Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46266.t1 | XP_003602053.1 | 98.4 | 502 | 8 | 0 | 11 | 512 | 30 | 531 | 1.30E-270 | 941.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46266.t1 | Q8H4H5 | 70.8 | 504 | 141 | 2 | 11 | 511 | 37 | 537 | 8.9e-199 | 694.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46266.t1 | G7J4Z1 | 98.4 | 502 | 8 | 0 | 11 | 512 | 30 | 531 | 9.6e-271 | 941.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene46266 | -0.808953 | 2.40E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene46266 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene46266 | -0.82362 | 1.26E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene46266 | -0.819262 | 1.27E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene46266 | -0.80442 | 2.18E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene46266 | -0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene46266 | -0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene46266 | -0.805279 | 1.44E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene46266 | -0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene46266 | -0.803663 | 3.13E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene46266 | -0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene051996 | MS.gene46266 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene05240 | MS.gene46266 | 0.814084 | 1.84E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene46266 | -0.811846 | 5.71E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene46266 | -0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene053318 | MS.gene46266 | -0.814816 | 1.27E-51 | -1.69E-46 |
| MS.gene053319 | MS.gene46266 | 0.822005 | 2.99E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene46266 | -0.820795 | 5.68E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene46266 | -0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene46266 | -0.811913 | 5.52E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene46266 | 0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene46266 | -0.824624 | 7.30E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene46266 | -0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene46266 | -0.804595 | 2.00E-49 | -1.69E-46 |
| MS.gene056076 | MS.gene46266 | 0.808584 | 2.88E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene46266 | -0.835535 | 1.59E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene46266 | 0.812493 | 4.12E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene46266 | -0.810427 | 1.16E-50 | -1.69E-46 |
| MS.gene056448 | MS.gene46266 | -0.800774 | 1.23E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene46266 | -0.80599 | 1.02E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene46266 | 0.801409 | 9.13E-49 | -1.69E-46 |
| MS.gene056924 | MS.gene46266 | 0.802417 | 5.67E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene46266 | -0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene057086 | MS.gene46266 | -0.802795 | 4.74E-49 | -1.69E-46 |
| MS.gene057289 | MS.gene46266 | -0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene46266 | -0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene46266 | -0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene46266 | -0.824537 | 7.65E-54 | -1.69E-46 |
| MS.gene058691 | MS.gene46266 | 0.827376 | 1.62E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene46266 | -0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene46266 | -0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene46266 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene46266 | -0.814465 | 1.52E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene46266 | -0.837684 | 4.50E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene46266 | -0.80318 | 3.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46266.t1 | MTR_3g088440 | 98.242 | 512 | 9 | 0 | 1 | 512 | 20 | 531 | 0.0 | 1024 |
| MS.gene46266.t1 | MTR_3g088460 | 82.456 | 513 | 86 | 1 | 4 | 512 | 26 | 538 | 0.0 | 831 |
| MS.gene46266.t1 | MTR_3g088440 | 98.123 | 373 | 7 | 0 | 1 | 373 | 20 | 392 | 0.0 | 743 |
| MS.gene46266.t1 | MTR_2g104990 | 58.789 | 512 | 203 | 3 | 4 | 512 | 56 | 562 | 0.0 | 624 |
| MS.gene46266.t1 | MTR_2g104990 | 58.789 | 512 | 203 | 3 | 4 | 512 | 31 | 537 | 0.0 | 623 |
| MS.gene46266.t1 | MTR_3g088460 | 81.414 | 382 | 67 | 1 | 4 | 381 | 26 | 407 | 0.0 | 621 |
| MS.gene46266.t1 | MTR_5g016270 | 42.637 | 455 | 237 | 8 | 15 | 461 | 52 | 490 | 1.88e-107 | 330 |
| MS.gene46266.t1 | MTR_3g102620 | 42.418 | 455 | 238 | 8 | 15 | 461 | 66 | 504 | 1.99e-107 | 330 |
| MS.gene46266.t1 | MTR_4g095075 | 42.733 | 461 | 240 | 8 | 15 | 467 | 53 | 497 | 5.80e-106 | 326 |
| MS.gene46266.t1 | MTR_8g028050 | 39.780 | 455 | 250 | 7 | 15 | 461 | 83 | 521 | 1.69e-96 | 303 |
| MS.gene46266.t1 | MTR_4g094602 | 76.224 | 143 | 31 | 1 | 186 | 325 | 1 | 143 | 4.46e-70 | 221 |
| MS.gene46266.t1 | MTR_0041s0030 | 26.603 | 421 | 261 | 11 | 17 | 422 | 31 | 418 | 4.34e-33 | 134 |
| MS.gene46266.t1 | MTR_2g062640 | 26.027 | 365 | 213 | 11 | 63 | 422 | 6 | 318 | 7.99e-22 | 97.8 |
| MS.gene46266.t1 | MTR_2g062640 | 26.124 | 356 | 235 | 11 | 77 | 422 | 13 | 350 | 9.33e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46266.t1 | AT1G15960 | 59.570 | 512 | 188 | 5 | 6 | 512 | 21 | 518 | 0.0 | 618 |
| MS.gene46266.t1 | AT1G80830 | 59.519 | 499 | 197 | 1 | 10 | 508 | 38 | 531 | 0.0 | 611 |
| MS.gene46266.t1 | AT1G80830 | 59.519 | 499 | 197 | 1 | 10 | 508 | 38 | 531 | 0.0 | 611 |
| MS.gene46266.t1 | AT1G47240 | 40.812 | 468 | 253 | 8 | 2 | 461 | 52 | 503 | 1.92e-107 | 330 |
| MS.gene46266.t1 | AT5G67330 | 42.391 | 460 | 243 | 9 | 12 | 464 | 46 | 490 | 6.98e-107 | 328 |
| MS.gene46266.t1 | AT2G23150 | 43.333 | 420 | 222 | 6 | 15 | 426 | 53 | 464 | 5.29e-104 | 321 |
| MS.gene46266.t1 | AT4G18790 | 39.744 | 468 | 258 | 8 | 2 | 461 | 54 | 505 | 1.61e-99 | 310 |
| MS.gene46266.t1 | AT5G03280 | 27.338 | 417 | 274 | 8 | 16 | 422 | 16 | 413 | 2.27e-35 | 141 |
Find 117 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCATTGGTGGTTCTTC+TGG | 0.206134 | 3.1:-71262019 | MS.gene46266:CDS |
| AGCCGATGCTATTGCCCTTT+TGG | 0.215573 | 3.1:-71263042 | MS.gene46266:CDS |
| TACTATTCAACATCCCATTA+TGG | 0.239108 | 3.1:-71264201 | MS.gene46266:CDS |
| TTGTTGTGGTTGGTACTTAT+TGG | 0.281980 | 3.1:-71264847 | MS.gene46266:CDS |
| AAGCAATACTTCACAAATAA+TGG | 0.285217 | 3.1:+71264434 | None:intergenic |
| TAGCAGCAGCACAACCAAAA+TGG | 0.288834 | 3.1:-71261822 | MS.gene46266:CDS |
| AAGGAAAGAAGCGGAGTTAA+GGG | 0.309653 | 3.1:+71262456 | None:intergenic |
| CGCGCTTATAATTCAGTCAT+TGG | 0.312613 | 3.1:-71264815 | MS.gene46266:CDS |
| AAGCAGTGCTATGGCATAAA+TGG | 0.318535 | 3.1:+71262261 | None:intergenic |
| ATTCTTGTGAGGTCCCATTT+TGG | 0.321502 | 3.1:+71261808 | None:intergenic |
| TATTTGTGAAGTATTGCTTA+TGG | 0.321986 | 3.1:-71264430 | MS.gene46266:CDS |
| TTGATGCCTCTCACAGAATT+AGG | 0.325074 | 3.1:+71262800 | None:intergenic |
| CCCAGCTTCTGGTGTACTTA+AGG | 0.325720 | 3.1:-71263102 | MS.gene46266:CDS |
| GGCTCCTTCACCAGCCAGTT+TGG | 0.327974 | 3.1:+71263067 | None:intergenic |
| AAACTTAAGGAGTGGAATTA+AGG | 0.328480 | 3.1:+71261844 | None:intergenic |
| GAGAGTTACTTACTGTTTCC+AGG | 0.331655 | 3.1:+71265372 | None:intergenic |
| CAGTCATTGGCTGCAAATCT+TGG | 0.336265 | 3.1:-71264802 | MS.gene46266:CDS |
| ATGCAAAACCAAGTGGAAAA+AGG | 0.336749 | 3.1:-71261448 | MS.gene46266:CDS |
| TCAGCTAAATCTTCTCTATA+AGG | 0.339264 | 3.1:+71261388 | None:intergenic |
| AGTCTTGCTGTTGCCATCAT+TGG | 0.340050 | 3.1:-71262031 | MS.gene46266:CDS |
| TAGCCTTGGATCCTTTATTC+TGG | 0.340489 | 3.1:+71261355 | None:intergenic |
| GAAGGAAAGAAGCGGAGTTA+AGG | 0.344893 | 3.1:+71262455 | None:intergenic |
| AACAGAACTCCTGCCCATAA+TGG | 0.347335 | 3.1:+71264187 | None:intergenic |
| TGCTCTGCCAATGACCTATC+TGG | 0.350602 | 3.1:-71262508 | MS.gene46266:CDS |
| AGAAAACCAGGGCCTATATA+TGG | 0.355996 | 3.1:+71265417 | None:intergenic |
| ATCTCATGGATACTAGGTTT+TGG | 0.367043 | 3.1:-71261670 | MS.gene46266:CDS |
| CCAGCTTCTGGTGTACTTAA+GGG | 0.377926 | 3.1:-71263101 | MS.gene46266:CDS |
| GCAATATAAACTGCCATTAG+AGG | 0.379665 | 3.1:+71261541 | None:intergenic |
| GCTCCTTCACCAGCCAGTTT+GGG | 0.383361 | 3.1:+71263068 | None:intergenic |
| ATGAACACATTTGCCACCTT+TGG | 0.395316 | 3.1:+71261580 | None:intergenic |
| ACAGAACTCCTGCCCATAAT+GGG | 0.402615 | 3.1:+71264188 | None:intergenic |
| GATTATAGTGTTTCCTCTAA+TGG | 0.404806 | 3.1:-71261554 | MS.gene46266:CDS |
| ATATCCCGCTACCAGAATAA+AGG | 0.421458 | 3.1:-71261366 | None:intergenic |
| AAGGTGGCAAATGTGTTCAT+TGG | 0.426629 | 3.1:-71261577 | MS.gene46266:CDS |
| AGAAAGTATACGGCATGATA+AGG | 0.426875 | 3.1:+71263015 | None:intergenic |
| ATTACAATCTCATGGATACT+AGG | 0.429574 | 3.1:-71261676 | MS.gene46266:CDS |
| ACTATTCAACATCCCATTAT+GGG | 0.435828 | 3.1:-71264200 | MS.gene46266:CDS |
| AAACCGATGCGATGATGATA+AGG | 0.436840 | 3.1:+71261987 | None:intergenic |
| ACTTACTGTTTCCAGGATCA+AGG | 0.437998 | 3.1:+71265379 | None:intergenic |
| TTGTGCTGCTGCTAAACTTA+AGG | 0.438674 | 3.1:+71261831 | None:intergenic |
| AGGTGGCAAATGTGTTCATT+GGG | 0.438921 | 3.1:-71261576 | MS.gene46266:CDS |
| TCTTTGGCTTACCTTGATCC+TGG | 0.439561 | 3.1:-71265390 | MS.gene46266:CDS |
| TATAGGGTTTCTTAGACATA+AGG | 0.440552 | 3.1:-71262105 | MS.gene46266:intron |
| CTCCGCTTCTTTCCTTCTCA+AGG | 0.452971 | 3.1:-71262449 | MS.gene46266:intron |
| AGCAGCAGCACAACCAAAAT+GGG | 0.460120 | 3.1:-71261821 | MS.gene46266:CDS |
| TGGGCAGGAGTTCTGTTGAC+TGG | 0.463210 | 3.1:-71264181 | MS.gene46266:CDS |
| AAGTACCTCGTCATGATTTG+AGG | 0.466681 | 3.1:+71265623 | None:intergenic |
| CCCTTAAGTACACCAGAAGC+TGG | 0.474697 | 3.1:+71263101 | None:intergenic |
| GAAAGTATACGGCATGATAA+GGG | 0.476396 | 3.1:+71263016 | None:intergenic |
| GTGGAAACTGATTTGCAAGC+TGG | 0.476839 | 3.1:-71265043 | MS.gene46266:CDS |
| GCCATAGCACTGCTTGCCTC+AGG | 0.483626 | 3.1:-71262253 | MS.gene46266:CDS |
| CTTGCTGTTGCCATCATTGG+TGG | 0.486524 | 3.1:-71262028 | MS.gene46266:CDS |
| TTGTATTCAGTTGTTGTGGT+TGG | 0.487061 | 3.1:-71264857 | MS.gene46266:intron |
| GCCAGAAGAACCACCAATGA+TGG | 0.490481 | 3.1:+71262018 | None:intergenic |
| TAGACATAAGGATGAAAAGA+TGG | 0.495109 | 3.1:-71262093 | MS.gene46266:CDS |
| GAGTGGATTCGCTTTGTTTG+TGG | 0.496012 | 3.1:-71262575 | MS.gene46266:CDS |
| GGGAATGTTTGTGCCCAAAC+TGG | 0.496192 | 3.1:-71263081 | MS.gene46266:CDS |
| TAAGGATGAAAAGATGGAAA+AGG | 0.497031 | 3.1:-71262087 | MS.gene46266:CDS |
| CCCCAAAAGGGCAATAGCAT+CGG | 0.499242 | 3.1:+71263040 | None:intergenic |
| TGGATCCTTTATTCTGGTAG+CGG | 0.502929 | 3.1:+71261361 | None:intergenic |
| AACAATCCTAGTATTTGTAA+TGG | 0.508316 | 3.1:-71263162 | MS.gene46266:CDS |
| GGATCCTTTATTCTGGTAGC+GGG | 0.510528 | 3.1:+71261362 | None:intergenic |
| TGCAGGTCATTACAATCTCA+TGG | 0.512529 | 3.1:-71261684 | MS.gene46266:intron |
| TCCTGAGGCAAGCAGTGCTA+TGG | 0.526104 | 3.1:+71262252 | None:intergenic |
| CCTTAAGTACACCAGAAGCT+GGG | 0.527484 | 3.1:+71263102 | None:intergenic |
| TGTTGCAATGATTTCTGTGT+CGG | 0.531965 | 3.1:-71262539 | MS.gene46266:CDS |
| ACTTGATTGTGACAGTGATT+GGG | 0.532187 | 3.1:-71264243 | MS.gene46266:intron |
| GTTGCAATGATTTCTGTGTC+GGG | 0.533159 | 3.1:-71262538 | MS.gene46266:CDS |
| GCCAAAGAAACAAGAAAACC+AGG | 0.535144 | 3.1:+71265405 | None:intergenic |
| ATTGTCTCCAGATAGGTCAT+TGG | 0.535156 | 3.1:+71262501 | None:intergenic |
| TCAGTACTGCCTTTGTGAAG+TGG | 0.535986 | 3.1:-71261621 | MS.gene46266:CDS |
| ACTTGTATGTAGAATGTGTT+GGG | 0.538453 | 3.1:-71262298 | MS.gene46266:intron |
| CAACTTTACATACTTCTGAA+AGG | 0.539753 | 3.1:+71264462 | None:intergenic |
| TTCAACATCCCATTATGGGC+AGG | 0.543459 | 3.1:-71264196 | MS.gene46266:CDS |
| GCAAATCTTGGCGTAACCAC+CGG | 0.550727 | 3.1:-71264790 | MS.gene46266:intron |
| ACCATCACAGGAACTTATGC+AGG | 0.551377 | 3.1:-71262220 | MS.gene46266:CDS |
| GTTCAACATTGTCTCCAGAT+AGG | 0.551581 | 3.1:+71262494 | None:intergenic |
| TTAAATTAGGAACCTTGAGA+AGG | 0.552918 | 3.1:+71262437 | None:intergenic |
| ATGTTTGTGCCCAAACTGGC+TGG | 0.553195 | 3.1:-71263077 | MS.gene46266:CDS |
| TTGCTTATGGTTATTAGCAG+AGG | 0.558459 | 3.1:-71264417 | MS.gene46266:CDS |
| AACAGCAAGACTAGGTGCTA+TGG | 0.561217 | 3.1:+71262042 | None:intergenic |
| AAGCGAATCCACTCTCATAG+AGG | 0.564674 | 3.1:+71262584 | None:intergenic |
| ATGCAGCCATTACAAATACT+AGG | 0.564740 | 3.1:+71263156 | None:intergenic |
| TTTGAGTCTGCAGAGGTTTG+GGG | 0.565267 | 3.1:-71264140 | MS.gene46266:intron |
| AAGGGCAATAGCATCGGCTA+CGG | 0.568499 | 3.1:+71263046 | None:intergenic |
| AGGAGTGGAATTAAGGCGAA+TGG | 0.571377 | 3.1:+71261851 | None:intergenic |
| GGACAAAGTTCTACCATCAC+AGG | 0.573167 | 3.1:-71262232 | MS.gene46266:CDS |
| CTTGTTGTATTCAGTTGTTG+TGG | 0.573687 | 3.1:-71264861 | MS.gene46266:intron |
| CTTAAGTACACCAGAAGCTG+GGG | 0.583089 | 3.1:+71263103 | None:intergenic |
| TGCAGGACAGTACATCATGC+AGG | 0.588205 | 3.1:-71262203 | MS.gene46266:intron |
| GTGCCCAAACTGGCTGGTGA+AGG | 0.595265 | 3.1:-71263071 | MS.gene46266:CDS |
| AACTTGTATGTAGAATGTGT+TGG | 0.595481 | 3.1:-71262299 | MS.gene46266:intron |
| AGATATTTCCTCTATGAGAG+TGG | 0.600417 | 3.1:-71262592 | MS.gene46266:CDS |
| AAAGTACCTAATTCTGTGAG+AGG | 0.602100 | 3.1:-71262806 | MS.gene46266:CDS |
| TCGCCTTATCATCATCGCAT+CGG | 0.604941 | 3.1:-71261990 | MS.gene46266:intron |
| ATGATGGCAACAGCAAGACT+AGG | 0.605747 | 3.1:+71262034 | None:intergenic |
| ACATAGTAGTCTACCAAAGG+TGG | 0.621719 | 3.1:-71261593 | MS.gene46266:CDS |
| TCCTGCATAAGTTCCTGTGA+TGG | 0.622524 | 3.1:+71262219 | None:intergenic |
| TACAGTAATGCAAAACCAAG+TGG | 0.623131 | 3.1:-71261455 | MS.gene46266:CDS |
| AATCTTCTCTATAAGGAACA+TGG | 0.634971 | 3.1:+71261395 | None:intergenic |
| AATACATAGTAGTCTACCAA+AGG | 0.639513 | 3.1:-71261596 | MS.gene46266:CDS |
| AACCTTGAGAAGGAAAGAAG+CGG | 0.643227 | 3.1:+71262447 | None:intergenic |
| ATAGCACAAGAGCAGAGTGG+AGG | 0.661177 | 3.1:+71262834 | None:intergenic |
| ATAGCAGCTGACATACCTGA+AGG | 0.665156 | 3.1:-71264386 | MS.gene46266:intron |
| TGGAGCTAACCACGGATACG+AGG | 0.667237 | 3.1:-71265023 | MS.gene46266:intron |
| CCAAAGAAACAAGAAAACCA+GGG | 0.671441 | 3.1:+71265406 | None:intergenic |
| CTGCTGCTAAACTTAAGGAG+TGG | 0.674326 | 3.1:+71261836 | None:intergenic |
| TAGATAGCACAAGAGCAGAG+TGG | 0.681480 | 3.1:+71262831 | None:intergenic |
| GAATAGTATGTTGAGAGCAA+AGG | 0.682866 | 3.1:+71264216 | None:intergenic |
| TTGCAAGCTGGAGCTAACCA+CGG | 0.687380 | 3.1:-71265031 | MS.gene46266:CDS |
| ACAATAATAGAATTCTTGTG+AGG | 0.689916 | 3.1:+71261797 | None:intergenic |
| GAAGGTAAGGTAGATAACTG+AGG | 0.700238 | 3.1:+71261519 | None:intergenic |
| TTAAGTACACCAGAAGCTGG+GGG | 0.708850 | 3.1:+71263104 | None:intergenic |
| ATGTATTATCCACTTCACAA+AGG | 0.714900 | 3.1:+71261612 | None:intergenic |
| GATGGTAGAACTTTGTCCTG+AGG | 0.715483 | 3.1:+71262237 | None:intergenic |
| AACATCCTCAAATCATGACG+AGG | 0.727935 | 3.1:-71265628 | MS.gene46266:intron |
| ACTTCACAAAGGCAGTACTG+AGG | 0.732634 | 3.1:+71261623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAAATTTCTTATTATA+AGG | + | chr3.1:71262435-71262454 | None:intergenic | 10.0% |
| !! | TTGAAATTCAAAATATAATT+TGG | + | chr3.1:71263530-71263549 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTATAAATGAA+AGG | - | chr3.1:71262444-71262463 | MS.gene46266:intron | 10.0% |
| !!! | ATTTATTTTATATAGTTTAG+GGG | + | chr3.1:71261731-71261750 | None:intergenic | 10.0% |
| !!! | GTATTTATTTTATATAGTTT+AGG | + | chr3.1:71261733-71261752 | None:intergenic | 10.0% |
| !! | AATTCAAAATATAATTTGGT+AGG | + | chr3.1:71263526-71263545 | None:intergenic | 15.0% |
| !! | GAAATTAATAAATTTAGCTA+TGG | - | chr3.1:71264239-71264258 | MS.gene46266:intron | 15.0% |
| !! | TCAAAATTACATAAATTGTA+GGG | + | chr3.1:71263620-71263639 | None:intergenic | 15.0% |
| !! | TTCAAAATTACATAAATTGT+AGG | + | chr3.1:71263621-71263640 | None:intergenic | 15.0% |
| !!! | TTTTATTATTTATATTTGGC+AGG | - | chr3.1:71262511-71262530 | MS.gene46266:CDS | 15.0% |
| !! | AAATTTATTAATTTCCTGAG+TGG | + | chr3.1:71264234-71264253 | None:intergenic | 20.0% |
| !! | ATGTAACATATGTAATCTTA+AGG | + | chr3.1:71263780-71263799 | None:intergenic | 20.0% |
| !! | CAAAATTACATAAATTGTAG+GGG | + | chr3.1:71263619-71263638 | None:intergenic | 20.0% |
| !! | GAAAACTTGAATAAATTAGA+AGG | + | chr3.1:71261425-71261444 | None:intergenic | 20.0% |
| !! | TACATAAAGATAGTAATAGT+GGG | + | chr3.1:71263196-71263215 | None:intergenic | 20.0% |
| !! | TACTAGTAGTGAATTAAATT+AGG | + | chr3.1:71264581-71264600 | None:intergenic | 20.0% |
| !! | TACTATTGTTAAAAGAAACT+AGG | + | chr3.1:71261493-71261512 | None:intergenic | 20.0% |
| !! | TAGTATATAATAAGTTGCTA+CGG | - | chr3.1:71264596-71264615 | MS.gene46266:intron | 20.0% |
| !! | TATAACAAAATGTTAGAAGA+AGG | + | chr3.1:71262090-71262109 | None:intergenic | 20.0% |
| !! | TGTAACATATGTAATCTTAA+GGG | + | chr3.1:71263779-71263798 | None:intergenic | 20.0% |
| !! | TTACATAAAGATAGTAATAG+TGG | + | chr3.1:71263197-71263216 | None:intergenic | 20.0% |
| !! | TTTACTGAATTTAGATTGTT+TGG | - | chr3.1:71264867-71264886 | MS.gene46266:intron | 20.0% |
| !!! | ATATAGGAAAAGAAAGTATA+CGG | + | chr3.1:71264000-71264019 | None:intergenic | 20.0% |
| !!! | ATCCTTGATTTTTATTTGAA+TGG | - | chr3.1:71263288-71263307 | MS.gene46266:intron | 20.0% |
| !!! | TACTGTATGATATAAACTTT+TGG | + | chr3.1:71264087-71264106 | None:intergenic | 20.0% |
| !!! | TCTTGTATATATACATGTTT+TGG | - | chr3.1:71261448-71261467 | MS.gene46266:CDS | 20.0% |
| !!! | TTGAATTAGTTTGATTGAAA+AGG | + | chr3.1:71262685-71262704 | None:intergenic | 20.0% |
| ! | AAAAGGACAAAAATACAAGA+CGG | + | chr3.1:71262668-71262687 | None:intergenic | 25.0% |
| ! | AACAATCCTAGTATTTGTAA+TGG | - | chr3.1:71263840-71263859 | MS.gene46266:intron | 25.0% |
| ! | AAGCAATACTTCACAAATAA+TGG | + | chr3.1:71262571-71262590 | None:intergenic | 25.0% |
| ! | ACAATAATAGAATTCTTGTG+AGG | + | chr3.1:71265208-71265227 | None:intergenic | 25.0% |
| ! | AGTCCATGCTATTAAAATAT+TGG | + | chr3.1:71261823-71261842 | None:intergenic | 25.0% |
| ! | ATTAAAGTAGTAAAAAGTCC+AGG | + | chr3.1:71263351-71263370 | None:intergenic | 25.0% |
| ! | ATTGATGAATGCTATAGTTT+AGG | - | chr3.1:71261845-71261864 | MS.gene46266:CDS | 25.0% |
| ! | GTCCATGCTATTAAAATATT+GGG | + | chr3.1:71261822-71261841 | None:intergenic | 25.0% |
| ! | TAGAAGTTAAATGTGCAATT+AGG | + | chr3.1:71264304-71264323 | None:intergenic | 25.0% |
| ! | TCAAAATATAATTTGGTAGG+AGG | + | chr3.1:71263523-71263542 | None:intergenic | 25.0% |
| ! | TCCATGCTATTAAAATATTG+GGG | + | chr3.1:71261821-71261840 | None:intergenic | 25.0% |
| ! | TGCCATTCAAATAAAAATCA+AGG | + | chr3.1:71263293-71263312 | None:intergenic | 25.0% |
| ! | TTAAAGTAGTAAAAAGTCCA+GGG | + | chr3.1:71263350-71263369 | None:intergenic | 25.0% |
| ! | TTAGAAAAATTCAAGTCTCA+TGG | - | chr3.1:71262242-71262261 | MS.gene46266:CDS | 25.0% |
| ! | TTGATGAATGCTATAGTTTA+GGG | - | chr3.1:71261846-71261865 | MS.gene46266:CDS | 25.0% |
| !! | AGAAAGTTTTTGCCATATAT+AGG | - | chr3.1:71261573-71261592 | MS.gene46266:CDS | 25.0% |
| !! | CTATTTAACGATTTTGTTGA+AGG | - | chr3.1:71264843-71264862 | MS.gene46266:CDS | 25.0% |
| !! | CTTTTAGATTTCATTTGTCA+TGG | - | chr3.1:71262990-71263009 | MS.gene46266:intron | 25.0% |
| !! | GAATTTTTCTAAATACTCAC+CGG | + | chr3.1:71262234-71262253 | None:intergenic | 25.0% |
| !! | TTTAACTTCTATGTAGACAT+TGG | - | chr3.1:71264313-71264332 | MS.gene46266:intron | 25.0% |
| !!! | TAATGATGGACAAGTTATAT+AGG | + | chr3.1:71264016-71264035 | None:intergenic | 25.0% |
| !!! | TATTTGTGAAGTATTGCTTA+TGG | - | chr3.1:71262572-71262591 | MS.gene46266:CDS | 25.0% |
| !!! | TTTTTTTAATCTTAACCCTC+CGG | + | chr3.1:71263141-71263160 | None:intergenic | 25.0% |
| AAACTTAAGGAGTGGAATTA+AGG | + | chr3.1:71265161-71265180 | None:intergenic | 30.0% | |
| AAATATAAATCACCACCTTC+AGG | + | chr3.1:71262634-71262653 | None:intergenic | 30.0% | |
| AACAAAATGTTAGAAGAAGG+AGG | + | chr3.1:71262087-71262106 | None:intergenic | 30.0% | |
| AACTTGTATGTAGAATGTGT+TGG | - | chr3.1:71264703-71264722 | MS.gene46266:intron | 30.0% | |
| AATACATAGTAGTCTACCAA+AGG | - | chr3.1:71265406-71265425 | MS.gene46266:CDS | 30.0% | |
| AATATTGGGGACTAAATTGA+CGG | + | chr3.1:71261808-71261827 | None:intergenic | 30.0% | |
| AATCTTCTCTATAAGGAACA+TGG | + | chr3.1:71265610-71265629 | None:intergenic | 30.0% | |
| ACGGAATGTGATATACTTTA+GGG | + | chr3.1:71261789-71261808 | None:intergenic | 30.0% | |
| ACTATTCAACATCCCATTAT+GGG | - | chr3.1:71262802-71262821 | MS.gene46266:CDS | 30.0% | |
| ACTTGTATGTAGAATGTGTT+GGG | - | chr3.1:71264704-71264723 | MS.gene46266:intron | 30.0% | |
| AGAAAAACGTGAAACCAAAA+AGG | + | chr3.1:71261655-71261674 | None:intergenic | 30.0% | |
| AGAAGAAAATGTGGATTTCA+TGG | - | chr3.1:71263646-71263665 | MS.gene46266:intron | 30.0% | |
| AGTGCATGTGAGATATAATT+TGG | + | chr3.1:71264666-71264685 | None:intergenic | 30.0% | |
| ATGTATTATCCACTTCACAA+AGG | + | chr3.1:71265393-71265412 | None:intergenic | 30.0% | |
| ATTACAATCTCATGGATACT+AGG | - | chr3.1:71265326-71265345 | MS.gene46266:intron | 30.0% | |
| CAACTTTACATACTTCTGAA+AGG | + | chr3.1:71262543-71262562 | None:intergenic | 30.0% | |
| CATATGTAATCTTAAGGGTA+AGG | + | chr3.1:71263774-71263793 | None:intergenic | 30.0% | |
| CATTGATAGACACAAAAATC+TGG | - | chr3.1:71261546-71261565 | MS.gene46266:CDS | 30.0% | |
| CGTCCTAAATAGAATTCATA+AGG | - | chr3.1:71262277-71262296 | MS.gene46266:CDS | 30.0% | |
| CTGAATTTAGATTGTTTGGT+TGG | - | chr3.1:71264871-71264890 | MS.gene46266:intron | 30.0% | |
| GAAAAAGGAATTGTGGATAA+TGG | - | chr3.1:71265569-71265588 | MS.gene46266:intron | 30.0% | |
| GATTATAGTGTTTCCTCTAA+TGG | - | chr3.1:71265448-71265467 | MS.gene46266:CDS | 30.0% | |
| GTTTGATCTAATAGTTGCTA+TGG | - | chr3.1:71262351-71262370 | MS.gene46266:intron | 30.0% | |
| TAAGGATGAAAAGATGGAAA+AGG | - | chr3.1:71264915-71264934 | MS.gene46266:intron | 30.0% | |
| TACTATTCAACATCCCATTA+TGG | - | chr3.1:71262801-71262820 | MS.gene46266:CDS | 30.0% | |
| TAGACATAAGGATGAAAAGA+TGG | - | chr3.1:71264909-71264928 | MS.gene46266:intron | 30.0% | |
| TATAGGGTTTCTTAGACATA+AGG | - | chr3.1:71264897-71264916 | MS.gene46266:intron | 30.0% | |
| TCAGCTAAATCTTCTCTATA+AGG | + | chr3.1:71265617-71265636 | None:intergenic | 30.0% | |
| TTAAATTAGGAACCTTGAGA+AGG | + | chr3.1:71264568-71264587 | None:intergenic | 30.0% | |
| TTCTATGTGTTTGTGCTTAT+TGG | - | chr3.1:71261908-71261927 | MS.gene46266:intron | 30.0% | |
| ! | ATTCTATTTAGGACGTATCT+CGG | + | chr3.1:71262272-71262291 | None:intergenic | 30.0% |
| !! | AGTAAGTTGATGATTGACTT+GGG | + | chr3.1:71262303-71262322 | None:intergenic | 30.0% |
| !! | ATTGTTTGGTTGGTGATATA+GGG | - | chr3.1:71264881-71264900 | MS.gene46266:intron | 30.0% |
| !! | TAGTAAGTTGATGATTGACT+TGG | + | chr3.1:71262304-71262323 | None:intergenic | 30.0% |
| !!! | TACATGTACCTTTTTTGTAC+AGG | - | chr3.1:71263795-71263814 | MS.gene46266:intron | 30.0% |
| !!! | TCCCCAATATTTTAATAGCA+TGG | - | chr3.1:71261817-71261836 | MS.gene46266:CDS | 30.0% |
| AACTTGATTGTGACAGTGAT+TGG | - | chr3.1:71262758-71262777 | MS.gene46266:intron | 35.0% | |
| ACCAGACTTTACTTACCTAT+CGG | - | chr3.1:71263070-71263089 | MS.gene46266:CDS | 35.0% | |
| ACTTGATTGTGACAGTGATT+GGG | - | chr3.1:71262759-71262778 | MS.gene46266:intron | 35.0% | |
| AGATATTTCCTCTATGAGAG+TGG | - | chr3.1:71264410-71264429 | MS.gene46266:CDS | 35.0% | |
| AGTAATAAGAAGGAAGTCCA+GGG | - | chr3.1:71262037-71262056 | MS.gene46266:CDS | 35.0% | |
| AGTCCATGATCTACTGAAAA+TGG | - | chr3.1:71263575-71263594 | MS.gene46266:intron | 35.0% | |
| AGTCTGAAGGAGTAATAAGA+AGG | - | chr3.1:71262027-71262046 | MS.gene46266:CDS | 35.0% | |
| ATACATATCGAGGAGAGAAA+AGG | + | chr3.1:71265238-71265257 | None:intergenic | 35.0% | |
| ATGCAAAACCAAGTGGAAAA+AGG | - | chr3.1:71265554-71265573 | MS.gene46266:intron | 35.0% | |
| ATGCAGCCATTACAAATACT+AGG | + | chr3.1:71263849-71263868 | None:intergenic | 35.0% | |
| ATGCATTATGCCTGTGTAAT+CGG | - | chr3.1:71262329-71262348 | MS.gene46266:intron | 35.0% | |
| ATGTGACATGATTTATGTGC+AGG | - | chr3.1:71265301-71265320 | MS.gene46266:intron | 35.0% | |
| ATTACACAGGCATAATGCAT+AGG | + | chr3.1:71262329-71262348 | None:intergenic | 35.0% | |
| CCAAAGAAACAAGAAAACCA+GGG | + | chr3.1:71261599-71261618 | None:intergenic | 35.0% | |
| CGAGAGTCAAATCTAATTTG+AGG | + | chr3.1:71263050-71263069 | None:intergenic | 35.0% | |
| CGGAATGTGATATACTTTAG+GGG | + | chr3.1:71261788-71261807 | None:intergenic | 35.0% | |
| CTATCTTAGCATACATATCG+AGG | + | chr3.1:71265248-71265267 | None:intergenic | 35.0% | |
| CTCGATATGTATGCTAAGAT+AGG | - | chr3.1:71265246-71265265 | MS.gene46266:intron | 35.0% | |
| CTTGATATTGAGGTCAAATG+CGG | - | chr3.1:71263414-71263433 | MS.gene46266:intron | 35.0% | |
| GAATAGTATGTTGAGAGCAA+AGG | + | chr3.1:71262789-71262808 | None:intergenic | 35.0% | |
| GACGGAATGTGATATACTTT+AGG | + | chr3.1:71261790-71261809 | None:intergenic | 35.0% | |
| GATAGACACAAAAATCTGGA+TGG | - | chr3.1:71261550-71261569 | MS.gene46266:CDS | 35.0% | |
| GCAATATAAACTGCCATTAG+AGG | + | chr3.1:71265464-71265483 | None:intergenic | 35.0% | |
| GCATGTGAGATATAATTTGG+TGG | + | chr3.1:71264663-71264682 | None:intergenic | 35.0% | |
| TACAGTAATGCAAAACCAAG+TGG | - | chr3.1:71265547-71265566 | MS.gene46266:intron | 35.0% | |
| TGAACGATGAGAAGAAAATG+TGG | - | chr3.1:71263637-71263656 | MS.gene46266:intron | 35.0% | |
| TGTTGCAATGATTTCTGTGT+CGG | - | chr3.1:71264463-71264482 | MS.gene46266:CDS | 35.0% | |
| TTACACAGGCATAATGCATA+GGG | + | chr3.1:71262328-71262347 | None:intergenic | 35.0% | |
| TTAGATCAAACCGATTACAC+AGG | + | chr3.1:71262342-71262361 | None:intergenic | 35.0% | |
| TTCTTCTTTGGACAAAATGC+AGG | - | chr3.1:71264134-71264153 | MS.gene46266:intron | 35.0% | |
| TTGATATTGAGGTCAAATGC+GGG | - | chr3.1:71263415-71263434 | MS.gene46266:intron | 35.0% | |
| TTGCTTATGGTTATTAGCAG+AGG | - | chr3.1:71262585-71262604 | MS.gene46266:CDS | 35.0% | |
| TTGTATTCAGTTGTTGTGGT+TGG | - | chr3.1:71262145-71262164 | MS.gene46266:intron | 35.0% | |
| ! | AAAGATAGTAATAGTGGGAG+TGG | + | chr3.1:71263191-71263210 | None:intergenic | 35.0% |
| ! | AAAGTACCTAATTCTGTGAG+AGG | - | chr3.1:71264196-71264215 | MS.gene46266:CDS | 35.0% |
| ! | AGAAAGTATACGGCATGATA+AGG | + | chr3.1:71263990-71264009 | None:intergenic | 35.0% |
| ! | ATCTCATGGATACTAGGTTT+TGG | - | chr3.1:71265332-71265351 | MS.gene46266:intron | 35.0% |
| ! | ATGCGTCTAAGATTCTTCTT+TGG | - | chr3.1:71264122-71264141 | MS.gene46266:intron | 35.0% |
| ! | CAGTAAGTAACTCTCCTTTT+TGG | - | chr3.1:71261638-71261657 | MS.gene46266:CDS | 35.0% |
| ! | CTTGTTGTATTCAGTTGTTG+TGG | - | chr3.1:71262141-71262160 | MS.gene46266:intron | 35.0% |
| ! | GAAAGTATACGGCATGATAA+GGG | + | chr3.1:71263989-71264008 | None:intergenic | 35.0% |
| ! | GGGCCTTATGAATTCTATTT+AGG | + | chr3.1:71262283-71262302 | None:intergenic | 35.0% |
| ! | TACTTTAGGGGCAAATTTGA+AGG | + | chr3.1:71261776-71261795 | None:intergenic | 35.0% |
| ! | TTGTTGTGGTTGGTACTTAT+TGG | - | chr3.1:71262155-71262174 | MS.gene46266:intron | 35.0% |
| ! | TTTTTCTAAATACTCACCGG+TGG | + | chr3.1:71262231-71262250 | None:intergenic | 35.0% |
| !! | GATTGTTTGGTTGGTGATAT+AGG | - | chr3.1:71264880-71264899 | MS.gene46266:intron | 35.0% |
| !! | TGTTATTTCACAATTCGCAG+TGG | - | chr3.1:71261940-71261959 | MS.gene46266:intron | 35.0% |
| !! | TTACTCCTTCAGACTTGTTA+AGG | + | chr3.1:71262022-71262041 | None:intergenic | 35.0% |
| !!! | AGGAGGAATTTTTTAGAAGC+AGG | + | chr3.1:71262070-71262089 | None:intergenic | 35.0% |
| !!! | GGAGGAATTTTTTAGAAGCA+GGG | + | chr3.1:71262069-71262088 | None:intergenic | 35.0% |
| AAACCGATGCGATGATGATA+AGG | + | chr3.1:71265018-71265037 | None:intergenic | 40.0% | |
| AACATCCTCAAATCATGACG+AGG | - | chr3.1:71261374-71261393 | MS.gene46266:CDS | 40.0% | |
| AACCACCTTAACAAGTCTGA+AGG | - | chr3.1:71262014-71262033 | MS.gene46266:CDS | 40.0% | |
| AACCTTGAGAAGGAAAGAAG+CGG | + | chr3.1:71264558-71264577 | None:intergenic | 40.0% | |
| AAGCAGTGCTATGGCATAAA+TGG | + | chr3.1:71264744-71264763 | None:intergenic | 40.0% | |
| AAGGAAAGAAGCGGAGTTAA+GGG | + | chr3.1:71264549-71264568 | None:intergenic | 40.0% | |
| AAGGTGGCAAATGTGTTCAT+TGG | - | chr3.1:71265425-71265444 | MS.gene46266:CDS | 40.0% | |
| AAGTACCTCGTCATGATTTG+AGG | + | chr3.1:71261382-71261401 | None:intergenic | 40.0% | |
| ACATAGTAGTCTACCAAAGG+TGG | - | chr3.1:71265409-71265428 | MS.gene46266:CDS | 40.0% | |
| ACCGATAGGTAAGTAAAGTC+TGG | + | chr3.1:71263074-71263093 | None:intergenic | 40.0% | |
| ACCTATCTGCTATATTGTGC+AGG | - | chr3.1:71264379-71264398 | MS.gene46266:intron | 40.0% | |
| ACCTCAATATCAAGGATCGT+GGG | + | chr3.1:71263408-71263427 | None:intergenic | 40.0% | |
| ACTTACTGTTTCCAGGATCA+AGG | + | chr3.1:71261626-71261645 | None:intergenic | 40.0% | |
| AGAAAACCAGGGCCTATATA+TGG | + | chr3.1:71261588-71261607 | None:intergenic | 40.0% | |
| AGACTTTACTTACCTATCGG+TGG | - | chr3.1:71263073-71263092 | MS.gene46266:CDS | 40.0% | |
| AGGCCATGATATCTCATTGA+GGG | + | chr3.1:71263503-71263522 | None:intergenic | 40.0% | |
| AGGTGGCAAATGTGTTCATT+GGG | - | chr3.1:71265426-71265445 | MS.gene46266:CDS | 40.0% | |
| ATGAACACATTTGCCACCTT+TGG | + | chr3.1:71265425-71265444 | None:intergenic | 40.0% | |
| ATGTAGACATTGGTAGATCG+TGG | - | chr3.1:71264323-71264342 | MS.gene46266:intron | 40.0% | |
| ATGTGTTTGTGCTTATTGGC+TGG | - | chr3.1:71261912-71261931 | MS.gene46266:intron | 40.0% | |
| ATTGTCTCCAGATAGGTCAT+TGG | + | chr3.1:71264504-71264523 | None:intergenic | 40.0% | |
| CCAAGTGGAAAAAGGAATTG+TGG | - | chr3.1:71265562-71265581 | MS.gene46266:intron | 40.0% | |
| CGCATTTGACCTCAATATCA+AGG | + | chr3.1:71263416-71263435 | None:intergenic | 40.0% | |
| CGCGCTTATAATTCAGTCAT+TGG | - | chr3.1:71262187-71262206 | MS.gene46266:intron | 40.0% | |
| CTTCCTCACCTGTACAAAAA+AGG | + | chr3.1:71263806-71263825 | None:intergenic | 40.0% | |
| GAAGAGAGAGTGATACTTTG+TGG | + | chr3.1:71261701-71261720 | None:intergenic | 40.0% | |
| GAAGGTAAGGTAGATAACTG+AGG | + | chr3.1:71265486-71265505 | None:intergenic | 40.0% | |
| GAGAGTTACTTACTGTTTCC+AGG | + | chr3.1:71261633-71261652 | None:intergenic | 40.0% | |
| GAGTAATAAGAAGGAAGTCC+AGG | - | chr3.1:71262036-71262055 | MS.gene46266:CDS | 40.0% | |
| GCCAAAGAAACAAGAAAACC+AGG | + | chr3.1:71261600-71261619 | None:intergenic | 40.0% | |
| GTTCAACATTGTCTCCAGAT+AGG | + | chr3.1:71264511-71264530 | None:intergenic | 40.0% | |
| GTTGCAATGATTTCTGTGTC+GGG | - | chr3.1:71264464-71264483 | MS.gene46266:CDS | 40.0% | |
| TCCTGACAAGGGAGAAAATA+CGG | + | chr3.1:71263321-71263340 | None:intergenic | 40.0% | |
| TCCTGCACAATATAGCAGAT+AGG | + | chr3.1:71264383-71264402 | None:intergenic | 40.0% | |
| TGCAGGTCATTACAATCTCA+TGG | - | chr3.1:71265318-71265337 | MS.gene46266:intron | 40.0% | |
| TGTAGACATTGGTAGATCGT+GGG | - | chr3.1:71264324-71264343 | MS.gene46266:intron | 40.0% | |
| TTGATGCCTCTCACAGAATT+AGG | + | chr3.1:71264205-71264224 | None:intergenic | 40.0% | |
| ! | AAATCGACTCCTCTAGTTCA+CGG | - | chr3.1:71263162-71263181 | MS.gene46266:CDS | 40.0% |
| ! | ATTCTTGTGAGGTCCCATTT+TGG | + | chr3.1:71265197-71265216 | None:intergenic | 40.0% |
| ! | CCACAATTCCTTTTTCCACT+TGG | + | chr3.1:71265565-71265584 | None:intergenic | 40.0% |
| ! | CGTCCATTTTCAGTAGATCA+TGG | + | chr3.1:71263581-71263600 | None:intergenic | 40.0% |
| ! | CTCAACAGTGTCTTTTCTGA+AGG | + | chr3.1:71265504-71265523 | None:intergenic | 40.0% |
| ! | TTGGTGGTTACTGCTTAGTT+AGG | + | chr3.1:71264647-71264666 | None:intergenic | 40.0% |
| ! | TTGTGCTGCTGCTAAACTTA+AGG | + | chr3.1:71265174-71265193 | None:intergenic | 40.0% |
| ! | TTTTGTACAGGTGAGGAAGT+TGG | - | chr3.1:71263807-71263826 | MS.gene46266:intron | 40.0% |
| ! | TTTTTGCCATATATAGGCCC+TGG | - | chr3.1:71261579-71261598 | MS.gene46266:CDS | 40.0% |
| !! | ATTGTTTTACCTCGTATCCG+TGG | + | chr3.1:71261991-71262010 | None:intergenic | 40.0% |
| !! | CAGTGTCTTTTCTGAAGGTA+AGG | + | chr3.1:71265499-71265518 | None:intergenic | 40.0% |
| !! | CCCTGGTTTTCTTGTTTCTT+TGG | - | chr3.1:71261596-71261615 | MS.gene46266:CDS | 40.0% |
| !! | TTTTGAGTCTGCAGAGGTTT+GGG | - | chr3.1:71262861-71262880 | MS.gene46266:intron | 40.0% |
| !!! | GTACCTTTTTTGTACAGGTG+AGG | - | chr3.1:71263800-71263819 | MS.gene46266:intron | 40.0% |
| AACAGAACTCCTGCCCATAA+TGG | + | chr3.1:71262818-71262837 | None:intergenic | 45.0% | |
| AACAGCAAGACTAGGTGCTA+TGG | + | chr3.1:71264963-71264982 | None:intergenic | 45.0% | |
| AAGCGAATCCACTCTCATAG+AGG | + | chr3.1:71264421-71264440 | None:intergenic | 45.0% | |
| ACAGAACTCCTGCCCATAAT+GGG | + | chr3.1:71262817-71262836 | None:intergenic | 45.0% | |
| ACCATCACAGGAACTTATGC+AGG | - | chr3.1:71264782-71264801 | MS.gene46266:intron | 45.0% | |
| ACTTCACAAAGGCAGTACTG+AGG | + | chr3.1:71265382-71265401 | None:intergenic | 45.0% | |
| AGCAGCAGCACAACCAAAAT+GGG | - | chr3.1:71265181-71265200 | MS.gene46266:intron | 45.0% | |
| AGCTCACTTGGTTGAGCTAA+GGG | + | chr3.1:71263374-71263393 | None:intergenic | 45.0% | |
| AGGAGTGGAATTAAGGCGAA+TGG | + | chr3.1:71265154-71265173 | None:intergenic | 45.0% | |
| ATAGCAGCTGACATACCTGA+AGG | - | chr3.1:71262616-71262635 | MS.gene46266:intron | 45.0% | |
| ATCTTAACCCTCCGGTTCTT+AGG | + | chr3.1:71263133-71263152 | None:intergenic | 45.0% | |
| ATGATGGCAACAGCAAGACT+AGG | + | chr3.1:71264971-71264990 | None:intergenic | 45.0% | |
| CCAGCTTCTGGTGTACTTAA+GGG | - | chr3.1:71263901-71263920 | MS.gene46266:intron | 45.0% | |
| CCTCAATATCAAGGATCGTG+GGG | + | chr3.1:71263407-71263426 | None:intergenic | 45.0% | |
| CCTTAAGTACACCAGAAGCT+GGG | + | chr3.1:71263903-71263922 | None:intergenic | 45.0% | |
| CTCAATATCAAGGATCGTGG+GGG | + | chr3.1:71263406-71263425 | None:intergenic | 45.0% | |
| CTGCTGCTAAACTTAAGGAG+TGG | + | chr3.1:71265169-71265188 | None:intergenic | 45.0% | |
| CTTAAGTACACCAGAAGCTG+GGG | + | chr3.1:71263902-71263921 | None:intergenic | 45.0% | |
| GAAGGAAAGAAGCGGAGTTA+AGG | + | chr3.1:71264550-71264569 | None:intergenic | 45.0% | |
| GACCTCAATATCAAGGATCG+TGG | + | chr3.1:71263409-71263428 | None:intergenic | 45.0% | |
| GAGGCCATGATATCTCATTG+AGG | + | chr3.1:71263504-71263523 | None:intergenic | 45.0% | |
| GATGGTAGAACTTTGTCCTG+AGG | + | chr3.1:71264768-71264787 | None:intergenic | 45.0% | |
| GGACAAAGTTCTACCATCAC+AGG | - | chr3.1:71264770-71264789 | MS.gene46266:intron | 45.0% | |
| GGCCATGATATCTCATTGAG+GGG | + | chr3.1:71263502-71263521 | None:intergenic | 45.0% | |
| GTAGACATTGGTAGATCGTG+GGG | - | chr3.1:71264325-71264344 | MS.gene46266:intron | 45.0% | |
| TAGATAGCACAAGAGCAGAG+TGG | + | chr3.1:71264174-71264193 | None:intergenic | 45.0% | |
| TAGCAGCAGCACAACCAAAA+TGG | - | chr3.1:71265180-71265199 | MS.gene46266:intron | 45.0% | |
| TAGCTCACTTGGTTGAGCTA+AGG | + | chr3.1:71263375-71263394 | None:intergenic | 45.0% | |
| TATGTAAATCCCCCAGCTTC+TGG | - | chr3.1:71263889-71263908 | MS.gene46266:intron | 45.0% | |
| TCAGTACTGCCTTTGTGAAG+TGG | - | chr3.1:71265381-71265400 | MS.gene46266:intron | 45.0% | |
| TCCTAGTAAGTTGTCATCCG+CGG | + | chr3.1:71263101-71263120 | None:intergenic | 45.0% | |
| TCCTGCATAAGTTCCTGTGA+TGG | + | chr3.1:71264786-71264805 | None:intergenic | 45.0% | |
| TCGCCTTATCATCATCGCAT+CGG | - | chr3.1:71265012-71265031 | MS.gene46266:intron | 45.0% | |
| TCTTAACCCTCCGGTTCTTA+GGG | + | chr3.1:71263132-71263151 | None:intergenic | 45.0% | |
| TGCCCCTCAATGAGATATCA+TGG | - | chr3.1:71263497-71263516 | MS.gene46266:intron | 45.0% | |
| TGTGACCTAAAACGCAGTCA+CGG | - | chr3.1:71263441-71263460 | MS.gene46266:intron | 45.0% | |
| TTAAGTACACCAGAAGCTGG+GGG | + | chr3.1:71263901-71263920 | None:intergenic | 45.0% | |
| TTCAACATCCCATTATGGGC+AGG | - | chr3.1:71262806-71262825 | MS.gene46266:CDS | 45.0% | |
| TTTGAGTCTGCAGAGGTTTG+GGG | - | chr3.1:71262862-71262881 | MS.gene46266:intron | 45.0% | |
| ! | CAGTCATTGGCTGCAAATCT+TGG | - | chr3.1:71262200-71262219 | MS.gene46266:intron | 45.0% |
| ! | TCCGTATTTTCTCCCTTGTC+AGG | - | chr3.1:71263317-71263336 | MS.gene46266:intron | 45.0% |
| ! | TCTTTGGCTTACCTTGATCC+TGG | - | chr3.1:71261612-71261631 | MS.gene46266:CDS | 45.0% |
| !! | AGTCTTGCTGTTGCCATCAT+TGG | - | chr3.1:71264971-71264990 | MS.gene46266:intron | 45.0% |
| !! | CTCCTTCAGACTTGTTAAGG+TGG | + | chr3.1:71262019-71262038 | None:intergenic | 45.0% |
| !! | CTTTTGAGTCTGCAGAGGTT+TGG | - | chr3.1:71262860-71262879 | MS.gene46266:intron | 45.0% |
| !! | GAGTGGATTCGCTTTGTTTG+TGG | - | chr3.1:71264427-71264446 | MS.gene46266:CDS | 45.0% |
| !! | GTGGAAACTGATTTGCAAGC+TGG | - | chr3.1:71261959-71261978 | MS.gene46266:intron | 45.0% |
| !! | TCTTGCTTTTGAGTCTGCAG+AGG | - | chr3.1:71262855-71262874 | MS.gene46266:intron | 45.0% |
| !!! | TAACTTTTATTATTTATATT+TGG | - | chr3.1:71262507-71262526 | MS.gene46266:CDS | 5.0% |
| !!! | TATTTATTTTATATAGTTTA+GGG | + | chr3.1:71261732-71261751 | None:intergenic | 5.0% |
| !!! | TTTTATAAAAAAATTAATGA+TGG | + | chr3.1:71264030-71264049 | None:intergenic | 5.0% |
| ACCGCGGATGACAACTTACT+AGG | - | chr3.1:71263097-71263116 | MS.gene46266:CDS | 50.0% | |
| ATAGCACAAGAGCAGAGTGG+AGG | + | chr3.1:71264171-71264190 | None:intergenic | 50.0% | |
| ATATCAAGGATCGTGGGGGT+TGG | + | chr3.1:71263402-71263421 | None:intergenic | 50.0% | |
| ATGTTTGTGCCCAAACTGGC+TGG | - | chr3.1:71263925-71263944 | MS.gene46266:intron | 50.0% | |
| CAGGGTTCGAATCCTGACAA+GGG | + | chr3.1:71263332-71263351 | None:intergenic | 50.0% | |
| CATGATAAGGGCCCCCAAAA+GGG | + | chr3.1:71263977-71263996 | None:intergenic | 50.0% | |
| CCCAGCTTCTGGTGTACTTA+AGG | - | chr3.1:71263900-71263919 | MS.gene46266:intron | 50.0% | |
| CCCCAAAAGGGCAATAGCAT+CGG | + | chr3.1:71263965-71263984 | None:intergenic | 50.0% | |
| CCCCACGATCCTTGATATTG+AGG | - | chr3.1:71263404-71263423 | MS.gene46266:intron | 50.0% | |
| CCCTTAAGTACACCAGAAGC+TGG | + | chr3.1:71263904-71263923 | None:intergenic | 50.0% | |
| CTCCGCTTCTTTCCTTCTCA+AGG | - | chr3.1:71264553-71264572 | MS.gene46266:intron | 50.0% | |
| CTCCGGTTCTTAGGGGAAAA+GGG | + | chr3.1:71263124-71263143 | None:intergenic | 50.0% | |
| CTTAACCCTCCGGTTCTTAG+GGG | + | chr3.1:71263131-71263150 | None:intergenic | 50.0% | |
| GCAAATCTTGGCGTAACCAC+CGG | - | chr3.1:71262212-71262231 | MS.gene46266:CDS | 50.0% | |
| GCCAGAAGAACCACCAATGA+TGG | + | chr3.1:71264987-71265006 | None:intergenic | 50.0% | |
| GGCATCAATGTAAGCCACTC+AGG | - | chr3.1:71264217-71264236 | MS.gene46266:CDS | 50.0% | |
| GGGAATGTTTGTGCCCAAAC+TGG | - | chr3.1:71263921-71263940 | MS.gene46266:intron | 50.0% | |
| GTGACCTAAAACGCAGTCAC+GGG | - | chr3.1:71263442-71263461 | MS.gene46266:intron | 50.0% | |
| TATCAAGGATCGTGGGGGTT+GGG | + | chr3.1:71263401-71263420 | None:intergenic | 50.0% | |
| TGCAGGACAGTACATCATGC+AGG | - | chr3.1:71264799-71264818 | MS.gene46266:CDS | 50.0% | |
| TGCTCTGCCAATGACCTATC+TGG | - | chr3.1:71264494-71264513 | MS.gene46266:intron | 50.0% | |
| TTGCAAGCTGGAGCTAACCA+CGG | - | chr3.1:71261971-71261990 | MS.gene46266:intron | 50.0% | |
| ! | AGCCGATGCTATTGCCCTTT+TGG | - | chr3.1:71263960-71263979 | MS.gene46266:intron | 50.0% |
| ! | CATTGAGGGGCATACAAGCA+AGG | + | chr3.1:71263489-71263508 | None:intergenic | 50.0% |
| ! | CCGATGCTATTGCCCTTTTG+GGG | - | chr3.1:71263962-71263981 | MS.gene46266:intron | 50.0% |
| ! | CGATGCTATTGCCCTTTTGG+GGG | - | chr3.1:71263963-71263982 | MS.gene46266:intron | 50.0% |
| ! | CTTTTCCCCTAAGAACCGGA+GGG | - | chr3.1:71263123-71263142 | MS.gene46266:CDS | 50.0% |
| ! | GACCCTTTTCCCCTAAGAAC+CGG | - | chr3.1:71263119-71263138 | MS.gene46266:CDS | 50.0% |
| ! | GCCATCATTGGTGGTTCTTC+TGG | - | chr3.1:71264983-71265002 | MS.gene46266:intron | 50.0% |
| ! | GCCGATGCTATTGCCCTTTT+GGG | - | chr3.1:71263961-71263980 | MS.gene46266:intron | 50.0% |
| !! | AAGGGCAATAGCATCGGCTA+CGG | + | chr3.1:71263959-71263978 | None:intergenic | 50.0% |
| !! | CTTGCTGTTGCCATCATTGG+TGG | - | chr3.1:71264974-71264993 | MS.gene46266:intron | 50.0% |
| !!! | GCGTGCTGAGTTTTGAACAG+TGG | - | chr3.1:71263242-71263261 | MS.gene46266:intron | 50.0% |
| ATCAAGGATCGTGGGGGTTG+GGG | + | chr3.1:71263400-71263419 | None:intergenic | 55.0% | |
| CCAGGGTTCGAATCCTGACA+AGG | + | chr3.1:71263333-71263352 | None:intergenic | 55.0% | |
| CCTCCGGTTCTTAGGGGAAA+AGG | + | chr3.1:71263125-71263144 | None:intergenic | 55.0% | |
| CCTTGTCAGGATTCGAACCC+TGG | - | chr3.1:71263330-71263349 | MS.gene46266:intron | 55.0% | |
| CTTACCTATCGGTGGAACCG+CGG | - | chr3.1:71263081-71263100 | MS.gene46266:CDS | 55.0% | |
| GAGTGGTAGCCGTGAACTAG+AGG | + | chr3.1:71263174-71263193 | None:intergenic | 55.0% | |
| GCAGCTGACATACCTGAAGG+TGG | - | chr3.1:71262619-71262638 | MS.gene46266:intron | 55.0% | |
| GCATGATAAGGGCCCCCAAA+AGG | + | chr3.1:71263978-71263997 | None:intergenic | 55.0% | |
| GCTCCTTCACCAGCCAGTTT+GGG | + | chr3.1:71263937-71263956 | None:intergenic | 55.0% | |
| TAGAAGCAGGGCTAGAACCC+TGG | + | chr3.1:71262057-71262076 | None:intergenic | 55.0% | |
| TCCTGAGGCAAGCAGTGCTA+TGG | + | chr3.1:71264753-71264772 | None:intergenic | 55.0% | |
| TGGAGCTAACCACGGATACG+AGG | - | chr3.1:71261979-71261998 | MS.gene46266:intron | 55.0% | |
| TGGGCAGGAGTTCTGTTGAC+TGG | - | chr3.1:71262821-71262840 | MS.gene46266:CDS | 55.0% | |
| ! | ATCGCCCGTGACTGCGTTTT+AGG | + | chr3.1:71263449-71263468 | None:intergenic | 55.0% |
| ! | CCTTTTCCCCTAAGAACCGG+AGG | - | chr3.1:71263122-71263141 | MS.gene46266:CDS | 55.0% |
| GCCATAGCACTGCTTGCCTC+AGG | - | chr3.1:71264749-71264768 | MS.gene46266:intron | 60.0% | |
| GGCTCCTTCACCAGCCAGTT+TGG | + | chr3.1:71263938-71263957 | None:intergenic | 60.0% | |
| GTGCCCAAACTGGCTGGTGA+AGG | - | chr3.1:71263931-71263950 | MS.gene46266:intron | 60.0% | |
| TCAAGGATCGTGGGGGTTGG+GGG | + | chr3.1:71263399-71263418 | None:intergenic | 60.0% | |
| TCATCCGCGGTTCCACCGAT+AGG | + | chr3.1:71263088-71263107 | None:intergenic | 60.0% | |
| CAAGGATCGTGGGGGTTGGG+GGG | + | chr3.1:71263398-71263417 | None:intergenic | 65.0% | |
| GGGTTGGGGGGTAGCTCACT+TGG | + | chr3.1:71263386-71263405 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 71261369 | 71265655 | 71261369 | ID=MS.gene46266 |
| chr3.1 | mRNA | 71261369 | 71265655 | 71261369 | ID=MS.gene46266.t1;Parent=MS.gene46266 |
| chr3.1 | exon | 71265629 | 71265655 | 71265629 | ID=MS.gene46266.t1.exon1;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71265629 | 71265655 | 71265629 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71265385 | 71265469 | 71265385 | ID=MS.gene46266.t1.exon2;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71265385 | 71265469 | 71265385 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71265024 | 71265064 | 71265024 | ID=MS.gene46266.t1.exon3;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71265024 | 71265064 | 71265024 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71264791 | 71264869 | 71264791 | ID=MS.gene46266.t1.exon4;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71264791 | 71264869 | 71264791 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71264387 | 71264491 | 71264387 | ID=MS.gene46266.t1.exon5;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71264387 | 71264491 | 71264387 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71264141 | 71264250 | 71264141 | ID=MS.gene46266.t1.exon6;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71264141 | 71264250 | 71264141 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71263026 | 71263207 | 71263026 | ID=MS.gene46266.t1.exon7;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71263026 | 71263207 | 71263026 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71262799 | 71262868 | 71262799 | ID=MS.gene46266.t1.exon8;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71262799 | 71262868 | 71262799 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71262450 | 71262623 | 71262450 | ID=MS.gene46266.t1.exon9;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71262450 | 71262623 | 71262450 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71262204 | 71262308 | 71262204 | ID=MS.gene46266.t1.exon10;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71262204 | 71262308 | 71262204 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71261991 | 71262122 | 71261991 | ID=MS.gene46266.t1.exon11;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71261991 | 71262122 | 71261991 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71261799 | 71261894 | 71261799 | ID=MS.gene46266.t1.exon12;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71261799 | 71261894 | 71261799 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| chr3.1 | exon | 71261369 | 71261701 | 71261369 | ID=MS.gene46266.t1.exon13;Parent=MS.gene46266.t1 |
| chr3.1 | CDS | 71261369 | 71261701 | 71261369 | ID=cds.MS.gene46266.t1;Parent=MS.gene46266.t1 |
| Gene Sequence |
| Protein sequence |
