	806	1	819	1345
MS.gene44521.t1	MTR_4g095042	69.140	849	199	17	1	803	1	832	1094
MS.gene44521.t1	MTR_4g095032	69.145	807	211	14	1	803	1	773	1071
MS.gene44521.t1	MTR_4g095045	62.798	672	178	9	175	804	1	642	797
MS.gene44521.t1	MTR_4g095018	69.468	583	127	12	2	541	8	582	737
MS.gene44521.t1	MTR_4g095022	67.061	507	119	10	1	463	1	503	622
MS.gene44521.t1	MTR_6g048090	46.265	763	338	17	31	738	29	774	612
MS.gene44521.t1	MTR_4g061833	41.781	876	396	19	4	806	6	840	595
MS.gene44521.t1	MTR_4g061930	41.781	876	396	19	4	806	6	840	595
MS.gene44521.t1	MTR_2g096160	42.414	870	394	21	7	806	15	847	588

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44521.t1	AT2G23200	43.721	860	382	22	8	806	16	834	0.0	605
MS.gene44521.t1	AT5G24010	44.000	800	356	20	9	749	11	777	0.0	591
MS.gene44521.t1	AT5G59700	43.516	802	358	21	9	752	8	772	0.0	559
MS.gene44521.t1	AT3G46290	41.885	838	387	24	31	806	31	830	0.0	558
MS.gene44521.t1	AT2G21480	43.750	784	349	21	22	740	47	803	0.0	557
MS.gene44521.t1	AT4G39110	42.929	799	338	21	32	753	59	816	0.0	552
MS.gene44521.t1	AT5G61350	41.451	813	358	24	31	751	34	820	1.04e-179	537
MS.gene44521.t1	AT2G39360	40.183	764	372	20	31	738	31	765	4.99e-170	511
MS.gene44521.t1	AT1G30570	37.559	852	408	22	9	770	12	829	1.85e-167	506
MS.gene44521.t1	AT5G28680	38.969	834	383	23	8	746	7	809	2.92e-161	490

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Find 164 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTGAGCCAGGGTC+AGG	0.467152	8.1:+26126325	MS.gene44521:CDS
AAACATCGTCTTAACGTCGG+TGG	0.677789	8.1:+26125401	MS.gene44521:CDS
AAATCTATCTGGCATCATCA+AGG	0.581570	8.1:-26127266	None:intergenic
AAATCTGATGTGTATTCATT+CGG	0.446043	8.1:+26126787	MS.gene44521:CDS
AAATTCAACGTTTCTGTTCC+CGG	0.339246	8.1:+26125113	MS.gene44521:CDS
AACAGGTGAACTTAGCTCAG+TGG	0.670917	8.1:+26126869	MS.gene44521:CDS
AACTTGGAGTGTTCCTGTGG+AGG	0.602444	8.1:+26125646	MS.gene44521:CDS
AAGAGGATAATTGGAAAGGG+TGG	0.581428	8.1:+26126250	MS.gene44521:CDS
AAGATGCCGATGACGAATCT+TGG	0.406842	8.1:-26126389	None:intergenic
AAGGTTGTAAGTAGACCCTG+TGG	0.716857	8.1:-26125719	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAGGGATTAAATGAACT+GGG	-	chr8.1:26125295-26125314	None:intergenic	30.0%
AATGGAAAATCCTTGTAGTT+TGG	-	chr8.1:26124995-26125014	None:intergenic	30.0%
ACTGCTAAAGAGAGTAAAAA+CGG	+	chr8.1:26125605-26125624	MS.gene44521:CDS	30.0%
AGAATACTGATCATTTCCTT+AGG	+	chr8.1:26125672-26125691	MS.gene44521:CDS	30.0%
AGCCCATTTAAAAATGCATT+CGG	-	chr8.1:26125899-26125918	None:intergenic	30.0%
ATGACATGTCTATGTCTATT+GGG	+	chr8.1:26127190-26127209	MS.gene44521:CDS	30.0%
ATTAGTTAACAGAAGGAAAC+CGG	-	chr8.1:26125135-26125154	None:intergenic	30.0%
ATTTGTACCAAGATTCAGAA+TGG	-	chr8.1:26125013-26125032	None:intergenic	30.0%
CAAAGGCTTGAAATTTGTAT+TGG	+	chr8.1:26126535-26126554	MS.gene44521:CDS	30.0%
CATCGAAATTAGTTAACAGA+AGG	-	chr8.1:26125142-26125161	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	26124753	26127284	26124753	ID=MS.gene44521
chr8.1	mRNA	26124753	26127284	26124753	ID=MS.gene44521.t1;Parent=MS.gene44521
chr8.1	exon	26124753	26125979	26124753	ID=MS.gene44521.t1.exon1;Parent=MS.gene44521.t1
chr8.1	CDS	26124753	26125979	26124753	ID=cds.MS.gene44521.t1;Parent=MS.gene44521.t1
chr8.1	exon	26126091	26127284	26126091	ID=MS.gene44521.t1.exon2;Parent=MS.gene44521.t1
chr8.1	CDS	26126091	26127284	26126091	ID=cds.MS.gene44521.t1;Parent=MS.gene44521.t1

Gene Sequence

>MS.gene44521

ATGGCAGTTCAAAACTCTATCATTTTACTAATTTTTCTTCTTCAATTCTCATCATTATACTTCCCCTCTATCGGATACAACGAACAAGGTTACTTCATCAGTTGTGGATCACAAAACAATGTTACTAATGAAAGTAACAAAGTTTATATAGGAGAATCTCAACATCATATTTACCCTAAAACAAGTTTCAGCAAAAGCTCCATAGAAACAAATCAATCATCCGTTCCTTCATCTCTCTACCAAACTACAAGGATTTTCCATTCTGAATCTTGGTACAAATTCAATACCATCCCAAACAACACCTACATGGTACGTTTCCATTTCTTTTCATTCTCTTCACCAACTAACCTTTCCACTGCAAAATTCAACGTTTCTGTTCCCGGTTTCCTTCTGTTAACTAATTTCGATGCTAAAAACACCACCAACTCTCCTTTAGTAAAAGAGTATTACGTTAAAATCAACATTACCACATTCAAAATCACTTTCACGCCTCAAAAATCATCATTCGCGTTTGTTAACGCAATAGAACTATTTGTGCTCCCAGTTCATTTAATCCCTGATTCAATGTCGCCCTTTACTTACAAAGAATCTAGTGCTCCAGGCTTATCTAATTATAGTGGCGGTTTACTCTCACGAGCTTTGGAAACCAAACATCGTCTTAACGTCGGTGGCCAAACAGTCGATAGAGGAACCGATACTTTATGGAGAGAATGGTTACCTGATGACAGTTATATAACTACTCCACAAAACGCTCAGAATAGTCCCTCTTTTGCAGGTATTAAAAGCATTGAAAATGATAAAATTGATGGTATATACTCAAATATATATATTGCTCCAGATATTGTTTATCAAACTGCTAAAGAGAGTAAAAACGGTTCTAAAGGTTTAAACATAACTTGGAGTGTTCCTGTGGAGGAGAAGAATACTGATCATTTCCTTAGGCTTCACTTTTGCGACAATTTTAATCCACAGGGTCTACTTACAACCTTTAATCTTTACATTTATGACCAGTATGTTATGCATATAAATAATTACACAGCTGTGTCTTCTCCTTATCATTATGATTTTGTGGTTCGTTCCGATGGCTCTGGGCTATTGAAGGTTACAATTATACCTATTAATGATACGGAAATATCTGCCAAACCGAATGCATTTTTAAATGGGCTAGAACTAATGGAAGTGATTGAACAATCTAGTGAAATTCCCCCAGATGATATGGATTCGAAGGTTAGTCTTCCTGTGGTGGTGGGTTCGGTTGTTGGAGGTTTAGTTTTGGTTTCGGTTGTGGTGGTTTTGTTTCTTTGGATTAGTAAAATCAGGAAACAAAGGTCCGTTGAGAATTCTGAATGGTTGCCGATTCCAGCAGCCAGAGGAGGGAGTTCTCACAGCAGATTAACTGATGCAACAACAATTCAAGGCTCACCTTTACCTAACATAAACCTTGGATTGAAAATCCCCTTGCTTGATCTTCAATTTGCAACTGATAATTTCGATGCGAAGAGGATAATTGGAAAGGGTGGTTTTGGAATTGTTTATAAGGGAGCTCTCAGGAATGGAGTTAGTGTTGCAGTGAAAAGAAGTGAGCCAGGGTCAGGTCAAGGACTACCTGAATTTCAGACTGAGATAATGGTTTTGTCCAAGATTCGTCATCGGCATCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAGATGATACTTGTTTATGAGTACATGGAAAAGGGGACACTTAAAGATAGTTTGTACGGTGCAAATTTGCCTAGTTTCTTGACTTGGAAGCAAAGGCTTGAAATTTGTATTGGTGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGCAGCTGGTGGAATCATTCACCGCGATGTGAAATCCACAAACATATTGCTTGATGAGTGTCTTGTAGCTAAAGTTGCTGATTTTGGTCTCTCAAGAACTGGTCCTCTTGATCAGCATTCTTATGTCAGCACAGGTGTTAAGGGAACTTTCGGGTATCTCGATCCTGAGTACTTTAGATCACAACAGCTTACAGAAAAATCTGATGTGTATTCATTCGGCGTGGTTCTACTTGAAGTTTTGTGTGCAAGGCCAGCCATTGAACCGTCGCTTCCAAGGGAACAGGTGAACTTAGCTCAGTGGGGAATTTTTTGCAAAGATAAAGGGCTATTGGAAGATATCATTGATCCTTCCATCAAGGGACAAATTGATCCAAACTCACTTAGAAAGTTTAGTGAGATAGTTGAAAAATGCTTACAAGATGATGGTTGTGATAGGCCTTCAATGGGTGATGTTTTGTGGGACTTGGAATATTCTTTGCAGCTTCAGAGAGGTGCGATACATAGAGAACCACATGAAGACAGTTCCAACAGTGCTTCTGTATCAATTCAATTGCCCAATGTTCGCCGTTTGCCTTCTCTGTCTACACTGAGTGAAGTGGATGACATGTCTATGTCTATTGGGAGGGTTATGGATGAATCTGATGGTGCAGCACATTCTGTTTTCTCTCAGTTGAACCTTGATGATGCCAGATAG

Protein sequence

>MS.gene44521.t1

MAVQNSIILLIFLLQFSSLYFPSIGYNEQGYFISCGSQNNVTNESNKVYIGESQHHIYPKTSFSKSSIETNQSSVPSSLYQTTRIFHSESWYKFNTIPNNTYMVRFHFFSFSSPTNLSTAKFNVSVPGFLLLTNFDAKNTTNSPLVKEYYVKINITTFKITFTPQKSSFAFVNAIELFVLPVHLIPDSMSPFTYKESSAPGLSNYSGGLLSRALETKHRLNVGGQTVDRGTDTLWREWLPDDSYITTPQNAQNSPSFAGIKSIENDKIDGIYSNIYIAPDIVYQTAKESKNGSKGLNITWSVPVEEKNTDHFLRLHFCDNFNPQGLLTTFNLYIYDQYVMHINNYTAVSSPYHYDFVVRSDGSGLLKVTIIPINDTEISAKPNAFLNGLELMEVIEQSSEIPPDDMDSKNSEWLPIPAARGGSSHSRLTDATTIQGSPLPNINLGLKIPLLDLQFATDNFDAKRIIGKGGFGIVYKGALRNGVSVAVKRSEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERYEMILVYEYMEKGTLKDSLYGANLPSFLTWKQRLEICIGAARGLHYLHKGAAGGIIHRDVKSTNILLDECLVAKVADFGLSRTGPLDQHSYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPAIEPSLPREQVNLAQWGIFCKDKGLLEDIIDPSIKGQIDPNSLRKFSEIVEKCLQDDGCDRPSMGDVLWDLEYSLQLQRGAIHREPHEDSSNSASVSIQLPNVRRLPSLSTLSEVDDMSMSIGRVMDESDGAAHSVFSQLNLDDAR