AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000694


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000694.t1 MTR_7g405790 99.091 220 1 1 1 219 1 220 2.86e-160 442
MS.gene000694.t1 MTR_7g051940 80.676 207 37 1 13 219 12 215 4.26e-120 340
MS.gene000694.t1 MTR_1g078200 62.555 227 73 2 1 219 1 223 2.59e-97 283
MS.gene000694.t1 MTR_8g089985 60.914 197 66 1 12 208 15 200 9.26e-85 251
MS.gene000694.t1 MTR_4g064897 55.288 208 90 1 12 219 10 214 8.21e-84 248
MS.gene000694.t1 MTR_1g052475 55.399 213 86 3 12 218 13 222 8.60e-84 248
MS.gene000694.t1 MTR_3g086980 55.660 212 85 2 12 218 14 221 3.76e-83 246
MS.gene000694.t1 MTR_2g075950 65.318 173 60 0 12 184 11 183 9.53e-82 243
MS.gene000694.t1 MTR_2g083860 58.173 208 86 1 12 219 11 217 1.94e-81 242
MS.gene000694.t1 MTR_0262s0050 61.932 176 67 0 12 187 13 188 9.06e-81 241
MS.gene000694.t1 MTR_8g036220 54.378 217 91 2 10 219 12 227 1.42e-80 240
MS.gene000694.t1 MTR_2g005510 60.428 187 73 1 1 186 1 187 4.46e-80 239
MS.gene000694.t1 MTR_4g079350 56.731 208 88 1 12 219 11 216 6.19e-80 238
MS.gene000694.t1 MTR_3g069510 54.327 208 93 1 12 219 10 215 9.17e-80 238
MS.gene000694.t1 MTR_4g088090 56.731 208 88 1 12 219 11 216 1.55e-79 237
MS.gene000694.t1 MTR_2g090865 58.654 208 83 2 12 219 9 213 4.14e-79 236
MS.gene000694.t1 MTR_2g014990 56.731 208 88 1 12 219 11 216 6.92e-79 236
MS.gene000694.t1 MTR_8g027220 51.208 207 100 1 12 217 24 230 1.95e-72 220
MS.gene000694.t1 MTR_8g107070 55.851 188 81 1 12 199 12 197 1.07e-65 204
MS.gene000694.t1 MTR_6g079550 48.558 208 105 1 12 219 10 215 1.82e-65 201
MS.gene000694.t1 MTR_7g117910 54.430 158 72 0 12 169 18 175 3.57e-61 190
MS.gene000694.t1 MTR_2g027660 43.541 209 114 2 13 219 5 211 1.22e-58 184
MS.gene000694.t1 MTR_6g021790 43.810 210 114 2 12 219 4 211 2.60e-57 181
MS.gene000694.t1 MTR_7g081700 47.701 174 91 0 12 185 6 179 2.73e-53 170
MS.gene000694.t1 MTR_8g031870 51.923 156 75 0 13 168 5 160 7.70e-53 168
MS.gene000694.t1 MTR_2g005500 42.439 205 113 1 1 205 1 200 1.29e-52 168
MS.gene000694.t1 MTR_8g031680 42.512 207 118 1 13 219 5 210 2.15e-51 166
MS.gene000694.t1 MTR_8g031660 48.503 167 86 0 13 179 5 171 2.29e-51 165
MS.gene000694.t1 MTR_1g115325 39.904 208 118 3 12 218 13 214 5.12e-51 165
MS.gene000694.t1 MTR_1g068740 40.385 208 117 4 12 218 13 214 2.60e-50 163
MS.gene000694.t1 MTR_1g068730 40.385 208 117 4 12 218 13 214 4.18e-50 162
MS.gene000694.t1 MTR_8g006970 50.318 157 78 0 12 168 6 162 6.39e-50 160
MS.gene000694.t1 MTR_8g006970 50.318 157 78 0 12 168 20 176 7.57e-50 162
MS.gene000694.t1 MTR_7g100020 44.848 165 90 1 12 175 13 177 5.09e-48 157
MS.gene000694.t1 MTR_8g031830 49.020 153 78 0 13 165 5 157 2.80e-47 154
MS.gene000694.t1 MTR_2g096550 36.842 209 121 4 12 218 13 212 5.70e-47 154
MS.gene000694.t1 MTR_1g094220 42.614 176 99 2 2 175 18 193 1.63e-46 152
MS.gene000694.t1 MTR_1g094220 41.622 185 106 2 2 184 18 202 1.89e-46 152
MS.gene000694.t1 MTR_1g094220 43.353 173 96 2 2 172 18 190 4.49e-46 152
MS.gene000694.t1 MTR_1g094220 43.860 171 94 2 2 170 18 188 1.47e-45 151
MS.gene000694.t1 MTR_4g063160 38.498 213 115 6 12 218 13 215 2.36e-44 147
MS.gene000694.t1 MTR_2g102060 37.255 204 112 2 16 219 12 199 2.70e-44 147
MS.gene000694.t1 MTR_3g064390 41.250 160 94 0 16 175 12 171 1.74e-43 145
MS.gene000694.t1 MTR_8g093740 43.860 171 93 3 12 180 11 180 1.71e-42 142
MS.gene000694.t1 MTR_4g099470 47.183 142 75 0 45 186 15 156 4.41e-42 140
MS.gene000694.t1 MTR_5g076590 39.375 160 97 0 16 175 12 171 3.63e-41 139
MS.gene000694.t1 MTR_3g087160 38.217 157 97 0 15 171 10 166 9.78e-41 138
MS.gene000694.t1 MTR_7g103070 45.833 168 89 2 15 180 17 184 1.30e-40 138
MS.gene000694.t1 MTR_8g090215 34.483 203 128 2 15 217 10 207 1.50e-40 137
MS.gene000694.t1 MTR_1g068740 43.056 144 74 1 12 155 13 148 2.14e-40 137
MS.gene000694.t1 MTR_1g068730 45.385 130 71 0 12 141 13 142 3.28e-40 135
MS.gene000694.t1 MTR_5g013900 38.854 157 96 0 15 171 10 166 4.14e-40 136
MS.gene000694.t1 MTR_3g096350 43.275 171 94 3 12 180 10 179 5.47e-40 136
MS.gene000694.t1 MTR_8g103550 39.881 168 100 1 16 182 11 178 1.46e-39 135
MS.gene000694.t1 MTR_1g062760 46.012 163 85 3 15 175 15 176 7.54e-39 133
MS.gene000694.t1 MTR_1g029450 42.105 171 96 3 12 180 15 184 1.43e-38 133
MS.gene000694.t1 MTR_4g098950 36.943 157 99 0 15 171 10 166 4.93e-38 131
MS.gene000694.t1 MTR_8g092020 41.317 167 91 3 14 173 12 178 1.87e-37 130
MS.gene000694.t1 MTR_1g090717 43.503 177 97 3 2 175 3 179 6.34e-37 128
MS.gene000694.t1 MTR_1g097420 39.535 172 97 3 14 178 8 179 2.52e-36 127
MS.gene000694.t1 MTR_2g101890 37.209 172 101 3 14 178 10 181 6.48e-35 123
MS.gene000694.t1 MTR_4g069850 36.310 168 100 3 14 174 8 175 9.71e-35 122
MS.gene000694.t1 MTR_4g012940 36.628 172 102 3 14 178 8 179 5.21e-34 121
MS.gene000694.t1 MTR_6g039490 38.372 172 99 3 14 178 8 179 1.79e-32 117
MS.gene000694.t1 MTR_3g064390 40.800 125 74 0 16 140 12 136 1.81e-32 115
MS.gene000694.t1 MTR_3g096350 46.154 130 67 3 12 139 10 138 2.73e-32 114
MS.gene000694.t1 MTR_3g096350 47.107 121 61 3 12 130 10 129 1.99e-31 112
MS.gene000694.t1 MTR_1g097420 36.994 173 100 4 13 178 36 206 1.98e-30 112
MS.gene000694.t1 MTR_8g093740 42.029 138 78 2 45 180 10 147 2.24e-30 110
MS.gene000694.t1 MTR_7g103070 46.457 127 66 2 56 180 2 128 4.53e-29 107
MS.gene000694.t1 MTR_2g005500 30.928 194 94 1 12 205 7 160 3.04e-24 94.7
MS.gene000694.t1 MTR_3g107713 30.435 161 109 3 15 175 14 171 2.47e-22 90.9
MS.gene000694.t1 MTR_3g107717 27.041 196 139 4 15 209 14 206 2.55e-22 90.9
MS.gene000694.t1 MTR_3g107707 30.435 161 109 3 15 175 14 171 2.66e-22 90.9
MS.gene000694.t1 MTR_8g031810 40.777 103 47 1 13 115 5 93 3.70e-20 82.0
MS.gene000694.t1 MTR_1452s0010 45.570 79 43 0 34 112 1 79 4.87e-20 82.0
MS.gene000694.t1 MTR_1g069245 41.593 113 62 2 9 121 91 199 3.92e-19 82.8
MS.gene000694.t1 MTR_2g090875 30.460 174 107 5 14 175 6 177 2.68e-18 79.7
MS.gene000694.t1 MTR_3g078260 29.282 181 114 5 14 182 8 186 1.72e-17 77.8
MS.gene000694.t1 MTR_4g073250 27.624 181 117 5 14 182 6 184 7.83e-17 75.9
MS.gene000694.t1 MTR_8g075240 30.682 176 104 6 14 175 6 177 1.15e-16 75.5
MS.gene000694.t1 MTR_5g022600 29.885 174 108 5 14 175 6 177 1.19e-16 75.5
MS.gene000694.t1 MTR_2g078000 59.184 49 20 0 75 123 46 94 1.25e-16 72.8
MS.gene000694.t1 MTR_6g087980 29.282 181 114 5 14 182 6 184 2.40e-16 74.7
MS.gene000694.t1 MTR_4g088055 29.070 172 108 5 14 173 6 175 3.41e-16 74.3
MS.gene000694.t1 MTR_1686s0010 34.783 92 60 0 34 125 1 92 3.49e-16 71.2
MS.gene000694.t1 MTR_4g113620 24.699 166 113 4 15 180 14 167 1.35e-15 72.8
MS.gene000694.t1 MTR_3g053480 59.574 47 19 0 10 56 12 58 1.49e-12 61.2
MS.gene000694.t1 MTR_5g092060 24.118 170 119 4 15 177 105 271 2.20e-12 65.1
MS.gene000694.t1 MTR_8g099250 64.444 45 16 0 10 54 12 56 2.77e-12 60.5
MS.gene000694.t1 MTR_2g078560 55.556 45 20 0 76 120 54 98 3.74e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000694.t1 AT2G31680 83.871 217 33 2 4 219 2 217 1.51e-131 369
MS.gene000694.t1 AT1G05810 84.259 216 33 1 4 219 2 216 2.19e-131 369
MS.gene000694.t1 AT1G05810 84.259 216 33 1 4 219 48 262 3.05e-131 370
MS.gene000694.t1 AT2G43130 81.481 216 36 1 4 219 2 213 3.75e-127 358
MS.gene000694.t1 AT3G07410 78.095 210 45 1 10 219 8 216 1.65e-117 333
MS.gene000694.t1 AT5G47520 63.801 221 70 4 4 219 5 220 1.33e-95 278
MS.gene000694.t1 AT1G07410 55.769 208 88 2 12 219 10 213 2.22e-83 247
MS.gene000694.t1 AT3G12160 62.500 176 66 0 12 187 13 188 1.28e-82 245
MS.gene000694.t1 AT5G65270 64.740 173 61 0 12 184 15 187 1.46e-82 245
MS.gene000694.t1 AT4G18430 56.938 209 86 2 12 219 11 216 1.84e-82 244
MS.gene000694.t1 AT5G47960 65.318 173 60 0 12 184 13 185 2.03e-82 245
MS.gene000694.t1 AT5G60860 57.692 208 86 1 12 219 11 216 1.01e-81 243
MS.gene000694.t1 AT1G09630 53.365 208 95 1 12 219 10 215 1.58e-81 242
MS.gene000694.t1 AT4G39990 52.607 211 94 2 12 219 15 222 2.20e-81 242
MS.gene000694.t1 AT5G59150 63.158 171 63 0 12 182 10 180 7.21e-81 241
MS.gene000694.t1 AT1G16920 58.173 208 84 2 12 219 11 215 1.65e-80 240
MS.gene000694.t1 AT3G46830 62.573 171 64 0 12 182 10 180 7.55e-80 238
MS.gene000694.t1 AT3G46830 62.573 171 64 0 12 182 10 180 7.55e-80 238
MS.gene000694.t1 AT4G18800 63.429 175 64 0 12 186 11 185 9.09e-80 238
MS.gene000694.t1 AT5G45750 55.769 208 89 2 12 219 11 215 9.93e-80 238
MS.gene000694.t1 AT1G06400 58.470 183 76 0 12 194 11 193 2.44e-78 234
MS.gene000694.t1 AT1G28550 54.808 208 93 1 12 219 11 217 4.69e-78 234
MS.gene000694.t1 AT3G15060 54.808 208 92 1 12 219 11 216 8.10e-78 233
MS.gene000694.t1 AT2G33870 53.846 208 95 1 12 219 11 217 1.98e-77 232
MS.gene000694.t1 AT1G73640 58.140 172 72 0 12 183 11 182 4.97e-71 216
MS.gene000694.t1 AT1G18200 57.803 173 73 0 12 184 11 183 4.27e-70 214
MS.gene000694.t1 AT1G01200 51.905 210 97 3 12 217 26 235 5.09e-69 211
MS.gene000694.t1 AT4G17170 43.541 209 114 2 13 219 5 211 1.49e-58 184
MS.gene000694.t1 AT4G17160 44.175 206 109 2 13 218 5 204 6.15e-57 179
MS.gene000694.t1 AT4G35860 47.126 174 92 0 12 185 4 177 3.36e-56 178
MS.gene000694.t1 AT5G59150 60.630 127 50 0 56 182 3 129 4.87e-56 176
MS.gene000694.t1 AT3G11730 48.171 164 85 0 12 175 6 169 1.14e-50 163
MS.gene000694.t1 AT4G17530 49.682 157 79 0 12 168 6 162 1.49e-50 163
MS.gene000694.t1 AT1G02130 49.045 157 80 0 12 168 6 162 3.47e-50 162
MS.gene000694.t1 AT3G53610 39.904 208 118 4 12 218 13 214 2.43e-49 160
MS.gene000694.t1 AT3G53610 39.904 208 118 4 12 218 13 214 2.43e-49 160
MS.gene000694.t1 AT3G53610 39.904 208 118 4 12 218 13 214 2.43e-49 160
MS.gene000694.t1 AT3G09900 40.191 209 119 3 12 219 13 216 1.16e-48 159
MS.gene000694.t1 AT5G47200 49.045 157 80 0 12 168 6 162 1.38e-48 158
MS.gene000694.t1 AT3G46060 39.423 208 119 4 12 218 13 214 1.69e-48 158
MS.gene000694.t1 AT3G46060 39.423 208 119 4 12 218 13 214 1.69e-48 158
MS.gene000694.t1 AT3G46060 39.423 208 119 4 12 218 13 214 1.69e-48 158
MS.gene000694.t1 AT5G59840 38.942 208 120 4 12 218 13 214 3.61e-48 157
MS.gene000694.t1 AT5G03520 40.191 209 117 4 12 219 13 214 7.79e-48 157
MS.gene000694.t1 AT3G54840 44.186 172 91 2 16 186 35 202 6.22e-46 151
MS.gene000694.t1 AT3G54840 46.452 155 82 1 16 169 35 189 1.41e-45 150
MS.gene000694.t1 AT3G54840 43.860 171 91 2 17 186 2 168 1.41e-45 149
MS.gene000694.t1 AT4G19640 40.625 160 95 0 16 175 12 171 1.56e-44 147
MS.gene000694.t1 AT5G45130 38.725 204 110 4 16 219 12 200 6.24e-44 146
MS.gene000694.t1 AT5G45130 38.614 202 109 4 18 219 22 208 6.13e-43 144
MS.gene000694.t1 AT1G43890 46.199 171 89 3 12 180 11 180 1.88e-42 142
MS.gene000694.t1 AT1G43890 46.199 171 89 3 12 180 11 180 1.88e-42 142
MS.gene000694.t1 AT1G43890 46.199 171 89 3 12 180 11 180 1.88e-42 142
MS.gene000694.t1 AT4G35860 47.656 128 67 0 58 185 4 131 6.72e-42 140
MS.gene000694.t1 AT5G10260 38.854 157 96 0 15 171 10 166 3.50e-41 139
MS.gene000694.t1 AT2G22290 39.490 157 95 0 15 171 10 166 2.44e-40 137
MS.gene000694.t1 AT2G44610 35.784 204 125 3 15 217 10 208 4.36e-40 136
MS.gene000694.t1 AT4G39890 38.608 158 96 1 15 171 10 167 2.54e-39 135
MS.gene000694.t1 AT5G03530 45.062 162 86 3 10 169 9 169 8.68e-38 130
MS.gene000694.t1 AT5G03530 45.062 162 86 3 10 169 9 169 8.68e-38 130
MS.gene000694.t1 AT5G64990 36.585 164 104 0 15 178 8 171 1.05e-37 130
MS.gene000694.t1 AT5G03520 38.372 172 98 4 49 219 40 204 4.55e-37 129
MS.gene000694.t1 AT2G21880 41.975 162 87 3 14 168 9 170 6.15e-37 129
MS.gene000694.t1 AT1G22740 41.317 167 91 3 14 173 8 174 1.09e-36 127
MS.gene000694.t1 AT1G52280 37.791 172 100 3 14 178 8 179 2.46e-35 124
MS.gene000694.t1 AT3G18820 38.095 168 97 3 14 174 8 175 4.90e-35 123
MS.gene000694.t1 AT5G64990 35.088 171 104 1 15 178 8 178 5.96e-35 123
MS.gene000694.t1 AT4G09720 38.953 172 98 3 14 178 8 179 1.98e-34 122
MS.gene000694.t1 AT4G09720 38.418 177 97 4 14 178 8 184 1.09e-33 120
MS.gene000694.t1 AT4G19640 36.943 157 98 1 16 172 12 167 1.49e-33 119
MS.gene000694.t1 AT3G16100 37.209 172 101 3 14 178 8 179 2.34e-33 119
MS.gene000694.t1 AT4G19640 38.462 130 80 0 16 145 12 141 4.33e-33 117
MS.gene000694.t1 AT5G46025 54.717 106 47 1 76 180 6 111 9.24e-33 115
MS.gene000694.t1 AT4G09720 36.612 183 98 3 14 178 8 190 1.55e-32 117
MS.gene000694.t1 AT3G09910 39.535 172 101 3 10 179 9 179 4.61e-32 115
MS.gene000694.t1 AT3G09910 39.535 172 101 3 10 179 9 179 4.61e-32 115
MS.gene000694.t1 AT1G49300 37.654 162 94 3 14 168 8 169 7.77e-32 115
MS.gene000694.t1 AT1G49300 37.654 162 94 3 14 168 8 169 7.77e-32 115
MS.gene000694.t1 AT3G09910 35.648 216 113 5 10 219 9 204 1.07e-31 115
MS.gene000694.t1 AT3G09910 35.648 216 113 5 10 219 9 204 1.07e-31 115
MS.gene000694.t1 AT3G09910 35.648 216 113 5 10 219 9 204 1.07e-31 115
MS.gene000694.t1 AT5G39620 34.574 188 115 4 11 191 2 188 4.44e-30 110
MS.gene000694.t1 AT2G21880 40.000 145 80 3 31 168 1 145 1.69e-28 106
MS.gene000694.t1 AT2G21880 40.000 145 80 3 31 168 1 145 1.69e-28 106
MS.gene000694.t1 AT2G21880 37.037 162 87 4 14 168 9 162 4.95e-27 102
MS.gene000694.t1 AT4G09720 37.931 145 83 3 41 178 1 145 2.79e-23 92.4
MS.gene000694.t1 AT4G09720 37.931 145 83 3 41 178 1 145 2.79e-23 92.4
MS.gene000694.t1 AT4G09720 37.931 145 83 3 41 178 1 145 2.79e-23 92.4
MS.gene000694.t1 AT5G55080 29.193 161 111 3 15 175 14 171 3.87e-23 93.2
MS.gene000694.t1 AT5G20020 30.435 161 109 3 15 175 14 171 2.15e-22 91.3
MS.gene000694.t1 AT5G20010 30.435 161 109 3 15 175 14 171 3.26e-22 90.9
MS.gene000694.t1 AT5G55190 30.435 161 109 3 15 175 14 171 3.51e-22 90.9
MS.gene000694.t1 AT2G44690 33.333 180 106 6 14 181 18 195 3.66e-22 90.5
MS.gene000694.t1 AT4G35020 29.885 174 108 5 14 175 6 177 2.34e-17 77.4
MS.gene000694.t1 AT4G35020 29.885 174 108 5 14 175 6 177 2.34e-17 77.4
MS.gene000694.t1 AT4G35020 29.885 174 108 5 14 175 6 177 2.34e-17 77.4
MS.gene000694.t1 AT5G62880 29.310 174 109 5 14 175 8 179 2.50e-17 77.8
MS.gene000694.t1 AT5G45970 30.233 172 106 6 14 173 6 175 3.91e-17 77.0
MS.gene000694.t1 AT1G75840 30.682 176 104 6 14 175 6 177 1.27e-16 75.5
MS.gene000694.t1 AT3G48040 28.736 174 110 5 14 175 8 179 1.45e-16 75.5
MS.gene000694.t1 AT4G28950 28.492 179 116 5 14 182 6 182 1.92e-16 75.1
MS.gene000694.t1 AT4G35950 30.682 176 104 5 14 175 6 177 2.29e-16 74.7
MS.gene000694.t1 AT3G51300 30.233 172 106 5 16 175 8 177 2.38e-16 74.7
MS.gene000694.t1 AT2G17800 31.250 176 103 6 14 175 6 177 3.28e-16 74.3
MS.gene000694.t1 AT2G17800 31.250 176 103 6 14 175 6 177 3.28e-16 74.3
MS.gene000694.t1 AT1G20090 28.161 174 111 5 14 175 5 176 4.88e-16 73.9
MS.gene000694.t1 AT5G62880 31.655 139 85 4 14 151 8 137 4.89e-14 68.2
MS.gene000694.t1 AT4G08190 46.875 64 31 1 105 168 67 127 6.47e-14 66.6
MS.gene000694.t1 AT4G35020 33.333 114 73 3 16 128 8 119 2.24e-13 65.5
MS.gene000694.t1 AT4G35020 33.333 114 73 3 16 128 8 119 2.24e-13 65.5
MS.gene000694.t1 AT3G48040 31.034 145 90 4 14 157 8 143 2.35e-13 66.2

Find 36 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGTTAAAGCTCAGATT+TGG 0.265031 7.2:-93078844 MS.gene000694:CDS
TTCAACACCGATTGTTGCTT+TGG 0.283469 7.2:+93078898 None:intergenic
TTTCATGGAAACCTCTGCTT+TGG 0.343525 7.2:-93077356 MS.gene000694:CDS
AAAATAGCCTTTGCTTTGCT+TGG 0.356179 7.2:+93077189 None:intergenic
AGGCTGAATTATCTGTCAAC+AGG 0.387029 7.2:-93077243 MS.gene000694:CDS
CTCTTCAAAGTCGTTATAAT+CGG 0.405340 7.2:-93078986 MS.gene000694:CDS
AGAAGTTAAAGCTCAGATTT+GGG 0.412522 7.2:-93078843 MS.gene000694:CDS
GGTGGGAAACAAGTGTGATT+TGG 0.440037 7.2:-93077440 MS.gene000694:CDS
GCTTATTATCGTGGTGCTGT+TGG 0.462704 7.2:-93078782 MS.gene000694:CDS
AGCGTATCGTGAGAGGAGAT+TGG 0.495642 7.2:+93078943 None:intergenic
AGATATACAACAATGTTAGC+AGG 0.522828 7.2:-93077291 MS.gene000694:CDS
CTTCATTCCAAAGCAACAAT+CGG 0.533300 7.2:-93078905 MS.gene000694:CDS
GTTACTTCTGCTTATTATCG+TGG 0.541558 7.2:-93078791 MS.gene000694:CDS
CCTCAACTCAGACACTTACA+AGG 0.545261 7.2:-93077263 MS.gene000694:CDS
AGTTCAGAAGACGAAGGAGG+AGG 0.552796 7.2:-93079019 MS.gene000694:CDS
AAAAGTCTTGCGGAATCAGA+AGG 0.554276 7.2:-93077385 MS.gene000694:CDS
GCTCAGATTTGGGATACTGC+TGG 0.571910 7.2:-93078833 MS.gene000694:CDS
TACGACGGTGGCAATGATGC+TGG 0.577423 7.2:-93077461 MS.gene000694:CDS
ATAATCGGCGACTCCGCCGT+TGG 0.581766 7.2:-93078971 MS.gene000694:CDS
AGAGATGTGAGCATTGAAGA+AGG 0.582505 7.2:-93077409 MS.gene000694:CDS
CCTTGTAAGTGTCTGAGTTG+AGG 0.585872 7.2:+93077263 None:intergenic
CGTTGCGAGCGTATCGTGAG+AGG 0.597765 7.2:+93078936 None:intergenic
ATTTGTAGAGTCCAAAGCAG+AGG 0.603895 7.2:+93077345 None:intergenic
GAGGAGATTGGATTTACCAA+CGG 0.633949 7.2:+93078955 None:intergenic
TCTACATCCAAGCAAAGCAA+AGG 0.634847 7.2:-93077196 MS.gene000694:CDS
TGAAGAAGGCAAAAGTCTTG+CGG 0.635809 7.2:-93077395 MS.gene000694:CDS
GGCTGAATTATCTGTCAACA+GGG 0.647451 7.2:-93077242 MS.gene000694:CDS
TCAAGTTCAGAAGACGAAGG+AGG 0.656404 7.2:-93079022 MS.gene000694:CDS
AGGGTCAGTCTTGTTAACAA+TGG 0.671243 7.2:-93077223 MS.gene000694:CDS
ATACAACAATGTTAGCAGGA+AGG 0.674114 7.2:-93077287 MS.gene000694:CDS
GACGGTGGCAATGATGCTGG+TGG 0.677201 7.2:-93077458 MS.gene000694:CDS
TGCAGCTCATTGTGATACGA+CGG 0.692981 7.2:-93077476 MS.gene000694:intron
AGCTCATTGTGATACGACGG+TGG 0.708088 7.2:-93077473 MS.gene000694:CDS
GAGATTGGATTTACCAACGG+CGG 0.710073 7.2:+93078958 None:intergenic
ACGGTGGCAATGATGCTGGT+GGG 0.711154 7.2:-93077457 MS.gene000694:CDS
ATGTCAAGTTCAGAAGACGA+AGG 0.732589 7.2:-93079025 MS.gene000694:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATTTGATTACA+TGG - chr7.2:93077823-93077842 MS.gene000694:intron 10.0%
!! TAAAAATCATAACTAATTCA+AGG + chr7.2:93077638-93077657 None:intergenic 15.0%
!!! TAATTAATCTCACATTTTAA+AGG - chr7.2:93077738-93077757 MS.gene000694:intron 15.0%
!! AAAACTATGTATAATTGCTA+TGG - chr7.2:93078595-93078614 MS.gene000694:intron 20.0%
!! AACACTTACTATTAGAAATA+TGG + chr7.2:93078449-93078468 None:intergenic 20.0%
!! AGTCTATATATACTTTCTAT+AGG + chr7.2:93077961-93077980 None:intergenic 20.0%
!! TACTAGTATATATCAATGAT+AGG - chr7.2:93078082-93078101 MS.gene000694:intron 20.0%
!!! AGTTATGATTTTTAGTAGTT+AGG - chr7.2:93077644-93077663 MS.gene000694:intron 20.0%
!!! ATGTTATGTTACTATGTTTT+TGG - chr7.2:93077573-93077592 MS.gene000694:intron 20.0%
!!! ATTATACATAGTTTTTAGAG+AGG + chr7.2:93078590-93078609 None:intergenic 20.0%
! AAGGGTGGAATTAAATTAAT+TGG - chr7.2:93078033-93078052 MS.gene000694:intron 25.0%
! AAGTATATATAGACTCTGTT+TGG - chr7.2:93077966-93077985 MS.gene000694:intron 25.0%
! AATGTTAAGCACAAATATGT+AGG + chr7.2:93078340-93078359 None:intergenic 25.0%
! ATGTTAAGCACAAATATGTA+GGG + chr7.2:93078339-93078358 None:intergenic 25.0%
! CTTACTATTAGAAATATGGA+AGG + chr7.2:93078445-93078464 None:intergenic 25.0%
!!! AGTGCATTTTGAAAACTAAA+AGG + chr7.2:93078301-93078320 None:intergenic 25.0%
!!! CAATTTCTCCTAGTTTTTAT+AGG + chr7.2:93078235-93078254 None:intergenic 25.0%
!!! GTGCATTTTGAAAACTAAAA+GGG + chr7.2:93078300-93078319 None:intergenic 25.0%
!!! TAATCTCACATTTTAAAGGA+AGG - chr7.2:93077742-93077761 MS.gene000694:intron 25.0%
!!! TGCATTTTGAAAACTAAAAG+GGG + chr7.2:93078299-93078318 None:intergenic 25.0%
!!! TGTTACTATGTTTTTGGTTT+TGG - chr7.2:93077579-93077598 MS.gene000694:intron 25.0%
!!! TTTTTTTTTAGTGAGGATAC+AGG - chr7.2:93078490-93078509 MS.gene000694:intron 25.0%
AAAAACACTAGAGTACATTC+AGG - chr7.2:93078394-93078413 MS.gene000694:intron 30.0%
AAGAAGTTAAAGCTCAGATT+TGG - chr7.2:93077355-93077374 MS.gene000694:CDS 30.0%
AGAAGTTAAAGCTCAGATTT+GGG - chr7.2:93077356-93077375 MS.gene000694:CDS 30.0%
AGATATACAACAATGTTAGC+AGG - chr7.2:93078908-93078927 MS.gene000694:CDS 30.0%
CTATGGTTAATTGTGATTGT+GGG - chr7.2:93078612-93078631 MS.gene000694:intron 30.0%
CTCTTCAAAGTCGTTATAAT+CGG - chr7.2:93077213-93077232 MS.gene000694:CDS 30.0%
TAGGAAGTTACTTGATTACA+TGG - chr7.2:93078101-93078120 MS.gene000694:intron 30.0%
TGTGAAGACCTATAAAAACT+AGG - chr7.2:93078224-93078243 MS.gene000694:intron 30.0%
TTGTGAAAAAATGTTCGATG+TGG - chr7.2:93078467-93078486 MS.gene000694:intron 30.0%
! GATTACATGGTTTGAAATTG+AGG - chr7.2:93077836-93077855 MS.gene000694:intron 30.0%
!! ATCAGAAGGTTTGTTTTTCA+TGG - chr7.2:93078828-93078847 MS.gene000694:CDS 30.0%
!! TTTTAAAGGAAGGAAAGAGA+TGG - chr7.2:93077752-93077771 MS.gene000694:intron 30.0%
!!! GAATGTACTCTAGTGTTTTT+TGG + chr7.2:93078394-93078413 None:intergenic 30.0%
!!! GATGTGGTTTTTTTTTAGTG+AGG - chr7.2:93078483-93078502 MS.gene000694:intron 30.0%
AAAATAGCCTTTGCTTTGCT+TGG + chr7.2:93079013-93079032 None:intergenic 35.0%
AAACTTTGATATTGCGGTTG+CGG - chr7.2:93078146-93078165 MS.gene000694:intron 35.0%
AATCTCACTAGTACACTCTA+AGG - chr7.2:93078014-93078033 MS.gene000694:intron 35.0%
AATGCCTAAGTATAGCTAGA+AGG - chr7.2:93078666-93078685 MS.gene000694:intron 35.0%
ATACAACAATGTTAGCAGGA+AGG - chr7.2:93078912-93078931 MS.gene000694:CDS 35.0%
ATCTCACTAGTACACTCTAA+GGG - chr7.2:93078015-93078034 MS.gene000694:intron 35.0%
CGTTTAAAGAGATCTCATGT+AGG - chr7.2:93078552-93078571 MS.gene000694:intron 35.0%
CTTCATTCCAAAGCAACAAT+CGG - chr7.2:93077294-93077313 MS.gene000694:CDS 35.0%
GCTATGGTTAATTGTGATTG+TGG - chr7.2:93078611-93078630 MS.gene000694:intron 35.0%
GTTACTTCTGCTTATTATCG+TGG - chr7.2:93077408-93077427 MS.gene000694:CDS 35.0%
TTTGCCAATGTGGTTGTAAT+TGG - chr7.2:93078187-93078206 MS.gene000694:intron 35.0%
! GAGCAAATATTTTGCCAATG+TGG - chr7.2:93078177-93078196 MS.gene000694:intron 35.0%
! TCAACCTTCTAGCTATACTT+AGG + chr7.2:93078673-93078692 None:intergenic 35.0%
!!! AGAACTACTTTTGATAGCGT+TGG - chr7.2:93077468-93077487 MS.gene000694:CDS 35.0%
!!! TTTTTTAGTGAGGATACAGG+AGG - chr7.2:93078493-93078512 MS.gene000694:intron 35.0%
AAAAGTCTTGCGGAATCAGA+AGG - chr7.2:93078814-93078833 MS.gene000694:CDS 40.0%
AGCACCAATTACAACCACAT+TGG + chr7.2:93078194-93078213 None:intergenic 40.0%
AGGCTGAATTATCTGTCAAC+AGG - chr7.2:93078956-93078975 MS.gene000694:CDS 40.0%
AGGTCTAGTTATGTTCCTAG+CGG + chr7.2:93078425-93078444 None:intergenic 40.0%
ATGAGCAAATATGGCAGATG+TGG - chr7.2:93077903-93077922 MS.gene000694:intron 40.0%
ATGTCAAGTTCAGAAGACGA+AGG - chr7.2:93077174-93077193 MS.gene000694:CDS 40.0%
ATTTGTAGAGTCCAAAGCAG+AGG + chr7.2:93078857-93078876 None:intergenic 40.0%
CGCTGCAAACTTTGATATTG+CGG - chr7.2:93078140-93078159 MS.gene000694:intron 40.0%
CGGCAAAGTATGAGCAAATA+TGG - chr7.2:93077894-93077913 MS.gene000694:intron 40.0%
GAGGAGATTGGATTTACCAA+CGG + chr7.2:93077247-93077266 None:intergenic 40.0%
GGCTGAATTATCTGTCAACA+GGG - chr7.2:93078957-93078976 MS.gene000694:CDS 40.0%
TCTACATCCAAGCAAAGCAA+AGG - chr7.2:93079003-93079022 MS.gene000694:CDS 40.0%
TGAAGAAGGCAAAAGTCTTG+CGG - chr7.2:93078804-93078823 MS.gene000694:CDS 40.0%
TGCCGCAAACTTTGATATTG+CGG - chr7.2:93077874-93077893 MS.gene000694:intron 40.0%
TGCCGCAATATCAAAGTTTG+CGG + chr7.2:93077879-93077898 None:intergenic 40.0%
TTTCATGGAAACCTCTGCTT+TGG - chr7.2:93078843-93078862 MS.gene000694:CDS 40.0%
TTTGCGGCAAAACTATAACC+AGG + chr7.2:93077863-93077882 None:intergenic 40.0%
! ATGGTTTGAAATTGAGGTCC+TGG - chr7.2:93077842-93077861 MS.gene000694:intron 40.0%
! CACAAATATGTAGGGAGTAC+AGG + chr7.2:93078331-93078350 None:intergenic 40.0%
! TTCAACACCGATTGTTGCTT+TGG + chr7.2:93077304-93077323 None:intergenic 40.0%
!! AGAGATGTGAGCATTGAAGA+AGG - chr7.2:93078790-93078809 MS.gene000694:CDS 40.0%
!! AGGGTCAGTCTTGTTAACAA+TGG - chr7.2:93078976-93078995 MS.gene000694:CDS 40.0%
!! TGTGAAGACAGCTTTTGAGA+TGG - chr7.2:93078876-93078895 MS.gene000694:CDS 40.0%
CCTCAACTCAGACACTTACA+AGG - chr7.2:93078936-93078955 MS.gene000694:CDS 45.0%
CCTTGTAAGTGTCTGAGTTG+AGG + chr7.2:93078939-93078958 None:intergenic 45.0%
GAGATTGGATTTACCAACGG+CGG + chr7.2:93077244-93077263 None:intergenic 45.0%
GGTGGGAAACAAGTGTGATT+TGG - chr7.2:93078759-93078778 MS.gene000694:CDS 45.0%
GTGTCAGATAGAGACGTAAC+AGG + chr7.2:93078368-93078387 None:intergenic 45.0%
TCAAGTTCAGAAGACGAAGG+AGG - chr7.2:93077177-93077196 MS.gene000694:CDS 45.0%
TGCAGCTCATTGTGATACGA+CGG - chr7.2:93078723-93078742 MS.gene000694:CDS 45.0%
! AATTGCATTGACCTCCTCTG+AGG - chr7.2:93078250-93078269 MS.gene000694:intron 45.0%
! TCACTAGTACACTCTAAGGG+TGG - chr7.2:93078018-93078037 MS.gene000694:intron 45.0%
!! GCTTATTATCGTGGTGCTGT+TGG - chr7.2:93077417-93077436 MS.gene000694:CDS 45.0%
!!! CTTTTGATAGCGTTGGTCGT+TGG - chr7.2:93077475-93077494 MS.gene000694:intron 45.0%
AGCGTATCGTGAGAGGAGAT+TGG + chr7.2:93077259-93077278 None:intergenic 50.0%
AGCTCATTGTGATACGACGG+TGG - chr7.2:93078726-93078745 MS.gene000694:CDS 50.0%
AGTTCAGAAGACGAAGGAGG+AGG - chr7.2:93077180-93077199 MS.gene000694:CDS 50.0%
CACTTAGTGAGACACCTCAG+AGG + chr7.2:93078267-93078286 None:intergenic 50.0%
TTAGTGAGACACCTCAGAGG+AGG + chr7.2:93078264-93078283 None:intergenic 50.0%
! ATATGTAGGGAGTACAGGCG+AGG + chr7.2:93078326-93078345 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG - chr7.2:93077366-93077385 MS.gene000694:CDS 50.0%
!! TACATTCAGGTTGTGCCGCT+AGG - chr7.2:93078407-93078426 MS.gene000694:intron 50.0%
ACGGTGGCAATGATGCTGGT+GGG - chr7.2:93078742-93078761 MS.gene000694:CDS 55.0%
TACGACGGTGGCAATGATGC+TGG - chr7.2:93078738-93078757 MS.gene000694:CDS 55.0%
ATAATCGGCGACTCCGCCGT+TGG - chr7.2:93077228-93077247 MS.gene000694:CDS 60.0%
CGTTGCGAGCGTATCGTGAG+AGG + chr7.2:93077266-93077285 None:intergenic 60.0%
GACGGTGGCAATGATGCTGG+TGG - chr7.2:93078741-93078760 MS.gene000694:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 93077174 93079047 93077174 ID=MS.gene000694
chr7.2 mRNA 93077174 93079047 93077174 ID=MS.gene000694.t1;Parent=MS.gene000694
chr7.2 exon 93078708 93079047 93078708 ID=MS.gene000694.t1.exon1;Parent=MS.gene000694.t1
chr7.2 CDS 93078708 93079047 93078708 ID=cds.MS.gene000694.t1;Parent=MS.gene000694.t1
chr7.2 exon 93077174 93077493 93077174 ID=MS.gene000694.t1.exon2;Parent=MS.gene000694.t1
chr7.2 CDS 93077174 93077493 93077174 ID=cds.MS.gene000694.t1;Parent=MS.gene000694.t1
Gene Sequence

>MS.gene000694

ATGTCAAGTTCAGAAGACGAAGGAGGAGGAGAAGAATATCTCTTCAAAGTCGTTATAATCGGCGACTCCGCCGTTGGTAAATCCAATCTCCTCTCACGATACGCTCGCAACGAGTTCAATCTTCATTCCAAAGCAACAATCGGTGTTGAATTTCAAACTCAGAGCTTAGAAATTGATTCTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGTTTTCGTGCTGTTACTTCTGCTTATTATCGTGGTGCTGTTGGTGCTCTTGTTGTTTATGATATTTCTCGCAGAACTACTTTTGATAGCGTTGGTCGTTGGCTCGATGAACTCAAGAGTCAGTAGTGCTTTCTTCTATTTCTAGATCTGATCTTTTAGTTAATTTAATTCACTCTTATGTTATGTTACTATGTTTTTGGTTTTGGATCTCGTACATTGTTATAGTGATTTTGTTTATACCTTGAATTAGTTATGATTTTTAGTAGTTAGGTTATGTTAATCTTGATTTTGCTATGTGAAATTGACTGCGTTGATTATATATAATCTTAATTGTTCATAGCTTAATTAATCTCACATTTTAAAGGAAGGAAAGAGATGGATGATACAAAAGTGAATTATGTATCTATGAGAAAAAAATTATGATATATATATATATATTTGATTACATGGTTTGAAATTGAGGTCCTGGTTATAGTTTTGCCGCAAACTTTGATATTGCGGCAAAGTATGAGCAAATATGGCAGATGTGGTCGTCATTGCTGCTGTCATTATGTCGTGATGACCTATAGAAAGTATATATAGACTCTGTTTGGATAATCTGCTTGCAGTTTGTAGTATAATCTCACTAGTACACTCTAAGGGTGGAATTAAATTAATTGGAAAGAAATAGATAATAAAACTTGAACTACTAGTATATATCAATGATAGGAAGTTACTTGATTACATGGTTCGAAATTGCAGTCGCGCTGCAAACTTTGATATTGCGGTTGCGGCAAAATATGAGCAAATATTTTGCCAATGTGGTTGTAATTGGTGCTGTCATGATGTTGTGAAGACCTATAAAAACTAGGAGAAATTGCATTGACCTCCTCTGAGGTGTCTCACTAAGTGACACTCACACCCCTTTTAGTTTTCAAAATGCACTCACCTCGCCTGTACTCCCTACATATTTGTGCTTAACATTTTTTTCCTGTTACGTCTCTATCTGACACTCACCAAAAAACACTAGAGTACATTCAGGTTGTGCCGCTAGGAACATAACTAGACCTTCCATATTTCTAATAGTAAGTGTTGTGAAAAAATGTTCGATGTGGTTTTTTTTTAGTGAGGATACAGGAGGTGAGTGCTTTTTGAATATCAGAGAGCTTGTCAATGTCGTTTAAAGAGATCTCATGTAGGTCAATGCAGTTTCCTCTCTAAAAACTATGTATAATTGCTATGGTTAATTGTGATTGTGGGCTGTAATTTAAAACTGTTTGATTATATAATTAATGCCTAAGTATAGCTAGAAGGTTGAAGTTTTTGTTTGTTTGATAACTGTGATGCATGCAGCTCATTGTGATACGACGGTGGCAATGATGCTGGTGGGAAACAAGTGTGATTTGGATAATATAAGAGATGTGAGCATTGAAGAAGGCAAAAGTCTTGCGGAATCAGAAGGTTTGTTTTTCATGGAAACCTCTGCTTTGGACTCTACAAATGTGAAGACAGCTTTTGAGATGGTTATTAGAGAGATATACAACAATGTTAGCAGGAAGGTCCTCAACTCAGACACTTACAAGGCTGAATTATCTGTCAACAGGGTCAGTCTTGTTAACAATGGCAACTCTACATCCAAGCAAAGCAAAGGCTATTTTTCTTGCTGTTCCTGA

Protein sequence

>MS.gene000694.t1

MSSSEDEGGGEEYLFKVVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNKCDLDNIRDVSIEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGNSTSKQSKGYFSCCS