Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48517.t1 | XP_003598266.2 | 96.3 | 297 | 11 | 0 | 1 | 297 | 41 | 337 | 1.50E-157 | 565.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48517.t1 | Q8N5I4 | 33.5 | 230 | 132 | 7 | 37 | 261 | 38 | 251 | 2.2e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48517.t1 | G7J0B2 | 96.3 | 297 | 11 | 0 | 1 | 297 | 41 | 337 | 1.1e-157 | 565.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05158 | MS.gene48517 | PPI |
| MS.gene48517 | MS.gene035607 | PPI |
| MS.gene048973 | MS.gene48517 | PPI |
| MS.gene006263 | MS.gene48517 | PPI |
| MS.gene48517 | MS.gene34137 | PPI |
| MS.gene48517 | MS.gene012538 | PPI |
| MS.gene48517 | MS.gene49121 | PPI |
| MS.gene48517 | MS.gene49120 | PPI |
| MS.gene48517 | MS.gene34138 | PPI |
| MS.gene48517 | MS.gene061893 | PPI |
| MS.gene48517 | MS.gene34141 | PPI |
| MS.gene48517 | MS.gene06120 | PPI |
| MS.gene48517 | MS.gene42492 | PPI |
| MS.gene48517 | MS.gene49117 | PPI |
| MS.gene48517 | MS.gene061158 | PPI |
| MS.gene061155 | MS.gene48517 | PPI |
| MS.gene48517 | MS.gene40431 | PPI |
| MS.gene48517 | MS.gene006264 | PPI |
| MS.gene48517 | MS.gene061157 | PPI |
| MS.gene48517 | MS.gene95938 | PPI |
| MS.gene48517 | MS.gene20199 | PPI |
| MS.gene48517 | MS.gene55839 | PPI |
| MS.gene48517 | MS.gene037994 | PPI |
| MS.gene48517 | MS.gene34140 | PPI |
| MS.gene48517 | MS.gene24053 | PPI |
| MS.gene48517 | MS.gene006265 | PPI |
| MS.gene48517 | MS.gene49118 | PPI |
| MS.gene48517 | MS.gene061154 | PPI |
| MS.gene48517 | MS.gene57782 | PPI |
| MS.gene48517 | MS.gene058995 | PPI |
| MS.gene48517 | MS.gene006262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48517.t1 | MTR_3g009190 | 96.296 | 297 | 11 | 0 | 1 | 297 | 23 | 319 | 0.0 | 578 |
| MS.gene48517.t1 | MTR_3g009190 | 96.296 | 297 | 11 | 0 | 1 | 297 | 41 | 337 | 0.0 | 577 |
| MS.gene48517.t1 | MTR_6g453040 | 94.613 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 0.0 | 571 |
| MS.gene48517.t1 | MTR_3g091070 | 90.236 | 297 | 11 | 1 | 1 | 297 | 1 | 279 | 0.0 | 536 |
| MS.gene48517.t1 | MTR_3g009190 | 94.531 | 256 | 14 | 0 | 42 | 297 | 63 | 318 | 1.96e-173 | 484 |
| MS.gene48517.t1 | MTR_6g453040 | 90.114 | 263 | 22 | 1 | 1 | 263 | 23 | 281 | 4.43e-170 | 473 |
| MS.gene48517.t1 | MTR_6g453040 | 95.000 | 220 | 11 | 0 | 1 | 220 | 23 | 242 | 2.37e-150 | 421 |
| MS.gene48517.t1 | MTR_3g009200 | 79.006 | 181 | 26 | 3 | 80 | 257 | 2 | 173 | 3.38e-96 | 282 |
| MS.gene48517.t1 | MTR_6g453030 | 88.312 | 77 | 9 | 0 | 70 | 146 | 1 | 77 | 3.85e-43 | 142 |
| MS.gene48517.t1 | MTR_8g099995 | 31.224 | 237 | 148 | 4 | 44 | 276 | 39 | 264 | 2.87e-25 | 103 |
| MS.gene48517.t1 | MTR_3g077410 | 30.418 | 263 | 164 | 7 | 38 | 296 | 35 | 282 | 9.57e-25 | 102 |
| MS.gene48517.t1 | MTR_4g105310 | 30.041 | 243 | 153 | 5 | 38 | 276 | 46 | 275 | 1.09e-24 | 102 |
| MS.gene48517.t1 | MTR_4g105310 | 30.973 | 226 | 139 | 5 | 38 | 259 | 46 | 258 | 4.75e-24 | 98.6 |
| MS.gene48517.t1 | MTR_7g099850 | 29.237 | 236 | 145 | 5 | 43 | 271 | 37 | 257 | 6.15e-21 | 91.3 |
| MS.gene48517.t1 | MTR_8g098415 | 30.952 | 252 | 148 | 7 | 43 | 284 | 32 | 267 | 3.83e-20 | 89.0 |
| MS.gene48517.t1 | MTR_8g098415 | 30.980 | 255 | 144 | 8 | 43 | 284 | 32 | 267 | 4.14e-20 | 89.0 |
| MS.gene48517.t1 | MTR_1g068970 | 28.755 | 233 | 149 | 5 | 43 | 271 | 37 | 256 | 1.66e-19 | 87.4 |
| MS.gene48517.t1 | MTR_6g041980 | 26.027 | 219 | 147 | 6 | 11 | 223 | 38 | 247 | 5.78e-19 | 84.7 |
| MS.gene48517.t1 | MTR_6g041980 | 27.041 | 196 | 129 | 5 | 11 | 201 | 38 | 224 | 6.11e-18 | 83.2 |
| MS.gene48517.t1 | MTR_1g100305 | 29.412 | 255 | 148 | 7 | 43 | 284 | 32 | 267 | 2.09e-17 | 81.3 |
| MS.gene48517.t1 | MTR_1g100395 | 27.381 | 252 | 157 | 6 | 43 | 284 | 32 | 267 | 8.52e-17 | 79.7 |
| MS.gene48517.t1 | MTR_1g100315 | 29.386 | 228 | 138 | 7 | 43 | 263 | 32 | 243 | 2.21e-16 | 78.2 |
| MS.gene48517.t1 | MTR_1g100335 | 29.646 | 226 | 136 | 7 | 43 | 261 | 32 | 241 | 3.79e-16 | 77.0 |
| MS.gene48517.t1 | MTR_1g100335 | 27.778 | 252 | 156 | 8 | 43 | 284 | 32 | 267 | 6.07e-16 | 77.0 |
| MS.gene48517.t1 | MTR_1g100335 | 29.646 | 226 | 136 | 7 | 43 | 261 | 32 | 241 | 6.32e-16 | 76.6 |
| MS.gene48517.t1 | MTR_8g098415 | 30.392 | 204 | 116 | 7 | 91 | 284 | 23 | 210 | 4.58e-15 | 73.9 |
| MS.gene48517.t1 | MTR_6g081020 | 29.545 | 264 | 156 | 11 | 14 | 265 | 34 | 279 | 7.22e-15 | 74.7 |
| MS.gene48517.t1 | MTR_6g053550 | 29.958 | 237 | 132 | 9 | 42 | 265 | 39 | 254 | 7.60e-15 | 73.9 |
| MS.gene48517.t1 | MTR_8g098415 | 31.156 | 199 | 116 | 5 | 43 | 234 | 32 | 216 | 1.48e-14 | 71.6 |
| MS.gene48517.t1 | MTR_2g079710 | 30.677 | 251 | 144 | 8 | 31 | 260 | 75 | 316 | 3.82e-14 | 72.4 |
| MS.gene48517.t1 | MTR_6g053600 | 28.854 | 253 | 141 | 10 | 43 | 277 | 26 | 257 | 1.20e-13 | 70.5 |
| MS.gene48517.t1 | MTR_1g068970 | 27.368 | 190 | 121 | 5 | 88 | 273 | 15 | 191 | 2.22e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48517.t1 | AT5G04070 | 57.912 | 297 | 125 | 0 | 1 | 297 | 19 | 315 | 3.87e-110 | 323 |
| MS.gene48517.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 20 | 317 | 2.06e-103 | 305 |
| MS.gene48517.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 19 | 316 | 1.87e-102 | 304 |
| MS.gene48517.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 20 | 317 | 2.18e-102 | 304 |
| MS.gene48517.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 20 | 317 | 2.18e-102 | 304 |
| MS.gene48517.t1 | AT2G37540 | 33.333 | 228 | 135 | 6 | 43 | 266 | 36 | 250 | 1.15e-24 | 100 |
| MS.gene48517.t1 | AT2G37540 | 33.484 | 221 | 130 | 6 | 43 | 259 | 36 | 243 | 3.81e-24 | 100 |
| MS.gene48517.t1 | AT4G24050 | 31.707 | 246 | 137 | 7 | 43 | 276 | 37 | 263 | 3.90e-24 | 99.4 |
| MS.gene48517.t1 | AT4G24050 | 31.837 | 245 | 136 | 7 | 44 | 276 | 38 | 263 | 1.21e-23 | 99.0 |
| MS.gene48517.t1 | AT4G23430 | 31.621 | 253 | 146 | 7 | 43 | 284 | 32 | 268 | 6.11e-23 | 97.1 |
| MS.gene48517.t1 | AT4G23430 | 31.474 | 251 | 147 | 7 | 43 | 284 | 32 | 266 | 1.95e-22 | 95.5 |
| MS.gene48517.t1 | AT5G50130 | 29.412 | 221 | 139 | 5 | 43 | 259 | 39 | 246 | 4.79e-22 | 93.2 |
| MS.gene48517.t1 | AT1G64590 | 30.252 | 238 | 149 | 5 | 44 | 276 | 38 | 263 | 8.39e-22 | 94.0 |
| MS.gene48517.t1 | AT5G50130 | 28.270 | 237 | 153 | 5 | 44 | 276 | 40 | 263 | 1.08e-21 | 93.6 |
| MS.gene48517.t1 | AT4G09750 | 29.231 | 260 | 148 | 9 | 43 | 296 | 46 | 275 | 2.80e-21 | 92.4 |
| MS.gene48517.t1 | AT5G50130 | 27.966 | 236 | 153 | 5 | 45 | 276 | 8 | 230 | 3.93e-21 | 91.7 |
| MS.gene48517.t1 | AT5G50130 | 27.966 | 236 | 153 | 5 | 45 | 276 | 8 | 230 | 4.73e-21 | 91.3 |
| MS.gene48517.t1 | AT5G50130 | 29.279 | 222 | 139 | 6 | 43 | 259 | 39 | 247 | 1.21e-20 | 89.4 |
| MS.gene48517.t1 | AT5G50130 | 28.151 | 238 | 153 | 6 | 44 | 276 | 40 | 264 | 2.04e-20 | 90.1 |
| MS.gene48517.t1 | AT5G50130 | 28.151 | 238 | 153 | 6 | 44 | 276 | 40 | 264 | 2.60e-20 | 89.7 |
| MS.gene48517.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 43 | 257 | 32 | 237 | 4.37e-20 | 87.8 |
| MS.gene48517.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 43 | 257 | 32 | 237 | 6.58e-20 | 87.4 |
| MS.gene48517.t1 | AT5G50130 | 27.848 | 237 | 153 | 6 | 45 | 276 | 8 | 231 | 8.58e-20 | 87.8 |
| MS.gene48517.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 43 | 257 | 32 | 237 | 1.12e-19 | 87.8 |
| MS.gene48517.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 43 | 257 | 32 | 237 | 1.12e-19 | 87.8 |
| MS.gene48517.t1 | AT5G50130 | 27.848 | 237 | 153 | 6 | 45 | 276 | 8 | 231 | 1.25e-19 | 87.0 |
| MS.gene48517.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 43 | 257 | 49 | 254 | 1.26e-19 | 87.8 |
| MS.gene48517.t1 | AT5G02540 | 30.531 | 226 | 140 | 5 | 50 | 271 | 43 | 255 | 8.78e-19 | 85.5 |
| MS.gene48517.t1 | AT4G11410 | 29.412 | 221 | 139 | 5 | 43 | 259 | 32 | 239 | 1.69e-16 | 77.8 |
| MS.gene48517.t1 | AT5G54190 | 30.374 | 214 | 123 | 6 | 40 | 234 | 92 | 298 | 2.25e-16 | 79.3 |
| MS.gene48517.t1 | AT5G53090 | 31.641 | 256 | 145 | 11 | 14 | 262 | 37 | 269 | 2.69e-16 | 79.0 |
| MS.gene48517.t1 | AT4G23430 | 28.916 | 249 | 148 | 7 | 43 | 284 | 32 | 258 | 3.29e-16 | 77.8 |
| MS.gene48517.t1 | AT4G11410 | 29.279 | 222 | 140 | 5 | 42 | 259 | 31 | 239 | 4.66e-16 | 77.4 |
| MS.gene48517.t1 | AT4G23430 | 28.745 | 247 | 149 | 7 | 43 | 284 | 32 | 256 | 8.60e-16 | 76.6 |
| MS.gene48517.t1 | AT4G27760 | 31.890 | 254 | 144 | 12 | 16 | 261 | 37 | 269 | 8.81e-16 | 77.4 |
| MS.gene48517.t1 | AT5G53100 | 32.618 | 233 | 132 | 9 | 39 | 262 | 43 | 259 | 6.34e-15 | 74.7 |
| MS.gene48517.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 42 | 255 | 38 | 273 | 6.71e-15 | 74.3 |
| MS.gene48517.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 42 | 255 | 38 | 273 | 6.71e-15 | 74.3 |
| MS.gene48517.t1 | AT4G27440 | 28.750 | 240 | 143 | 7 | 40 | 260 | 88 | 318 | 7.43e-13 | 68.9 |
| MS.gene48517.t1 | AT4G27440 | 28.750 | 240 | 143 | 7 | 40 | 260 | 88 | 318 | 7.43e-13 | 68.9 |
| MS.gene48517.t1 | AT1G03630 | 28.452 | 239 | 144 | 7 | 40 | 260 | 89 | 318 | 1.74e-12 | 67.8 |
| MS.gene48517.t1 | AT1G03630 | 28.452 | 239 | 144 | 7 | 40 | 260 | 87 | 316 | 1.83e-12 | 67.4 |
| MS.gene48517.t1 | AT5G51030 | 26.295 | 251 | 141 | 11 | 37 | 255 | 34 | 272 | 1.80e-11 | 64.3 |
Find 71 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTACATTAACAATTT+TGG | 0.129013 | 3.1:+73052411 | None:intergenic |
| TTCTCATTACCAATTGTTTA+AGG | 0.132723 | 3.1:-73054097 | MS.gene48517:CDS |
| TTCCCTGCGGCAGTGGCTTT+TGG | 0.188298 | 3.1:-73053041 | MS.gene48517:CDS |
| GAAGGATATGTTGTTGTTAT+TGG | 0.221951 | 3.1:-73053860 | MS.gene48517:intron |
| ATGACGCAAACGGGCTTATT+AGG | 0.256187 | 3.1:+73054018 | None:intergenic |
| CCAACCTTTGATCTTTGTTA+TGG | 0.302323 | 3.1:+73053135 | None:intergenic |
| GTTGATGAGGGAACTGTATC+TGG | 0.316956 | 3.1:-73052209 | MS.gene48517:CDS |
| ATGTAGGCAACTTCTGGCTT+GGG | 0.349440 | 3.1:-73053911 | MS.gene48517:intron |
| ACTGAAGCGCCTACGCCTAT+TGG | 0.350236 | 3.1:-73050856 | MS.gene48517:CDS |
| TACTGCATGCAAGCTTTCTA+AGG | 0.358613 | 3.1:-73053882 | MS.gene48517:CDS |
| AACAAGAGCGGCATCAATAA+TGG | 0.358851 | 3.1:+73050809 | None:intergenic |
| GCCACCCAAGACAGGCTTGC+TGG | 0.372458 | 3.1:+73050888 | None:intergenic |
| TATGTAGGCAACTTCTGGCT+TGG | 0.389201 | 3.1:-73053912 | MS.gene48517:intron |
| AGAAGCTTGGTCATAACAAA+TGG | 0.391340 | 3.1:+73052466 | None:intergenic |
| TGCATCAGTGTTGCAGATCC+TGG | 0.392661 | 3.1:-73050942 | MS.gene48517:intron |
| TACTCATAGATCTGAGCATA+TGG | 0.415666 | 3.1:+73052158 | None:intergenic |
| AGTGCGAATCCTTAAACAAT+TGG | 0.431135 | 3.1:+73054088 | None:intergenic |
| TTCTTCAGTTACTAATATGC+AGG | 0.447497 | 3.1:-73052231 | MS.gene48517:intron |
| ATGATCGGCACAAATTATAT+CGG | 0.464816 | 3.1:-73052490 | MS.gene48517:CDS |
| ACGCCGGTGATGACGCAAAC+GGG | 0.466622 | 3.1:+73054009 | None:intergenic |
| CGCACTCAGAGGATTCCAAT+AGG | 0.477071 | 3.1:+73050841 | None:intergenic |
| AAGTTCCAGCAAGCCTGTCT+TGG | 0.478894 | 3.1:-73050893 | MS.gene48517:CDS |
| CACCGACAGCTTTGCCAGAT+GGG | 0.480702 | 3.1:-73052014 | MS.gene48517:CDS |
| AATCCAAAAGCCACTGCCGC+AGG | 0.480743 | 3.1:+73053038 | None:intergenic |
| TCTTGAGAATGGCGTTGCTA+TGG | 0.482908 | 3.1:-73054137 | None:intergenic |
| ATGTTTGTTTGTACAACTCC+AGG | 0.484002 | 3.1:+73050924 | None:intergenic |
| AACGGGCTTATTAGGATAAG+TGG | 0.486333 | 3.1:+73054026 | None:intergenic |
| AGTTCCAGCAAGCCTGTCTT+GGG | 0.486423 | 3.1:-73050892 | MS.gene48517:CDS |
| TCTGATGAGATTTACCCATC+TGG | 0.490381 | 3.1:+73052000 | None:intergenic |
| ATGAGAAAATGCAACAGAAA+AGG | 0.493406 | 3.1:+73054113 | None:intergenic |
| TACGCCGGTGATGACGCAAA+CGG | 0.502981 | 3.1:+73054008 | None:intergenic |
| TAGCCCTCGGCTGTGACTCT+AGG | 0.508982 | 3.1:+73052956 | None:intergenic |
| ACTCTTTCTCCCAGGATGAT+CGG | 0.513630 | 3.1:-73052505 | MS.gene48517:intron |
| GGATTCCGATTTGCACTGCT+CGG | 0.516338 | 3.1:-73053020 | MS.gene48517:CDS |
| TACTAATATGCAGGTTGATG+AGG | 0.517745 | 3.1:-73052222 | MS.gene48517:CDS |
| CTGTACCGAGCAGTGCAAAT+CGG | 0.519892 | 3.1:+73053015 | None:intergenic |
| CCACCGACAGCTTTGCCAGA+TGG | 0.523592 | 3.1:-73052015 | MS.gene48517:CDS |
| CAAAGAATGCCACCCAAGAC+AGG | 0.524956 | 3.1:+73050880 | None:intergenic |
| CAGCCTGAAAAGCTTTGAGA+TGG | 0.527541 | 3.1:+73053101 | None:intergenic |
| CAGATACTAATAAACAATGC+TGG | 0.527707 | 3.1:-73052995 | MS.gene48517:CDS |
| TCAGTACTTCCCTGCGGCAG+TGG | 0.529421 | 3.1:-73053048 | MS.gene48517:CDS |
| AAGAAGTGGTAATAGAAGCT+TGG | 0.533171 | 3.1:+73052453 | None:intergenic |
| ACAAAATCGTTTCATATCCA+AGG | 0.536777 | 3.1:-73054059 | MS.gene48517:CDS |
| GAAGCTTGGTCATAACAAAT+GGG | 0.550505 | 3.1:+73052467 | None:intergenic |
| TATTGGAATCCTCTGAGTGC+GGG | 0.558043 | 3.1:-73050839 | MS.gene48517:CDS |
| ACAGGACTGCTTTCAAGAAG+TGG | 0.566270 | 3.1:+73052439 | None:intergenic |
| GCATGCAAGCTTTCTAAGGA+AGG | 0.570982 | 3.1:-73053878 | MS.gene48517:CDS |
| ACTAATATGCAGGTTGATGA+GGG | 0.578265 | 3.1:-73052221 | MS.gene48517:CDS |
| TACCCATCTGGCAAAGCTGT+CGG | 0.582388 | 3.1:+73052012 | None:intergenic |
| ATCAGAGCAGTTGTTGTCAG+AGG | 0.583512 | 3.1:-73053248 | MS.gene48517:intron |
| AAGCCCGTTTGCGTCATCAC+CGG | 0.588542 | 3.1:-73054012 | MS.gene48517:CDS |
| AAAGATCAAAGGTTGGAATG+AGG | 0.601841 | 3.1:-73053128 | MS.gene48517:CDS |
| ATCCAAAAGCCACTGCCGCA+GGG | 0.603195 | 3.1:+73053039 | None:intergenic |
| ACATCATTTACTCACCGAGC+TGG | 0.604721 | 3.1:-73052394 | MS.gene48517:intron |
| TCCAGCAAGCCTGTCTTGGG+TGG | 0.609392 | 3.1:-73050889 | MS.gene48517:CDS |
| TGATTACTGATCGTAGCCCT+CGG | 0.612315 | 3.1:+73052943 | None:intergenic |
| CAGAGGATTCCAATAGGCGT+AGG | 0.613100 | 3.1:+73050847 | None:intergenic |
| ATCTCCTAGAGTCACAGCCG+AGG | 0.615116 | 3.1:-73052960 | MS.gene48517:CDS |
| CCATAACAAAGATCAAAGGT+TGG | 0.615580 | 3.1:-73053135 | MS.gene48517:CDS |
| AGCCTGAAAAGCTTTGAGAT+GGG | 0.618219 | 3.1:+73053102 | None:intergenic |
| CCATCTGGCAAAGCTGTCGG+TGG | 0.618971 | 3.1:+73052015 | None:intergenic |
| TAGACCATAACAAAGATCAA+AGG | 0.629385 | 3.1:-73053139 | MS.gene48517:CDS |
| TAATTGACTGAACTGACGAA+AGG | 0.629390 | 3.1:+73053077 | None:intergenic |
| CTATTGGAATCCTCTGAGTG+CGG | 0.632369 | 3.1:-73050840 | MS.gene48517:CDS |
| AAATGATTATCCTACCAGCT+CGG | 0.644742 | 3.1:+73052380 | None:intergenic |
| TAAGTGGAAGGTGAAGACCT+TGG | 0.645367 | 3.1:+73054042 | None:intergenic |
| ACTCACAGGCGGAACAAGAG+CGG | 0.651280 | 3.1:+73050797 | None:intergenic |
| TCTCCTAGAGTCACAGCCGA+GGG | 0.656798 | 3.1:-73052959 | MS.gene48517:CDS |
| GGAATCATTCCCGCACTCAG+AGG | 0.664247 | 3.1:+73050830 | None:intergenic |
| GGCTTATTAGGATAAGTGGA+AGG | 0.667420 | 3.1:+73054030 | None:intergenic |
| TAAAGTTCAGTACTTCCCTG+CGG | 0.748172 | 3.1:-73053054 | MS.gene48517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCTATATTTATAAA+AGG | + | chr3.1:73053321-73053340 | None:intergenic | 10.0% |
| !! | AATAACCTATATTTATAAAA+GGG | + | chr3.1:73053320-73053339 | None:intergenic | 10.0% |
| !! | ATAAAACTTTATTATATTTC+TGG | - | chr3.1:73053915-73053934 | MS.gene48517:intron | 10.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | - | chr3.1:73053276-73053295 | MS.gene48517:intron | 15.0% |
| !! | ATAAAAGGAATTAAAACATA+AGG | + | chr3.1:73051145-73051164 | None:intergenic | 15.0% |
| !! | ATAATATAAATCAAAAAGTG+AGG | + | chr3.1:73052582-73052601 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | - | chr3.1:73053277-73053296 | MS.gene48517:intron | 15.0% |
| !! | TATATTAATTATTAGCATCA+TGG | - | chr3.1:73051715-73051734 | MS.gene48517:intron | 15.0% |
| !!! | ATGCTAATGAAAAATTTTAT+AGG | - | chr3.1:73053216-73053235 | MS.gene48517:intron | 15.0% |
| !!! | ATTAACCCTTTTATAAATAT+AGG | - | chr3.1:73053312-73053331 | MS.gene48517:intron | 15.0% |
| !!! | TGCTAATGAAAAATTTTATA+GGG | - | chr3.1:73053217-73053236 | MS.gene48517:intron | 15.0% |
| !! | AACATGAATAAAAATCATAC+GGG | - | chr3.1:73053837-73053856 | MS.gene48517:intron | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr3.1:73053059-73053078 | None:intergenic | 20.0% |
| !! | ATAAATAAATTATGCACATC+AGG | + | chr3.1:73052150-73052169 | None:intergenic | 20.0% |
| !! | ATCACAGTAATACATTAATT+AGG | + | chr3.1:73053360-73053379 | None:intergenic | 20.0% |
| !! | ATTAAGATATTTACGATGAA+TGG | + | chr3.1:73051752-73051771 | None:intergenic | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr3.1:73053058-73053077 | None:intergenic | 20.0% |
| !! | CAGAAAATGAATATTAAAAG+TGG | + | chr3.1:73053962-73053981 | None:intergenic | 20.0% |
| !! | CATAATTTATTTATGCTTTG+GGG | - | chr3.1:73052156-73052175 | MS.gene48517:CDS | 20.0% |
| !! | GAACATGAATAAAAATCATA+CGG | - | chr3.1:73053836-73053855 | MS.gene48517:intron | 20.0% |
| !! | GCATAATTTATTTATGCTTT+GGG | - | chr3.1:73052155-73052174 | MS.gene48517:CDS | 20.0% |
| !! | TGCATAATTTATTTATGCTT+TGG | - | chr3.1:73052154-73052173 | MS.gene48517:CDS | 20.0% |
| !!! | AAAAAATTCACCAACATTTT+TGG | + | chr3.1:73053150-73053169 | None:intergenic | 20.0% |
| !!! | AAAGGAAATAAAAGTTGATT+TGG | + | chr3.1:73052977-73052996 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr3.1:73053090-73053109 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr3.1:73053089-73053108 | None:intergenic | 20.0% |
| !!! | ACATTTTCCTTAAGTATTTT+AGG | - | chr3.1:73053122-73053141 | MS.gene48517:CDS | 20.0% |
| !!! | CATTTTCCTTAAGTATTTTA+GGG | - | chr3.1:73053123-73053142 | MS.gene48517:CDS | 20.0% |
| !!! | CCATAATTTGATCAATTTTA+CGG | + | chr3.1:73051246-73051265 | None:intergenic | 20.0% |
| !!! | GAAAATCAATAAGTGTTTTA+TGG | + | chr3.1:73052641-73052660 | None:intergenic | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | + | chr3.1:73052524-73052543 | None:intergenic | 20.0% |
| !!! | TTCTATGATTTTTTCTATGT+AGG | - | chr3.1:73051005-73051024 | MS.gene48517:intron | 20.0% |
| ! | AACAAAAATACATGCTAGTT+AGG | + | chr3.1:73052865-73052884 | None:intergenic | 25.0% |
| ! | ATTGACATAATCACAAGATT+TGG | + | chr3.1:73051318-73051337 | None:intergenic | 25.0% |
| ! | CAAAATTCTATCTTTATCGT+TGG | - | chr3.1:73052049-73052068 | MS.gene48517:intron | 25.0% |
| ! | CCGTAAAATTGATCAAATTA+TGG | - | chr3.1:73051243-73051262 | MS.gene48517:intron | 25.0% |
| ! | GATAAATAACATTGCATCAA+AGG | + | chr3.1:73052326-73052345 | None:intergenic | 25.0% |
| ! | GTGAATTGTTAGCATATAAA+AGG | + | chr3.1:73051160-73051179 | None:intergenic | 25.0% |
| ! | TCTACTTTGTCAAATTTCTA+CGG | - | chr3.1:73051469-73051488 | MS.gene48517:intron | 25.0% |
| ! | TTAATGAAATTTGCAAGAGA+AGG | + | chr3.1:73050964-73050983 | None:intergenic | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | + | chr3.1:73053014-73053033 | None:intergenic | 25.0% |
| ! | TTCTCATTACCAATTGTTTA+AGG | - | chr3.1:73050835-73050854 | MS.gene48517:CDS | 25.0% |
| !! | AAAGCTTAAAACATTTTGCA+AGG | + | chr3.1:73053891-73053910 | None:intergenic | 25.0% |
| !! | AATAATTTGTAGGAAAGTCA+TGG | + | chr3.1:73053416-73053435 | None:intergenic | 25.0% |
| !! | AGAGCTTTATATAATCACAA+TGG | + | chr3.1:73051271-73051290 | None:intergenic | 25.0% |
| !! | GCTGATGGAAAATTTTTATA+GGG | - | chr3.1:73053186-73053205 | MS.gene48517:intron | 25.0% |
| !! | TCTTTTGAACACACTATTAT+TGG | + | chr3.1:73051589-73051608 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAATTTTTAT+AGG | - | chr3.1:73053185-73053204 | MS.gene48517:intron | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | - | chr3.1:73053245-73053264 | MS.gene48517:intron | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | - | chr3.1:73053246-73053265 | MS.gene48517:intron | 25.0% |
| !!! | AGTGTTGTGTGTTTTTATAA+AGG | - | chr3.1:73053014-73053033 | MS.gene48517:CDS | 25.0% |
| !!! | AGTTCTGAACTTTCAATTAA+AGG | - | chr3.1:73053552-73053571 | MS.gene48517:intron | 25.0% |
| !!! | ATATTTCTGGTTAATAACCA+TGG | - | chr3.1:73053928-73053947 | MS.gene48517:intron | 25.0% |
| !!! | CTTATTGATTTTCTCTACAA+TGG | - | chr3.1:73052648-73052667 | MS.gene48517:intron | 25.0% |
| !!! | GTGTTGTGTGTTTTTATAAA+GGG | - | chr3.1:73053015-73053034 | MS.gene48517:CDS | 25.0% |
| !!! | GTTGGTGAATTTTTTTTACA+GGG | - | chr3.1:73053155-73053174 | MS.gene48517:intron | 25.0% |
| !!! | TATTTCTGGTTAATAACCAT+GGG | - | chr3.1:73053929-73053948 | MS.gene48517:intron | 25.0% |
| !!! | TGTTGGTGAATTTTTTTTAC+AGG | - | chr3.1:73053154-73053173 | MS.gene48517:intron | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | - | chr3.1:73052198-73052217 | MS.gene48517:CDS | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | + | chr3.1:73052514-73052533 | None:intergenic | 25.0% |
| AAACCCAAAGTTACTCTTAT+TGG | + | chr3.1:73053787-73053806 | None:intergenic | 30.0% | |
| ACAAAATCGTTTCATATCCA+AGG | - | chr3.1:73050873-73050892 | MS.gene48517:CDS | 30.0% | |
| AGTGTGTTCAAAAGACTATT+TGG | - | chr3.1:73051594-73051613 | MS.gene48517:intron | 30.0% | |
| ATACATGCTAGTTAGGAATT+AGG | + | chr3.1:73052858-73052877 | None:intergenic | 30.0% | |
| ATACTTAAGGAAAATGTCAC+AGG | + | chr3.1:73053119-73053138 | None:intergenic | 30.0% | |
| ATCATGTTCTTTCCATTGTT+TGG | - | chr3.1:73051770-73051789 | MS.gene48517:intron | 30.0% | |
| ATGAGAAAATGCAACAGAAA+AGG | + | chr3.1:73050822-73050841 | None:intergenic | 30.0% | |
| ATGATCGGCACAAATTATAT+CGG | - | chr3.1:73052442-73052461 | MS.gene48517:CDS | 30.0% | |
| CAGAACTATATGAGAATTAC+AGG | + | chr3.1:73053539-73053558 | None:intergenic | 30.0% | |
| CAGATACTAATAAACAATGC+TGG | - | chr3.1:73051937-73051956 | MS.gene48517:intron | 30.0% | |
| CTATATGAGAATTACAGGTT+TGG | + | chr3.1:73053534-73053553 | None:intergenic | 30.0% | |
| GAAAGAGTGGAAAATATAGT+TGG | + | chr3.1:73052415-73052434 | None:intergenic | 30.0% | |
| GGATTTCACTCAGAATTAAA+TGG | + | chr3.1:73051197-73051216 | None:intergenic | 30.0% | |
| TACATGCTAGTTAGGAATTA+GGG | + | chr3.1:73052857-73052876 | None:intergenic | 30.0% | |
| TACTTAAGGAAAATGTCACA+GGG | + | chr3.1:73053118-73053137 | None:intergenic | 30.0% | |
| TAGACCATAACAAAGATCAA+AGG | - | chr3.1:73051793-73051812 | MS.gene48517:intron | 30.0% | |
| TTATTATCCAACGAGTTTGA+AGG | - | chr3.1:73053682-73053701 | MS.gene48517:intron | 30.0% | |
| TTCAAACTCGTTGGATAATA+AGG | + | chr3.1:73053683-73053702 | None:intergenic | 30.0% | |
| TTCTTCAGTTACTAATATGC+AGG | - | chr3.1:73052701-73052720 | MS.gene48517:intron | 30.0% | |
| TTTGGTCCCTAAAATACTTA+AGG | + | chr3.1:73053132-73053151 | None:intergenic | 30.0% | |
| ! | ACCTTTTATTGTGTTATGCA+AGG | + | chr3.1:73052095-73052114 | None:intergenic | 30.0% |
| ! | CACATTGGATGCATTTTTAT+GGG | - | chr3.1:73052298-73052317 | MS.gene48517:intron | 30.0% |
| ! | CTTGGGAAACAATAATTTGT+AGG | + | chr3.1:73053426-73053445 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | - | chr3.1:73051072-73051091 | MS.gene48517:intron | 30.0% |
| !! | ATTTTAGGGACCAAAAATGT+TGG | - | chr3.1:73053137-73053156 | MS.gene48517:CDS | 30.0% |
| AAAGATCAAAGGTTGGAATG+AGG | - | chr3.1:73051804-73051823 | MS.gene48517:intron | 35.0% | |
| AAATGATTATCCTACCAGCT+CGG | + | chr3.1:73052555-73052574 | None:intergenic | 35.0% | |
| AAGAAGTGGTAATAGAAGCT+TGG | + | chr3.1:73052482-73052501 | None:intergenic | 35.0% | |
| ACAACACTTGGAAAAAAGGA+TGG | + | chr3.1:73053002-73053021 | None:intergenic | 35.0% | |
| ACACACAACACTTGGAAAAA+AGG | + | chr3.1:73053006-73053025 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | + | chr3.1:73051353-73051372 | None:intergenic | 35.0% | |
| AGAAGCTTGGTCATAACAAA+TGG | + | chr3.1:73052469-73052488 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | - | chr3.1:73051352-73051371 | MS.gene48517:intron | 35.0% | |
| AGCACCAATAAGAGTAACTT+TGG | - | chr3.1:73053780-73053799 | MS.gene48517:intron | 35.0% | |
| AGTGCGAATCCTTAAACAAT+TGG | + | chr3.1:73050847-73050866 | None:intergenic | 35.0% | |
| ATGTTTGTTTGTACAACTCC+AGG | + | chr3.1:73054011-73054030 | None:intergenic | 35.0% | |
| CAATCCATAACAGGAATCTT+AGG | + | chr3.1:73051651-73051670 | None:intergenic | 35.0% | |
| CCAACCTTTGATCTTTGTTA+TGG | + | chr3.1:73051800-73051819 | None:intergenic | 35.0% | |
| CCATAACAAAGATCAAAGGT+TGG | - | chr3.1:73051797-73051816 | MS.gene48517:intron | 35.0% | |
| CTCTCTTGTTAAGGATACAA+CGG | - | chr3.1:73053595-73053614 | MS.gene48517:intron | 35.0% | |
| CTCTTATGAAAACTCACTTG+TGG | - | chr3.1:73053732-73053751 | MS.gene48517:intron | 35.0% | |
| CTTACCTAAGATTCCTGTTA+TGG | - | chr3.1:73051644-73051663 | MS.gene48517:intron | 35.0% | |
| GAAGAAAAAAGAACTTACGC+CGG | + | chr3.1:73050942-73050961 | None:intergenic | 35.0% | |
| GAAGCTTGGTCATAACAAAT+GGG | + | chr3.1:73052468-73052487 | None:intergenic | 35.0% | |
| GCACCAATAAGAGTAACTTT+GGG | - | chr3.1:73053781-73053800 | MS.gene48517:intron | 35.0% | |
| GCCTTGCATAACACAATAAA+AGG | - | chr3.1:73052091-73052110 | MS.gene48517:intron | 35.0% | |
| GTTGTATCCTTAACAAGAGA+GGG | + | chr3.1:73053596-73053615 | None:intergenic | 35.0% | |
| TAATTGACTGAACTGACGAA+AGG | + | chr3.1:73051858-73051877 | None:intergenic | 35.0% | |
| TACTCATAGATCTGAGCATA+TGG | + | chr3.1:73052777-73052796 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+TGG | + | chr3.1:73052247-73052266 | None:intergenic | 35.0% | |
| TCTGGTGTATGTGTCTATAT+TGG | - | chr3.1:73051524-73051543 | MS.gene48517:intron | 35.0% | |
| TGTTATGGTCTACCAAACAA+TGG | + | chr3.1:73051785-73051804 | None:intergenic | 35.0% | |
| TTGGAAAAAAGGATGGCAAA+AGG | + | chr3.1:73052995-73053014 | None:intergenic | 35.0% | |
| ! | CATTTTTCCTTCAAACTCGT+TGG | + | chr3.1:73053692-73053711 | None:intergenic | 35.0% |
| ! | GCACATTGGATGCATTTTTA+TGG | - | chr3.1:73052297-73052316 | MS.gene48517:intron | 35.0% |
| ! | TTTTCTATGTAGGCAACTTC+TGG | - | chr3.1:73051015-73051034 | MS.gene48517:intron | 35.0% |
| !! | ACTAATATGCAGGTTGATGA+GGG | - | chr3.1:73052711-73052730 | MS.gene48517:intron | 35.0% |
| !! | AGAAGCATTTGTATGCACAT+TGG | - | chr3.1:73052283-73052302 | MS.gene48517:intron | 35.0% |
| !! | TACTAATATGCAGGTTGATG+AGG | - | chr3.1:73052710-73052729 | MS.gene48517:intron | 35.0% |
| AACAAGAGCGGCATCAATAA+TGG | + | chr3.1:73054126-73054145 | None:intergenic | 40.0% | |
| AATAAGGTAGCTGTAGCTTC+AGG | + | chr3.1:73053667-73053686 | None:intergenic | 40.0% | |
| ACAATCTTTGTCTCCCAACA+AGG | - | chr3.1:73053628-73053647 | MS.gene48517:intron | 40.0% | |
| AGAGCTTGAGAAGGTTCTAT+AGG | + | chr3.1:73052680-73052699 | None:intergenic | 40.0% | |
| ATAAGGTAGCTGTAGCTTCA+GGG | + | chr3.1:73053666-73053685 | None:intergenic | 40.0% | |
| ATTTGCATGACATGATCACC+AGG | - | chr3.1:73052226-73052245 | MS.gene48517:CDS | 40.0% | |
| CATGATCACCAGGAACTTTA+TGG | - | chr3.1:73052236-73052255 | MS.gene48517:intron | 40.0% | |
| CGTAGGCTAGGTTATTTAGT+GGG | - | chr3.1:73051557-73051576 | MS.gene48517:intron | 40.0% | |
| CGTTGTATCCTTAACAAGAG+AGG | + | chr3.1:73053597-73053616 | None:intergenic | 40.0% | |
| CTCAGACAGTTAGACAAACA+TGG | + | chr3.1:73052364-73052383 | None:intergenic | 40.0% | |
| CTGAAGAAAAGAGCTTGAGA+AGG | + | chr3.1:73052689-73052708 | None:intergenic | 40.0% | |
| CTTCTAATCTTCTGTGCTTG+TGG | - | chr3.1:73052022-73052041 | MS.gene48517:CDS | 40.0% | |
| CTTTAGTGTTGTGTTGTGTC+TGG | - | chr3.1:73051506-73051525 | MS.gene48517:intron | 40.0% | |
| GACAGTAAAACCCAAAGAGT+AGG | + | chr3.1:73052616-73052635 | None:intergenic | 40.0% | |
| GGCTTATTAGGATAAGTGGA+AGG | + | chr3.1:73050905-73050924 | None:intergenic | 40.0% | |
| GGTTGTGCAGAAAAGAACTT+GGG | + | chr3.1:73053443-73053462 | None:intergenic | 40.0% | |
| GTCTAGTGATCCTACTCTTT+GGG | - | chr3.1:73052603-73052622 | MS.gene48517:intron | 40.0% | |
| TAAAAGTGGAGTAGAACCCA+TGG | + | chr3.1:73053948-73053967 | None:intergenic | 40.0% | |
| TAAAGTTCAGTACTTCCCTG+CGG | - | chr3.1:73051878-73051897 | MS.gene48517:intron | 40.0% | |
| TACAGGGACTAAAATGCTGA+TGG | - | chr3.1:73053171-73053190 | MS.gene48517:intron | 40.0% | |
| TACTGCATGCAAGCTTTCTA+AGG | - | chr3.1:73051050-73051069 | MS.gene48517:intron | 40.0% | |
| TATGCATCCCTCTCTTGTTA+AGG | - | chr3.1:73053586-73053605 | MS.gene48517:intron | 40.0% | |
| TCTGATGAGATTTACCCATC+TGG | + | chr3.1:73052935-73052954 | None:intergenic | 40.0% | |
| TGTCTAGTGATCCTACTCTT+TGG | - | chr3.1:73052602-73052621 | MS.gene48517:intron | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | + | chr3.1:73051345-73051364 | None:intergenic | 40.0% | |
| ! | AACGGGCTTATTAGGATAAG+TGG | + | chr3.1:73050909-73050928 | None:intergenic | 40.0% |
| ! | ATAATTTGTGCCGATCATCC+TGG | + | chr3.1:73052440-73052459 | None:intergenic | 40.0% |
| ! | ATATTGGTGCTTCATTGCGT+AGG | - | chr3.1:73051540-73051559 | MS.gene48517:intron | 40.0% |
| ! | CTGTTATGGATTGATGCAGT+GGG | - | chr3.1:73051658-73051677 | MS.gene48517:intron | 40.0% |
| ! | TAATTTGTGCCGATCATCCT+GGG | + | chr3.1:73052439-73052458 | None:intergenic | 40.0% |
| ! | TATTTTCCACTCTTTCTCCC+AGG | - | chr3.1:73052419-73052438 | MS.gene48517:CDS | 40.0% |
| !! | ACAAGGCATTGTCTTCAGAT+TGG | + | chr3.1:73053497-73053516 | None:intergenic | 40.0% |
| !! | AGCCTGAAAAGCTTTGAGAT+GGG | + | chr3.1:73051833-73051852 | None:intergenic | 40.0% |
| AATGCGTGTTTGACACGTGT+TGG | - | chr3.1:73051403-73051422 | MS.gene48517:intron | 45.0% | |
| ACAGGACTGCTTTCAAGAAG+TGG | + | chr3.1:73052496-73052515 | None:intergenic | 45.0% | |
| ACATCATTTACTCACCGAGC+TGG | - | chr3.1:73052538-73052557 | MS.gene48517:intron | 45.0% | |
| ACTCTTTCTCCCAGGATGAT+CGG | - | chr3.1:73052427-73052446 | MS.gene48517:CDS | 45.0% | |
| AGATAGTGTTGCAACTCGCA+AGG | - | chr3.1:73053808-73053827 | MS.gene48517:intron | 45.0% | |
| ATCAGAGCAGTTGTTGTCAG+AGG | - | chr3.1:73051684-73051703 | MS.gene48517:intron | 45.0% | |
| CCACTGCATCAATCCATAAC+AGG | + | chr3.1:73051660-73051679 | None:intergenic | 45.0% | |
| CGAAGCATGCACTTAGAAAG+TGG | + | chr3.1:73051218-73051237 | None:intergenic | 45.0% | |
| CTATTGGAATCCTCTGAGTG+CGG | - | chr3.1:73054092-73054111 | MS.gene48517:CDS | 45.0% | |
| GCGTAGGCTAGGTTATTTAG+TGG | - | chr3.1:73051556-73051575 | MS.gene48517:intron | 45.0% | |
| GGGTTGTGCAGAAAAGAACT+TGG | + | chr3.1:73053444-73053463 | None:intergenic | 45.0% | |
| TAAGGTAGCTGTAGCTTCAG+GGG | + | chr3.1:73053665-73053684 | None:intergenic | 45.0% | |
| TAAGTGGAAGGTGAAGACCT+TGG | + | chr3.1:73050893-73050912 | None:intergenic | 45.0% | |
| TATTGGAATCCTCTGAGTGC+GGG | - | chr3.1:73054093-73054112 | MS.gene48517:CDS | 45.0% | |
| TGATTACTGATCGTAGCCCT+CGG | + | chr3.1:73051992-73052011 | None:intergenic | 45.0% | |
| TGGCATGAGATCAACAGACA+AGG | + | chr3.1:73053514-73053533 | None:intergenic | 45.0% | |
| ! | ATGACGCAAACGGGCTTATT+AGG | + | chr3.1:73050917-73050936 | None:intergenic | 45.0% |
| ! | CCTGTTATGGATTGATGCAG+TGG | - | chr3.1:73051657-73051676 | MS.gene48517:intron | 45.0% |
| ! | GCATGCAAGCTTTCTAAGGA+AGG | - | chr3.1:73051054-73051073 | MS.gene48517:intron | 45.0% |
| ! | GTTGATGAGGGAACTGTATC+TGG | - | chr3.1:73052723-73052742 | MS.gene48517:intron | 45.0% |
| ! | TATGTAGGCAACTTCTGGCT+TGG | - | chr3.1:73051020-73051039 | MS.gene48517:intron | 45.0% |
| ! | TTCTTTTCTGCACAACCCGT+GGG | - | chr3.1:73053446-73053465 | MS.gene48517:intron | 45.0% |
| !! | ATGTAGGCAACTTCTGGCTT+GGG | - | chr3.1:73051021-73051040 | MS.gene48517:intron | 45.0% |
| !! | CAGCCTGAAAAGCTTTGAGA+TGG | + | chr3.1:73051834-73051853 | None:intergenic | 45.0% |
| !! | TGCTTTGGGGATGCAGTAAT+AGG | - | chr3.1:73052169-73052188 | MS.gene48517:CDS | 45.0% |
| AAGGTCCATAGCAACGCCAT+AGG | + | chr3.1:73050803-73050822 | None:intergenic | 50.0% | |
| AAGTTCCAGCAAGCCTGTCT+TGG | - | chr3.1:73054039-73054058 | MS.gene48517:CDS | 50.0% | |
| AGTTCCAGCAAGCCTGTCTT+GGG | - | chr3.1:73054040-73054059 | MS.gene48517:CDS | 50.0% | |
| CAAAGAATGCCACCCAAGAC+AGG | + | chr3.1:73054055-73054074 | None:intergenic | 50.0% | |
| CAGAGGATTCCAATAGGCGT+AGG | + | chr3.1:73054088-73054107 | None:intergenic | 50.0% | |
| CATTTACTCACCGAGCTGGT+AGG | - | chr3.1:73052542-73052561 | MS.gene48517:intron | 50.0% | |
| CGCACTCAGAGGATTCCAAT+AGG | + | chr3.1:73054094-73054113 | None:intergenic | 50.0% | |
| CTGTACCGAGCAGTGCAAAT+CGG | + | chr3.1:73051920-73051939 | None:intergenic | 50.0% | |
| GATCATCCTGGGAGAAAGAG+TGG | + | chr3.1:73052428-73052447 | None:intergenic | 50.0% | |
| TACCCATCTGGCAAAGCTGT+CGG | + | chr3.1:73052923-73052942 | None:intergenic | 50.0% | |
| TGCATCAGTGTTGCAGATCC+TGG | - | chr3.1:73053990-73054009 | MS.gene48517:intron | 50.0% | |
| TTGCCAAAAGCAAGAGCCCA+CGG | + | chr3.1:73053465-73053484 | None:intergenic | 50.0% | |
| ! | CGCCCATCTCAAAGCTTTTC+AGG | - | chr3.1:73051828-73051847 | MS.gene48517:intron | 50.0% |
| ! | GGATTCCGATTTGCACTGCT+CGG | - | chr3.1:73051912-73051931 | MS.gene48517:intron | 50.0% |
| ! | GTTCTTTTCTGCACAACCCG+TGG | - | chr3.1:73053445-73053464 | MS.gene48517:intron | 50.0% |
| AAGCCCGTTTGCGTCATCAC+CGG | - | chr3.1:73050920-73050939 | MS.gene48517:CDS | 55.0% | |
| AATCCAAAAGCCACTGCCGC+AGG | + | chr3.1:73051897-73051916 | None:intergenic | 55.0% | |
| ATCCAAAAGCCACTGCCGCA+GGG | + | chr3.1:73051896-73051915 | None:intergenic | 55.0% | |
| ATCTCCTAGAGTCACAGCCG+AGG | - | chr3.1:73051972-73051991 | MS.gene48517:intron | 55.0% | |
| CACCGACAGCTTTGCCAGAT+GGG | - | chr3.1:73052918-73052937 | MS.gene48517:intron | 55.0% | |
| GGAATCATTCCCGCACTCAG+AGG | + | chr3.1:73054105-73054124 | None:intergenic | 55.0% | |
| GGCGGAGTATGCTCCTTGTT+GGG | + | chr3.1:73053644-73053663 | None:intergenic | 55.0% | |
| GGTGCTTCATTGCGTAGGCT+AGG | - | chr3.1:73051545-73051564 | MS.gene48517:intron | 55.0% | |
| TCTCCTAGAGTCACAGCCGA+GGG | - | chr3.1:73051973-73051992 | MS.gene48517:intron | 55.0% | |
| TGCCAAAAGCAAGAGCCCAC+GGG | + | chr3.1:73053464-73053483 | None:intergenic | 55.0% | |
| ! | AACCCGTGGGCTCTTGCTTT+TGG | - | chr3.1:73053459-73053478 | MS.gene48517:intron | 55.0% |
| ! | ACTGAAGCGCCTACGCCTAT+TGG | - | chr3.1:73054076-73054095 | MS.gene48517:CDS | 55.0% |
| ! | TACGCCGGTGATGACGCAAA+CGG | + | chr3.1:73050927-73050946 | None:intergenic | 55.0% |
| CCACCGACAGCTTTGCCAGA+TGG | - | chr3.1:73052917-73052936 | MS.gene48517:intron | 60.0% | |
| CCATCTGGCAAAGCTGTCGG+TGG | + | chr3.1:73052920-73052939 | None:intergenic | 60.0% | |
| GGGCGGAGTATGCTCCTTGT+TGG | + | chr3.1:73053645-73053664 | None:intergenic | 60.0% | |
| GGTAGCTGTAGCTTCAGGGG+CGG | + | chr3.1:73053662-73053681 | None:intergenic | 60.0% | |
| TAGCCCTCGGCTGTGACTCT+AGG | + | chr3.1:73051979-73051998 | None:intergenic | 60.0% | |
| TCAGTACTTCCCTGCGGCAG+TGG | - | chr3.1:73051884-73051903 | MS.gene48517:intron | 60.0% | |
| TCCAGCAAGCCTGTCTTGGG+TGG | - | chr3.1:73054043-73054062 | MS.gene48517:CDS | 60.0% | |
| ! | ACGCCGGTGATGACGCAAAC+GGG | + | chr3.1:73050926-73050945 | None:intergenic | 60.0% |
| ! | TTCCCTGCGGCAGTGGCTTT+TGG | - | chr3.1:73051891-73051910 | MS.gene48517:intron | 60.0% |
| GCCACCCAAGACAGGCTTGC+TGG | + | chr3.1:73054047-73054066 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73050803 | 73054151 | 73050803 | ID=MS.gene48517 |
| chr3.1 | mRNA | 73050803 | 73054151 | 73050803 | ID=MS.gene48517.t1;Parent=MS.gene48517 |
| chr3.1 | exon | 73054011 | 73054151 | 73054011 | ID=MS.gene48517.t1.exon1;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73054011 | 73054151 | 73054011 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73053861 | 73053927 | 73053861 | ID=MS.gene48517.t1.exon2;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73053861 | 73053927 | 73053861 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73053249 | 73053277 | 73053249 | ID=MS.gene48517.t1.exon3;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73053249 | 73053277 | 73053249 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73052950 | 73053158 | 73052950 | ID=MS.gene48517.t1.exon4;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73052950 | 73053158 | 73052950 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73052395 | 73052513 | 73052395 | ID=MS.gene48517.t1.exon5;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73052395 | 73052513 | 73052395 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73052150 | 73052245 | 73052150 | ID=MS.gene48517.t1.exon6;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73052150 | 73052245 | 73052150 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73051990 | 73052065 | 73051990 | ID=MS.gene48517.t1.exon7;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73051990 | 73052065 | 73051990 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| chr3.1 | exon | 73050803 | 73050956 | 73050803 | ID=MS.gene48517.t1.exon8;Parent=MS.gene48517.t1 |
| chr3.1 | CDS | 73050803 | 73050956 | 73050803 | ID=cds.MS.gene48517.t1;Parent=MS.gene48517.t1 |
| Gene Sequence |
| Protein sequence |
