Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48704.t1 | XP_003607601.1 | 84.3 | 286 | 13 | 1 | 44 | 297 | 128 | 413 | 2.80E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48704.t1 | Q9SJI7 | 49.0 | 296 | 113 | 3 | 35 | 297 | 95 | 385 | 2.1e-70 | 267.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48704.t1 | G7JCM9 | 84.3 | 286 | 13 | 1 | 44 | 297 | 128 | 413 | 2.0e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene48704 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene050430 | MS.gene48704 | 0.803277 | 3.76E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene48704 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene48704 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene48704 | 0.802177 | 6.35E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene48704 | 0.812541 | 4.03E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene48704 | 0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene48704 | 0.841793 | 3.83E-58 | -1.69E-46 |
| MS.gene052333 | MS.gene48704 | 0.807715 | 4.41E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene48704 | 0.832882 | 7.34E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene48704 | 0.821479 | 3.95E-53 | -1.69E-46 |
| MS.gene053512 | MS.gene48704 | 0.806793 | 6.92E-50 | -1.69E-46 |
| MS.gene053584 | MS.gene48704 | 0.801489 | 8.79E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene48704 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene48704 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene48704 | 0.818156 | 2.27E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene48704 | 0.820558 | 6.44E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene48704 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene48704 | 0.818023 | 2.43E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene48704 | 0.832466 | 9.31E-56 | -1.69E-46 |
| MS.gene055357 | MS.gene48704 | 0.825191 | 5.36E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene48704 | 0.829047 | 6.40E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene48704 | 0.821933 | 3.10E-53 | -1.69E-46 |
| MS.gene055875 | MS.gene48704 | 0.803546 | 3.31E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene48704 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene48704 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene057639 | MS.gene48704 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene057656 | MS.gene48704 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene057755 | MS.gene48704 | 0.82921 | 5.85E-55 | -1.69E-46 |
| MS.gene057756 | MS.gene48704 | 0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene48704 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene48704 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene059382 | MS.gene48704 | 0.807995 | 3.85E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene48704 | 0.837774 | 4.26E-57 | -1.69E-46 |
| MS.gene060137 | MS.gene48704 | -0.803155 | 3.99E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene48704 | 0.819977 | 8.75E-53 | -1.69E-46 |
| MS.gene060312 | MS.gene48704 | 0.805149 | 1.53E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene48704 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene060553 | MS.gene48704 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene060919 | MS.gene48704 | 0.803372 | 3.60E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene48704 | -0.815708 | 8.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48704.t1 | MTR_4g080100 | 77.848 | 316 | 37 | 2 | 14 | 297 | 99 | 413 | 1.61e-168 | 475 |
| MS.gene48704.t1 | MTR_2g015690 | 40.411 | 292 | 113 | 4 | 44 | 297 | 122 | 390 | 3.87e-60 | 197 |
| MS.gene48704.t1 | MTR_4g087830 | 33.219 | 292 | 128 | 5 | 44 | 297 | 107 | 369 | 6.18e-43 | 152 |
| MS.gene48704.t1 | MTR_4g087810 | 32.877 | 292 | 129 | 6 | 44 | 297 | 116 | 378 | 8.06e-41 | 146 |
| MS.gene48704.t1 | MTR_7g096120 | 31.715 | 309 | 127 | 7 | 45 | 295 | 174 | 456 | 4.80e-37 | 138 |
| MS.gene48704.t1 | MTR_7g096140 | 30.844 | 308 | 131 | 7 | 45 | 295 | 174 | 456 | 2.49e-36 | 135 |
| MS.gene48704.t1 | MTR_4g077070 | 30.000 | 320 | 135 | 7 | 37 | 295 | 188 | 479 | 5.95e-33 | 127 |
| MS.gene48704.t1 | MTR_7g006400 | 38.961 | 154 | 64 | 5 | 51 | 201 | 199 | 325 | 1.48e-21 | 94.7 |
| MS.gene48704.t1 | MTR_7g081620 | 34.194 | 155 | 77 | 5 | 48 | 196 | 169 | 304 | 3.59e-16 | 79.0 |
| MS.gene48704.t1 | MTR_1995s0010 | 33.588 | 131 | 62 | 2 | 68 | 198 | 1 | 106 | 2.12e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48704.t1 | AT2G42690 | 48.726 | 314 | 116 | 5 | 21 | 298 | 82 | 386 | 4.41e-92 | 279 |
| MS.gene48704.t1 | AT4G18550 | 36.304 | 303 | 128 | 7 | 35 | 297 | 113 | 390 | 4.40e-50 | 171 |
| MS.gene48704.t1 | AT4G18550 | 36.304 | 303 | 128 | 7 | 35 | 297 | 130 | 407 | 4.69e-50 | 171 |
| MS.gene48704.t1 | AT1G06250 | 34.495 | 287 | 126 | 4 | 48 | 295 | 111 | 374 | 3.51e-43 | 153 |
| MS.gene48704.t1 | AT1G06250 | 34.276 | 283 | 124 | 4 | 52 | 295 | 1 | 260 | 1.53e-41 | 146 |
| MS.gene48704.t1 | AT1G06800 | 30.892 | 314 | 126 | 9 | 45 | 295 | 184 | 469 | 1.18e-32 | 126 |
| MS.gene48704.t1 | AT4G18550 | 40.361 | 166 | 74 | 3 | 35 | 200 | 130 | 270 | 4.04e-32 | 121 |
| MS.gene48704.t1 | AT2G30550 | 28.435 | 313 | 134 | 8 | 45 | 295 | 200 | 484 | 7.83e-30 | 118 |
| MS.gene48704.t1 | AT1G30370 | 26.885 | 305 | 144 | 6 | 44 | 296 | 212 | 489 | 1.35e-25 | 106 |
| MS.gene48704.t1 | AT2G31690 | 31.841 | 201 | 106 | 4 | 46 | 240 | 185 | 360 | 1.20e-23 | 100 |
| MS.gene48704.t1 | AT1G06800 | 29.856 | 278 | 104 | 9 | 45 | 259 | 184 | 433 | 1.87e-23 | 100 |
| MS.gene48704.t1 | AT1G05800 | 33.333 | 198 | 101 | 3 | 49 | 240 | 177 | 349 | 7.75e-23 | 98.2 |
| MS.gene48704.t1 | AT2G30550 | 35.802 | 162 | 68 | 5 | 45 | 198 | 200 | 333 | 9.08e-22 | 95.1 |
| MS.gene48704.t1 | AT1G51440 | 48.101 | 79 | 37 | 1 | 221 | 295 | 396 | 474 | 1.19e-15 | 77.4 |
| MS.gene48704.t1 | AT2G44810 | 33.775 | 151 | 70 | 6 | 48 | 196 | 96 | 218 | 2.48e-13 | 70.1 |
| MS.gene48704.t1 | AT2G44810 | 32.667 | 150 | 73 | 5 | 48 | 196 | 186 | 308 | 3.40e-13 | 70.1 |
Find 76 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCTTATTATTGTTGTTT+GGG | 0.238162 | 4.4:-71715144 | None:intergenic |
| CCTCCCAAACAACAATAATA+AGG | 0.244272 | 4.4:+71715141 | MS.gene48704:CDS |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4.4:+71715866 | MS.gene48704:intron |
| CCGTTTACTGCATTTGTGTT+TGG | 0.278706 | 4.4:+71715746 | MS.gene48704:CDS |
| ACCAACCCTTCATTACTTTA+GGG | 0.280032 | 4.4:-71715522 | None:intergenic |
| GTACCCTTATTATTGTTGTT+TGG | 0.286185 | 4.4:-71715145 | None:intergenic |
| CGTTTACTGCATTTGTGTTT+GGG | 0.289332 | 4.4:+71715747 | MS.gene48704:CDS |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4.4:+71715865 | MS.gene48704:intron |
| AACCAACCCTTCATTACTTT+AGG | 0.305402 | 4.4:-71715523 | None:intergenic |
| GCTGCTCCTGAATCTGCTTC+TGG | 0.315313 | 4.4:+71715085 | MS.gene48704:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4.4:+71716002 | MS.gene48704:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4.4:+71716033 | MS.gene48704:CDS |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.380761 | 4.4:+71714948 | MS.gene48704:CDS |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4.4:+71716001 | MS.gene48704:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4.4:+71716012 | MS.gene48704:CDS |
| CCAAACACAAATGCAGTAAA+CGG | 0.418769 | 4.4:-71715746 | None:intergenic |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4.4:+71715992 | MS.gene48704:CDS |
| CATGACTTTGTTGAAGAATG+AGG | 0.431066 | 4.4:-71714827 | None:intergenic |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4.4:+71716066 | MS.gene48704:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4.4:+71715652 | MS.gene48704:CDS |
| AATTGTGAGTGCGTTTGATT+TGG | 0.435943 | 4.4:+71715699 | MS.gene48704:CDS |
| CTCCCAAACAACAATAATAA+GGG | 0.439311 | 4.4:+71715142 | MS.gene48704:CDS |
| AACAAACCAGAAGCAGATTC+AGG | 0.440065 | 4.4:-71715091 | None:intergenic |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4.4:-71714913 | None:intergenic |
| TGCCGGCGTCATGGTGGGTT+AGG | 0.457831 | 4.4:+71716101 | MS.gene48704:CDS |
| TGTGAGTGCGTTTGATTTGG+TGG | 0.460541 | 4.4:+71715702 | MS.gene48704:CDS |
| CTTGAATGGATTAACGTGTT+TGG | 0.465861 | 4.4:+71715061 | MS.gene48704:CDS |
| GTGGGTTAGGTATGGTGCGT+AGG | 0.467712 | 4.4:+71716114 | MS.gene48704:CDS |
| GTACTACAAGGGACCTTGAA+TGG | 0.467880 | 4.4:+71715047 | MS.gene48704:CDS |
| ATTCGAAGAATCCTAGTGAT+TGG | 0.468076 | 4.4:+71715948 | MS.gene48704:CDS |
| GAGAGTCCCTAAAGTAATGA+AGG | 0.471259 | 4.4:+71715516 | MS.gene48704:CDS |
| CACTCACTATCACGTGAGTT+GGG | 0.482287 | 4.4:+71714931 | MS.gene48704:CDS |
| CCTTATTATTGTTGTTTGGG+AGG | 0.489521 | 4.4:-71715141 | None:intergenic |
| TTATTGGGGTATGAGTATAC+AGG | 0.493548 | 4.4:+71715881 | MS.gene48704:CDS |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4.4:+71716092 | MS.gene48704:CDS |
| CAAACACAAATGCAGTAAAC+GGG | 0.496631 | 4.4:-71715745 | None:intergenic |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4.4:+71716026 | MS.gene48704:CDS |
| CAAACACGTTAATCCATTCA+AGG | 0.503129 | 4.4:-71715060 | None:intergenic |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.507752 | 4.4:+71715521 | MS.gene48704:CDS |
| GCGTCATGGTGGGTTAGGTA+TGG | 0.509549 | 4.4:+71716106 | MS.gene48704:CDS |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4.4:+71716018 | MS.gene48704:CDS |
| AAACAACAGTGTAGTGTGTA+GGG | 0.515742 | 4.4:-71714858 | None:intergenic |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4.4:+71714994 | MS.gene48704:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4.4:+71715993 | MS.gene48704:CDS |
| TCACTCACTATCACGTGAGT+TGG | 0.520669 | 4.4:+71714930 | MS.gene48704:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4.4:+71715979 | MS.gene48704:CDS |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4.4:-71714993 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4.4:+71714953 | MS.gene48704:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4.4:+71715983 | MS.gene48704:CDS |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4.4:+71716095 | MS.gene48704:CDS |
| GAAACAACAGTGTAGTGTGT+AGG | 0.540411 | 4.4:-71714859 | None:intergenic |
| TCACGTGCCGGCGTCATGGT+GGG | 0.541798 | 4.4:+71716096 | MS.gene48704:CDS |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4.4:+71715987 | MS.gene48704:CDS |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4.4:+71714995 | MS.gene48704:CDS |
| TGGGTTAGGTATGGTGCGTA+GGG | 0.550429 | 4.4:+71716115 | MS.gene48704:CDS |
| GCGTTTGATTTGGTGGAGAA+CGG | 0.567670 | 4.4:+71715709 | MS.gene48704:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4.4:+71715867 | MS.gene48704:intron |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4.4:-71715655 | None:intergenic |
| AGCTTTATTCCCAACTTGCG+GGG | 0.579031 | 4.4:-71715771 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4.4:+71714981 | MS.gene48704:CDS |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4.4:+71716003 | MS.gene48704:CDS |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4.4:+71716084 | MS.gene48704:CDS |
| TACCTAACCCACCATGACGC+CGG | 0.590563 | 4.4:-71716103 | None:intergenic |
| TGCAAATTATGCCAATCACT+AGG | 0.595847 | 4.4:-71715959 | None:intergenic |
| TTGTGTGGCGTGGTACTACA+AGG | 0.605960 | 4.4:+71715035 | MS.gene48704:CDS |
| TGAGTATACAGGGACAGAGT+TGG | 0.607194 | 4.4:+71715892 | MS.gene48704:CDS |
| AGAGTCCCTAAAGTAATGAA+GGG | 0.619750 | 4.4:+71715517 | MS.gene48704:CDS |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4.4:+71715642 | MS.gene48704:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4.4:+71715664 | MS.gene48704:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4.4:+71715486 | MS.gene48704:CDS |
| TATTGGGGTATGAGTATACA+GGG | 0.649833 | 4.4:+71715882 | MS.gene48704:CDS |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4.4:+71715020 | MS.gene48704:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4.4:-71714955 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4.4:+71715025 | MS.gene48704:CDS |
| ATACACGTGCAGTAGCGTAG+AGG | 0.716295 | 4.4:-71714885 | None:intergenic |
| TGTGTGGCGTGGTACTACAA+GGG | 0.775410 | 4.4:+71715036 | MS.gene48704:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATCTAAAAATGAATA+TGG | - | chr4.4:71715212-71715231 | None:intergenic | 15.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | + | chr4.4:71715808-71715827 | MS.gene48704:intron | 20.0% |
| !! | CGTTACATATACTTTATAAA+TGG | - | chr4.4:71715422-71715441 | None:intergenic | 20.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | - | chr4.4:71715570-71715589 | None:intergenic | 25.0% |
| !!! | TACCCTTATTATTGTTGTTT+GGG | - | chr4.4:71715147-71715166 | None:intergenic | 25.0% |
| AAAACTTATACAAACTCACC+TGG | - | chr4.4:71715256-71715275 | None:intergenic | 30.0% | |
| ATCTTATACCACATTATCCA+GGG | + | chr4.4:71715855-71715874 | MS.gene48704:intron | 30.0% | |
| CTCCCAAACAACAATAATAA+GGG | + | chr4.4:71715142-71715161 | MS.gene48704:CDS | 30.0% | |
| GGAATAAAGCTTTCAATGAT+AGG | + | chr4.4:71715783-71715802 | MS.gene48704:intron | 30.0% | |
| ! | AACATACTTAAACTGATTCC+AGG | + | chr4.4:71715235-71715254 | MS.gene48704:intron | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | + | chr4.4:71715822-71715841 | MS.gene48704:intron | 30.0% |
| ! | GTACCCTTATTATTGTTGTT+TGG | - | chr4.4:71715148-71715167 | None:intergenic | 30.0% |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | - | chr4.4:71715571-71715590 | None:intergenic | 30.0% |
| ! | TAAGTCTTGTGATTACTTGA+AGG | + | chr4.4:71716066-71716085 | MS.gene48704:CDS | 30.0% |
| AAACAACAGTGTAGTGTGTA+GGG | - | chr4.4:71714861-71714880 | None:intergenic | 35.0% | |
| AACCAACCCTTCATTACTTT+AGG | - | chr4.4:71715526-71715545 | None:intergenic | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | - | chr4.4:71715866-71715885 | None:intergenic | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | + | chr4.4:71715652-71715671 | MS.gene48704:CDS | 35.0% | |
| AATTGTGAGTGCGTTTGATT+TGG | + | chr4.4:71715699-71715718 | MS.gene48704:CDS | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | + | chr4.4:71715865-71715884 | MS.gene48704:intron | 35.0% | |
| ACCAACCCTTCATTACTTTA+GGG | - | chr4.4:71715525-71715544 | None:intergenic | 35.0% | |
| AGAGTCCCTAAAGTAATGAA+GGG | + | chr4.4:71715517-71715536 | MS.gene48704:CDS | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | + | chr4.4:71715867-71715886 | MS.gene48704:intron | 35.0% | |
| ATTCGAAGAATCCTAGTGAT+TGG | + | chr4.4:71715948-71715967 | MS.gene48704:CDS | 35.0% | |
| CAAACACAAATGCAGTAAAC+GGG | - | chr4.4:71715748-71715767 | None:intergenic | 35.0% | |
| CAAACACGTTAATCCATTCA+AGG | - | chr4.4:71715063-71715082 | None:intergenic | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | + | chr4.4:71715642-71715661 | MS.gene48704:CDS | 35.0% | |
| CATGACTTTGTTGAAGAATG+AGG | - | chr4.4:71714830-71714849 | None:intergenic | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | + | chr4.4:71715866-71715885 | MS.gene48704:intron | 35.0% | |
| CCAAACACAAATGCAGTAAA+CGG | - | chr4.4:71715749-71715768 | None:intergenic | 35.0% | |
| CCTCCCAAACAACAATAATA+AGG | + | chr4.4:71715141-71715160 | MS.gene48704:CDS | 35.0% | |
| CGTTTACTGCATTTGTGTTT+GGG | + | chr4.4:71715747-71715766 | MS.gene48704:CDS | 35.0% | |
| GAGTGAAGAATAAAAGCTTC+AGG | - | chr4.4:71714916-71714935 | None:intergenic | 35.0% | |
| GATCTTATACCACATTATCC+AGG | + | chr4.4:71715854-71715873 | MS.gene48704:intron | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | + | chr4.4:71715664-71715683 | MS.gene48704:CDS | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | + | chr4.4:71715020-71715039 | MS.gene48704:CDS | 35.0% | |
| TATTGGGGTATGAGTATACA+GGG | + | chr4.4:71715882-71715901 | MS.gene48704:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+AGG | - | chr4.4:71715962-71715981 | None:intergenic | 35.0% | |
| TTATTGGGGTATGAGTATAC+AGG | + | chr4.4:71715881-71715900 | MS.gene48704:CDS | 35.0% | |
| !! | AAAGCTTTATTCCCAACTTG+CGG | - | chr4.4:71715776-71715795 | None:intergenic | 35.0% |
| !! | CCTTATTATTGTTGTTTGGG+AGG | - | chr4.4:71715144-71715163 | None:intergenic | 35.0% |
| !! | CTTGAATGGATTAACGTGTT+TGG | + | chr4.4:71715061-71715080 | MS.gene48704:CDS | 35.0% |
| AAAAACAAGCGTGAGAACAC+AGG | + | chr4.4:71715585-71715604 | MS.gene48704:CDS | 40.0% | |
| AACAAACCAGAAGCAGATTC+AGG | - | chr4.4:71715094-71715113 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | - | chr4.4:71714958-71714977 | None:intergenic | 40.0% | |
| CCGTTTACTGCATTTGTGTT+TGG | + | chr4.4:71715746-71715765 | MS.gene48704:CDS | 40.0% | |
| GAAACAACAGTGTAGTGTGT+AGG | - | chr4.4:71714862-71714881 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | + | chr4.4:71715025-71715044 | MS.gene48704:CDS | 40.0% | |
| GAGAGTCCCTAAAGTAATGA+AGG | + | chr4.4:71715516-71715535 | MS.gene48704:CDS | 40.0% | |
| GCAAGCTATGTTGCATATTG+TGG | + | chr4.4:71715979-71715998 | MS.gene48704:CDS | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | + | chr4.4:71715521-71715540 | MS.gene48704:CDS | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | - | chr4.4:71715658-71715677 | None:intergenic | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | + | chr4.4:71715993-71716012 | MS.gene48704:CDS | 40.0% |
| !! | AAGCTTTATTCCCAACTTGC+GGG | - | chr4.4:71715775-71715794 | None:intergenic | 40.0% |
| !!! | CTCACGCTTGTTTTTGTGAA+AGG | - | chr4.4:71715580-71715599 | None:intergenic | 40.0% |
| CAACTCTCTACTCCGTTCAT+CGG | - | chr4.4:71714996-71715015 | None:intergenic | 45.0% | |
| CACTCACTATCACGTGAGTT+GGG | + | chr4.4:71714931-71714950 | MS.gene48704:CDS | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | + | chr4.4:71714995-71715014 | MS.gene48704:CDS | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | + | chr4.4:71715983-71716002 | MS.gene48704:CDS | 45.0% | |
| GTACTACAAGGGACCTTGAA+TGG | + | chr4.4:71715047-71715066 | MS.gene48704:CDS | 45.0% | |
| TCACTCACTATCACGTGAGT+TGG | + | chr4.4:71714930-71714949 | MS.gene48704:CDS | 45.0% | |
| TCATACCCCAATAACTTCCC+TGG | - | chr4.4:71715875-71715894 | None:intergenic | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | + | chr4.4:71714981-71715000 | MS.gene48704:CDS | 45.0% | |
| TGAGTATACAGGGACAGAGT+TGG | + | chr4.4:71715892-71715911 | MS.gene48704:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | + | chr4.4:71715987-71716006 | MS.gene48704:CDS | 45.0% | |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | + | chr4.4:71716026-71716045 | MS.gene48704:CDS | 45.0% |
| ! | CATATTGTGGCTGGTTGGAA+TGG | + | chr4.4:71715992-71716011 | MS.gene48704:CDS | 45.0% |
| !! | AGCTTTATTCCCAACTTGCG+GGG | - | chr4.4:71715774-71715793 | None:intergenic | 45.0% |
| !! | GCGTTTGATTTGGTGGAGAA+CGG | + | chr4.4:71715709-71715728 | MS.gene48704:CDS | 45.0% |
| !! | TGTGAGTGCGTTTGATTTGG+TGG | + | chr4.4:71715702-71715721 | MS.gene48704:CDS | 45.0% |
| ATACACGTGCAGTAGCGTAG+AGG | - | chr4.4:71714888-71714907 | None:intergenic | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | + | chr4.4:71714994-71715013 | MS.gene48704:CDS | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | + | chr4.4:71716002-71716021 | MS.gene48704:CDS | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | + | chr4.4:71714953-71714972 | MS.gene48704:CDS | 50.0% | |
| GGTGAAGGTGAAGAGGAGTT+TGG | + | chr4.4:71716033-71716052 | MS.gene48704:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | + | chr4.4:71716003-71716022 | MS.gene48704:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACAA+GGG | + | chr4.4:71715036-71715055 | MS.gene48704:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACA+AGG | + | chr4.4:71715035-71715054 | MS.gene48704:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | + | chr4.4:71716018-71716037 | MS.gene48704:CDS | 50.0% |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | - | chr4.4:71715560-71715579 | None:intergenic | 50.0% |
| GCTGCTCCTGAATCTGCTTC+TGG | + | chr4.4:71715085-71715104 | MS.gene48704:CDS | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | + | chr4.4:71716001-71716020 | MS.gene48704:CDS | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | + | chr4.4:71714948-71714967 | MS.gene48704:CDS | 55.0% | |
| TACCTAACCCACCATGACGC+CGG | - | chr4.4:71716106-71716125 | None:intergenic | 55.0% | |
| TAGCAGCAGCAGTGACGATG+AGG | + | chr4.4:71715486-71715505 | MS.gene48704:CDS | 55.0% | |
| TGTTTGGGTCCCCGCAAGTT+GGG | + | chr4.4:71715762-71715781 | MS.gene48704:intron | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | + | chr4.4:71716012-71716031 | MS.gene48704:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | + | chr4.4:71716084-71716103 | MS.gene48704:CDS | 55.0% |
| !! | GCGTCATGGTGGGTTAGGTA+TGG | + | chr4.4:71716106-71716125 | MS.gene48704:CDS | 55.0% |
| GTGTTTGGGTCCCCGCAAGT+TGG | + | chr4.4:71715761-71715780 | MS.gene48704:intron | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | + | chr4.4:71716092-71716111 | MS.gene48704:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | + | chr4.4:71716096-71716115 | MS.gene48704:CDS | 65.0% |
| !! | TGCCGGCGTCATGGTGGGTT+AGG | + | chr4.4:71716101-71716120 | MS.gene48704:CDS | 65.0% |
| ! | GTCACGTGCCGGCGTCATGG+TGG | + | chr4.4:71716095-71716114 | MS.gene48704:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 71714818 | 71716135 | 71714818 | ID=MS.gene48704 |
| chr4.4 | mRNA | 71714818 | 71716135 | 71714818 | ID=MS.gene48704.t1;Parent=MS.gene48704 |
| chr4.4 | exon | 71714818 | 71715163 | 71714818 | ID=MS.gene48704.t1.exon1;Parent=MS.gene48704.t1 |
| chr4.4 | CDS | 71714818 | 71715163 | 71714818 | ID=cds.MS.gene48704.t1;Parent=MS.gene48704.t1 |
| chr4.4 | exon | 71715479 | 71715778 | 71715479 | ID=MS.gene48704.t1.exon2;Parent=MS.gene48704.t1 |
| chr4.4 | CDS | 71715479 | 71715778 | 71715479 | ID=cds.MS.gene48704.t1;Parent=MS.gene48704.t1 |
| chr4.4 | exon | 71715876 | 71716135 | 71715876 | ID=MS.gene48704.t1.exon3;Parent=MS.gene48704.t1 |
| chr4.4 | CDS | 71715876 | 71716135 | 71715876 | ID=cds.MS.gene48704.t1;Parent=MS.gene48704.t1 |
| Gene Sequence |
| Protein sequence |
