AlfalfaGEDB | MS.gene34075

M. sativa cultivar XinJiangDaYe / MS.gene34075

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34075.t1	XP_013469456.1	99	205	1	1	1	205	1	204	2.20E-107	398.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34075.t1	Q9CB01	86.9	191	24	1	1	190	1	191	4.8e-87	322.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34075.t1	A0A072VNB2	99.0	205	1	1	1	205	1	204	1.6e-107	398.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000342	MS.gene34075	PPI
MS.gene000694	MS.gene34075	PPI
MS.gene001096	MS.gene34075	PPI
MS.gene007373	MS.gene34075	PPI
MS.gene007571	MS.gene34075	PPI
MS.gene008351	MS.gene34075	PPI
MS.gene009580	MS.gene34075	PPI
MS.gene011573	MS.gene34075	PPI
MS.gene013307	MS.gene34075	PPI
MS.gene017310	MS.gene34075	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34075.t1	MTR_1g094220	99.024	205	1	1	1	205	1	204	4.83e-150	414
MS.gene34075.t1	MTR_1g094220	98.421	190	2	1	1	190	1	189	6.24e-138	384
MS.gene34075.t1	MTR_1g094220	98.936	188	1	1	1	188	1	187	1.04e-136	381
MS.gene34075.t1	MTR_1g094220	98.936	188	1	1	1	188	1	187	7.62e-136	380
MS.gene34075.t1	MTR_3g064390	63.975	161	57	1	30	190	8	167	1.29e-73	221
MS.gene34075.t1	MTR_5g076590	62.353	170	59	2	30	199	8	172	1.83e-73	221
MS.gene34075.t1	MTR_2g102060	59.877	162	64	1	29	190	7	167	2.65e-69	210
MS.gene34075.t1	MTR_8g103550	56.024	166	72	1	25	190	2	166	8.72e-69	209
MS.gene34075.t1	MTR_3g064390	66.154	130	43	1	30	159	8	136	5.05e-59	182
MS.gene34075.t1	MTR_2g005510	48.171	164	84	1	25	188	8	170	1.47e-50	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34075.t1	AT3G54840	86.911	191	24	1	1	190	1	191	1.37e-119	337
MS.gene34075.t1	AT3G54840	87.302	189	23	1	1	188	1	189	4.49e-119	336
MS.gene34075.t1	AT3G54840	92.949	156	11	0	35	190	2	157	8.80e-106	301
MS.gene34075.t1	AT4G19640	59.259	162	65	1	29	190	7	167	1.40e-68	208
MS.gene34075.t1	AT5G45130	59.259	162	65	1	29	190	7	167	1.49e-67	206
MS.gene34075.t1	AT5G45130	59.355	155	62	1	36	190	22	175	1.56e-63	196
MS.gene34075.t1	AT4G19640	59.542	131	52	1	29	159	7	136	2.37e-53	168
MS.gene34075.t1	AT4G19640	59.542	131	52	1	29	159	7	136	1.25e-52	167
MS.gene34075.t1	AT1G09630	50.000	158	78	1	34	191	14	170	8.27e-51	164
MS.gene34075.t1	AT1G07410	47.093	172	90	1	34	205	14	184	1.76e-49	160

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Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGGAGCCGCAACCCA+TGG	0.575169	1.2:-74251715	None:intergenic
AACAGTCAAGTTTGAAATAT+GGG	0.387955	1.2:+74253263	MS.gene34075:CDS
AAGCCGATCTTCACGAGAAG+CGG	0.512350	1.2:+74254518	MS.gene34075:CDS
AAGTTACCTCTCTTGACCAG+CGG	0.701831	1.2:-74253289	None:intergenic
ACCAATGCCATCACTATATC+AGG	0.244974	1.2:-74254487	None:intergenic
ACTGTATTATCGTGGTGCAG+CGG	0.654941	1.2:+74253470	MS.gene34075:CDS
AGAGACATCCGCAAAGACAG+CGG	0.663905	1.2:+74254687	MS.gene34075:CDS
AGCCGATCTTCACGAGAAGC+GGG	0.511764	1.2:+74254519	MS.gene34075:CDS
ATGGACTATGCAGAGAAGAA+CGG	0.630459	1.2:+74254652	MS.gene34075:CDS
ATTGTTCTGCGATTTGTTCG+TGG	0.511021	1.2:+74253015	MS.gene34075:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAATAAGCGCTTGTAA+TGG	-	chr1.2:74253355-74253374	None:intergenic	30.0%
AATAATTCGCTTCATTCCAA+AGG	-	chr1.2:74252460-74252479	None:intergenic	30.0%
ACAGGAAAACCAAGAATAAA+TGG	+	chr1.2:74253861-74253880	MS.gene34075:intron	30.0%
ACATTGAGTTCTATCAAACA+TGG	-	chr1.2:74253901-74253920	None:intergenic	30.0%
ATTATACCCATTAAGAGGTA+AGG	-	chr1.2:74253753-74253772	None:intergenic	30.0%
ATTGAGTTCTATCAAACATG+GGG	-	chr1.2:74253899-74253918	None:intergenic	30.0%
ATTTAGGAGCTACAAAAACA+TGG	+	chr1.2:74254460-74254479	MS.gene34075:intron	30.0%
CATCTTGAAATAAGAAAAGG+GGG	-	chr1.2:74253390-74253409	None:intergenic	30.0%
CATTGAGTTCTATCAAACAT+GGG	-	chr1.2:74253900-74253919	None:intergenic	30.0%
CTACAGAGATTGAAATAAAC+CGG	+	chr1.2:74254159-74254178	MS.gene34075:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	74251717	74255274	74251717	ID=MS.gene34075
chr1.2	mRNA	74251717	74255274	74251717	ID=MS.gene34075.t1;Parent=MS.gene34075
chr1.2	exon	74251717	74251741	74251717	ID=MS.gene34075.t1.exon1;Parent=MS.gene34075.t1
chr1.2	CDS	74251717	74251741	74251717	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74251947	74252023	74251947	ID=MS.gene34075.t1.exon2;Parent=MS.gene34075.t1
chr1.2	CDS	74251947	74252023	74251947	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74252976	74253059	74252976	ID=MS.gene34075.t1.exon3;Parent=MS.gene34075.t1
chr1.2	CDS	74252976	74253059	74252976	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74253210	74253304	74253210	ID=MS.gene34075.t1.exon4;Parent=MS.gene34075.t1
chr1.2	CDS	74253210	74253304	74253210	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74253452	74253557	74253452	ID=MS.gene34075.t1.exon5;Parent=MS.gene34075.t1
chr1.2	CDS	74253452	74253557	74253452	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74254466	74254555	74254466	ID=MS.gene34075.t1.exon6;Parent=MS.gene34075.t1
chr1.2	CDS	74254466	74254555	74254466	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74254646	74254732	74254646	ID=MS.gene34075.t1.exon7;Parent=MS.gene34075.t1
chr1.2	CDS	74254646	74254732	74254646	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1
chr1.2	exon	74255221	74255274	74255221	ID=MS.gene34075.t1.exon8;Parent=MS.gene34075.t1
chr1.2	CDS	74255221	74255274	74255221	ID=cds.MS.gene34075.t1;Parent=MS.gene34075.t1

Gene Sequence

>MS.gene34075

ATGGGTTGCGGCTCCTCCTTTCCAGGTAAAATTTTTCAACTTTTCTTCAAATTCTCATCTTTTGACATTTAGCTGAAAAGGGGTTGGAAAAAAAATTGATTTTTTTTTTCATTGTATGGCTTCGATTTGTGATTTTGGGTTTGTGGTTTAATGGGGTTTGGTTAATTAGAAGAAATTATTGAATTTAGGGTTTGACGGGGTTTTTGGTTAATTTGATTTTGTGTTTTCAGATAGGGATTCAAGGCAGCTAGGTCGACCCAGTCCCGAGAATGGTGGAGGACAAGACGCTAAAAATCTTCGTGTTAAGGTATTCATTTTATGCCAAATTCTTTAATTTTGAAAACATGTTTTTTGTTTTGTTGTTGTTGTTGTTGTTATACCTGTTTTAAACATGGTTTTGTTCTGTTTCATGTTTCTTGTAGATTTTCTATTTGCTGTTAATTTAGGAGGTAGTTTGTTGTAATAGGTGCATGTTTTTTGTTGCAGATGGTTCATTTTGGATTTTTGTTTCACCCTATTCAAATAATTTTAATGATTGTGATTCGATGCTCAAATCCTGTATCAATTTTCTTTCTCTATGGGAGACTTTGTATTTATGCAGTAAATAGTAATTAGTTCAGCTTTTGCTTGGATTTGAGTAACTTTTTTACAAGATGGTAAAAGACAAAGGAAGTAATACAATTTTATTAAAATAACCACTGAAAGTTTAAAGCACAGTTTATTTCGGTTTATTCTTTGTTCCTTTGGAATGAAGCGAATTATTTTGTACACTTTTTCTTTTAGTTAACTGTCCTATAAGGTCTGGTATAATTTTTTGTTATGAGTTAGTAAAAGAATCACATCGAAGTTTCTGTGTCACATGTTATACTTTCTATGCTATGGCAAAGAAATAACTATCAACCACTCTTACAGTCATTTGTCAAACCTGCAAACACATCCTCAGAAGGAGTACATCAAAAACCATGTCAGCATCTCAATGATGACAATTTTCACCCATAATTAGTCTTTTGTAAAACTTGGTCTCGAAAATATGCACAACATGGAGCCATATATTTTATAGAATATATGATTTTGATTTGAAGTCGGATGTTGCCAATGTAATTATGCATTCACTTGCCAGAAATTAATTCCCAATAATAGCCATTAAAAATGAAGGGATTTAGTTGAAATTATTAATAAAAAATTCCTTCATACCTCAAATATTTTAGTTTAATCTTTGAATGACTCAATAACTAACCTTTAAATGTCACTGAACACAGCTTGTCCTCTTAGGTGATTCTGGTGTTGGTAAGAGCTGCATTGTTCTGCGATTTGTTCGTGGTCAGTTTGATCCAACATCCAAGGTAAGAATATGTGGCTTTTATCATTTCTTTTTTAGTGTAAATTTTCCTAATATTGAAGGAATTGGTTATATGAAGTAGATTTAATGCTTACTAGATATGGTAATTATTCCATGTTGGAGTTCTTATAATTTTTAGACTTTGTAATGTAAGGTAACTGTTGGAGCTTCTTTCTTGTCACAAACAATCGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACCGCTGGTCAAGAGAGGTAACTTTCATTTATCTTTCCAGATTGCGCATCATTCATTCTACAAACCATTACAAGCGCTTATTTTGTTTCTCATAATATACCCCCTTTTCTTATTTCAAGATGTACATTCTGAAGTAAAATTTGATTCCCAATCATCTGTTTCAGGTATGCTGCATTGGCACCACTGTATTATCGTGGTGCAGCGGTTGCAGTTATTGCCTACGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGTATATTTGCAGTCATCACATGCTTCTATATTTTAATTTCTTGTTTGGTATAGTTATTACTTGAATGATGTGATTAACCAACATCAGTGAATACAACATAATCAGTTTTAATCCATTTCATTTATAATCATTGTAGTTTAGTAATTTTAAGTTACCAGATAAACATGTATCCTCGTGACTTAATGACAACACCCTTACCTCTTAATGGGTATAATATGTAGAGAAAAGGTGGTAGAATCATGCCTAGAAGACCAATATCAGCCCCAGTAAGAAGAGTTGATCATAGAATAGCTCAAAATTTGTACAGGAAAACCAAGAATAAATGGCCTCTCCGAGGACCCCATGTTTGATAGAACTCAATGTCGTCGTTTGATTTTGTAGCAGACACCACCTCGTGAAAAACAAATTTTGTTTTTGTTTTTGTTTGTAGAAAGACAAGAAGTTCATAAAACCTGCATCTTAGGTGGGAATAAGTATGTACTTAGTTACTAGTTATTAGAATTAGAATTGTTCACCAAACCCGTTTTATTAATCACAGTGAAGTAGCACCAATATTTGCCTGTTCTGTGCACTTTTACGTTAAAAAATCAACTTTCTGCCCCTACAGAGATTGAAATAAACCGGGTTCCTTCGTTACTCCTTACGCACGTGAGATTTCATTTATTGGTTTCTGTTAGAGTTGAAAGAAATCCAATCATTCTCATTACAAGATAAGTTGTTGAAAACGTTATCAAAAGAATAGAAAATAGGTAATAATTGTCTTTGACAAACTCATGATCAATATCTATCTTTTGATGTATTGCCATTGCTCACACATGCGTAAGCGCGCAGACATGCAGATACATGCATATATTTCTACAATTTCTGTCAGTTTTGTTTTAGCAGCTGAAATATATGTAAATATTTAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCATTGGTTGGTAACAAAGCCGATCTTCACGAGAAGCGGGAGGTTGCTGTTGAGGTAATGCAACAACCTTAAATAGTATAACTATCTACTAAACAAAACAATGAATTGTTTTCCTGATATAGTATGCTTTTTGTTTCCGTGAAGGATGGCATGGACTATGCAGAGAAGAACGGAATGTTTTTTATAGAGACATCCGCAAAGACAGCGGATAATATAAACGAACTGTTTGAGGTACCTTTGATGTTTACATCCCTTTCAGTTATTCAATTTTAAATTAATTATGGGATTTTGTATTTGATGAGAATGGGAATGAGTGAACAATAGAAAATAATCCCTTAGCTTGGTTGGTGAACTAAGTGACCCTGAAGGTGTTTTAAGCAAGAAGTCCAGAGTTCAAATCCTGAAAACTAACATAACTACTAACTTACTAACATTAACCTGTGAAAAAAAGAAAATAATCTGTTATTTTGATTTTTATTGAAGTTGGGAATGGAATGGACATTCATCACATCTTACGCTTCTAACTCTACAATTGTTTTGAACCATGTTTTGAGTATAAGGTGCCAAAATGATATGGTCCGGTTTTGATGCTGATCATGTGGTATGAAGCTTGGTCTTGGGAAGTTCTGTTTATTATTGACTTACAGATCTTCGGGACGTTTCAAAGGCTGTGGTAGTAGTAAATTTTCTGTTTTTAACTTTTGTCTTTGGTCTCTTAGGACATTGTTGACTATGCTACTAGCAAGCTTCCCTATGATGTTCTTGCTGCCTGA

Protein sequence

>MS.gene34075.t1

MGCGSSFPDRDSRQLGRPSPENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIAYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVAVEDGMDYAEKNGMFFIETSAKTADNINELFEDIVDYATSKLPYDVLAA