AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45687.t1 MTR_4g069850 100.000 206 0 0 1 206 1 206 7.05e-155 427
MS.gene45687.t1 MTR_4g012940 88.406 207 23 1 1 206 1 207 8.37e-137 381
MS.gene45687.t1 MTR_2g101890 85.854 205 28 1 3 206 5 209 3.18e-132 370
MS.gene45687.t1 MTR_1g097420 71.770 209 54 2 1 206 1 207 2.13e-107 307
MS.gene45687.t1 MTR_1g097420 63.559 236 54 3 1 206 1 234 2.36e-101 293
MS.gene45687.t1 MTR_8g092020 66.010 203 68 1 4 206 8 209 2.24e-99 286
MS.gene45687.t1 MTR_6g039490 59.223 206 83 1 1 206 1 205 3.62e-84 249
MS.gene45687.t1 MTR_1452s0010 84.337 83 13 0 28 110 1 83 4.43e-48 153
MS.gene45687.t1 MTR_4g064897 38.462 208 110 5 8 204 12 212 3.79e-43 144
MS.gene45687.t1 MTR_2g005510 38.117 223 107 7 1 199 1 216 6.09e-42 141
MS.gene45687.t1 MTR_1g068740 39.901 203 108 7 2 199 5 198 2.67e-41 139
MS.gene45687.t1 MTR_5g013900 38.756 209 104 6 10 206 11 207 5.49e-41 138
MS.gene45687.t1 MTR_1g068730 39.409 203 109 7 2 199 5 198 1.04e-40 138
MS.gene45687.t1 MTR_2g005500 41.071 168 92 3 8 175 9 169 2.51e-40 136
MS.gene45687.t1 MTR_2g014990 37.619 210 110 7 8 204 13 214 4.21e-40 136
MS.gene45687.t1 MTR_7g100020 40.415 193 105 6 8 199 15 198 4.28e-40 136
MS.gene45687.t1 MTR_2g096550 42.262 168 92 4 8 175 15 177 7.21e-40 135
MS.gene45687.t1 MTR_1g115325 40.206 194 100 6 8 201 15 192 9.76e-40 135
MS.gene45687.t1 MTR_4g098950 37.981 208 106 6 10 206 11 206 1.20e-39 135
MS.gene45687.t1 MTR_4g088090 36.190 210 113 7 8 204 13 214 7.67e-39 133
MS.gene45687.t1 MTR_3g069510 39.881 168 94 3 8 175 12 172 1.91e-38 132
MS.gene45687.t1 MTR_8g090215 39.024 205 109 6 10 206 11 207 2.18e-38 132
MS.gene45687.t1 MTR_7g081700 37.500 200 114 5 8 204 8 199 3.36e-38 131
MS.gene45687.t1 MTR_3g087160 38.235 204 111 4 10 206 11 206 5.13e-38 130
MS.gene45687.t1 MTR_8g006970 38.000 200 114 5 8 204 22 214 8.04e-38 130
MS.gene45687.t1 MTR_1686s0010 68.750 80 25 0 28 107 1 80 1.18e-37 126
MS.gene45687.t1 MTR_4g079350 35.238 210 115 7 8 204 13 214 1.67e-37 130
MS.gene45687.t1 MTR_1g052475 38.503 187 108 3 8 194 15 194 2.74e-36 127
MS.gene45687.t1 MTR_8g006970 40.964 166 91 4 8 173 8 166 4.66e-36 125
MS.gene45687.t1 MTR_4g063160 38.693 199 110 7 8 203 15 204 5.68e-36 125
MS.gene45687.t1 MTR_6g021790 39.766 171 96 3 8 178 6 169 5.98e-36 125
MS.gene45687.t1 MTR_8g036220 41.358 162 88 4 8 169 16 170 9.07e-36 125
MS.gene45687.t1 MTR_8g103550 39.412 170 96 3 10 179 11 173 2.26e-35 124
MS.gene45687.t1 MTR_2g075950 34.450 209 118 7 8 204 13 214 3.83e-35 124
MS.gene45687.t1 MTR_3g086980 35.714 196 117 4 8 203 16 202 8.22e-35 123
MS.gene45687.t1 MTR_7g405790 36.310 168 100 3 8 175 15 175 1.11e-34 122
MS.gene45687.t1 MTR_2g090865 34.928 209 116 7 8 204 11 211 1.90e-34 122
MS.gene45687.t1 MTR_0262s0050 40.606 165 91 3 8 172 15 172 2.38e-34 122
MS.gene45687.t1 MTR_2g027660 36.683 199 116 4 8 203 6 197 2.81e-34 121
MS.gene45687.t1 MTR_3g064390 38.788 165 94 3 10 174 12 169 4.28e-34 120
MS.gene45687.t1 MTR_5g076590 38.182 165 95 3 10 174 12 169 1.89e-33 119
MS.gene45687.t1 MTR_8g031680 38.824 170 97 3 9 178 7 169 2.40e-33 119
MS.gene45687.t1 MTR_8g089985 36.364 165 98 3 8 172 17 174 2.47e-33 119
MS.gene45687.t1 MTR_1g078200 36.310 168 100 3 8 175 14 174 4.53e-33 118
MS.gene45687.t1 MTR_2g083860 36.970 165 97 2 8 172 13 170 5.67e-33 118
MS.gene45687.t1 MTR_8g027220 33.937 221 124 6 1 206 19 232 1.08e-32 117
MS.gene45687.t1 MTR_7g051940 35.119 168 102 3 8 175 13 173 1.31e-32 117
MS.gene45687.t1 MTR_6g079550 37.654 162 94 3 8 169 12 166 2.44e-32 116
MS.gene45687.t1 MTR_1663s0010 65.333 75 26 0 110 184 1 75 8.96e-32 110
MS.gene45687.t1 MTR_8g031870 35.882 170 102 3 5 174 3 165 1.11e-31 114
MS.gene45687.t1 MTR_8g031660 35.176 199 114 4 8 206 6 189 3.53e-31 113
MS.gene45687.t1 MTR_8g107070 37.654 162 94 3 8 169 14 168 1.06e-30 113
MS.gene45687.t1 MTR_1g068730 41.353 133 70 3 2 130 5 133 1.63e-30 110
MS.gene45687.t1 MTR_1g068740 41.353 133 70 3 2 130 5 133 3.76e-30 110
MS.gene45687.t1 MTR_8g093740 36.416 173 102 5 8 179 13 178 4.05e-30 110
MS.gene45687.t1 MTR_1g094220 35.928 167 99 4 9 174 32 191 6.41e-30 109
MS.gene45687.t1 MTR_7g117910 38.514 148 83 3 8 155 20 159 1.21e-29 109
MS.gene45687.t1 MTR_4g099470 40.559 143 78 3 33 175 9 144 1.41e-29 108
MS.gene45687.t1 MTR_1g029450 36.416 173 102 5 8 179 17 182 5.86e-29 107
MS.gene45687.t1 MTR_1g094220 35.152 165 99 4 9 172 32 189 1.86e-28 106
MS.gene45687.t1 MTR_8g031830 35.976 164 98 3 5 168 3 159 5.89e-28 104
MS.gene45687.t1 MTR_1g094220 34.756 164 99 4 9 171 32 188 1.72e-27 104
MS.gene45687.t1 MTR_1g094220 34.756 164 99 4 9 171 32 188 1.75e-27 103
MS.gene45687.t1 MTR_1g090717 35.567 194 114 6 9 200 16 200 2.25e-27 103
MS.gene45687.t1 MTR_7g103070 36.970 165 97 5 10 173 18 176 3.46e-27 103
MS.gene45687.t1 MTR_2g102060 34.104 173 107 4 2 174 4 169 5.46e-27 102
MS.gene45687.t1 MTR_3g096350 34.682 173 105 5 2 173 6 171 9.48e-27 102
MS.gene45687.t1 MTR_3g064390 39.669 121 69 1 10 130 12 128 1.32e-26 100
MS.gene45687.t1 MTR_1g062760 32.642 193 114 6 9 200 15 192 3.15e-26 100
MS.gene45687.t1 MTR_1812s0010 58.209 67 28 0 111 177 2 68 6.00e-24 90.9
MS.gene45687.t1 MTR_3g107713 31.214 173 95 6 9 174 14 169 1.43e-22 91.3
MS.gene45687.t1 MTR_3g107707 31.214 173 95 6 9 174 14 169 1.48e-22 91.3
MS.gene45687.t1 MTR_3g107717 31.214 173 95 6 9 174 14 169 1.55e-22 91.3
MS.gene45687.t1 MTR_3g096350 37.500 128 75 3 2 128 6 129 2.34e-22 89.0
MS.gene45687.t1 MTR_3g096350 37.500 128 75 3 2 128 6 129 4.46e-22 88.2
MS.gene45687.t1 MTR_8g093740 35.915 142 84 4 39 179 10 145 7.63e-22 88.2
MS.gene45687.t1 MTR_6g087980 29.612 206 122 5 8 204 6 197 3.03e-20 84.7
MS.gene45687.t1 MTR_5g036990 51.087 92 40 3 39 129 32 119 8.50e-19 78.6
MS.gene45687.t1 MTR_4g088055 30.168 179 110 4 8 177 6 178 5.28e-18 78.6
MS.gene45687.t1 MTR_2g093510 61.194 67 26 0 119 185 761 827 8.53e-18 81.3
MS.gene45687.t1 MTR_2g090875 29.050 179 112 4 8 177 6 178 5.23e-17 75.9
MS.gene45687.t1 MTR_7g103070 33.103 145 82 5 57 200 9 139 7.04e-17 74.7
MS.gene45687.t1 MTR_4g113620 27.711 166 101 5 9 174 14 160 1.10e-16 75.5
MS.gene45687.t1 MTR_5g022600 29.050 179 112 5 8 177 6 178 1.49e-16 74.7
MS.gene45687.t1 MTR_8g075240 29.609 179 111 5 8 177 6 178 2.84e-16 73.9
MS.gene45687.t1 MTR_4g073250 26.882 186 121 4 8 184 6 185 3.92e-16 73.6
MS.gene45687.t1 MTR_3g078260 28.497 193 123 4 1 184 1 187 4.09e-16 73.9
MS.gene45687.t1 MTR_3g078260 33.594 128 78 3 1 127 1 122 4.71e-14 67.0
MS.gene45687.t1 MTR_8g091980 25.532 188 106 5 9 169 22 202 2.72e-11 62.0
MS.gene45687.t1 MTR_8g091980 26.286 175 100 4 9 156 22 194 2.85e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45687.t1 AT3G18820 93.204 206 14 0 1 206 1 206 1.67e-145 403
MS.gene45687.t1 AT1G49300 89.320 206 22 0 1 206 1 206 1.49e-139 388
MS.gene45687.t1 AT1G49300 89.320 206 22 0 1 206 1 206 1.49e-139 388
MS.gene45687.t1 AT1G52280 83.981 206 33 0 1 206 1 206 1.42e-130 365
MS.gene45687.t1 AT3G16100 82.524 206 36 0 1 206 1 206 4.12e-130 364
MS.gene45687.t1 AT4G09720 70.874 206 60 0 1 206 1 206 4.10e-111 316
MS.gene45687.t1 AT4G09720 69.194 211 60 1 1 206 1 211 1.13e-107 308
MS.gene45687.t1 AT4G09720 67.281 217 60 1 1 206 1 217 1.89e-107 307
MS.gene45687.t1 AT1G22740 71.014 207 55 2 1 206 1 203 4.14e-106 303
MS.gene45687.t1 AT2G21880 64.762 210 65 2 4 206 5 212 1.09e-97 283
MS.gene45687.t1 AT2G21880 60.952 210 65 3 4 206 5 204 5.38e-88 258
MS.gene45687.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene45687.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene45687.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene45687.t1 AT2G21880 62.434 189 62 2 25 206 1 187 1.82e-83 246
MS.gene45687.t1 AT2G21880 62.434 189 62 2 25 206 1 187 1.82e-83 246
MS.gene45687.t1 AT5G39620 58.721 172 71 0 6 177 3 174 1.44e-72 219
MS.gene45687.t1 AT5G59840 39.594 197 112 5 8 203 15 205 1.13e-41 140
MS.gene45687.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene45687.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene45687.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene45687.t1 AT1G09630 40.936 171 94 3 8 178 12 175 7.67e-41 138
MS.gene45687.t1 AT1G28550 36.190 210 114 6 8 204 13 215 1.23e-40 138
MS.gene45687.t1 AT2G33870 36.190 210 114 6 8 204 13 215 1.48e-40 137
MS.gene45687.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene45687.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene45687.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene45687.t1 AT2G44610 38.571 210 104 6 10 206 11 208 4.97e-40 136
MS.gene45687.t1 AT4G18430 35.238 210 115 7 8 204 13 214 2.32e-39 134
MS.gene45687.t1 AT3G11730 41.011 178 98 3 1 178 1 171 5.60e-39 133
MS.gene45687.t1 AT5G60860 36.667 210 112 7 8 204 13 214 1.09e-38 133
MS.gene45687.t1 AT3G15060 36.190 210 113 7 8 204 13 214 1.47e-38 132
MS.gene45687.t1 AT5G59150 39.394 165 93 3 8 172 12 169 2.14e-38 132
MS.gene45687.t1 AT5G45750 36.364 209 113 8 8 204 13 213 2.22e-38 132
MS.gene45687.t1 AT4G17530 37.186 199 116 4 8 204 8 199 3.03e-38 131
MS.gene45687.t1 AT1G07410 35.577 208 115 6 8 204 12 211 3.21e-38 131
MS.gene45687.t1 AT3G12160 39.474 190 108 3 8 197 15 197 3.89e-38 131
MS.gene45687.t1 AT3G46830 40.000 165 92 3 8 172 12 169 5.96e-38 131
MS.gene45687.t1 AT3G46830 40.000 165 92 3 8 172 12 169 5.96e-38 131
MS.gene45687.t1 AT5G47200 37.186 199 116 4 8 204 8 199 6.10e-38 130
MS.gene45687.t1 AT5G03520 42.697 178 92 5 2 175 5 176 1.71e-37 130
MS.gene45687.t1 AT5G64990 39.234 209 104 6 10 206 9 206 2.71e-37 129
MS.gene45687.t1 AT3G09900 42.697 178 92 5 2 175 5 176 8.04e-37 128
MS.gene45687.t1 AT4G35860 39.766 171 96 3 8 178 6 169 2.13e-36 127
MS.gene45687.t1 AT1G02130 36.000 200 118 5 8 204 8 200 2.95e-36 126
MS.gene45687.t1 AT4G18800 36.957 184 99 4 8 182 13 188 3.87e-36 126
MS.gene45687.t1 AT5G10260 37.019 208 109 6 10 206 11 207 9.43e-36 125
MS.gene45687.t1 AT1G05810 33.645 214 124 5 4 206 8 214 1.22e-35 125
MS.gene45687.t1 AT1G05810 33.645 214 124 5 4 206 54 260 3.10e-35 125
MS.gene45687.t1 AT5G47960 34.906 212 116 5 8 204 15 219 3.32e-35 124
MS.gene45687.t1 AT1G16920 34.135 208 119 7 8 204 13 213 4.74e-35 123
MS.gene45687.t1 AT2G31680 35.714 168 101 3 8 175 12 172 1.29e-34 122
MS.gene45687.t1 AT4G17170 36.683 199 116 4 8 203 6 197 1.36e-34 122
MS.gene45687.t1 AT4G39990 35.052 194 114 4 8 201 17 198 1.44e-34 122
MS.gene45687.t1 AT5G64990 37.963 216 104 7 10 206 9 213 1.49e-34 122
MS.gene45687.t1 AT1G06400 37.576 165 96 3 8 172 13 170 1.96e-34 122
MS.gene45687.t1 AT1G73640 39.506 162 91 3 8 169 13 167 3.26e-34 122
MS.gene45687.t1 AT5G65270 35.676 185 104 4 8 184 17 194 3.38e-34 121
MS.gene45687.t1 AT4G17160 38.824 170 97 3 9 178 7 169 5.88e-34 120
MS.gene45687.t1 AT4G39890 38.182 165 96 2 9 173 10 168 1.61e-33 119
MS.gene45687.t1 AT1G18200 39.394 165 93 4 8 172 13 170 2.03e-33 119
MS.gene45687.t1 AT1G01200 37.278 169 100 2 1 169 21 183 2.15e-33 120
MS.gene45687.t1 AT2G22290 35.294 204 116 4 10 206 11 205 5.98e-33 117
MS.gene45687.t1 AT2G43130 35.714 168 101 3 8 175 12 172 6.16e-33 118
MS.gene45687.t1 AT4G19640 36.066 183 107 4 10 189 12 187 1.02e-32 117
MS.gene45687.t1 AT5G45130 37.576 165 96 3 10 174 12 169 1.19e-32 117
MS.gene45687.t1 AT5G47520 35.714 168 101 3 8 175 14 174 6.14e-32 115
MS.gene45687.t1 AT3G07410 34.524 168 103 3 8 175 12 172 7.03e-32 115
MS.gene45687.t1 AT5G45130 37.423 163 95 3 12 174 22 177 2.00e-31 114
MS.gene45687.t1 AT3G54840 34.659 176 106 5 1 174 25 193 2.02e-29 108
MS.gene45687.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene45687.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene45687.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene45687.t1 AT3G54840 35.152 165 99 4 11 174 2 159 9.27e-29 105
MS.gene45687.t1 AT3G54840 34.302 172 104 5 1 170 25 189 3.03e-28 105
MS.gene45687.t1 AT5G03520 44.697 132 67 4 44 175 41 166 3.41e-28 105
MS.gene45687.t1 AT5G03530 34.896 192 109 7 10 200 15 191 2.48e-27 103
MS.gene45687.t1 AT5G03530 34.896 192 109 7 10 200 15 191 2.48e-27 103
MS.gene45687.t1 AT4G19640 37.226 137 81 2 10 146 12 143 3.51e-27 101
MS.gene45687.t1 AT4G19640 39.167 120 69 1 10 129 12 127 5.26e-26 99.8
MS.gene45687.t1 AT5G59150 39.024 123 68 3 50 172 3 118 9.51e-24 93.2
MS.gene45687.t1 AT4G35860 40.476 126 67 4 50 174 2 120 5.21e-23 90.9
MS.gene45687.t1 AT5G55190 31.214 173 95 6 9 174 14 169 1.65e-22 91.3
MS.gene45687.t1 AT5G20010 31.214 173 95 6 9 174 14 169 1.73e-22 91.3
MS.gene45687.t1 AT5G20020 31.214 173 95 6 9 174 14 169 1.89e-22 90.9
MS.gene45687.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene45687.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene45687.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene45687.t1 AT5G55080 29.101 189 120 4 9 193 14 192 1.63e-21 88.6
MS.gene45687.t1 AT4G28950 31.351 185 114 5 8 185 6 184 6.70e-21 86.7
MS.gene45687.t1 AT3G09910 34.337 166 101 5 9 173 14 172 6.76e-21 86.3
MS.gene45687.t1 AT3G09910 34.337 166 101 5 9 173 14 172 6.76e-21 86.3
MS.gene45687.t1 AT5G45970 28.889 180 113 4 8 178 6 179 1.27e-17 77.8
MS.gene45687.t1 AT5G62880 29.947 187 116 4 1 178 1 181 2.29e-17 77.4
MS.gene45687.t1 AT3G48040 29.947 187 116 4 1 178 1 181 2.12e-16 74.7
MS.gene45687.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene45687.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene45687.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene45687.t1 AT1G20090 28.495 186 115 5 1 177 1 177 1.10e-15 72.4
MS.gene45687.t1 AT2G44690 27.778 180 115 4 8 178 18 191 1.65e-15 72.4
MS.gene45687.t1 AT5G09910 27.168 173 97 4 9 154 23 193 2.18e-15 73.6
MS.gene45687.t1 AT5G09910 27.168 173 97 4 9 154 23 193 2.18e-15 73.6
MS.gene45687.t1 AT1G75840 27.933 179 114 4 8 177 6 178 2.39e-15 71.6
MS.gene45687.t1 AT5G62880 34.615 130 78 4 1 129 1 124 2.63e-15 71.2
MS.gene45687.t1 AT3G51300 28.492 179 113 4 8 177 6 178 3.39e-15 71.2
MS.gene45687.t1 AT2G17800 28.492 179 113 4 8 177 6 178 5.28e-15 70.9
MS.gene45687.t1 AT2G17800 28.492 179 113 4 8 177 6 178 5.28e-15 70.9
MS.gene45687.t1 AT3G48040 34.615 130 78 4 1 129 1 124 6.35e-15 70.1
MS.gene45687.t1 AT4G35950 28.492 179 113 4 8 177 6 178 7.98e-15 70.1
MS.gene45687.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene45687.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene45687.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene45687.t1 AT4G35020 31.405 121 76 3 8 127 6 120 1.96e-12 62.8
MS.gene45687.t1 AT4G35020 31.405 121 76 3 8 127 6 120 1.96e-12 62.8

Find 54 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCAGATGTCTCAAAATA+TGG 0.180049 4.4:-37953881 None:intergenic
ATCTTCAAATTGCACTTCTT+TGG 0.266812 4.4:-37952346 None:intergenic
TTCGACATTAATACCTTCTT+TGG 0.296445 4.4:-37953900 None:intergenic
AAGAAGTGCAATTTGAAGAT+AGG 0.335741 4.4:+37952349 MS.gene45687:CDS
ATTCCTCCCTCCAGTTGTTA+AGG 0.391109 4.4:-37953477 None:intergenic
CTCTTGAAAGTCATCATTCT+CGG 0.403803 4.4:+37951300 MS.gene45687:CDS
CATTTGACAACCTTAACAAC+TGG 0.410397 4.4:+37953467 MS.gene45687:CDS
AGAAAGCAACTCCTAGGCTT+TGG 0.417205 4.4:-37953393 None:intergenic
GCAAAAGATGCCCTGAAAAG+TGG 0.423544 4.4:+37953941 MS.gene45687:CDS
AGCAATCAGCCAAGGTCATC+AGG 0.423555 4.4:+37954435 MS.gene45687:CDS
CTTTCAAGAGCGTTCTTCTA+CGG 0.436158 4.4:-37951287 None:intergenic
TTGTTTCCTATAACAACAAA+AGG 0.451159 4.4:-37953643 None:intergenic
ACAACAAAAGGAAAATTCTC+TGG 0.451708 4.4:-37953631 None:intergenic
TTTCCAACATCAATTGTGTC+TGG 0.462911 4.4:-37954411 None:intergenic
TGCACAGGTTTCAGAAAAGA+AGG 0.467310 4.4:+37953826 MS.gene45687:intron
CTAGGCTTTGGAATCTCTCC+TGG 0.472910 4.4:-37953381 None:intergenic
TAGGAGTTGCTTTCTATCGT+GGG 0.475937 4.4:+37953401 MS.gene45687:CDS
TGGCAGATGTCTCAAAATAT+GGG 0.483704 4.4:-37953880 None:intergenic
CAGAAAAGAAGGCTCGGGCT+TGG 0.485414 4.4:+37953837 MS.gene45687:CDS
TTTGAGACATCTGCCAAAGA+AGG 0.487428 4.4:+37953887 MS.gene45687:CDS
TTTCAAGAGCGTTCTTCTAC+GGG 0.490904 4.4:-37951286 None:intergenic
CGGGCTTGGTGTGCAGCAAA+AGG 0.494459 4.4:+37953851 MS.gene45687:CDS
CAACATCAATTGTGTCTGGC+AGG 0.497094 4.4:-37954407 None:intergenic
GGAAAATTCTCTGGATCGGA+GGG 0.503476 4.4:-37953622 None:intergenic
TGCCCTGAAAAGTGGGGAAG+AGG 0.506394 4.4:+37953949 MS.gene45687:CDS
GGAAACAAGATCGACATTGA+TGG 0.507185 4.4:+37953658 MS.gene45687:CDS
GATTTGGGATACAGCTGGCC+AGG 0.507917 4.4:+37953363 MS.gene45687:intron
GGTTAAGAAGTCAGCTCCAA+TGG 0.508254 4.4:-37952325 None:intergenic
CTAGGAGTTGCTTTCTATCG+TGG 0.516699 4.4:+37953400 MS.gene45687:CDS
AATCAGTACAAGGCAACCAT+TGG 0.525698 4.4:+37952309 MS.gene45687:CDS
CAAAAGATGCCCTGAAAAGT+GGG 0.529283 4.4:+37953942 MS.gene45687:CDS
GGTTTCAGAAAAGAAGGCTC+GGG 0.530322 4.4:+37953832 MS.gene45687:intron
ACACCATTCACAAACCTGTA+AGG 0.531833 4.4:-37952379 None:intergenic
TTGCAGATTTGGGATACAGC+TGG 0.533863 4.4:+37953358 MS.gene45687:intron
AGGTTTCAGAAAAGAAGGCT+CGG 0.537658 4.4:+37953831 MS.gene45687:intron
TCATCATTCTCGGTGACAGC+GGG 0.542655 4.4:+37951310 MS.gene45687:CDS
AAAAGGAAAATTCTCTGGAT+CGG 0.553245 4.4:-37953626 None:intergenic
CTGCCAGACACAATTGATGT+TGG 0.557538 4.4:+37954408 MS.gene45687:CDS
CACTCACATCCTGATGACCT+TGG 0.564551 4.4:-37954444 None:intergenic
AGGAAAATTCTCTGGATCGG+AGG 0.568808 4.4:-37953623 None:intergenic
CACGATAGAAAGCAACTCCT+AGG 0.569261 4.4:-37953399 None:intergenic
TTGACAACCTTAACAACTGG+AGG 0.575421 4.4:+37953470 MS.gene45687:CDS
CAGGAGAGATTCCAAAGCCT+AGG 0.576665 4.4:+37953382 MS.gene45687:CDS
AACAAGATCGACATTGATGG+TGG 0.578098 4.4:+37953661 MS.gene45687:CDS
AAGAGCGTTCTTCTACGGGA+AGG 0.590281 4.4:-37951282 None:intergenic
GTCATCATTCTCGGTGACAG+CGG 0.607687 4.4:+37951309 MS.gene45687:CDS
AGGAGTTGCTTTCTATCGTG+GGG 0.614079 4.4:+37953402 MS.gene45687:CDS
GAAGTTTAGTAATCAGTACA+AGG 0.614358 4.4:+37952299 MS.gene45687:CDS
TTGGAAACAGCAATCAGCCA+AGG 0.645424 4.4:+37954427 MS.gene45687:CDS
ACAAGATCGACATTGATGGT+GGG 0.651715 4.4:+37953662 MS.gene45687:CDS
TGACAACCTTAACAACTGGA+GGG 0.655521 4.4:+37953471 MS.gene45687:CDS
TGATGGTGGGAACAGTAGAG+TGG 0.665695 4.4:+37953675 MS.gene45687:CDS
CAACCTTAACAACTGGAGGG+AGG 0.688480 4.4:+37953474 MS.gene45687:CDS
AAAAGATGCCCTGAAAAGTG+GGG 0.699156 4.4:+37953943 MS.gene45687:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATAATTATGATTAT+CGG - chr4.4:37951369-37951388 None:intergenic 10.0%
!! ACTTAATTTATAGAATTGTT+TGG + chr4.4:37951852-37951871 MS.gene45687:intron 15.0%
!! AGATAAATATTCCAAAAAAA+AGG - chr4.4:37952488-37952507 None:intergenic 15.0%
!! ATATATAGATTGAATCTAAT+GGG + chr4.4:37953012-37953031 MS.gene45687:intron 15.0%
!! CTATAAGTAACTTAATTTAT+AGG + chr4.4:37951532-37951551 MS.gene45687:intron 15.0%
!! GATAAATATTCCAAAAAAAA+GGG - chr4.4:37952487-37952506 None:intergenic 15.0%
!! TGAAAATTGAAAACAAATAT+AGG - chr4.4:37952182-37952201 None:intergenic 15.0%
!! TTAGAATTATCAATAAAAAC+AGG - chr4.4:37953283-37953302 None:intergenic 15.0%
!!! AAATTAAGTTACTTTAGATA+TGG - chr4.4:37951841-37951860 None:intergenic 15.0%
!!! GAATTTTTCTTATAATTGTT+TGG + chr4.4:37951805-37951824 MS.gene45687:intron 15.0%
!!! TAATTTTTCTTATTCTTGTT+TGG + chr4.4:37951493-37951512 MS.gene45687:intron 15.0%
!!! TTCACATATCTAAAATATAT+AGG - chr4.4:37952276-37952295 None:intergenic 15.0%
!!! TTGATAATTCTAAGTTAAAA+TGG + chr4.4:37953290-37953309 MS.gene45687:intron 15.0%
!! AAAGAAAGAAAAGAAAAAAC+TGG - chr4.4:37951937-37951956 None:intergenic 20.0%
!! AAATCAACTTAACATTAACA+TGG - chr4.4:37951888-37951907 None:intergenic 20.0%
!! AATGAAAAGATTGATATGTT+TGG + chr4.4:37954196-37954215 MS.gene45687:intron 20.0%
!! CATAAAAAATGCATTAAGTT+AGG + chr4.4:37954029-37954048 MS.gene45687:intron 20.0%
!! GATATATAGATTGAATCTAA+TGG + chr4.4:37953011-37953030 MS.gene45687:intron 20.0%
!! TATATAGATTGAATCTAATG+GGG + chr4.4:37953013-37953032 MS.gene45687:intron 20.0%
!!! AATTTTCCTTTTGTTGTTAT+AGG + chr4.4:37953637-37953656 MS.gene45687:CDS 20.0%
!!! ATCTTTCTGTTATTTGATAA+TGG + chr4.4:37954303-37954322 MS.gene45687:intron 20.0%
!!! TCAATCTTTTCATTATAACA+TGG - chr4.4:37954190-37954209 None:intergenic 20.0%
!!! TCTTTCTGTTATTTGATAAT+GGG + chr4.4:37954304-37954323 MS.gene45687:intron 20.0%
!!! TCTTTCTTTTTTTCTTAACA+CGG + chr4.4:37951948-37951967 MS.gene45687:intron 20.0%
!!! TGTATTGCATTTTTTGAAAA+CGG + chr4.4:37952809-37952828 MS.gene45687:intron 20.0%
! AAACATAACATCAGTAACAT+TGG - chr4.4:37954344-37954363 None:intergenic 25.0%
! AAACATGTTAGATAGCAAAA+GGG - chr4.4:37953713-37953732 None:intergenic 25.0%
! ACAGAAAGATTCATAATCTA+TGG - chr4.4:37954293-37954312 None:intergenic 25.0%
! ATATTCCAAAAAAAAGGGTT+TGG - chr4.4:37952482-37952501 None:intergenic 25.0%
! ATTCTAAATCTTGCAGATTT+GGG + chr4.4:37953348-37953367 MS.gene45687:intron 25.0%
! CAAAAAATGCAATACACTTT+AGG - chr4.4:37952805-37952824 None:intergenic 25.0%
! CAGAAAGATTCATAATCTAT+GGG - chr4.4:37954292-37954311 None:intergenic 25.0%
! GATAATACATAGATGGTTTA+TGG + chr4.4:37952512-37952531 MS.gene45687:intron 25.0%
! GATTTAATTGAAGAATTCGT+AGG + chr4.4:37952645-37952664 MS.gene45687:intron 25.0%
! TATTCTAAATCTTGCAGATT+TGG + chr4.4:37953347-37953366 MS.gene45687:intron 25.0%
! TCTTTCTGATAATACATAGA+TGG + chr4.4:37952505-37952524 MS.gene45687:intron 25.0%
! TTGTTTCCTATAACAACAAA+AGG - chr4.4:37953646-37953665 None:intergenic 25.0%
! TTTCATTATAACATGGCAAA+TGG - chr4.4:37954183-37954202 None:intergenic 25.0%
!! ATGTTACTGATGTTATGTTT+TGG + chr4.4:37954344-37954363 MS.gene45687:intron 25.0%
!! CATGTAGATATAATTGATTC+TGG - chr4.4:37951584-37951603 None:intergenic 25.0%
!! TGTTACTGATGTTATGTTTT+GGG + chr4.4:37954345-37954364 MS.gene45687:intron 25.0%
!!! AATTACCAAACCCTTTTTTT+TGG + chr4.4:37952474-37952493 MS.gene45687:intron 25.0%
!!! GGTTATGCTTTAAAAATATG+TGG + chr4.4:37952234-37952253 MS.gene45687:intron 25.0%
!!! GTATTGCATTTTTTGAAAAC+GGG + chr4.4:37952810-37952829 MS.gene45687:intron 25.0%
!!! TGAGGTTTTAGTATTGTATA+GGG + chr4.4:37952213-37952232 MS.gene45687:intron 25.0%
!!! TTATATTTTGACGATTGTCT+TGG + chr4.4:37952895-37952914 MS.gene45687:intron 25.0%
!!! TTGGTTTGTCTATATAATAG+TGG + chr4.4:37954215-37954234 MS.gene45687:intron 25.0%
AAAAGGAAAATTCTCTGGAT+CGG - chr4.4:37953629-37953648 None:intergenic 30.0%
ACAACAAAAGGAAAATTCTC+TGG - chr4.4:37953634-37953653 None:intergenic 30.0%
ACTTAATCCAGTAAACTACT+AGG - chr4.4:37952742-37952761 None:intergenic 30.0%
ACTTCCTATACAAAAATCGA+AGG - chr4.4:37952027-37952046 None:intergenic 30.0%
AGGTATATCTGATTATGAGA+TGG + chr4.4:37954049-37954068 MS.gene45687:intron 30.0%
ATCTTCAAATTGCACTTCTT+TGG - chr4.4:37952349-37952368 None:intergenic 30.0%
ATGTTCAACCTTCATTTAAG+AGG - chr4.4:37952677-37952696 None:intergenic 30.0%
GAAACATGTTAGATAGCAAA+AGG - chr4.4:37953714-37953733 None:intergenic 30.0%
GAAGTTTAGTAATCAGTACA+AGG + chr4.4:37952299-37952318 MS.gene45687:CDS 30.0%
TAACAATCCTAAACCGAAAA+AGG - chr4.4:37953117-37953136 None:intergenic 30.0%
TACACATATGTGCAAACTAA+GGG - chr4.4:37952956-37952975 None:intergenic 30.0%
TAGTGAACTAAAACACTAGT+AGG - chr4.4:37954105-37954124 None:intergenic 30.0%
TCTTGGAAACAAATGCATAT+AGG + chr4.4:37954135-37954154 MS.gene45687:intron 30.0%
TTACACATATGTGCAAACTA+AGG - chr4.4:37952957-37952976 None:intergenic 30.0%
TTCGACATTAATACCTTCTT+TGG - chr4.4:37953903-37953922 None:intergenic 30.0%
TTTCCACAAGAAACAAAACA+TGG - chr4.4:37953223-37953242 None:intergenic 30.0%
! AAGAAGTGCAATTTGAAGAT+AGG + chr4.4:37952349-37952368 MS.gene45687:CDS 30.0%
! ATTTTCACTGCAATTTTCTG+AGG + chr4.4:37952195-37952214 MS.gene45687:intron 30.0%
! GGTTTGGTAATTTGTAAATC+TGG - chr4.4:37952466-37952485 None:intergenic 30.0%
! GTATCCTTCGATTTTTGTAT+AGG + chr4.4:37952020-37952039 MS.gene45687:intron 30.0%
!! CTGAGGTTTTAGTATTGTAT+AGG + chr4.4:37952212-37952231 MS.gene45687:intron 30.0%
!! TTTTTCGGTTTAGGATTGTT+AGG + chr4.4:37953116-37953135 MS.gene45687:intron 30.0%
!!! AAATCGCTATTTTTTGCGAT+CGG + chr4.4:37952139-37952158 MS.gene45687:intron 30.0%
!!! GATTTTGAGATGCTTGAAAA+TGG + chr4.4:37952411-37952430 MS.gene45687:intron 30.0%
AACTTTATGCTCACTTCATC+AGG + chr4.4:37953594-37953613 MS.gene45687:intron 35.0%
AGGTGTTTCACAAATGTATC+TGG - chr4.4:37953765-37953784 None:intergenic 35.0%
ATACTGTGAAATAGTGGCTA+TGG + chr4.4:37952080-37952099 MS.gene45687:intron 35.0%
ATATGTGCAAACTAAGGGTT+AGG - chr4.4:37952951-37952970 None:intergenic 35.0%
CATTTGACAACCTTAACAAC+TGG + chr4.4:37953467-37953486 MS.gene45687:CDS 35.0%
CTCTTGAAAGTCATCATTCT+CGG + chr4.4:37951300-37951319 MS.gene45687:CDS 35.0%
CTGCTTAGCAGTACATATTT+AGG - chr4.4:37953785-37953804 None:intergenic 35.0%
GATTATGAGATGGTGTTCAT+TGG + chr4.4:37954059-37954078 MS.gene45687:intron 35.0%
GCTATAACACTTTAGCATAG+CGG + chr4.4:37952107-37952126 MS.gene45687:intron 35.0%
GTTTGCACATATGTGTAATG+TGG + chr4.4:37952959-37952978 MS.gene45687:intron 35.0%
TCATTTAGTTGGAAAAGGCT+TGG + chr4.4:37952560-37952579 MS.gene45687:intron 35.0%
TGGCAGATGTCTCAAAATAT+GGG - chr4.4:37953883-37953902 None:intergenic 35.0%
TTCACATGCAAGCTCAAAAT+TGG + chr4.4:37951459-37951478 MS.gene45687:intron 35.0%
TTCACTATATCCATGTCTCT+TGG + chr4.4:37954118-37954137 MS.gene45687:intron 35.0%
TTGGCAGATGTCTCAAAATA+TGG - chr4.4:37953884-37953903 None:intergenic 35.0%
TTTCCAACATCAATTGTGTC+TGG - chr4.4:37954414-37954433 None:intergenic 35.0%
! AAGCCTTTTCCAACTAAATG+AGG - chr4.4:37952561-37952580 None:intergenic 35.0%
! AGTGTTCTTGATGATTTGCA+GGG + chr4.4:37951972-37951991 MS.gene45687:intron 35.0%
! CTTTTCCAACTAAATGAGGT+CGG - chr4.4:37952557-37952576 None:intergenic 35.0%
! TAGTGTTCTTGATGATTTGC+AGG + chr4.4:37951971-37951990 MS.gene45687:intron 35.0%
!!! ATTTTTTGAGCAGTGCACTT+TGG + chr4.4:37953146-37953165 MS.gene45687:intron 35.0%
!!! CATCCATGTTTTGTTTCTTG+TGG + chr4.4:37953217-37953236 MS.gene45687:intron 35.0%
AAAAGATGCCCTGAAAAGTG+GGG + chr4.4:37953943-37953962 MS.gene45687:CDS 40.0%
AAACACGCCTAGTAGTTTAC+TGG + chr4.4:37952732-37952751 MS.gene45687:intron 40.0%
AACAAGATCGACATTGATGG+TGG + chr4.4:37953661-37953680 MS.gene45687:CDS 40.0%
AACAAGCACGAATTTCCACA+TGG - chr4.4:37954380-37954399 None:intergenic 40.0%
AACCCTAGAATTGAAGAGTG+AGG - chr4.4:37951344-37951363 None:intergenic 40.0%
AATCAGTACAAGGCAACCAT+TGG + chr4.4:37952309-37952328 MS.gene45687:CDS 40.0%
ACACATAAGTTCTTGTGCAC+AGG + chr4.4:37953811-37953830 MS.gene45687:intron 40.0%
ACACCATTCACAAACCTGTA+AGG - chr4.4:37952382-37952401 None:intergenic 40.0%
ACCCTAGAATTGAAGAGTGA+GGG - chr4.4:37951343-37951362 None:intergenic 40.0%
ACTAAATGAGGTCGGATACA+TGG - chr4.4:37952549-37952568 None:intergenic 40.0%
AGGTTTCAGAAAAGAAGGCT+CGG + chr4.4:37953831-37953850 MS.gene45687:intron 40.0%
CAAAAGATGCCCTGAAAAGT+GGG + chr4.4:37953942-37953961 MS.gene45687:CDS 40.0%
CATGTTAGATAGCAAAAGGG+AGG - chr4.4:37953710-37953729 None:intergenic 40.0%
CGACCTCATTTAGTTGGAAA+AGG + chr4.4:37952555-37952574 MS.gene45687:intron 40.0%
GACCAAGCGATGTAAATGAT+AGG + chr4.4:37952440-37952459 MS.gene45687:intron 40.0%
GCATTTGTTTCCAAGAGACA+TGG - chr4.4:37954131-37954150 None:intergenic 40.0%
GCGACTATACTGTGAAATAG+TGG + chr4.4:37952074-37952093 MS.gene45687:intron 40.0%
GCGTGTTTAATGTACACAAC+AGG - chr4.4:37952720-37952739 None:intergenic 40.0%
GGAAACAAGATCGACATTGA+TGG + chr4.4:37953658-37953677 MS.gene45687:CDS 40.0%
GGTCACAACCTCTTAAATGA+AGG + chr4.4:37952666-37952685 MS.gene45687:intron 40.0%
TCACCTTACAGGTTTGTGAA+TGG + chr4.4:37952376-37952395 MS.gene45687:intron 40.0%
TCCCTCACTCTTCAATTCTA+GGG + chr4.4:37951339-37951358 MS.gene45687:intron 40.0%
TGACAACCTTAACAACTGGA+GGG + chr4.4:37953471-37953490 MS.gene45687:CDS 40.0%
TGCACAGGTTTCAGAAAAGA+AGG + chr4.4:37953826-37953845 MS.gene45687:intron 40.0%
TGTATCCGACCTCATTTAGT+TGG + chr4.4:37952549-37952568 MS.gene45687:intron 40.0%
TTGACAACCTTAACAACTGG+AGG + chr4.4:37953470-37953489 MS.gene45687:CDS 40.0%
! ACAAGATCGACATTGATGGT+GGG + chr4.4:37953662-37953681 MS.gene45687:CDS 40.0%
! AGATAGGCTTTTCACCTTAC+AGG + chr4.4:37952365-37952384 MS.gene45687:CDS 40.0%
! CTAATACTCAAAGAGCGTGA+CGG - chr4.4:37953196-37953215 None:intergenic 40.0%
! TAGGAGTTGCTTTCTATCGT+GGG + chr4.4:37953401-37953420 MS.gene45687:CDS 40.0%
! TCTAGAGTAGCTTAGTGCAT+AGG + chr4.4:37951781-37951800 MS.gene45687:intron 40.0%
! TTCTTGATGATTTGCAGGGT+GGG + chr4.4:37951976-37951995 MS.gene45687:intron 40.0%
! TTGAAAACGGGCTTGTGTAT+GGG + chr4.4:37952822-37952841 MS.gene45687:intron 40.0%
! TTTGAAAACGGGCTTGTGTA+TGG + chr4.4:37952821-37952840 MS.gene45687:intron 40.0%
! TTTGAGACATCTGCCAAAGA+AGG + chr4.4:37953887-37953906 MS.gene45687:CDS 40.0%
! TTTGGGATTTGTTCTCCATG+TGG + chr4.4:37954362-37954381 MS.gene45687:intron 40.0%
!! CTTTCAAGAGCGTTCTTCTA+CGG - chr4.4:37951290-37951309 None:intergenic 40.0%
!! TGCAATACACTTTAGGATGC+AGG - chr4.4:37952798-37952817 None:intergenic 40.0%
!! TTTCAAGAGCGTTCTTCTAC+GGG - chr4.4:37951289-37951308 None:intergenic 40.0%
!! TTTCAGGGCATCTTTTGCAA+TGG - chr4.4:37953939-37953958 None:intergenic 40.0%
!!! TCAAGAGCCTTTTTCGGTTT+AGG + chr4.4:37953107-37953126 MS.gene45687:intron 40.0%
AGAAAGCAACTCCTAGGCTT+TGG - chr4.4:37953396-37953415 None:intergenic 45.0%
AGGAAAATTCTCTGGATCGG+AGG - chr4.4:37953626-37953645 None:intergenic 45.0%
ATGAGATGGTGTTCATTGGC+TGG + chr4.4:37954063-37954082 MS.gene45687:intron 45.0%
ATTCCTCCCTCCAGTTGTTA+AGG - chr4.4:37953480-37953499 None:intergenic 45.0%
CAACATCAATTGTGTCTGGC+AGG - chr4.4:37954410-37954429 None:intergenic 45.0%
CACGATAGAAAGCAACTCCT+AGG - chr4.4:37953402-37953421 None:intergenic 45.0%
CTCCCTCACTCTTCAATTCT+AGG + chr4.4:37951338-37951357 MS.gene45687:intron 45.0%
CTGCCAGACACAATTGATGT+TGG + chr4.4:37954408-37954427 MS.gene45687:CDS 45.0%
CTGTGAAATAGTGGCTATGG+CGG + chr4.4:37952083-37952102 MS.gene45687:intron 45.0%
GCAAAAGATGCCCTGAAAAG+TGG + chr4.4:37953941-37953960 MS.gene45687:CDS 45.0%
GGAAAATTCTCTGGATCGGA+GGG - chr4.4:37953625-37953644 None:intergenic 45.0%
GGCCTATCATTTACATCGCT+TGG - chr4.4:37952445-37952464 None:intergenic 45.0%
GGTTAAGAAGTCAGCTCCAA+TGG - chr4.4:37952328-37952347 None:intergenic 45.0%
GGTTTCAGAAAAGAAGGCTC+GGG + chr4.4:37953832-37953851 MS.gene45687:intron 45.0%
TTGGAAACAGCAATCAGCCA+AGG + chr4.4:37954427-37954446 MS.gene45687:CDS 45.0%
TTTGAGCAGTGCACTTTGGT+GGG + chr4.4:37953150-37953169 MS.gene45687:intron 45.0%
! AGGAGTTGCTTTCTATCGTG+GGG + chr4.4:37953402-37953421 MS.gene45687:CDS 45.0%
! CTAGGAGTTGCTTTCTATCG+TGG + chr4.4:37953400-37953419 MS.gene45687:CDS 45.0%
! GCACTCTCAAGAGCCTTTTT+CGG + chr4.4:37953101-37953120 MS.gene45687:intron 45.0%
! GGGCATCTTTTGCAATGGTT+TGG - chr4.4:37953934-37953953 None:intergenic 45.0%
! GTTCTTGATGATTTGCAGGG+TGG + chr4.4:37951975-37951994 MS.gene45687:intron 45.0%
! TCTTGATGATTTGCAGGGTG+GGG + chr4.4:37951977-37951996 MS.gene45687:intron 45.0%
! TGAGATGGTGTTCATTGGCT+GGG + chr4.4:37954064-37954083 MS.gene45687:intron 45.0%
! TTGCAGATTTGGGATACAGC+TGG + chr4.4:37953358-37953377 MS.gene45687:intron 45.0%
! TTTTGAGCAGTGCACTTTGG+TGG + chr4.4:37953149-37953168 MS.gene45687:intron 45.0%
!! TTCCTCTTCCCCACTTTTCA+GGG - chr4.4:37953954-37953973 None:intergenic 45.0%
ACGGGCTTGTGTATGGGATT+TGG + chr4.4:37952828-37952847 MS.gene45687:intron 50.0%
AGCAATCAGCCAAGGTCATC+AGG + chr4.4:37954435-37954454 MS.gene45687:CDS 50.0%
ATGGGTCTGTGTCAGACATG+CGG + chr4.4:37951684-37951703 MS.gene45687:intron 50.0%
CAACCTTAACAACTGGAGGG+AGG + chr4.4:37953474-37953493 MS.gene45687:CDS 50.0%
CACTCACATCCTGATGACCT+TGG - chr4.4:37954447-37954466 None:intergenic 50.0%
CAGGAGAGATTCCAAAGCCT+AGG + chr4.4:37953382-37953401 MS.gene45687:CDS 50.0%
CGGGCTTGTGTATGGGATTT+GGG + chr4.4:37952829-37952848 MS.gene45687:intron 50.0%
GTCATCATTCTCGGTGACAG+CGG + chr4.4:37951309-37951328 MS.gene45687:CDS 50.0%
GTCCTACACCGACATGTGTT+GGG + chr4.4:37951715-37951734 MS.gene45687:intron 50.0%
TCATCATTCTCGGTGACAGC+GGG + chr4.4:37951310-37951329 MS.gene45687:CDS 50.0%
TCTGACACAGACCCATGTGT+CGG - chr4.4:37951680-37951699 None:intergenic 50.0%
TGTCCTACACCGACATGTGT+TGG + chr4.4:37951714-37951733 MS.gene45687:intron 50.0%
TTGAGCAGTGCACTTTGGTG+GGG + chr4.4:37953151-37953170 MS.gene45687:intron 50.0%
! AAAGGCTCTTGAGAGTGCAG+CGG - chr4.4:37953099-37953118 None:intergenic 50.0%
! AGATGGTGTTCATTGGCTGG+GGG + chr4.4:37954066-37954085 MS.gene45687:intron 50.0%
! GAGATGGTGTTCATTGGCTG+GGG + chr4.4:37954065-37954084 MS.gene45687:intron 50.0%
! TCAGACGTGTACCGACACAT+GGG + chr4.4:37951666-37951685 MS.gene45687:intron 50.0%
!! AAGAGCGTTCTTCTACGGGA+AGG - chr4.4:37951285-37951304 None:intergenic 50.0%
!! CTAGGCTTTGGAATCTCTCC+TGG - chr4.4:37953384-37953403 None:intergenic 50.0%
!! CTTCCTCTTCCCCACTTTTC+AGG - chr4.4:37953955-37953974 None:intergenic 50.0%
!! TGATGGTGGGAACAGTAGAG+TGG + chr4.4:37953675-37953694 MS.gene45687:CDS 50.0%
!! TTGGCTGGGGGAGCATATTT+TGG + chr4.4:37954078-37954097 MS.gene45687:intron 50.0%
CAGAAAAGAAGGCTCGGGCT+TGG + chr4.4:37953837-37953856 MS.gene45687:CDS 55.0%
GTCCAGTGCCCAACACATGT+CGG - chr4.4:37951726-37951745 None:intergenic 55.0%
TGCCCAACACATGTCGGTGT+AGG - chr4.4:37951720-37951739 None:intergenic 55.0%
TGCCCTGAAAAGTGGGGAAG+AGG + chr4.4:37953949-37953968 MS.gene45687:CDS 55.0%
TGGGTCTGTGTCAGACATGC+GGG + chr4.4:37951685-37951704 MS.gene45687:intron 55.0%
! GATTTGGGATACAGCTGGCC+AGG + chr4.4:37953363-37953382 MS.gene45687:intron 55.0%
! GTCAGACGTGTACCGACACA+TGG + chr4.4:37951665-37951684 MS.gene45687:intron 55.0%
!! GTAGCACTGACACTCCTGAC+CGG - chr4.4:37951755-37951774 None:intergenic 55.0%
CACCGACATGTGTTGGGCAC+TGG + chr4.4:37951721-37951740 MS.gene45687:intron 60.0%
!! CGGGCTTGGTGTGCAGCAAA+AGG + chr4.4:37953851-37953870 MS.gene45687:CDS 60.0%
! GCACTGACACTCCTGACCGG+AGG - chr4.4:37951752-37951771 None:intergenic 65.0%
!! TTGGGCACTGGACACGCCTC+CGG + chr4.4:37951733-37951752 MS.gene45687:intron 65.0%
CACTGGACACGCCTCCGGTC+AGG + chr4.4:37951738-37951757 MS.gene45687:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 37951279 37954470 37951279 ID=MS.gene45687
chr4.4 mRNA 37951279 37954470 37951279 ID=MS.gene45687.t1;Parent=MS.gene45687
chr4.4 exon 37951279 37951331 37951279 ID=MS.gene45687.t1.exon1;Parent=MS.gene45687.t1
chr4.4 CDS 37951279 37951331 37951279 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37951993 37952019 37951993 ID=MS.gene45687.t1.exon2;Parent=MS.gene45687.t1
chr4.4 CDS 37951993 37952019 37951993 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37952287 37952386 37952287 ID=MS.gene45687.t1.exon3;Parent=MS.gene45687.t1
chr4.4 CDS 37952287 37952386 37952287 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37953364 37953510 37953364 ID=MS.gene45687.t1.exon4;Parent=MS.gene45687.t1
chr4.4 CDS 37953364 37953510 37953364 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37953616 37953696 37953616 ID=MS.gene45687.t1.exon5;Parent=MS.gene45687.t1
chr4.4 CDS 37953616 37953696 37953616 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37953833 37953978 37953833 ID=MS.gene45687.t1.exon6;Parent=MS.gene45687.t1
chr4.4 CDS 37953833 37953978 37953833 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
chr4.4 exon 37954404 37954470 37954404 ID=MS.gene45687.t1.exon7;Parent=MS.gene45687.t1
chr4.4 CDS 37954404 37954470 37954404 ID=cds.MS.gene45687.t1;Parent=MS.gene45687.t1
Gene Sequence

>MS.gene45687

ATGCCTTCCCGTAGAAGAACGCTCTTGAAAGTCATCATTCTCGGTGACAGCGGGTTCGTCTCCCTCACTCTTCAATTCTAGGGTTTTCCGATAATCATAATTATCATATTCTACAGATCTTATACAATTTTGTTTTCTTCTGCTTATTTTTATTCTTCGATCTTTGTTTGAACTCAATTATTCACATGCAAGCTCAAAATTGGATCGTAGTTTGTAATTTTTCTTATTCTTGTTTGGATCACGAGAATTATAGCTATAAGTAACTTAATTTATAGGTGAATTTCTTATTCTTGTTTAGATCACCAGAATCAATTATATCTACATGAAACTGACACATGAACACGATGATAATTTGAGAAAATGACACAATTCAGTGACATAACGTTGTCAGACGTGTACCGACACATGGGTCTGTGTCAGACATGCGGGACATTGTGTCCTACACCGACATGTGTTGGGCACTGGACACGCCTCCGGTCAGGAGTGTCAGTGCTACAAAGTATCTAGAGTAGCTTAGTGCATAGGTGAATTTTTCTTATAATTGTTTGGATCACAAGAACCATATCTAAAGTAACTTAATTTATAGAATTGTTTGGATACTTACAACCATGTTAATGTTAAGTTGATTTATGAGTTGAATTATTTGTTGTATCTACCAGTTTTTTCTTTTCTTTCTTTTTTTCTTAACACGGTAGTGTTCTTGATGATTTGCAGGGTGGGGAAGACGTCTTTGATGAATCAGTATCCTTCGATTTTTGTATAGGAAGTCAGTGTTATGTTCAGTGTTGTTAATTAGCGACTATACTGTGAAATAGTGGCTATGGCGGTGCTATAACACTTTAGCATAGCGGAATTTGAATAAATCGCTATTTTTTGCGATCGGTAACTGACAACACTGATCCTATATTTGTTTTCAATTTTCACTGCAATTTTCTGAGGTTTTAGTATTGTATAGGGTTATGCTTTAAAAATATGTGGTCTGTGTTTCTCTTAACCTATATATTTTAGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCTGACTTCTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGGTTTGTGAATGGTGTGCTTAATTTGATTTTGAGATGCTTGAAAATGGCTTCATGACCAAGCGATGTAAATGATAGGCCAGATTTACAAATTACCAAACCCTTTTTTTTGGAATATTTATCTTTCTGATAATACATAGATGGTTTATGGCGTAATTTGATCCATGTATCCGACCTCATTTAGTTGGAAAAGGCTTGGTTGTTGTTGTTGTTGTTGTTGTATTACATAGATGTTTTAGATTGTGCATTATGTTACATGCTGATTTAATTGAAGAATTCGTAGGTCACAACCTCTTAAATGAAGGTTGAACATGTTTGTTACTGTGTTATCAGCCTGTTGTGTACATTAAACACGCCTAGTAGTTTACTGGATTAAGTTTGTTACTTATTGCTCATTTTGATGTTAGAATGCCTGCATCCTAAAGTGTATTGCATTTTTTGAAAACGGGCTTGTGTATGGGATTTGGGAAGTGAATGATGATGTTTTCTTTCGTTTTTGAGAAATTGTTTATTATATTTTGACGATTGTCTTGGCACATGACTTTAAAATGTAACACACTATAGCCTAACCCTTAGTTTGCACATATGTGTAATGTGGCTTTGTTAGTCTTAACATTGAGCATCTCTGATATATAGATTGAATCTAATGGGGAAGAGAACTAAATCTATTTAAATGATAACTATATTTATAACGATTAATATCTAAGTTTTTCCGCTGCACTCTCAAGAGCCTTTTTCGGTTTAGGATTGTTAGGCTGCTTAATTTTTTGAGCAGTGCACTTTGGTGGGGTATAAATTTTAGCATATTACCGTCACGCTCTTTGAGTATTAGACATCCATGTTTTGTTTCTTGTGGAAATCTTATTTGCGCTTGTTCTACATCTCATAATTATCTTCCTGTTTTTATTGATAATTCTAAGTTAAAATGGTAAAAGTTTTCTTTGCTTTTGTTTTAATTTTTAGTATTCTAAATCTTGCAGATTTGGGATACAGCTGGCCAGGAGAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGGGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGTATGATTGTGCTTCTCTCTCTCTTCATAATTTTTTAATTTATTTATCATCTAAAGCAATGTAGAAGAATTTCATAACTTCTGAACTTTATGCTCACTTCATCAGGCAAATCCCTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATCGACATTGATGGTGGGAACAGTAGAGTGGTATGTTTTTCCTCCCTTTTGCTATCTAACATGTTTCTTTTATTTCTTTCAAAAGCTTGCATGCACCAGATACATTTGTGAAACACCTAAATATGTACTGCTAAGCAGATTAACACACATAAGTTCTTGTGCACAGGTTTCAGAAAAGAAGGCTCGGGCTTGGTGTGCAGCAAAAGGAAATATCCCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTCGAAGAAGCATTCCAAACCATTGCAAAAGATGCCCTGAAAAGTGGGGAAGAGGAAGAATTGTAAGTTCTTAAGCATGTGTATCTCTTACTTAATATATGTGAACATACTTCATAAAAAATGCATTAAGTTAGGTATATCTGATTATGAGATGGTGTTCATTGGCTGGGGGAGCATATTTTGGTCCTACTAGTGTTTTAGTTCACTATATCCATGTCTCTTGGAAACAAATGCATATAGGATTGATGTTTAATGATAGAGAACCATTTGCCATGTTATAATGAAAAGATTGATATGTTTGGTTTGTCTATATAATAGTGGCGTGCAAAGAAATTTCAGTGTGTATTTCAGTTGCAGTATATTTGATAGTTACCCATAGATTATGAATCTTTCTGTTATTTGATAATGGGATAATTTAATTACTCCAATGTTACTGATGTTATGTTTTGGGATTTGTTCTCCATGTGGAAATTCGTGCTTGTTGAAGATACCTGCCAGACACAATTGATGTTGGAAACAGCAATCAGCCAAGGTCATCAGGATGTGAGTGCTGA
Protein sequence

>MS.gene45687.t1

MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSNQPRSSGCEC