AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005920.t1 MTR_1g094220 99.024 205 1 1 1 205 1 204 4.83e-150 414
MS.gene005920.t1 MTR_1g094220 98.421 190 2 1 1 190 1 189 6.24e-138 384
MS.gene005920.t1 MTR_1g094220 98.936 188 1 1 1 188 1 187 1.04e-136 381
MS.gene005920.t1 MTR_1g094220 98.936 188 1 1 1 188 1 187 7.62e-136 380
MS.gene005920.t1 MTR_3g064390 63.975 161 57 1 30 190 8 167 1.29e-73 221
MS.gene005920.t1 MTR_5g076590 62.353 170 59 2 30 199 8 172 1.83e-73 221
MS.gene005920.t1 MTR_2g102060 59.877 162 64 1 29 190 7 167 2.65e-69 210
MS.gene005920.t1 MTR_8g103550 56.024 166 72 1 25 190 2 166 8.72e-69 209
MS.gene005920.t1 MTR_3g064390 66.154 130 43 1 30 159 8 136 5.05e-59 182
MS.gene005920.t1 MTR_2g005510 48.171 164 84 1 25 188 8 170 1.47e-50 163
MS.gene005920.t1 MTR_8g089985 47.126 174 87 2 22 191 3 175 2.28e-50 163
MS.gene005920.t1 MTR_8g036220 50.000 154 76 1 34 187 18 170 6.51e-50 162
MS.gene005920.t1 MTR_2g075950 47.468 158 82 1 34 191 15 171 7.37e-49 159
MS.gene005920.t1 MTR_2g083860 46.203 158 84 1 34 191 15 171 1.18e-48 158
MS.gene005920.t1 MTR_3g087160 47.170 159 83 1 32 190 9 166 1.20e-48 158
MS.gene005920.t1 MTR_3g086980 48.101 158 81 1 34 191 18 174 2.05e-48 157
MS.gene005920.t1 MTR_8g090215 47.170 159 83 1 32 190 9 166 2.09e-48 157
MS.gene005920.t1 MTR_4g064897 48.101 158 81 1 34 191 14 170 2.53e-48 157
MS.gene005920.t1 MTR_5g013900 47.170 159 83 1 32 190 9 166 2.65e-48 157
MS.gene005920.t1 MTR_3g069510 48.101 158 81 1 34 191 14 170 6.20e-48 156
MS.gene005920.t1 MTR_6g021790 42.857 154 87 1 34 187 8 160 2.05e-47 155
MS.gene005920.t1 MTR_8g031660 42.857 154 87 1 34 187 8 160 1.42e-46 152
MS.gene005920.t1 MTR_2g014990 46.203 158 84 1 34 191 15 171 2.00e-46 152
MS.gene005920.t1 MTR_8g031870 44.156 154 85 1 34 187 8 160 5.46e-46 150
MS.gene005920.t1 MTR_2g027660 42.208 154 88 1 34 187 8 160 7.12e-46 151
MS.gene005920.t1 MTR_4g098950 45.283 159 86 1 32 190 9 166 7.32e-46 150
MS.gene005920.t1 MTR_4g079350 45.570 158 85 1 34 191 15 171 8.84e-46 151
MS.gene005920.t1 MTR_4g088090 44.937 158 86 1 34 191 15 171 1.11e-45 150
MS.gene005920.t1 MTR_0262s0050 45.570 158 85 1 34 191 17 173 1.50e-45 150
MS.gene005920.t1 MTR_7g405790 42.941 170 96 1 34 203 17 185 1.64e-45 150
MS.gene005920.t1 MTR_1g052475 44.937 158 86 1 34 191 17 173 2.14e-45 150
MS.gene005920.t1 MTR_7g051940 42.941 170 96 1 34 203 15 183 2.93e-45 149
MS.gene005920.t1 MTR_8g031680 42.857 154 87 1 34 187 8 160 3.29e-45 149
MS.gene005920.t1 MTR_2g090865 44.937 158 86 1 34 191 13 169 1.79e-44 147
MS.gene005920.t1 MTR_1g078200 43.275 171 91 2 34 204 16 180 3.52e-44 147
MS.gene005920.t1 MTR_1g068730 45.283 159 85 2 33 190 16 173 7.51e-44 146
MS.gene005920.t1 MTR_1g068740 45.283 159 85 2 33 190 16 173 1.06e-43 145
MS.gene005920.t1 MTR_1g115325 45.283 159 85 2 33 190 16 173 1.20e-43 145
MS.gene005920.t1 MTR_7g100020 45.283 159 85 2 33 190 16 173 1.69e-43 145
MS.gene005920.t1 MTR_8g027220 44.785 163 89 1 34 196 28 189 4.34e-43 144
MS.gene005920.t1 MTR_8g031830 41.250 160 92 2 34 192 8 166 6.58e-43 143
MS.gene005920.t1 MTR_6g079550 44.937 158 86 1 34 191 14 170 2.45e-42 142
MS.gene005920.t1 MTR_8g006970 43.506 154 86 1 34 187 10 162 1.50e-41 139
MS.gene005920.t1 MTR_8g006970 43.506 154 86 1 34 187 24 176 3.26e-41 139
MS.gene005920.t1 MTR_4g063160 44.720 161 85 3 33 190 16 175 3.49e-41 139
MS.gene005920.t1 MTR_7g081700 42.857 154 87 1 34 187 10 162 3.59e-41 139
MS.gene005920.t1 MTR_2g005500 40.909 154 90 1 34 187 11 163 1.66e-38 132
MS.gene005920.t1 MTR_2g096550 41.420 169 96 3 33 199 16 183 2.56e-38 132
MS.gene005920.t1 MTR_8g093740 39.884 173 100 4 21 191 2 172 1.00e-37 130
MS.gene005920.t1 MTR_1g068730 43.077 130 73 1 33 162 16 144 4.32e-36 124
MS.gene005920.t1 MTR_1g068740 44.800 125 68 1 33 157 16 139 1.13e-35 124
MS.gene005920.t1 MTR_3g096350 41.250 160 90 4 34 191 14 171 2.43e-35 124
MS.gene005920.t1 MTR_8g107070 44.304 158 87 1 34 191 16 172 3.41e-35 125
MS.gene005920.t1 MTR_7g103070 38.037 163 98 3 30 190 14 175 1.19e-34 122
MS.gene005920.t1 MTR_1g029450 40.000 160 92 4 34 191 19 176 3.95e-34 121
MS.gene005920.t1 MTR_7g117910 40.426 141 83 1 34 174 22 161 6.97e-34 120
MS.gene005920.t1 MTR_1g062760 37.805 164 96 5 30 190 12 172 1.33e-32 117
MS.gene005920.t1 MTR_1g090717 39.752 161 91 5 34 190 17 175 6.53e-32 115
MS.gene005920.t1 MTR_4g099470 41.935 124 71 1 64 187 16 138 2.51e-31 112
MS.gene005920.t1 MTR_2g101890 33.516 182 113 4 29 203 7 187 5.30e-29 107
MS.gene005920.t1 MTR_4g069850 35.152 165 99 4 33 190 9 172 1.79e-28 106
MS.gene005920.t1 MTR_1g097420 37.037 162 94 4 33 187 9 169 2.59e-28 105
MS.gene005920.t1 MTR_4g012940 33.146 178 111 4 29 199 5 181 4.05e-28 105
MS.gene005920.t1 MTR_8g092020 34.940 166 100 5 29 187 9 173 5.04e-27 102
MS.gene005920.t1 MTR_8g093740 39.231 130 76 3 64 191 11 139 1.44e-26 100
MS.gene005920.t1 MTR_7g103070 41.441 111 63 2 82 190 9 119 4.25e-26 99.0
MS.gene005920.t1 MTR_3g078260 35.119 168 94 5 33 188 9 173 3.96e-25 97.8
MS.gene005920.t1 MTR_2g090875 34.320 169 94 7 33 188 7 171 2.50e-23 92.8
MS.gene005920.t1 MTR_3g096350 41.525 118 65 4 34 149 14 129 5.50e-23 90.5
MS.gene005920.t1 MTR_3g096350 41.525 118 65 4 34 149 14 129 6.97e-23 90.1
MS.gene005920.t1 MTR_4g088055 32.571 175 101 7 33 194 7 177 9.79e-23 91.3
MS.gene005920.t1 MTR_6g087980 32.164 171 101 6 33 191 7 174 1.29e-22 91.3
MS.gene005920.t1 MTR_4g073250 33.140 172 98 7 33 191 7 174 1.85e-22 90.5
MS.gene005920.t1 MTR_1g097420 35.526 152 90 4 43 187 46 196 2.05e-22 91.3
MS.gene005920.t1 MTR_8g075240 33.728 169 95 7 33 188 7 171 4.36e-22 89.4
MS.gene005920.t1 MTR_5g022600 32.544 169 97 7 33 188 7 171 7.47e-22 89.0
MS.gene005920.t1 MTR_6g039490 33.333 165 96 5 33 187 9 169 5.46e-21 87.0
MS.gene005920.t1 MTR_3g078260 37.931 116 68 3 33 147 9 121 2.10e-18 78.6
MS.gene005920.t1 MTR_3g107717 30.519 154 103 4 34 187 15 164 2.14e-18 80.1
MS.gene005920.t1 MTR_3g107707 30.519 154 103 4 34 187 15 164 2.52e-18 80.1
MS.gene005920.t1 MTR_3g107713 30.519 154 103 4 34 187 15 164 2.92e-18 79.7
MS.gene005920.t1 MTR_4g113620 28.571 154 97 5 34 187 15 155 9.39e-15 70.1
MS.gene005920.t1 MTR_8g031810 31.683 101 54 2 36 136 10 95 2.88e-14 66.2
MS.gene005920.t1 MTR_1452s0010 37.349 83 51 1 52 134 1 82 4.40e-14 65.9
MS.gene005920.t1 MTR_5g092060 26.404 178 120 5 21 191 93 266 6.67e-12 63.5
MS.gene005920.t1 MTR_1686s0010 35.000 80 51 1 52 131 1 79 1.23e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005920.t1 AT3G54840 86.911 191 24 1 1 190 1 191 1.37e-119 337
MS.gene005920.t1 AT3G54840 87.302 189 23 1 1 188 1 189 4.49e-119 336
MS.gene005920.t1 AT3G54840 92.949 156 11 0 35 190 2 157 8.80e-106 301
MS.gene005920.t1 AT4G19640 59.259 162 65 1 29 190 7 167 1.40e-68 208
MS.gene005920.t1 AT5G45130 59.259 162 65 1 29 190 7 167 1.49e-67 206
MS.gene005920.t1 AT5G45130 59.355 155 62 1 36 190 22 175 1.56e-63 196
MS.gene005920.t1 AT4G19640 59.542 131 52 1 29 159 7 136 2.37e-53 168
MS.gene005920.t1 AT4G19640 59.542 131 52 1 29 159 7 136 1.25e-52 167
MS.gene005920.t1 AT1G09630 50.000 158 78 1 34 191 14 170 8.27e-51 164
MS.gene005920.t1 AT1G07410 47.093 172 90 1 34 205 14 184 1.76e-49 160
MS.gene005920.t1 AT3G46830 48.101 158 81 1 34 191 14 170 2.46e-48 157
MS.gene005920.t1 AT3G46830 48.101 158 81 1 34 191 14 170 2.46e-48 157
MS.gene005920.t1 AT4G39990 45.570 158 85 1 34 191 19 175 3.83e-48 157
MS.gene005920.t1 AT5G59150 47.468 158 82 1 34 191 14 170 1.10e-47 155
MS.gene005920.t1 AT3G15060 47.468 158 82 1 34 191 15 171 1.61e-47 155
MS.gene005920.t1 AT1G16920 46.835 158 83 1 34 191 15 171 1.92e-47 155
MS.gene005920.t1 AT5G10260 45.912 159 85 1 32 190 9 166 2.30e-47 154
MS.gene005920.t1 AT5G65270 46.203 158 84 1 34 191 19 175 2.45e-47 155
MS.gene005920.t1 AT4G18430 45.570 158 85 1 34 191 15 171 5.90e-47 154
MS.gene005920.t1 AT2G22290 45.912 159 85 1 32 190 9 166 6.18e-47 154
MS.gene005920.t1 AT5G45750 44.937 158 86 1 34 191 15 171 8.66e-47 153
MS.gene005920.t1 AT3G07410 46.835 158 83 1 34 191 14 170 1.12e-46 153
MS.gene005920.t1 AT5G60860 46.203 158 84 1 34 191 15 171 2.03e-46 152
MS.gene005920.t1 AT2G43130 44.937 158 86 1 34 191 14 170 2.34e-46 152
MS.gene005920.t1 AT2G44610 45.912 159 85 1 32 190 9 166 3.38e-46 152
MS.gene005920.t1 AT4G39890 43.750 160 88 2 32 190 9 167 5.50e-46 151
MS.gene005920.t1 AT4G35860 41.558 154 89 1 34 187 8 160 6.76e-46 151
MS.gene005920.t1 AT3G12160 45.570 158 85 1 34 191 17 173 7.00e-46 151
MS.gene005920.t1 AT4G17160 42.308 156 89 1 32 187 6 160 7.61e-46 150
MS.gene005920.t1 AT2G33870 45.570 158 85 1 34 191 15 171 1.05e-45 150
MS.gene005920.t1 AT1G28550 45.570 158 85 1 34 191 15 171 1.62e-45 150
MS.gene005920.t1 AT4G18800 43.038 158 89 1 34 191 15 171 2.18e-45 150
MS.gene005920.t1 AT5G47960 46.104 154 82 1 34 187 17 169 2.20e-45 150
MS.gene005920.t1 AT4G17170 41.558 154 89 1 34 187 8 160 4.00e-45 149
MS.gene005920.t1 AT1G06400 44.304 158 87 1 34 191 15 171 6.67e-45 149
MS.gene005920.t1 AT5G47520 42.442 172 98 1 34 205 16 186 9.34e-45 148
MS.gene005920.t1 AT5G64990 45.223 157 85 1 34 190 9 164 2.07e-44 147
MS.gene005920.t1 AT1G05810 43.671 158 88 1 34 191 14 170 1.20e-43 145
MS.gene005920.t1 AT3G53610 45.912 159 84 2 33 190 16 173 1.29e-43 145
MS.gene005920.t1 AT3G53610 45.912 159 84 2 33 190 16 173 1.29e-43 145
MS.gene005920.t1 AT3G53610 45.912 159 84 2 33 190 16 173 1.29e-43 145
MS.gene005920.t1 AT3G46060 45.283 159 85 2 33 190 16 173 1.87e-43 145
MS.gene005920.t1 AT3G46060 45.283 159 85 2 33 190 16 173 1.87e-43 145
MS.gene005920.t1 AT3G46060 45.283 159 85 2 33 190 16 173 1.87e-43 145
MS.gene005920.t1 AT1G05810 43.671 158 88 1 34 191 60 216 2.22e-43 146
MS.gene005920.t1 AT5G59840 45.283 159 85 2 33 190 16 173 3.18e-43 144
MS.gene005920.t1 AT2G31680 41.040 173 98 2 19 191 2 170 4.20e-43 144
MS.gene005920.t1 AT1G02130 44.156 154 85 1 34 187 10 162 2.98e-42 141
MS.gene005920.t1 AT1G18200 45.570 158 85 1 34 191 15 171 3.12e-42 142
MS.gene005920.t1 AT4G17530 43.506 154 86 1 34 187 10 162 5.31e-42 140
MS.gene005920.t1 AT5G64990 43.293 164 85 2 34 190 9 171 1.19e-41 140
MS.gene005920.t1 AT5G47200 43.506 154 86 1 34 187 10 162 1.20e-41 140
MS.gene005920.t1 AT1G01200 44.578 166 90 2 34 198 30 194 1.32e-40 138
MS.gene005920.t1 AT3G09900 44.025 159 87 2 33 190 16 173 1.64e-39 135
MS.gene005920.t1 AT3G11730 40.606 165 97 1 34 198 10 173 2.77e-39 134
MS.gene005920.t1 AT1G73640 44.156 154 85 1 34 187 15 167 3.31e-39 134
MS.gene005920.t1 AT5G03520 44.025 159 87 2 33 190 16 173 6.23e-39 133
MS.gene005920.t1 AT1G43890 39.053 169 99 4 25 191 6 172 2.24e-35 124
MS.gene005920.t1 AT1G43890 39.053 169 99 4 25 191 6 172 2.24e-35 124
MS.gene005920.t1 AT1G43890 39.053 169 99 4 25 191 6 172 2.24e-35 124
MS.gene005920.t1 AT5G59150 48.649 111 57 0 81 191 9 119 2.16e-33 117
MS.gene005920.t1 AT4G35860 43.636 110 62 0 78 187 5 114 1.02e-32 115
MS.gene005920.t1 AT5G03530 36.310 168 103 4 25 190 6 171 6.71e-32 115
MS.gene005920.t1 AT5G03530 36.310 168 103 4 25 190 6 171 6.71e-32 115
MS.gene005920.t1 AT3G18820 36.364 165 97 4 33 190 9 172 5.28e-30 110
MS.gene005920.t1 AT1G22740 36.686 169 99 4 33 194 9 176 1.13e-29 109
MS.gene005920.t1 AT2G21880 35.088 171 103 4 33 196 10 179 1.64e-29 109
MS.gene005920.t1 AT3G09910 36.905 168 102 4 25 190 6 171 1.85e-28 106
MS.gene005920.t1 AT3G09910 36.905 168 102 4 25 190 6 171 1.85e-28 106
MS.gene005920.t1 AT3G09910 36.905 168 102 4 25 190 6 171 1.85e-28 106
MS.gene005920.t1 AT1G52280 34.270 178 109 4 29 199 5 181 1.88e-28 106
MS.gene005920.t1 AT3G09910 36.905 168 102 4 25 190 6 171 2.34e-28 105
MS.gene005920.t1 AT3G09910 36.905 168 102 4 25 190 6 171 2.34e-28 105
MS.gene005920.t1 AT1G49300 35.185 162 97 4 33 187 9 169 8.65e-28 104
MS.gene005920.t1 AT1G49300 35.185 162 97 4 33 187 9 169 8.65e-28 104
MS.gene005920.t1 AT4G09720 34.911 169 102 4 33 194 9 176 1.62e-27 103
MS.gene005920.t1 AT3G16100 33.708 178 110 4 29 199 5 181 2.31e-27 103
MS.gene005920.t1 AT5G03520 42.276 123 69 2 69 190 42 163 8.11e-27 102
MS.gene005920.t1 AT4G09720 33.714 175 101 5 33 194 9 181 9.89e-25 96.7
MS.gene005920.t1 AT5G39620 31.395 172 110 4 32 196 5 175 3.14e-24 95.1
MS.gene005920.t1 AT4G09720 32.778 180 102 5 33 194 9 187 4.57e-24 95.1
MS.gene005920.t1 AT3G48040 35.503 169 92 7 33 188 9 173 4.63e-24 94.7
MS.gene005920.t1 AT5G62880 34.302 172 96 7 33 191 9 176 6.54e-24 94.7
MS.gene005920.t1 AT2G44690 34.884 172 95 7 33 191 19 186 1.98e-23 93.2
MS.gene005920.t1 AT3G51300 34.320 169 94 7 33 188 7 171 2.65e-23 92.8
MS.gene005920.t1 AT1G75840 34.320 169 94 7 33 188 7 171 3.52e-23 92.4
MS.gene005920.t1 AT1G20090 34.320 169 94 7 33 188 6 170 3.91e-23 92.0
MS.gene005920.t1 AT4G35020 34.911 169 93 7 33 188 7 171 5.75e-23 91.7
MS.gene005920.t1 AT4G35020 34.911 169 93 7 33 188 7 171 5.75e-23 91.7
MS.gene005920.t1 AT4G35020 34.911 169 93 7 33 188 7 171 5.75e-23 91.7
MS.gene005920.t1 AT5G45970 33.714 175 99 7 33 194 7 177 1.70e-22 90.5
MS.gene005920.t1 AT2G17800 33.728 169 95 7 33 188 7 171 3.90e-22 89.7
MS.gene005920.t1 AT2G17800 33.728 169 95 7 33 188 7 171 3.90e-22 89.7
MS.gene005920.t1 AT2G21880 33.333 153 94 4 51 196 3 154 6.12e-22 89.0
MS.gene005920.t1 AT2G21880 33.333 153 94 4 51 196 3 154 6.12e-22 89.0
MS.gene005920.t1 AT3G48040 36.250 160 85 7 33 179 9 164 7.94e-22 88.2
MS.gene005920.t1 AT5G62880 35.625 160 86 7 33 179 9 164 1.21e-21 88.2
MS.gene005920.t1 AT4G35950 33.136 169 96 7 33 188 7 171 1.49e-21 88.2
MS.gene005920.t1 AT4G28950 31.361 169 103 6 33 191 7 172 2.56e-21 87.8
MS.gene005920.t1 AT5G55080 29.870 154 104 4 34 187 15 164 2.89e-20 85.1
MS.gene005920.t1 AT2G21880 29.240 171 105 4 33 196 10 171 7.41e-20 84.0
MS.gene005920.t1 AT5G46025 43.333 90 50 1 103 191 14 103 5.05e-19 79.3
MS.gene005920.t1 AT4G09720 34.286 140 84 4 62 194 4 142 9.04e-19 80.1
MS.gene005920.t1 AT4G09720 34.286 140 84 4 62 194 4 142 9.04e-19 80.1
MS.gene005920.t1 AT4G09720 34.286 140 84 4 62 194 4 142 9.04e-19 80.1
MS.gene005920.t1 AT4G35020 40.171 117 64 5 33 147 7 119 1.60e-18 79.0
MS.gene005920.t1 AT4G35020 40.171 117 64 5 33 147 7 119 1.60e-18 79.0
MS.gene005920.t1 AT5G20020 30.519 154 103 4 34 187 15 164 2.26e-18 80.1
MS.gene005920.t1 AT5G20010 30.519 154 103 4 34 187 15 164 2.81e-18 80.1
MS.gene005920.t1 AT5G55190 30.519 154 103 4 34 187 15 164 3.22e-18 79.7
MS.gene005920.t1 AT3G51290 34.146 123 68 4 78 188 651 772 7.26e-15 72.8

Find 47 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCTTTGCTGAAAGATTC+TGG 0.171304 1.3:-65536508 None:intergenic
CTTGTCCTCTTAGGTGATTC+TGG 0.190714 1.3:+65535962 MS.gene005920:CDS
ACCAATGCCATCACTATATC+AGG 0.244974 1.3:-65537623 None:intergenic
CAACAGTCAAGTTTGAAATA+TGG 0.289384 1.3:+65536248 MS.gene005920:CDS
TCAGGCTGCAAGAACATCAT+AGG 0.358339 1.3:-65538382 None:intergenic
TGAACACAGCTTGTCCTCTT+AGG 0.360886 1.3:+65535953 MS.gene005920:intron
TATATTATCCGCTGTCTTTG+CGG 0.366407 1.3:-65537831 None:intergenic
GTGCTTTGCTGAAAGATTCT+GGG 0.381291 1.3:-65536507 None:intergenic
GGTTGCGGCTCCTCCTTTCC+AGG 0.386599 1.3:+65534697 MS.gene005920:CDS
AACAGTCAAGTTTGAAATAT+GGG 0.387955 1.3:+65536249 MS.gene005920:CDS
GGTCGACCAAGTCCCGAAAA+TGG 0.394087 1.3:+65534944 MS.gene005920:CDS
CTTTCAGCAAAGCACAGTAC+TGG 0.403439 1.3:+65536515 MS.gene005920:CDS
CTGTTTCAGGTATGCTGCAT+TGG 0.410169 1.3:+65536429 MS.gene005920:intron
CATATTCTTACCTTGGATGT+TGG 0.419450 1.3:-65536034 None:intergenic
CTCTTAGGTGATTCTGGTGT+TGG 0.430297 1.3:+65535968 MS.gene005920:CDS
CAAAGCACAGTACTGGGTTA+AGG 0.458693 1.3:+65536522 MS.gene005920:CDS
TAATATAAACGAACTGTTTG+AGG 0.496118 1.3:+65537847 MS.gene005920:CDS
ATTGTTCTGCGATTTGTTCG+TGG 0.511021 1.3:+65536001 MS.gene005920:CDS
AGCCGATCTTCACGAGAAGC+GGG 0.511764 1.3:+65537655 MS.gene005920:CDS
AAGCCGATCTTCACGAGAAG+CGG 0.512350 1.3:+65537654 MS.gene005920:CDS
GAAGCGGGAGGTTGCTGTTG+AGG 0.528095 1.3:+65537670 MS.gene005920:CDS
CACCTAACGACCATGGGTTG+CGG 0.528973 1.3:+65534682 None:intergenic
TTTCAGCAAAGCACAGTACT+GGG 0.546830 1.3:+65536516 MS.gene005920:CDS
CTCCCGCTTCTCGTGAAGAT+CGG 0.553158 1.3:-65537657 None:intergenic
TTGTAATGTAAGGTAACTGT+TGG 0.553827 1.3:+65536184 MS.gene005920:intron
CAACACCAGAATCACCTAAG+AGG 0.554983 1.3:-65535967 None:intergenic
TGTTTCCGTGAAGGATGGCA+TGG 0.556519 1.3:+65537769 MS.gene005920:intron
AAAGGAGGAGCCGCAACCCA+TGG 0.575169 1.3:-65534692 None:intergenic
TTCTGGGCTTGTTATATCGT+AGG 0.577675 1.3:-65536491 None:intergenic
GATAGGGATTCAAGGCAGCT+AGG 0.578929 1.3:+65534923 MS.gene005920:intron
CAGGCTGCAAGAACATCATA+GGG 0.582843 1.3:-65538381 None:intergenic
GATATAGTGATGGCATTGGT+TGG 0.609417 1.3:+65537626 MS.gene005920:CDS
CCAAGTCCCGAAAATGGTGG+AGG 0.610156 1.3:+65534950 MS.gene005920:CDS
CCCTGATATAGTGATGGCAT+TGG 0.610235 1.3:+65537622 MS.gene005920:CDS
CGACCAAGTCCCGAAAATGG+TGG 0.618903 1.3:+65534947 MS.gene005920:CDS
TGGAAGCCCTGATATAGTGA+TGG 0.626540 1.3:+65537616 MS.gene005920:CDS
ATGGACTATGCAGAGAAGAA+CGG 0.630459 1.3:+65537788 MS.gene005920:CDS
CCAATGCCATCACTATATCA+GGG 0.632375 1.3:-65537622 None:intergenic
TTTGAAATATGGGATACCGC+TGG 0.632905 1.3:+65536259 MS.gene005920:CDS
TCAGTTTGATCCAACATCCA+AGG 0.640164 1.3:+65536024 MS.gene005920:CDS
GGGATACCGCTGGTCAAGAG+AGG 0.645477 1.3:+65536269 MS.gene005920:CDS
ACTGTATTATCGTGGTGCAG+CGG 0.654941 1.3:+65536456 MS.gene005920:CDS
AGAGACATCCGCAAAGACAG+CGG 0.663905 1.3:+65537823 MS.gene005920:CDS
CGATCTTCACGAGAAGCGGG+AGG 0.679341 1.3:+65537658 MS.gene005920:CDS
AAGTTACCTCTCTTGACCAG+CGG 0.701831 1.3:-65536275 None:intergenic
TTGGCACCACTGTATTATCG+TGG 0.723087 1.3:+65536448 MS.gene005920:CDS
GCTGCACCACGATAATACAG+TGG 0.758366 1.3:-65536454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTAAAATTATTTGAAT+AGG - chr1.3:65535219-65535238 None:intergenic 10.0%
!! CATATATTCTATAAAATATA+TGG - chr1.3:65535751-65535770 None:intergenic 10.0%
!! TCATTAAAATTATTTGAATA+GGG - chr1.3:65535218-65535237 None:intergenic 10.0%
!! TGAAATATATGTAAATATTT+AGG + chr1.3:65537580-65537599 MS.gene005920:intron 10.0%
!!! AAGAATTTTTTCTTATATAT+AGG - chr1.3:65537050-65537069 None:intergenic 10.0%
!!! TAAGAAAAAATTCTTTTTTT+AGG + chr1.3:65537055-65537074 MS.gene005920:intron 10.0%
!! AGAAGAAATTATTGAATTTA+GGG + chr1.3:65534861-65534880 MS.gene005920:intron 15.0%
!! AGATTAAACTAAAATATTTG+AGG - chr1.3:65535899-65535918 None:intergenic 15.0%
!! TACAATGATTATAAATGAAA+TGG - chr1.3:65536657-65536676 None:intergenic 15.0%
!! TAGAAGAAATTATTGAATTT+AGG + chr1.3:65534860-65534879 MS.gene005920:intron 15.0%
!! TTATCAATAGAATAGAAAAT+AGG + chr1.3:65537421-65537440 MS.gene005920:intron 15.0%
!!! AAGAATCTTTTCTTATATAT+AGG + chr1.3:65537149-65537168 MS.gene005920:intron 15.0%
!!! ATTTTGATTTTTATTGAAGT+TGG + chr1.3:65538096-65538115 MS.gene005920:intron 15.0%
!!! CTATATTTTAATTTCTTGTT+TGG + chr1.3:65536569-65536588 MS.gene005920:intron 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG - chr1.3:65537144-65537163 None:intergenic 15.0%
!!! TGATTTTTTTTTTCATTGTA+TGG + chr1.3:65534790-65534809 MS.gene005920:intron 15.0%
!!! TTTAAAATTGAATAACTGAA+AGG - chr1.3:65537891-65537910 None:intergenic 15.0%
!!! TTTTACAAAAGACTAATTAT+GGG - chr1.3:65535698-65535717 None:intergenic 15.0%
!!! TTTTGATTTTTATTGAAGTT+GGG + chr1.3:65538097-65538116 MS.gene005920:intron 15.0%
!! ATAATAGCCATTAAAAATGA+AGG + chr1.3:65535836-65535855 MS.gene005920:intron 20.0%
!! GTAGATAGTTATACTATTTA+AGG - chr1.3:65537707-65537726 None:intergenic 20.0%
!! GTCTTCAAAATTAAAGAATT+TGG - chr1.3:65535018-65535037 None:intergenic 20.0%
!! TAATAGCCATTAAAAATGAA+GGG + chr1.3:65535837-65535856 MS.gene005920:intron 20.0%
!! TACATCTTGAAATAAGAAAA+GGG - chr1.3:65536378-65536397 None:intergenic 20.0%
!! TATTATTGGGAATTAATTTC+TGG - chr1.3:65535822-65535841 None:intergenic 20.0%
!!! AATTAGTCTTTTGTAAAACT+TGG + chr1.3:65535700-65535719 MS.gene005920:intron 20.0%
!!! ATATGATTTTGATTTGAAGT+CGG + chr1.3:65535766-65535785 MS.gene005920:intron 20.0%
!!! CATTTTTAATGGCTATTATT+GGG - chr1.3:65535835-65535854 None:intergenic 20.0%
!!! GATTATTTTCTTTTTTTCAC+AGG - chr1.3:65538072-65538091 None:intergenic 20.0%
!!! GTAAATTTTCCTAATATTGA+AGG + chr1.3:65536082-65536101 MS.gene005920:intron 20.0%
!!! GTTTTACAAAAGACTAATTA+TGG - chr1.3:65535699-65535718 None:intergenic 20.0%
!!! TATCAATTTTCTTTCTCAAT+GGG + chr1.3:65535262-65535281 MS.gene005920:intron 20.0%
!!! TCATTTTTAATGGCTATTAT+TGG - chr1.3:65535836-65535855 None:intergenic 20.0%
!!! TTTCTATTTGCTGTTAATTT+AGG + chr1.3:65535127-65535146 MS.gene005920:intron 20.0%
!!! TTTTTAGACTTTGTAATGTA+AGG + chr1.3:65536174-65536193 MS.gene005920:intron 20.0%
!!! TTTTTTCTTATATATAGGAC+CGG - chr1.3:65537045-65537064 None:intergenic 20.0%
! AAAATTATACCAGACCTTAT+AGG - chr1.3:65535497-65535516 None:intergenic 25.0%
! AAATTATAAGAACTCCAACA+TGG - chr1.3:65536157-65536176 None:intergenic 25.0%
! AAGTGAATGCATAATTACAT+TGG - chr1.3:65535798-65535817 None:intergenic 25.0%
! ACATCTTGAAATAAGAAAAG+GGG - chr1.3:65536377-65536396 None:intergenic 25.0%
! ATATGGTAATTATTCCATGT+TGG + chr1.3:65536140-65536159 MS.gene005920:intron 25.0%
! ATGTTATACTTTCTATGCTA+TGG + chr1.3:65535562-65535581 MS.gene005920:intron 25.0%
! CTTCACTGTGATTAATAAAA+CGG - chr1.3:65537217-65537236 None:intergenic 25.0%
! GAAAAGTTGAAAAATTTACC+TGG - chr1.3:65534718-65534737 None:intergenic 25.0%
! GAACAAAACCATGTTTAAAA+CGG - chr1.3:65535086-65535105 None:intergenic 25.0%
! GATTTAATGCTTACTAGATA+TGG + chr1.3:65536123-65536142 MS.gene005920:intron 25.0%
! GTACATCTTGAAATAAGAAA+AGG - chr1.3:65536379-65536398 None:intergenic 25.0%
! TAACCAATTCCTTCAATATT+AGG - chr1.3:65536094-65536113 None:intergenic 25.0%
! TAATATAAACGAACTGTTTG+AGG + chr1.3:65537847-65537866 MS.gene005920:CDS 25.0%
! TACATATTATACCCATTAAG+AGG - chr1.3:65536742-65536761 None:intergenic 25.0%
! TATAATATGTAGAGAAAAGG+TGG + chr1.3:65536751-65536770 MS.gene005920:intron 25.0%
! TATCTTGTAATGAGAATGAT+TGG - chr1.3:65537387-65537406 None:intergenic 25.0%
! TTCACTGTGATTAATAAAAC+GGG - chr1.3:65537216-65537235 None:intergenic 25.0%
! TTGAGAAAGAAAATTGATAC+AGG - chr1.3:65535261-65535280 None:intergenic 25.0%
! TTTCCTAATATTGAAGGAAT+TGG + chr1.3:65536088-65536107 MS.gene005920:intron 25.0%
!! AACAAAAAGCATACTATATC+AGG - chr1.3:65537753-65537772 None:intergenic 25.0%
!! AACAAAACCATGTTTAAAAC+GGG - chr1.3:65535085-65535104 None:intergenic 25.0%
!! AACAGTCAAGTTTGAAATAT+GGG + chr1.3:65536249-65536268 MS.gene005920:CDS 25.0%
!! ATTTTTATTGAAGTTGGGAA+TGG + chr1.3:65538102-65538121 MS.gene005920:intron 25.0%
!! CTAAAATATTTGAGGTATGA+AGG - chr1.3:65535891-65535910 None:intergenic 25.0%
!! GTATCAATTTTCTTTCTCAA+TGG + chr1.3:65535261-65535280 MS.gene005920:intron 25.0%
!! GTTTAAAGCACAGTTTATTT+CGG + chr1.3:65535407-65535426 MS.gene005920:intron 25.0%
!! TCTTTTCTTATATATAGGAC+CGG + chr1.3:65537154-65537173 MS.gene005920:intron 25.0%
!! TGATTTTGTGTTTTCAGATA+GGG + chr1.3:65534907-65534926 MS.gene005920:intron 25.0%
!! TTATTGAATTTAGGGTTTGA+CGG + chr1.3:65534869-65534888 MS.gene005920:intron 25.0%
!! TTGATTTTGTGTTTTCAGAT+AGG + chr1.3:65534906-65534925 MS.gene005920:intron 25.0%
!! TTTTGACATTTAGCTGAAAA+GGG + chr1.3:65534752-65534771 MS.gene005920:intron 25.0%
!!! AACAAAATTTGTTTTTCACG+AGG - chr1.3:65536935-65536954 None:intergenic 25.0%
!!! ACATTGAGTTTTATCAAACA+TGG - chr1.3:65536885-65536904 None:intergenic 25.0%
!!! ATTATTGACTTACAGATCTT+CGG + chr1.3:65538264-65538283 MS.gene005920:intron 25.0%
!!! ATTGAGTTTTATCAAACATG+GGG - chr1.3:65536883-65536902 None:intergenic 25.0%
!!! CATTGAGTTTTATCAAACAT+GGG - chr1.3:65536884-65536903 None:intergenic 25.0%
!!! CTAAATCCCTTCATTTTTAA+TGG - chr1.3:65535846-65535865 None:intergenic 25.0%
!!! CTGTTTTTAACTTTTGTCTT+TGG + chr1.3:65538320-65538339 MS.gene005920:intron 25.0%
!!! TAGTAGTTATGTTAGTTTTC+AGG - chr1.3:65538034-65538053 None:intergenic 25.0%
!!! TGAGTAACTTTTTTACAAGA+TGG + chr1.3:65535337-65535356 MS.gene005920:intron 25.0%
!!! TTCATTTTTTTTGTTGCAGA+TGG + chr1.3:65535170-65535189 MS.gene005920:intron 25.0%
!!! TTTTAGTTAACTGTCCTATA+AGG + chr1.3:65535480-65535499 MS.gene005920:intron 25.0%
AACAAAATAAGCGTCTGTAA+TGG - chr1.3:65536341-65536360 None:intergenic 30.0%
AATAATTCGCTTCATTCCAA+AGG - chr1.3:65535446-65535465 None:intergenic 30.0%
ACAATAGAAAATCCTTAGCT+CGG + chr1.3:65537953-65537972 MS.gene005920:intron 30.0%
ACAGGAAAACCAAGAATAAA+TGG + chr1.3:65536845-65536864 MS.gene005920:intron 30.0%
ATTATACCCATTAAGAGGTA+AGG - chr1.3:65536737-65536756 None:intergenic 30.0%
ATTTAGGAGCTACAAAAACA+TGG + chr1.3:65537596-65537615 MS.gene005920:intron 30.0%
CATCTTGAAATAAGAAAAGG+GGG - chr1.3:65536376-65536395 None:intergenic 30.0%
CTACAGAGATTGAAATAAAC+CGG + chr1.3:65537295-65537314 MS.gene005920:intron 30.0%
GAATAGCTCAAAATTTGTAC+AGG + chr1.3:65536827-65536846 MS.gene005920:intron 30.0%
GGGTATAATATGTAGAGAAA+AGG + chr1.3:65536748-65536767 MS.gene005920:intron 30.0%
GGTTTATTTCAATCTCTGTA+GGG - chr1.3:65537296-65537315 None:intergenic 30.0%
GTTGAAAAATTTACCTGGAA+AGG - chr1.3:65534713-65534732 None:intergenic 30.0%
GTTTATTTCAATCTCTGTAG+GGG - chr1.3:65537295-65537314 None:intergenic 30.0%
TACAAGATGGTAAAAGACAA+AGG + chr1.3:65535350-65535369 MS.gene005920:intron 30.0%
TATGATCAACTCTTCTTACT+GGG - chr1.3:65536807-65536826 None:intergenic 30.0%
TATGTTGTATTCACTGATGT+TGG - chr1.3:65536622-65536641 None:intergenic 30.0%
TGAAAGGATGTAAACATCAA+AGG - chr1.3:65537875-65537894 None:intergenic 30.0%
TTATACCCATTAAGAGGTAA+GGG - chr1.3:65536736-65536755 None:intergenic 30.0%
TTGTAATGTAAGGTAACTGT+TGG + chr1.3:65536184-65536203 MS.gene005920:intron 30.0%
TTTGACATTTAGCTGAAAAG+GGG + chr1.3:65534753-65534772 MS.gene005920:intron 30.0%
! CAACAGTCAAGTTTGAAATA+TGG + chr1.3:65536248-65536267 MS.gene005920:CDS 30.0%
! CTTTTGACATTTAGCTGAAA+AGG + chr1.3:65534751-65534770 MS.gene005920:intron 30.0%
! TAATTAGTTCAGCTTTTGCT+TGG + chr1.3:65535311-65535330 MS.gene005920:intron 30.0%
! TATAAGGTGCCAAAATGATA+TGG + chr1.3:65538186-65538205 MS.gene005920:intron 30.0%
! TATTGAATTTAGGGTTTGAC+GGG + chr1.3:65534870-65534889 MS.gene005920:intron 30.0%
! TGTGATTAATAAAACGGGTT+TGG - chr1.3:65537211-65537230 None:intergenic 30.0%
!! AAAATTTGTTTTTCACGAGG+TGG - chr1.3:65536932-65536951 None:intergenic 30.0%
!! AGTTTTCAGGATTTAAACTC+TGG - chr1.3:65538021-65538040 None:intergenic 30.0%
!! CTATTTGCTGTTAATTTAGG+AGG + chr1.3:65535130-65535149 MS.gene005920:intron 30.0%
!! TGAACCATGTTTTGAGTATA+AGG + chr1.3:65538170-65538189 MS.gene005920:intron 30.0%
!! TGTTATACCCGTTTTAAACA+TGG + chr1.3:65535075-65535094 MS.gene005920:intron 30.0%
!! TTATTGACTTACAGATCTTC+GGG + chr1.3:65538265-65538284 MS.gene005920:intron 30.0%
!!! ATTTTGGGTTTGTGGTTTAA+TGG + chr1.3:65534825-65534844 MS.gene005920:intron 30.0%
!!! TTTTGGGTTTGTGGTTTAAT+GGG + chr1.3:65534826-65534845 MS.gene005920:intron 30.0%
AAAGCCACATATTCTTACCT+TGG - chr1.3:65536044-65536063 None:intergenic 35.0%
ACATCCAAGGTAAGAATATG+TGG + chr1.3:65536037-65536056 MS.gene005920:intron 35.0%
ATAAAACCTGCATCTTAGGT+GGG + chr1.3:65536990-65537009 MS.gene005920:intron 35.0%
ATGATCAACTCTTCTTACTG+GGG - chr1.3:65536806-65536825 None:intergenic 35.0%
ATTCTAATAACTACTCCCTC+CGG - chr1.3:65537176-65537195 None:intergenic 35.0%
CATACCTGAAACAGATGATT+GGG - chr1.3:65536423-65536442 None:intergenic 35.0%
CATATTCTTACCTTGGATGT+TGG - chr1.3:65536037-65536056 None:intergenic 35.0%
CGCTAAAAATCTTCGTGTTA+AGG + chr1.3:65534979-65534998 MS.gene005920:CDS 35.0%
CGGTTTATTCTTTGTTCCTT+TGG + chr1.3:65535427-65535446 MS.gene005920:intron 35.0%
CGGTTTATTTCAATCTCTGT+AGG - chr1.3:65537297-65537316 None:intergenic 35.0%
CTATGATCAACTCTTCTTAC+TGG - chr1.3:65536808-65536827 None:intergenic 35.0%
CTGTGTTCAGTGACATTTAA+AGG - chr1.3:65535942-65535961 None:intergenic 35.0%
GAAAAATTTACCTGGAAAGG+AGG - chr1.3:65534710-65534729 None:intergenic 35.0%
GCACGTGAGATTTCATTTAT+TGG + chr1.3:65537338-65537357 MS.gene005920:intron 35.0%
GTTCATAAAACCTGCATCTT+AGG + chr1.3:65536986-65537005 MS.gene005920:intron 35.0%
TATATTATCCGCTGTCTTTG+CGG - chr1.3:65537834-65537853 None:intergenic 35.0%
TATTGAAGTTGGGAATGGAA+TGG + chr1.3:65538107-65538126 MS.gene005920:intron 35.0%
TCTCGAAAATATGCACAACA+TGG + chr1.3:65535723-65535742 MS.gene005920:intron 35.0%
TTCTTATATATAGGACCGGA+GGG + chr1.3:65537158-65537177 MS.gene005920:intron 35.0%
TTCTTATATATAGGACCGGA+GGG - chr1.3:65537177-65537158 None:intergenic 35.0%
TTGACAAATGACTGTAAGAG+TGG - chr1.3:65535606-65535625 None:intergenic 35.0%
TTTCTTATATATAGGACCGG+AGG + chr1.3:65537157-65537176 MS.gene005920:intron 35.0%
TTTCTTATATATAGGACCGG+AGG - chr1.3:65537176-65537157 None:intergenic 35.0%
! AAAACCGGACCATATCATTT+TGG - chr1.3:65538198-65538217 None:intergenic 35.0%
! ACTGTGCTTTAAACTTTCAG+TGG - chr1.3:65535401-65535420 None:intergenic 35.0%
! ACTTTTGTCTTTGGTCTCTT+AGG + chr1.3:65538329-65538348 MS.gene005920:intron 35.0%
! ATTGAATTTAGGGTTTGACG+GGG + chr1.3:65534871-65534890 MS.gene005920:intron 35.0%
! TGTTTTCAGATAGGGATTCA+AGG + chr1.3:65534915-65534934 MS.gene005920:intron 35.0%
! TTGTTGCAGATGGTTCATTT+TGG + chr1.3:65535180-65535199 MS.gene005920:intron 35.0%
! TTTGGGTTTGTGGTTTAATG+GGG + chr1.3:65534827-65534846 MS.gene005920:intron 35.0%
! TTTTTGATGTACTCCTTCTG+AGG - chr1.3:65535643-65535662 None:intergenic 35.0%
!! AGGAGGTAGTTTGTTGTAAT+AGG + chr1.3:65535147-65535166 MS.gene005920:intron 35.0%
!! ATGGCTTCGATTTGTGATTT+TGG + chr1.3:65534809-65534828 MS.gene005920:intron 35.0%
!! TATGCTTTTTGTTTCCGTGA+AGG + chr1.3:65537760-65537779 MS.gene005920:intron 35.0%
!! TGGCTTCGATTTGTGATTTT+GGG + chr1.3:65534810-65534829 MS.gene005920:intron 35.0%
!!! GATTTGTGATTTTGGGTTTG+TGG + chr1.3:65534817-65534836 MS.gene005920:intron 35.0%
AATGAAATCTCACGTGCGTA+AGG - chr1.3:65537335-65537354 None:intergenic 40.0%
ACAACACCCTTACCTCTTAA+TGG + chr1.3:65536727-65536746 MS.gene005920:intron 40.0%
ACATTTAGCTGAAAAGGGGT+TGG + chr1.3:65534757-65534776 MS.gene005920:intron 40.0%
ACCAATGCCATCACTATATC+AGG - chr1.3:65537626-65537645 None:intergenic 40.0%
AGAATGAATGATGCGCAATC+TGG - chr1.3:65536313-65536332 None:intergenic 40.0%
CAACACCCTTACCTCTTAAT+GGG + chr1.3:65536728-65536747 MS.gene005920:intron 40.0%
CACATGATCAGCATCAAAAC+CGG - chr1.3:65538213-65538232 None:intergenic 40.0%
CACGAGGATACATGTTTATC+TGG - chr1.3:65536699-65536718 None:intergenic 40.0%
CATAAAACCTGCATCTTAGG+TGG + chr1.3:65536989-65537008 MS.gene005920:intron 40.0%
CCAATGCCATCACTATATCA+GGG - chr1.3:65537625-65537644 None:intergenic 40.0%
GATTCCCAATCATCTGTTTC+AGG + chr1.3:65536416-65536435 MS.gene005920:intron 40.0%
GCATACCTGAAACAGATGAT+TGG - chr1.3:65536424-65536443 None:intergenic 40.0%
GGCACCTTATACTCAAAACA+TGG - chr1.3:65538177-65538196 None:intergenic 40.0%
GTGCTTTGCTGAAAGATTCT+GGG - chr1.3:65536510-65536529 None:intergenic 40.0%
GTTAACTGTCCTATAAGGTC+TGG + chr1.3:65535485-65535504 MS.gene005920:intron 40.0%
GTTTGTGGTTTAATGGGGTT+TGG + chr1.3:65534832-65534851 MS.gene005920:intron 40.0%
TAAGGAGTAACGAAGGAAAC+CGG - chr1.3:65537317-65537336 None:intergenic 40.0%
TACTTAGTTACTACTCCCTC+CGG + chr1.3:65537023-65537042 MS.gene005920:intron 40.0%
TAGAAAATCCTTAGCTCGGT+TGG + chr1.3:65537957-65537976 MS.gene005920:intron 40.0%
TCAGTTTGATCCAACATCCA+AGG + chr1.3:65536024-65536043 MS.gene005920:CDS 40.0%
TCATCATTGAGATGCTGACA+TGG - chr1.3:65535666-65535685 None:intergenic 40.0%
TCTTGCTTGAAACACCTTCA+GGG - chr1.3:65537995-65538014 None:intergenic 40.0%
TGCACAGAACAGGCAAATAT+TGG - chr1.3:65537245-65537264 None:intergenic 40.0%
TGTGCTTTGCTGAAAGATTC+TGG - chr1.3:65536511-65536530 None:intergenic 40.0%
TTCTTGCTTGAAACACCTTC+AGG - chr1.3:65537996-65538015 None:intergenic 40.0%
TTTATCAAACATGGGGTCCT+CGG - chr1.3:65536876-65536895 None:intergenic 40.0%
TTTCAGCAAAGCACAGTACT+GGG + chr1.3:65536516-65536535 MS.gene005920:CDS 40.0%
! AACGTAAAAGTGCACAGAAC+AGG - chr1.3:65537255-65537274 None:intergenic 40.0%
! AGATCTTCGGGACTTTTCAA+AGG + chr1.3:65538277-65538296 MS.gene005920:intron 40.0%
! ATGGACTATGCAGAGAAGAA+CGG + chr1.3:65537788-65537807 MS.gene005920:CDS 40.0%
! ATTGTTCTGCGATTTGTTCG+TGG + chr1.3:65536001-65536020 MS.gene005920:CDS 40.0%
! GTGGTATGAAGCTTAGTCTT+AGG + chr1.3:65538230-65538249 MS.gene005920:intron 40.0%
! TTTGAAATATGGGATACCGC+TGG + chr1.3:65536259-65536278 MS.gene005920:CDS 40.0%
!! CTTTTTGTTTCCGTGAAGGA+TGG + chr1.3:65537764-65537783 MS.gene005920:intron 40.0%
!! GATATAGTGATGGCATTGGT+TGG + chr1.3:65537626-65537645 MS.gene005920:CDS 40.0%
!! TTCTGGGCTTGTTATATCGT+AGG - chr1.3:65536494-65536513 None:intergenic 40.0%
AAGAATAAATGGCCTCTCCG+AGG + chr1.3:65536856-65536875 MS.gene005920:intron 45.0%
AAGTTACCTCTCTTGACCAG+CGG - chr1.3:65536278-65536297 None:intergenic 45.0%
ACTGTATTATCGTGGTGCAG+CGG + chr1.3:65536456-65536475 MS.gene005920:CDS 45.0%
ATAGTCCATGCCATCCTTCA+CGG - chr1.3:65537777-65537796 None:intergenic 45.0%
CAACACCAGAATCACCTAAG+AGG - chr1.3:65535970-65535989 None:intergenic 45.0%
CAGGCTGCAAGAACATCATA+GGG - chr1.3:65538384-65538403 None:intergenic 45.0%
CCCTGATATAGTGATGGCAT+TGG + chr1.3:65537622-65537641 MS.gene005920:CDS 45.0%
CTCTTAGGTGATTCTGGTGT+TGG + chr1.3:65535968-65535987 MS.gene005920:CDS 45.0%
CTTATTCCCACCTAAGATGC+AGG - chr1.3:65536999-65537018 None:intergenic 45.0%
CTTCTTACTGGGGCTGATAT+TGG - chr1.3:65536796-65536815 None:intergenic 45.0%
CTTGTCCTCTTAGGTGATTC+TGG + chr1.3:65535962-65535981 MS.gene005920:CDS 45.0%
CTTTCAGCAAAGCACAGTAC+TGG + chr1.3:65536515-65536534 MS.gene005920:CDS 45.0%
GGTGCCAAAATGATATGGTC+CGG + chr1.3:65538191-65538210 MS.gene005920:intron 45.0%
TCAGGCTGCAAGAACATCAT+AGG - chr1.3:65538385-65538404 None:intergenic 45.0%
TCGGAGAGGCCATTTATTCT+TGG - chr1.3:65536857-65536876 None:intergenic 45.0%
TGAACACAGCTTGTCCTCTT+AGG + chr1.3:65535953-65535972 MS.gene005920:intron 45.0%
TGGAAGCCCTGATATAGTGA+TGG + chr1.3:65537616-65537635 MS.gene005920:CDS 45.0%
TTAGTTCACCAACCGAGCTA+AGG - chr1.3:65537968-65537987 None:intergenic 45.0%
TTGGCACCACTGTATTATCG+TGG + chr1.3:65536448-65536467 MS.gene005920:CDS 45.0%
! ATGTACTCCTTCTGAGGATG+TGG - chr1.3:65535637-65535656 None:intergenic 45.0%
! CAAAGCACAGTACTGGGTTA+AGG + chr1.3:65536522-65536541 MS.gene005920:CDS 45.0%
! CTGTTTCAGGTATGCTGCAT+TGG + chr1.3:65536429-65536448 MS.gene005920:intron 45.0%
! GGTGTTGTCATTAAGTCACG+AGG - chr1.3:65536715-65536734 None:intergenic 45.0%
! GTCTTGTCCTCCACCATTTT+CGG - chr1.3:65534960-65534979 None:intergenic 45.0%
! TCTTGTCCTCCACCATTTTC+GGG - chr1.3:65534959-65534978 None:intergenic 45.0%
! TTAGGGTTTGACGGGGTTTT+TGG + chr1.3:65534878-65534897 MS.gene005920:intron 45.0%
!! CGGTTTTGATGCTGATCATG+TGG + chr1.3:65538211-65538230 MS.gene005920:intron 45.0%
!!! ATTCAATTTTAAATTAATTA+TGG + chr1.3:65537898-65537917 MS.gene005920:intron 5.0%
!!! TTCAATTTTAAATTAATTAT+GGG + chr1.3:65537899-65537918 MS.gene005920:intron 5.0%
AAGCCGATCTTCACGAGAAG+CGG + chr1.3:65537654-65537673 MS.gene005920:CDS 50.0%
ACGTGCGTAAGGAGTAACGA+AGG - chr1.3:65537324-65537343 None:intergenic 50.0%
AGAGACATCCGCAAAGACAG+CGG + chr1.3:65537823-65537842 MS.gene005920:CDS 50.0%
GATAGGGATTCAAGGCAGCT+AGG + chr1.3:65534923-65534942 MS.gene005920:intron 50.0%
GCTGCACCACGATAATACAG+TGG - chr1.3:65536457-65536476 None:intergenic 50.0%
GCTTACGCATGTGTGAGCAA+TGG - chr1.3:65537499-65537518 None:intergenic 50.0%
GGTGAACTAAGTGACCCTGA+AGG + chr1.3:65537978-65537997 MS.gene005920:intron 50.0%
TGTTTCCGTGAAGGATGGCA+TGG + chr1.3:65537769-65537788 MS.gene005920:intron 50.0%
! TCGGGACTTTTCAAAGGCTG+TGG + chr1.3:65538283-65538302 MS.gene005920:intron 50.0%
!! GGGGCTGATATTGGTCTTCT+AGG - chr1.3:65536787-65536806 None:intergenic 50.0%
AGCCGATCTTCACGAGAAGC+GGG + chr1.3:65537655-65537674 MS.gene005920:CDS 55.0%
CCAAGTCCCGAAAATGGTGG+AGG + chr1.3:65534950-65534969 MS.gene005920:CDS 55.0%
CCTGCAACCACATCCTCAGA+AGG + chr1.3:65535627-65535646 MS.gene005920:intron 55.0%
CGACCAAGTCCCGAAAATGG+TGG + chr1.3:65534947-65534966 MS.gene005920:CDS 55.0%
CTCCCGCTTCTCGTGAAGAT+CGG - chr1.3:65537660-65537679 None:intergenic 55.0%
GGTCGACCAAGTCCCGAAAA+TGG + chr1.3:65534944-65534963 MS.gene005920:CDS 55.0%
! CCTTCTGAGGATGTGGTTGC+AGG - chr1.3:65535630-65535649 None:intergenic 55.0%
!! CCTCCACCATTTTCGGGACT+TGG - chr1.3:65534953-65534972 None:intergenic 55.0%
CAAACATGGGGTCCTCGGAG+AGG - chr1.3:65536871-65536890 None:intergenic 60.0%
CGATCTTCACGAGAAGCGGG+AGG + chr1.3:65537658-65537677 MS.gene005920:CDS 60.0%
GGGATACCGCTGGTCAAGAG+AGG + chr1.3:65536269-65536288 MS.gene005920:CDS 60.0%
! GAAGCGGGAGGTTGCTGTTG+AGG + chr1.3:65537670-65537689 MS.gene005920:CDS 60.0%
GGTTGCGGCTCCTCCTTTCC+AGG + chr1.3:65534697-65534716 MS.gene005920:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 65534694 65538404 65534694 ID=MS.gene005920
chr1.3 mRNA 65534694 65538404 65534694 ID=MS.gene005920.t1;Parent=MS.gene005920
chr1.3 exon 65534694 65534718 65534694 ID=MS.gene005920.t1.exon1;Parent=MS.gene005920.t1
chr1.3 CDS 65534694 65534718 65534694 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65534924 65535000 65534924 ID=MS.gene005920.t1.exon2;Parent=MS.gene005920.t1
chr1.3 CDS 65534924 65535000 65534924 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65535962 65536045 65535962 ID=MS.gene005920.t1.exon3;Parent=MS.gene005920.t1
chr1.3 CDS 65535962 65536045 65535962 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65536196 65536290 65536196 ID=MS.gene005920.t1.exon4;Parent=MS.gene005920.t1
chr1.3 CDS 65536196 65536290 65536196 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65536438 65536543 65536438 ID=MS.gene005920.t1.exon5;Parent=MS.gene005920.t1
chr1.3 CDS 65536438 65536543 65536438 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65537602 65537691 65537602 ID=MS.gene005920.t1.exon6;Parent=MS.gene005920.t1
chr1.3 CDS 65537602 65537691 65537602 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65537782 65537868 65537782 ID=MS.gene005920.t1.exon7;Parent=MS.gene005920.t1
chr1.3 CDS 65537782 65537868 65537782 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
chr1.3 exon 65538351 65538404 65538351 ID=MS.gene005920.t1.exon8;Parent=MS.gene005920.t1
chr1.3 CDS 65538351 65538404 65538351 ID=cds.MS.gene005920.t1;Parent=MS.gene005920.t1
Gene Sequence

>MS.gene005920

ATGGGTTGCGGCTCCTCCTTTCCAGGTAAATTTTTCAACTTTTCTTCAAATTCTCATCTTTTGACATTTAGCTGAAAAGGGGTTGGAAAAAAAAATTGATTTTTTTTTTCATTGTATGGCTTCGATTTGTGATTTTGGGTTTGTGGTTTAATGGGGTTTGGTTAATTAGAAGAAATTATTGAATTTAGGGTTTGACGGGGTTTTTGGTTAATTTGATTTTGTGTTTTCAGATAGGGATTCAAGGCAGCTAGGTCGACCAAGTCCCGAAAATGGTGGAGGACAAGACGCTAAAAATCTTCGTGTTAAGGTATTAATTTTATGCCAAATTCTTTAATTTTGAAGACATATTTTTTGTTTTGTTTTTGTTGTTGTTGTTGTTGTTGTTATACCCGTTTTAAACATGGTTTTGTTCTGTTTCATGTTTCTTGTAGATTTTCTATTTGCTGTTAATTTAGGAGGTAGTTTGTTGTAATAGGTTCATTTTTTTTGTTGCAGATGGTTCATTTTGGATTTTTGTTTCACCCTATTCAAATAATTTTAATGATTGTGATTCGATGCTCAAATCCTGTATCAATTTTCTTTCTCAATGGGAGACTTTGTATTTATGCAGTAAATAGTAATTAGTTCAGCTTTTGCTTGGATTTGAGTAACTTTTTTACAAGATGGTAAAAGACAAAGGAAGTAATACAATTTTATTAAAATAACCACTGAAAGTTTAAAGCACAGTTTATTTCGGTTTATTCTTTGTTCCTTTGGAATGAAGCGAATTATTTTGTACACTTTTTCTTTTAGTTAACTGTCCTATAAGGTCTGGTATAATTTTTTGTTATGAGTTAGTAAAAGAATCACATCGAAGTTTCTGTGTCACATGTTATACTTTCTATGCTATGGCAAAGAAATAACTATCAACCACTCTTACAGTCATTTGTCAAACCTGCAACCACATCCTCAGAAGGAGTACATCAAAAACCATGTCAGCATCTCAATGATGACAATTTTCACCCATAATTAGTCTTTTGTAAAACTTGGTCTCGAAAATATGCACAACATGGAGCCATATATTTTATAGAATATATGATTTTGATTTGAAGTCGGATGTTGCCAATGTAATTATGCATTCACTTGCCAGAAATTAATTCCCAATAATAGCCATTAAAAATGAAGGGATTTAGTTGAAATTATTAATAAAAAATTCCTTCATACCTCAAATATTTTAGTTTAATCTTTGAATGACTCAATAACTAACCTTTAAATGTCACTGAACACAGCTTGTCCTCTTAGGTGATTCTGGTGTTGGTAAGAGCTGCATTGTTCTGCGATTTGTTCGTGGTCAGTTTGATCCAACATCCAAGGTAAGAATATGTGGCTTTTATCATTTATTTTTTAGTGTAAATTTTCCTAATATTGAAGGAATTGGTTATATGAAGTAGATTTAATGCTTACTAGATATGGTAATTATTCCATGTTGGAGTTCTTATAATTTTTAGACTTTGTAATGTAAGGTAACTGTTGGAGCTTCTTTCTTGTCACAAACAATCGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACCGCTGGTCAAGAGAGGTAACTTTCATTTATCTTTCCAGATTGCGCATCATTCATTCTACAAACCATTACAGACGCTTATTTTGTTTCTCATAATATACCCCCTTTTCTTATTTCAAGATGTACATTCTGAAGTAAAATTTGATTCCCAATCATCTGTTTCAGGTATGCTGCATTGGCACCACTGTATTATCGTGGTGCAGCGGTTGCAGTTATTGCCTACGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGTATATTTGCAGTCATCACATGCTTCTATATTTTAATTTCTTGTTTGGTATACATTACTTGAATGATGTGATTAACCAACATCAGTGAATACAACATAATCAGTTTTAATCCATTTCATTTATAATCATTGTAGTTTAGTAATTTTAAGTTACCAGATAAACATGTATCCTCGTGACTTAATGACAACACCCTTACCTCTTAATGGGTATAATATGTAGAGAAAAGGTGGTAGAATCATGCCTAGAAGACCAATATCAGCCCCAGTAAGAAGAGTTGATCATAGAATAGCTCAAAATTTGTACAGGAAAACCAAGAATAAATGGCCTCTCCGAGGACCCCATGTTTGATAAAACTCAATGTCGTCGTTTGATTTTGTAGCAGACACCACCTCGTGAAAAACAAATTTTGTTTTTTTTTTTTTTGTTTGTAGAAAGACAAGAAGTTCATAAAACCTGCATCTTAGGTGGGAATAAGTATGTACTTAGTTACTACTCCCTCCGGTCCTATATATAAGAAAAAATTCTTTTTTTAGGTACATTGAATAATTAATGTATCTCGTTAACAATGAAGACTAGATACATTAATTATTAAATGTACCTAAAAAAAGAATCTTTTCTTATATATAGGACCGGAGGGAGTAGTTATTAGAATTAGAATTGTTCACCAAACCCGTTTTATTAATCACAGTGAAGTAGCACCAATATTTGCCTGTTCTGTGCACTTTTACGTTAAAAAATCAACTTTCTGCCCCTACAGAGATTGAAATAAACCGGTTTCCTTCGTTACTCCTTACGCACGTGAGATTTCATTTATTGGTTTCTGTTAGAGTTGAAAGAAATCCAATCATTCTCATTACAAGATAAGTTGTTGAAAACGTTATCAATAGAATAGAAAATAGGTAATAATTGTCTTTGACAAACTCATGATCAATATCTATCTTTTGATGTATTGCCATTGCTCACACATGCGTAAGCGCGCAGACATGCAGATACATGCATATATTTCTACAATTTCTGTCAGTTTTGTTTTAGCAGCTGAAATATATGTAAATATTTAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCATTGGTTGGTAACAAAGCCGATCTTCACGAGAAGCGGGAGGTTGCTGTTGAGGTAATGCAACAACCTTAAATAGTATAACTATCTACTAAACAAAAAAATGAATTGTTTTCCTGATATAGTATGCTTTTTGTTTCCGTGAAGGATGGCATGGACTATGCAGAGAAGAACGGAATGTTTTTTATAGAGACATCCGCAAAGACAGCGGATAATATAAACGAACTGTTTGAGGTACCTTTGATGTTTACATCCTTTCAGTTATTCAATTTTAAATTAATTATGGGATTTGTATTTGATGAGAATGAGAATGAGTGAACAATAGAAAATCCTTAGCTCGGTTGGTGAACTAAGTGACCCTGAAGGTGTTTCAAGCAAGAAGTCCAGAGTTTAAATCCTGAAAACTAACATAACTACTAACTTACTAACATTAACCTGTGAAAAAAAGAAAATAATCTGTTATTTTGATTTTTATTGAAGTTGGGAATGGAATGGACATTCATCACATCTTACTCTTCTAACTCTACAATTGTTTTGAACCATGTTTTGAGTATAAGGTGCCAAAATGATATGGTCCGGTTTTGATGCTGATCATGTGGTATGAAGCTTAGTCTTAGGAAGTTCTGTTTATTATTGACTTACAGATCTTCGGGACTTTTCAAAGGCTGTGGTAGTAGTAAATTTTCTGTTTTTAACTTTTGTCTTTGGTCTCTTAGGACATTGTTGACTATGCTACTAGCAAGCTTCCCTATGATGTTCTTGCAGCCTGA
Protein sequence

>MS.gene005920.t1

MGCGSSFPDRDSRQLGRPSPENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIAYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVAVEDGMDYAEKNGMFFIETSAKTADNINELFEDIVDYATSKLPYDVLAA