Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45524.t1 | XP_003597378.1 | 78.6 | 187 | 40 | 0 | 1 | 187 | 1 | 187 | 6.50E-50 | 207.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45524.t1 | G7IRV6 | 78.6 | 187 | 40 | 0 | 1 | 187 | 1 | 187 | 4.7e-50 | 207.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene45524 | 0.84101 | 6.16E-58 | -1.69E-46 |
| MS.gene049419 | MS.gene45524 | -0.813975 | 1.95E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene45524 | 0.817786 | 2.75E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene45524 | 0.808977 | 2.38E-50 | -1.69E-46 |
| MS.gene04973 | MS.gene45524 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene45524 | 0.813326 | 2.71E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene45524 | 0.809718 | 1.65E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene45524 | 0.818493 | 1.90E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene45524 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene45524 | 0.802113 | 6.54E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene45524 | 0.817023 | 4.09E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene45524 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene45524 | 0.807675 | 4.50E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene45524 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene053006 | MS.gene45524 | 0.822651 | 2.11E-53 | -1.69E-46 |
| MS.gene05365 | MS.gene45524 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene45524 | 0.802202 | 6.28E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene45524 | 0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene45524 | 0.82498 | 6.01E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene45524 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene45524 | 0.831069 | 2.06E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene45524 | 0.834121 | 3.60E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene45524 | 0.806602 | 7.60E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene45524 | 0.837996 | 3.74E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene45524 | 0.830742 | 2.47E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene45524 | 0.834835 | 2.38E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene45524 | 0.849573 | 2.97E-60 | -1.69E-46 |
| MS.gene056776 | MS.gene45524 | 0.828943 | 6.79E-55 | -1.69E-46 |
| MS.gene056779 | MS.gene45524 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene45524 | 0.8017 | 7.96E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene45524 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene45524 | 0.845675 | 3.50E-59 | -1.69E-46 |
| MS.gene057371 | MS.gene45524 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene45524 | 0.800657 | 1.30E-48 | -1.69E-46 |
| MS.gene057611 | MS.gene45524 | 0.811842 | 5.72E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene45524 | 0.805213 | 1.49E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene45524 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene45524 | 0.824965 | 6.06E-54 | -1.69E-46 |
| MS.gene05897 | MS.gene45524 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene45524 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene45524 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene060259 | MS.gene45524 | 0.81371 | 2.23E-51 | -1.69E-46 |
| MS.gene060520 | MS.gene45524 | 0.800214 | 1.60E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene45524 | 0.804835 | 1.79E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene45524 | 0.817323 | 3.50E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene45524 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene45524 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene45524 | 0.805491 | 1.30E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene45524 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene45524 | 0.809796 | 1.59E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene45524 | 0.810985 | 8.78E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45524.t1 | MTR_2g097480 | 97.326 | 187 | 5 | 0 | 1 | 187 | 1 | 187 | 6.33e-131 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45524.t1 | AT5G59460 | 46.154 | 182 | 78 | 6 | 1 | 179 | 1 | 165 | 8.93e-36 | 123 |
| MS.gene45524.t1 | AT5G59460 | 57.831 | 83 | 33 | 1 | 1 | 83 | 1 | 81 | 3.56e-26 | 97.4 |
Find 29 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCAACAATTTCTAGAAAA+TGG | 0.228195 | 2.1:+6534703 | MS.gene45524:CDS |
| CCCCGTCCTGGAGCATTTAA+AGG | 0.280597 | 2.1:+6536409 | MS.gene45524:CDS |
| ATTACTAGAAATGCTAGTTT+TGG | 0.306488 | 2.1:-6536612 | None:intergenic |
| GTCAAGCATGATGTTAGTTT+TGG | 0.309266 | 2.1:+6534675 | MS.gene45524:CDS |
| AGGTCAATGGAAATGGTAAA+AGG | 0.355567 | 2.1:+6536923 | MS.gene45524:CDS |
| ATCATCGCCGAACAATGGTT+TGG | 0.369184 | 2.1:+6537014 | MS.gene45524:CDS |
| ACCTTTAAATGCTCCAGGAC+GGG | 0.395840 | 2.1:-6536410 | None:intergenic |
| TTGTTCCCTTGATCATTGTT+TGG | 0.402209 | 2.1:-6536988 | None:intergenic |
| TCATTGTTTGGTGATTTGTT+AGG | 0.413961 | 2.1:-6536976 | None:intergenic |
| TCATCGCCGAACAATGGTTT+GGG | 0.420942 | 2.1:+6537015 | MS.gene45524:CDS |
| AGTTATGAGGTCAATGGAAA+TGG | 0.437837 | 2.1:+6536916 | MS.gene45524:CDS |
| AAAGAACCCAAACCATTGTT+CGG | 0.446315 | 2.1:-6537021 | None:intergenic |
| TAACTCTTCAGCAGAAGGTT+CGG | 0.461542 | 2.1:+6536870 | MS.gene45524:CDS |
| GTGGAAGGTGATCCCCGTCC+TGG | 0.465496 | 2.1:+6536397 | MS.gene45524:CDS |
| AAATCACCAAACAATGATCA+AGG | 0.473290 | 2.1:+6536982 | MS.gene45524:CDS |
| AAAATGCAAATGTGTCTGTT+AGG | 0.477260 | 2.1:+6536636 | MS.gene45524:CDS |
| GGTTGAGAAAGTAGAAGAAG+AGG | 0.492676 | 2.1:+6534653 | MS.gene45524:CDS |
| CGTCTGGAGATAAGCTAGAC+TGG | 0.504379 | 2.1:+6537052 | MS.gene45524:CDS |
| CCTTTAAATGCTCCAGGACG+GGG | 0.512790 | 2.1:-6536409 | None:intergenic |
| GAAAATAACTCTTCAGCAGA+AGG | 0.521915 | 2.1:+6536865 | MS.gene45524:CDS |
| AGCAGCTGCAAGAGAAGAGA+AGG | 0.531266 | 2.1:+6534632 | MS.gene45524:CDS |
| TTCAAACTCACATCAACAGT+TGG | 0.532123 | 2.1:-6536457 | None:intergenic |
| ATTCGACCTTTAAATGCTCC+AGG | 0.549316 | 2.1:-6536415 | None:intergenic |
| GCCTTTGTAGAAATTAAATG+AGG | 0.551548 | 2.1:+6536562 | MS.gene45524:intron |
| GACCTTTAAATGCTCCAGGA+CGG | 0.557661 | 2.1:-6536411 | None:intergenic |
| TATATGTAGTGTGGTCATAG+TGG | 0.558579 | 2.1:+6536378 | MS.gene45524:intron |
| CAGTCTAGCTTATCTCCAGA+CGG | 0.569006 | 2.1:-6537051 | None:intergenic |
| AATCACCAAACAATGATCAA+GGG | 0.631099 | 2.1:+6536983 | MS.gene45524:CDS |
| TGTAGTGTGGTCATAGTGGA+AGG | 0.671991 | 2.1:+6536382 | MS.gene45524:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTAATGCATAT+GGG | + | chr2.1:6534761-6534780 | MS.gene45524:intron | 10.0% |
| !!! | TTTTTATTTTTTAATGCATA+TGG | + | chr2.1:6534760-6534779 | MS.gene45524:intron | 10.0% |
| !! | AAAGATTTGTCAAATATATA+GGG | - | chr2.1:6536212-6536231 | None:intergenic | 15.0% |
| !! | ATGAAAATTTGAATTTATCT+TGG | + | chr2.1:6534894-6534913 | MS.gene45524:intron | 15.0% |
| !!! | TGCTATTTTATAATGTAAAA+AGG | - | chr2.1:6536236-6536255 | None:intergenic | 15.0% |
| !! | AAAAATCAACAATAACGATT+TGG | - | chr2.1:6534489-6534508 | None:intergenic | 20.0% |
| !! | AAAATCAACAATAACGATTT+GGG | - | chr2.1:6534488-6534507 | None:intergenic | 20.0% |
| !! | AAAATCTGTAAATTGATATC+GGG | - | chr2.1:6535495-6535514 | None:intergenic | 20.0% |
| !! | AAGTATTTGCAATATTTGTA+TGG | - | chr2.1:6536795-6536814 | None:intergenic | 20.0% |
| !! | CAAAATCTGTAAATTGATAT+CGG | - | chr2.1:6535496-6535515 | None:intergenic | 20.0% |
| !! | CAAAGATTTGTCAAATATAT+AGG | - | chr2.1:6536213-6536232 | None:intergenic | 20.0% |
| !! | CATATTAGAATTGAAATTCA+CGG | + | chr2.1:6534831-6534850 | MS.gene45524:intron | 20.0% |
| !! | TTGTATTTGTTCAAAAATAG+CGG | + | chr2.1:6535658-6535677 | MS.gene45524:intron | 20.0% |
| !!! | GGTTTTTCAATTAATTAGTA+AGG | + | chr2.1:6536098-6536117 | MS.gene45524:intron | 20.0% |
| !!! | TTCTTTGTTTTCTTTTCTTT+TGG | + | chr2.1:6534588-6534607 | MS.gene45524:intron | 20.0% |
| !!! | TTGATTTTTTTTTTGTTCTG+AGG | + | chr2.1:6534500-6534519 | MS.gene45524:intron | 20.0% |
| ! | ATATTGCAAAAAATACTGGT+TGG | - | chr2.1:6535787-6535806 | None:intergenic | 25.0% |
| ! | ATTGTCAAATACCATCTATA+CGG | + | chr2.1:6535525-6535544 | MS.gene45524:intron | 25.0% |
| ! | TCGAATATTGCAAAAAATAC+TGG | - | chr2.1:6535791-6535810 | None:intergenic | 25.0% |
| ! | TCTCAATGTACAAATTTCTA+TGG | + | chr2.1:6535883-6535902 | MS.gene45524:intron | 25.0% |
| ! | TTAATGTTGACAATTTCAAG+AGG | - | chr2.1:6534973-6534992 | None:intergenic | 25.0% |
| ! | TTACTTTCTAATATGCTTCA+TGG | + | chr2.1:6536748-6536767 | MS.gene45524:intron | 25.0% |
| !! | ATTTAATTTCTACAAAGGCA+AGG | - | chr2.1:6536561-6536580 | None:intergenic | 25.0% |
| !! | TCCTCATTTAATTTCTACAA+AGG | - | chr2.1:6536566-6536585 | None:intergenic | 25.0% |
| !!! | ACCATTTTCTAGAAATTGTT+GGG | - | chr2.1:6534707-6534726 | None:intergenic | 25.0% |
| !!! | ATTACTAGAAATGCTAGTTT+TGG | - | chr2.1:6536615-6536634 | None:intergenic | 25.0% |
| !!! | TACCATTTTCTAGAAATTGT+TGG | - | chr2.1:6534708-6534727 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTTCTATCTCA+CGG | + | chr2.1:6536346-6536365 | MS.gene45524:intron | 25.0% |
| AAAAAGAGTTATGAGGTCAA+TGG | + | chr2.1:6536910-6536929 | MS.gene45524:CDS | 30.0% | |
| AAAATGCAAATGTGTCTGTT+AGG | + | chr2.1:6536636-6536655 | MS.gene45524:CDS | 30.0% | |
| AAATCACCAAACAATGATCA+AGG | + | chr2.1:6536982-6537001 | MS.gene45524:CDS | 30.0% | |
| AATCACCAAACAATGATCAA+GGG | + | chr2.1:6536983-6537002 | MS.gene45524:CDS | 30.0% | |
| ACTTTACTGTTGTCAAATAG+CGG | + | chr2.1:6535617-6535636 | MS.gene45524:intron | 30.0% | |
| AGGAATTATTGGTGGAATAT+GGG | + | chr2.1:6536158-6536177 | MS.gene45524:intron | 30.0% | |
| ATTCAAATTCTGCTATGCTA+TGG | + | chr2.1:6535231-6535250 | MS.gene45524:intron | 30.0% | |
| GCACAAGATATAAAGAAAAC+AGG | - | chr2.1:6536500-6536519 | None:intergenic | 30.0% | |
| GCCTTTGTAGAAATTAAATG+AGG | + | chr2.1:6536562-6536581 | MS.gene45524:intron | 30.0% | |
| TTATCAGTGTTGTCAAATAG+TGG | + | chr2.1:6535002-6535021 | MS.gene45524:intron | 30.0% | |
| TTGTACTAAATCTCTGATTG+TGG | + | chr2.1:6535194-6535213 | MS.gene45524:intron | 30.0% | |
| TTGTCAAATAGTGGCTATAA+CGG | + | chr2.1:6535011-6535030 | MS.gene45524:intron | 30.0% | |
| ! | ATTGCTGTTAACTGAAAGAT+TGG | + | chr2.1:6536077-6536096 | MS.gene45524:intron | 30.0% |
| ! | CAGATATCTAATTTGCAGTT+TGG | - | chr2.1:6536675-6536694 | None:intergenic | 30.0% |
| ! | TTGGATTTGTTCCCAAATAA+CGG | + | chr2.1:6535050-6535069 | MS.gene45524:intron | 30.0% |
| !! | CCATTTTCTAGAAATTGTTG+GGG | - | chr2.1:6534706-6534725 | None:intergenic | 30.0% |
| !! | TCATTGTTTGGTGATTTGTT+AGG | - | chr2.1:6536979-6536998 | None:intergenic | 30.0% |
| !!! | TTGTTCTTTTTTTCCTCCAA+GGG | + | chr2.1:6536698-6536717 | MS.gene45524:intron | 30.0% |
| !!! | TTTGTTCTTTTTTTCCTCCA+AGG | + | chr2.1:6536697-6536716 | MS.gene45524:intron | 30.0% |
| AAAAAATCATCGCCGAACAA+TGG | + | chr2.1:6537009-6537028 | MS.gene45524:CDS | 35.0% | |
| AAAGAACCCAAACCATTGTT+CGG | - | chr2.1:6537024-6537043 | None:intergenic | 35.0% | |
| AAGGCTACAGCATTAGAATT+CGG | - | chr2.1:6536542-6536561 | None:intergenic | 35.0% | |
| AGGTCAATGGAAATGGTAAA+AGG | + | chr2.1:6536923-6536942 | MS.gene45524:CDS | 35.0% | |
| AGTTATGAGGTCAATGGAAA+TGG | + | chr2.1:6536916-6536935 | MS.gene45524:CDS | 35.0% | |
| CAGGAATTATTGGTGGAATA+TGG | + | chr2.1:6536157-6536176 | MS.gene45524:intron | 35.0% | |
| CATCAGTCATTGCTCAAAAT+TGG | - | chr2.1:6534809-6534828 | None:intergenic | 35.0% | |
| CGTGAACAAAAAGAGTTATG+AGG | + | chr2.1:6536903-6536922 | MS.gene45524:CDS | 35.0% | |
| CTTAATGTGACAAGTTTGAG+AGG | - | chr2.1:6535588-6535607 | None:intergenic | 35.0% | |
| CTTTCGACATATATGTAGTG+TGG | + | chr2.1:6536369-6536388 | MS.gene45524:intron | 35.0% | |
| GAAAATAACTCTTCAGCAGA+AGG | + | chr2.1:6536865-6536884 | MS.gene45524:CDS | 35.0% | |
| GCAATCGTTTGTCATGTTAT+TGG | + | chr2.1:6535961-6535980 | MS.gene45524:intron | 35.0% | |
| TATATGTAGTGTGGTCATAG+TGG | + | chr2.1:6536378-6536397 | MS.gene45524:intron | 35.0% | |
| TCAAACTCTGAACTTTGAAC+AGG | - | chr2.1:6536010-6536029 | None:intergenic | 35.0% | |
| TGAACCAGTGTTATCAATTG+CGG | + | chr2.1:6535091-6535110 | MS.gene45524:intron | 35.0% | |
| TGAATTTCTGAATTGCGAGA+TGG | + | chr2.1:6536130-6536149 | MS.gene45524:intron | 35.0% | |
| TGGTATCCAGTATTGCTTAT+AGG | + | chr2.1:6535981-6536000 | MS.gene45524:intron | 35.0% | |
| TTACGCTATAGCCGTTATTT+GGG | - | chr2.1:6535064-6535083 | None:intergenic | 35.0% | |
| TTCAAACTCACATCAACAGT+TGG | - | chr2.1:6536460-6536479 | None:intergenic | 35.0% | |
| TTGTTCCCTTGATCATTGTT+TGG | - | chr2.1:6536991-6537010 | None:intergenic | 35.0% | |
| ! | CAACAATAACGATTTGGGTT+TGG | - | chr2.1:6534483-6534502 | None:intergenic | 35.0% |
| ! | CCCCAACAATTTCTAGAAAA+TGG | + | chr2.1:6534703-6534722 | MS.gene45524:CDS | 35.0% |
| ! | GTCTTCTGTGGATTTGAAAT+TGG | + | chr2.1:6534853-6534872 | MS.gene45524:intron | 35.0% |
| !! | ATCTTGGTGTTGTCAAATAG+TGG | + | chr2.1:6534910-6534929 | MS.gene45524:intron | 35.0% |
| !! | GTCAAGCATGATGTTAGTTT+TGG | + | chr2.1:6534675-6534694 | MS.gene45524:CDS | 35.0% |
| !!! | AAGCGTTTTGAAGAACTTGA+AGG | + | chr2.1:6534447-6534466 | MS.gene45524:CDS | 35.0% |
| AGATGGTGTGCAGGAATTAT+TGG | + | chr2.1:6536147-6536166 | MS.gene45524:intron | 40.0% | |
| AGGTAGCCTATAAGCAATAC+TGG | - | chr2.1:6535990-6536009 | None:intergenic | 40.0% | |
| ATAGAGAATCTTCAGACCCT+TGG | - | chr2.1:6536717-6536736 | None:intergenic | 40.0% | |
| ATGCAAATGTGTCTGTTAGG+TGG | + | chr2.1:6536639-6536658 | MS.gene45524:intron | 40.0% | |
| ATTCGACCTTTAAATGCTCC+AGG | - | chr2.1:6536418-6536437 | None:intergenic | 40.0% | |
| GCATATGGGTCATGAATTCT+GGG | + | chr2.1:6534775-6534794 | MS.gene45524:intron | 40.0% | |
| GGTTCTTTCAAAAAACCGTC+TGG | + | chr2.1:6537036-6537055 | MS.gene45524:CDS | 40.0% | |
| GGTTGAGAAAGTAGAAGAAG+AGG | + | chr2.1:6534653-6534672 | MS.gene45524:CDS | 40.0% | |
| GTTACGCTATAGCCGTTATT+TGG | - | chr2.1:6535065-6535084 | None:intergenic | 40.0% | |
| TAACTCTTCAGCAGAAGGTT+CGG | + | chr2.1:6536870-6536889 | MS.gene45524:CDS | 40.0% | |
| TGCAAATGTGTCTGTTAGGT+GGG | + | chr2.1:6536640-6536659 | MS.gene45524:intron | 40.0% | |
| TGCATATGGGTCATGAATTC+TGG | + | chr2.1:6534774-6534793 | MS.gene45524:intron | 40.0% | |
| TTATACACACAGTACGTGAG+AGG | - | chr2.1:6536818-6536837 | None:intergenic | 40.0% | |
| TTGAAATTCACGGTCTTCTG+TGG | + | chr2.1:6534841-6534860 | MS.gene45524:intron | 40.0% | |
| !! | TACGAAGTGTTGTCGAATAG+TGG | + | chr2.1:6535315-6535334 | MS.gene45524:intron | 40.0% |
| !!! | GAAATGCTAGTTTTGGCTAC+AGG | - | chr2.1:6536608-6536627 | None:intergenic | 40.0% |
| ACCTTTAAATGCTCCAGGAC+GGG | - | chr2.1:6536413-6536432 | None:intergenic | 45.0% | |
| ATCATCGCCGAACAATGGTT+TGG | + | chr2.1:6537014-6537033 | MS.gene45524:CDS | 45.0% | |
| GACCTTTAAATGCTCCAGGA+CGG | - | chr2.1:6536414-6536433 | None:intergenic | 45.0% | |
| GTGTTATCAATTGCGGATCG+CGG | + | chr2.1:6535098-6535117 | MS.gene45524:intron | 45.0% | |
| TCATCGCCGAACAATGGTTT+GGG | + | chr2.1:6537015-6537034 | MS.gene45524:CDS | 45.0% | |
| TGGTGTGCAGGAATTATTGG+TGG | + | chr2.1:6536150-6536169 | MS.gene45524:intron | 45.0% | |
| TGTTGTCAATCGCGTATCAC+AGG | - | chr2.1:6535382-6535401 | None:intergenic | 45.0% | |
| ! | CAGTCTAGCTTATCTCCAGA+CGG | - | chr2.1:6537054-6537073 | None:intergenic | 45.0% |
| ! | CGATCCGCAATTGATAACAC+TGG | - | chr2.1:6535098-6535117 | None:intergenic | 45.0% |
| ! | TGTAGTGTGGTCATAGTGGA+AGG | + | chr2.1:6536382-6536401 | MS.gene45524:intron | 45.0% |
| ! | TGTCTGTTAGGTGGGTTTCT+TGG | + | chr2.1:6536648-6536667 | MS.gene45524:intron | 45.0% |
| ACCAAACAGCGCCGTATAGA+TGG | - | chr2.1:6535539-6535558 | None:intergenic | 50.0% | |
| ACCATCTATACGGCGCTGTT+TGG | + | chr2.1:6535535-6535554 | MS.gene45524:intron | 50.0% | |
| AGCAGCTGCAAGAGAAGAGA+AGG | + | chr2.1:6534632-6534651 | MS.gene45524:CDS | 50.0% | |
| CAAATAGTGGCTATTGCGCG+CGG | + | chr2.1:6534923-6534942 | MS.gene45524:intron | 50.0% | |
| CCTTTAAATGCTCCAGGACG+GGG | - | chr2.1:6536412-6536431 | None:intergenic | 50.0% | |
| CGGCGCTATTCAGTACAGAT+TGG | + | chr2.1:6535031-6535050 | MS.gene45524:intron | 50.0% | |
| CGTCTGGAGATAAGCTAGAC+TGG | + | chr2.1:6537052-6537071 | MS.gene45524:CDS | 50.0% | |
| GAGAATCTTCAGACCCTTGG+AGG | - | chr2.1:6536714-6536733 | None:intergenic | 50.0% | |
| TGAATTGCGAGATGGTGTGC+AGG | + | chr2.1:6536138-6536157 | MS.gene45524:intron | 50.0% | |
| TTTGCTTTACTGCCGCGCTA+TGG | + | chr2.1:6535142-6535161 | MS.gene45524:intron | 50.0% | |
| ! | GCGCGCGGTTTAGTTCAAAT+TGG | + | chr2.1:6534938-6534957 | MS.gene45524:intron | 50.0% |
| GTTACTGCAGCACCATAGCG+CGG | - | chr2.1:6535157-6535176 | None:intergenic | 55.0% | |
| ! | CCCCGTCCTGGAGCATTTAA+AGG | + | chr2.1:6536409-6536428 | MS.gene45524:CDS | 55.0% |
| !! | GCGCTATGGTGCTGCAGTAA+CGG | + | chr2.1:6535156-6535175 | MS.gene45524:intron | 55.0% |
| GTGGAAGGTGATCCCCGTCC+TGG | + | chr2.1:6536397-6536416 | MS.gene45524:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6534427 | 6537113 | 6534427 | ID=MS.gene45524 |
| chr2.1 | mRNA | 6534427 | 6537113 | 6534427 | ID=MS.gene45524.t1;Parent=MS.gene45524 |
| chr2.1 | exon | 6534427 | 6534468 | 6534427 | ID=MS.gene45524.t1.exon1;Parent=MS.gene45524.t1 |
| chr2.1 | CDS | 6534427 | 6534468 | 6534427 | ID=cds.MS.gene45524.t1;Parent=MS.gene45524.t1 |
| chr2.1 | exon | 6534621 | 6534724 | 6534621 | ID=MS.gene45524.t1.exon2;Parent=MS.gene45524.t1 |
| chr2.1 | CDS | 6534621 | 6534724 | 6534621 | ID=cds.MS.gene45524.t1;Parent=MS.gene45524.t1 |
| chr2.1 | exon | 6536387 | 6536468 | 6536387 | ID=MS.gene45524.t1.exon3;Parent=MS.gene45524.t1 |
| chr2.1 | CDS | 6536387 | 6536468 | 6536387 | ID=cds.MS.gene45524.t1;Parent=MS.gene45524.t1 |
| chr2.1 | exon | 6536572 | 6536657 | 6536572 | ID=MS.gene45524.t1.exon4;Parent=MS.gene45524.t1 |
| chr2.1 | CDS | 6536572 | 6536657 | 6536572 | ID=cds.MS.gene45524.t1;Parent=MS.gene45524.t1 |
| chr2.1 | exon | 6536864 | 6537113 | 6536864 | ID=MS.gene45524.t1.exon5;Parent=MS.gene45524.t1 |
| chr2.1 | CDS | 6536864 | 6537113 | 6536864 | ID=cds.MS.gene45524.t1;Parent=MS.gene45524.t1 |
| Gene Sequence |
| Protein sequence |
