Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49047.t1 | XP_003592309.1 | 98.8 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 9.20E-172 | 612.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49047.t1 | Q0WUQ1 | 52.4 | 315 | 132 | 6 | 24 | 333 | 41 | 342 | 1.7e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49047.t1 | G7IAQ7 | 98.8 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 6.6e-172 | 612.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49047 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene04915 | MS.gene49047 | 0.850942 | 1.23E-60 | -1.69E-46 |
| MS.gene04917 | MS.gene49047 | 0.855238 | 7.21E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene49047 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene49047 | 0.821223 | 4.53E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene49047 | 0.832111 | 1.14E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene49047 | 0.827983 | 1.16E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene49047 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene050737 | MS.gene49047 | 0.801314 | 9.54E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene49047 | 0.833837 | 4.24E-56 | -1.69E-46 |
| MS.gene050941 | MS.gene49047 | 0.84165 | 4.18E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene49047 | 0.811866 | 5.65E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene49047 | 0.819864 | 9.29E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene49047 | 0.810545 | 1.09E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene49047 | 0.854339 | 1.31E-61 | -1.69E-46 |
| MS.gene052016 | MS.gene49047 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene49047 | 0.810876 | 9.27E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene49047 | 0.835918 | 1.27E-56 | -1.69E-46 |
| MS.gene052335 | MS.gene49047 | 0.834699 | 2.58E-56 | -1.69E-46 |
| MS.gene052342 | MS.gene49047 | 0.838726 | 2.42E-57 | -1.69E-46 |
| MS.gene052463 | MS.gene49047 | 0.828898 | 6.96E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene49047 | 0.821061 | 4.93E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene49047 | 0.804163 | 2.46E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene49047 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene49047 | 0.812069 | 5.10E-51 | -1.69E-46 |
| MS.gene053677 | MS.gene49047 | 0.813977 | 1.95E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene49047 | 0.804309 | 2.30E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene49047 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene49047 | 0.822213 | 2.67E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene49047 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene49047 | 0.834323 | 3.20E-56 | -1.69E-46 |
| MS.gene056285 | MS.gene49047 | 0.833558 | 4.98E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene49047 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene056752 | MS.gene49047 | 0.822764 | 1.99E-53 | -1.69E-46 |
| MS.gene056801 | MS.gene49047 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene49047 | 0.81975 | 9.86E-53 | -1.69E-46 |
| MS.gene058278 | MS.gene49047 | 0.806166 | 9.39E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene49047 | 0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene49047 | 0.813947 | 1.98E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene49047 | 0.816668 | 4.91E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene49047 | 0.841983 | 3.41E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene49047 | 0.833929 | 4.02E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene49047 | 0.804265 | 2.35E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene49047 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene49047 | 0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene49047 | 0.803311 | 3.70E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene49047 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene49047 | 0.826982 | 2.01E-54 | -1.69E-46 |
| MS.gene060869 | MS.gene49047 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene060870 | MS.gene49047 | 0.81373 | 2.21E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene49047 | 0.84382 | 1.11E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene49047 | 0.813213 | 2.87E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene49047 | 0.829937 | 3.89E-55 | -1.69E-46 |
| MS.gene061205 | MS.gene49047 | 0.801173 | 1.02E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49047.t1 | MTR_1g101440 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| MS.gene49047.t1 | MTR_0086s0010 | 63.333 | 360 | 100 | 7 | 1 | 333 | 1 | 355 | 7.59e-141 | 403 |
| MS.gene49047.t1 | MTR_4g102740 | 48.592 | 284 | 115 | 5 | 18 | 301 | 28 | 280 | 7.27e-77 | 237 |
| MS.gene49047.t1 | MTR_2g018860 | 45.070 | 213 | 114 | 1 | 17 | 229 | 25 | 234 | 4.05e-62 | 198 |
| MS.gene49047.t1 | MTR_7g069610 | 40.909 | 220 | 128 | 2 | 6 | 224 | 2 | 220 | 3.25e-52 | 172 |
| MS.gene49047.t1 | MTR_4g017810 | 45.455 | 187 | 102 | 0 | 39 | 225 | 19 | 205 | 2.44e-49 | 166 |
| MS.gene49047.t1 | MTR_2g018860 | 43.094 | 181 | 101 | 1 | 51 | 229 | 12 | 192 | 7.39e-45 | 152 |
| MS.gene49047.t1 | MTR_6g022020 | 39.815 | 108 | 61 | 1 | 21 | 128 | 37 | 140 | 4.98e-23 | 94.0 |
| MS.gene49047.t1 | MTR_6g022040 | 38.889 | 108 | 61 | 1 | 21 | 128 | 35 | 137 | 1.14e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49047.t1 | AT5G07220 | 51.471 | 340 | 121 | 9 | 1 | 333 | 1 | 303 | 1.22e-106 | 314 |
| MS.gene49047.t1 | AT5G52060 | 54.403 | 318 | 125 | 7 | 22 | 333 | 39 | 342 | 6.15e-103 | 306 |
| MS.gene49047.t1 | AT5G62100 | 48.649 | 333 | 121 | 7 | 1 | 332 | 1 | 284 | 1.51e-99 | 295 |
| MS.gene49047.t1 | AT5G62100 | 47.093 | 344 | 121 | 8 | 1 | 332 | 1 | 295 | 9.10e-96 | 286 |
| MS.gene49047.t1 | AT5G62100 | 57.767 | 206 | 77 | 2 | 1 | 206 | 1 | 196 | 2.36e-79 | 241 |
| MS.gene49047.t1 | AT5G62100 | 57.005 | 207 | 79 | 2 | 1 | 207 | 1 | 197 | 8.56e-79 | 240 |
| MS.gene49047.t1 | AT5G62100 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.31e-58 | 184 |
| MS.gene49047.t1 | AT5G62100 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.31e-58 | 184 |
| MS.gene49047.t1 | AT3G51780 | 40.367 | 218 | 113 | 3 | 22 | 225 | 10 | 224 | 7.83e-45 | 154 |
| MS.gene49047.t1 | AT5G14360 | 37.273 | 110 | 64 | 1 | 21 | 130 | 47 | 151 | 1.12e-21 | 90.5 |
| MS.gene49047.t1 | AT5G40630 | 35.455 | 110 | 68 | 2 | 21 | 130 | 55 | 161 | 2.64e-20 | 86.7 |
Find 82 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1.3:+69899329 | MS.gene49047:CDS |
| TCATAAATTACAACCAAGTT+TGG | 0.308165 | 1.3:+69901210 | MS.gene49047:CDS |
| AAGTTGTAGTTACTACAAAA+TGG | 0.317039 | 1.3:+69901317 | MS.gene49047:CDS |
| CAACTAGAAGGCATGTCTAT+TGG | 0.328595 | 1.3:+69901184 | MS.gene49047:CDS |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1.3:+69899894 | MS.gene49047:CDS |
| CTGAAAATTAAGAATTCTAA+TGG | 0.350736 | 1.3:+69901103 | MS.gene49047:CDS |
| TTGGAAGTAGATAGGCTTGC+AGG | 0.354563 | 1.3:+69900113 | MS.gene49047:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1.3:-69899291 | None:intergenic |
| GCTGAAGTGACAGGAATTAA+TGG | 0.377943 | 1.3:-69901361 | None:intergenic |
| AACTAGAAGGCATGTCTATT+GGG | 0.380751 | 1.3:+69901185 | MS.gene49047:CDS |
| CCTTCTAGTTGCTCATCAAT+TGG | 0.382641 | 1.3:-69901172 | None:intergenic |
| CAGTTCATCCCAAGTTCAAA+TGG | 0.385056 | 1.3:+69901413 | MS.gene49047:CDS |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1.3:+69899969 | MS.gene49047:CDS |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1.3:-69899231 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1.3:+69899319 | MS.gene49047:CDS |
| AGTAGATAGGCTTGCAGGGC+AGG | 0.406809 | 1.3:+69900118 | MS.gene49047:CDS |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1.3:-69900029 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1.3:+69899374 | MS.gene49047:CDS |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1.3:+69899226 | MS.gene49047:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1.3:+69901075 | MS.gene49047:CDS |
| AAATTAGCTTGGAAGTAGAT+AGG | 0.412929 | 1.3:+69900105 | MS.gene49047:CDS |
| GAAGTGTTCCCATTTGAACT+TGG | 0.421460 | 1.3:-69901422 | None:intergenic |
| CCAATTGATGAGCAACTAGA+AGG | 0.428546 | 1.3:+69901172 | MS.gene49047:CDS |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1.3:+69899995 | MS.gene49047:CDS |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1.3:+69899197 | MS.gene49047:CDS |
| TGTGATTGTTGCTCCAAACT+TGG | 0.451240 | 1.3:-69901223 | None:intergenic |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1.3:-69899230 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1.3:+69900001 | MS.gene49047:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1.3:+69899256 | MS.gene49047:CDS |
| GCTTAAGTTGGATGGTATAG+TGG | 0.470152 | 1.3:+69900316 | MS.gene49047:CDS |
| ATCTATTTCAGAAATTAGCT+TGG | 0.470708 | 1.3:+69900094 | MS.gene49047:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1.3:-69899323 | None:intergenic |
| TGCTCAAGAGAAGAGGTACT+TGG | 0.472792 | 1.3:+69900034 | MS.gene49047:CDS |
| GATGAATCAGTTGCTTAAGT+TGG | 0.489833 | 1.3:+69900304 | MS.gene49047:CDS |
| AGTTGTAGTTACTACAAAAT+GGG | 0.490238 | 1.3:+69901318 | MS.gene49047:CDS |
| CAATCACAAAGGAACTCAAA+CGG | 0.493312 | 1.3:+69901238 | MS.gene49047:CDS |
| GGGATGAACTGAATTATTAG+TGG | 0.493980 | 1.3:-69901401 | None:intergenic |
| AATCACAAAGGAACTCAAAC+GGG | 0.496767 | 1.3:+69901239 | MS.gene49047:CDS |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1.3:-69899263 | None:intergenic |
| AAGTGTTCCCATTTGAACTT+GGG | 0.507977 | 1.3:-69901421 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1.3:+69899205 | MS.gene49047:CDS |
| AGTTCATCCCAAGTTCAAAT+GGG | 0.515662 | 1.3:+69901414 | MS.gene49047:CDS |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1.3:-69899357 | None:intergenic |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1.3:-69899904 | None:intergenic |
| AATCAGTTGCTTAAGTTGGA+TGG | 0.521756 | 1.3:+69900308 | MS.gene49047:CDS |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1.3:+69900324 | MS.gene49047:CDS |
| TCTAGTTGCTCATCAATTGG+AGG | 0.528067 | 1.3:-69901169 | None:intergenic |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1.3:+69899885 | MS.gene49047:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1.3:-69899286 | None:intergenic |
| CTCGAAACAATAATTAGTAA+AGG | 0.528826 | 1.3:+69900236 | MS.gene49047:CDS |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1.3:+69899231 | MS.gene49047:CDS |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1.3:-69899320 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1.3:+69899292 | MS.gene49047:CDS |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1.3:+69899950 | MS.gene49047:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1.3:+69899245 | MS.gene49047:CDS |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1.3:-69899909 | None:intergenic |
| GATGAGGATGCTGAAGTGAC+AGG | 0.550910 | 1.3:-69901370 | None:intergenic |
| GAAACAATAATTAGTAAAGG+TGG | 0.554611 | 1.3:+69900239 | MS.gene49047:CDS |
| TGGAAGTAGATAGGCTTGCA+GGG | 0.562410 | 1.3:+69900114 | MS.gene49047:CDS |
| AAACAATAATTAGTAAAGGT+GGG | 0.565385 | 1.3:+69900240 | MS.gene49047:CDS |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1.3:+69900323 | MS.gene49047:CDS |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1.3:+69900325 | MS.gene49047:CDS |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1.3:-69899236 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1.3:+69900352 | MS.gene49047:CDS |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1.3:+69900004 | MS.gene49047:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1.3:-69899354 | None:intergenic |
| TCTGAGGTAGAATTCGTAGA+GGG | 0.608688 | 1.3:-69901295 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1.3:+69900027 | MS.gene49047:CDS |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1.3:+69899895 | MS.gene49047:CDS |
| TGTAGTAACTACAACTTCTG+AGG | 0.617406 | 1.3:-69901311 | None:intergenic |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1.3:-69899317 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1.3:+69899221 | MS.gene49047:CDS |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1.3:+69899232 | MS.gene49047:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.640605 | 1.3:+69901106 | MS.gene49047:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1.3:+69900342 | MS.gene49047:CDS |
| TTCTGAGGTAGAATTCGTAG+AGG | 0.661653 | 1.3:-69901296 | None:intergenic |
| ATTAGTGGATGAGCTTGATG+AGG | 0.662225 | 1.3:-69901386 | None:intergenic |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1.3:+69899200 | MS.gene49047:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1.3:+69899280 | MS.gene49047:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1.3:+69899248 | MS.gene49047:CDS |
| GTTTGGAGCAACAATCACAA+AGG | 0.714476 | 1.3:+69901227 | MS.gene49047:CDS |
| GAAGTGACAGGAATTAATGG+TGG | 0.757122 | 1.3:-69901358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATAAA+AGG | - | chr1.3:69899416-69899435 | None:intergenic | 0.0% |
| !! | TAATAATAATAATAATAAAA+GGG | - | chr1.3:69899415-69899434 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | - | chr1.3:69899413-69899432 | None:intergenic | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | - | chr1.3:69900555-69900574 | None:intergenic | 10.0% |
| !! | TAAAATTAAGTCATTTAAAA+TGG | - | chr1.3:69900654-69900673 | None:intergenic | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr1.3:69899635-69899654 | MS.gene49047:intron | 10.0% |
| !! | AAAAAATATAAAGATGGAAA+GGG | + | chr1.3:69900064-69900083 | MS.gene49047:CDS | 15.0% |
| !! | AAAAATTATGACATCTAATT+TGG | + | chr1.3:69900482-69900501 | MS.gene49047:intron | 15.0% |
| !! | AATGAGAAAAAATATAAAGA+TGG | + | chr1.3:69900058-69900077 | MS.gene49047:CDS | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | + | chr1.3:69900173-69900192 | MS.gene49047:intron | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | - | chr1.3:69900556-69900575 | None:intergenic | 15.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | - | chr1.3:69899412-69899431 | None:intergenic | 15.0% |
| !! | TATACATTAGTAAAAAAGTA+TGG | - | chr1.3:69899531-69899550 | None:intergenic | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | + | chr1.3:69900995-69901014 | MS.gene49047:intron | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | - | chr1.3:69899929-69899948 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | + | chr1.3:69900145-69900164 | MS.gene49047:intron | 15.0% |
| !! | AAAAATCAATCATTCGATAT+AGG | - | chr1.3:69899817-69899836 | None:intergenic | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | + | chr1.3:69901106-69901125 | MS.gene49047:CDS | 20.0% |
| !! | AAACAATAATTAGTAAAGGT+GGG | + | chr1.3:69900240-69900259 | MS.gene49047:CDS | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | - | chr1.3:69899411-69899430 | None:intergenic | 20.0% |
| !! | AATTATAGCATATAAGATGT+TGG | + | chr1.3:69900734-69900753 | MS.gene49047:intron | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | + | chr1.3:69899329-69899348 | MS.gene49047:CDS | 20.0% |
| !! | CTGAAAATTAAGAATTCTAA+TGG | + | chr1.3:69901103-69901122 | MS.gene49047:CDS | 20.0% |
| !! | GAAAAAATATAAAGATGGAA+AGG | + | chr1.3:69900063-69900082 | MS.gene49047:CDS | 20.0% |
| !! | GATTGAATAAATCATTTATC+TGG | + | chr1.3:69899770-69899789 | MS.gene49047:intron | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | + | chr1.3:69899995-69900014 | MS.gene49047:CDS | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | + | chr1.3:69901042-69901061 | MS.gene49047:intron | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | + | chr1.3:69899941-69899960 | MS.gene49047:CDS | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | + | chr1.3:69899940-69899959 | MS.gene49047:CDS | 20.0% |
| !!! | TTAAGTCATTTAAAATGGAA+CGG | - | chr1.3:69900649-69900668 | None:intergenic | 20.0% |
| ! | AAGTTGTAGTTACTACAAAA+TGG | + | chr1.3:69901317-69901336 | MS.gene49047:CDS | 25.0% |
| ! | AGTTGTAGTTACTACAAAAT+GGG | + | chr1.3:69901318-69901337 | MS.gene49047:CDS | 25.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | + | chr1.3:69900094-69900113 | MS.gene49047:CDS | 25.0% |
| ! | ATGAAAATAACATTTAGTCC+CGG | + | chr1.3:69900510-69900529 | MS.gene49047:intron | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | + | chr1.3:69900205-69900224 | MS.gene49047:intron | 25.0% |
| ! | CTCGAAACAATAATTAGTAA+AGG | + | chr1.3:69900236-69900255 | MS.gene49047:CDS | 25.0% |
| ! | GAAACAATAATTAGTAAAGG+TGG | + | chr1.3:69900239-69900258 | MS.gene49047:CDS | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | + | chr1.3:69899885-69899904 | MS.gene49047:CDS | 25.0% |
| ! | GATACTTAAGATCAAAATTG+TGG | + | chr1.3:69900814-69900833 | MS.gene49047:intron | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | + | chr1.3:69901023-69901042 | MS.gene49047:intron | 25.0% |
| ! | TCAACTGTGTCATATAATAT+AGG | + | chr1.3:69900856-69900875 | MS.gene49047:intron | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | - | chr1.3:69900429-69900448 | None:intergenic | 25.0% |
| ! | TCATAAATTACAACCAAGTT+TGG | + | chr1.3:69901210-69901229 | MS.gene49047:CDS | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | - | chr1.3:69899326-69899345 | None:intergenic | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | + | chr1.3:69900566-69900585 | MS.gene49047:intron | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | + | chr1.3:69901075-69901094 | MS.gene49047:CDS | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | + | chr1.3:69899852-69899871 | MS.gene49047:intron | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | - | chr1.3:69899926-69899945 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr1.3:69899472-69899491 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | - | chr1.3:69900439-69900458 | None:intergenic | 25.0% |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr1.3:69899490-69899509 | None:intergenic | 30.0% | |
| ATTAGTTCACAAGCAACATT+TGG | + | chr1.3:69899374-69899393 | MS.gene49047:CDS | 30.0% | |
| TAAATCAAAGTTAGTGGTGA+TGG | + | chr1.3:69900001-69900020 | MS.gene49047:CDS | 30.0% | |
| TGTCATATAATATAGGACGA+CGG | + | chr1.3:69900863-69900882 | MS.gene49047:intron | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | + | chr1.3:69900105-69900124 | MS.gene49047:CDS | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | - | chr1.3:69899360-69899379 | None:intergenic | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | + | chr1.3:69899863-69899882 | MS.gene49047:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | + | chr1.3:69899862-69899881 | MS.gene49047:intron | 30.0% |
| !! | TGATTAATGTTTGGTGTCAT+AGG | + | chr1.3:69899861-69899880 | MS.gene49047:intron | 30.0% |
| !! | TTTGTTGAGGCTTTTTCTTT+GGG | - | chr1.3:69901138-69901157 | None:intergenic | 30.0% |
| !! | TTTTGTTGAGGCTTTTTCTT+TGG | - | chr1.3:69901139-69901158 | None:intergenic | 30.0% |
| !!! | GACATGTATTTTGAAACAGA+GGG | + | chr1.3:69899697-69899716 | MS.gene49047:intron | 30.0% |
| !!! | GGCAATTTTACTTTTTGTTG+AGG | - | chr1.3:69901151-69901170 | None:intergenic | 30.0% |
| AACATTTAGTCCCGGAAAAA+CGG | + | chr1.3:69900518-69900537 | MS.gene49047:intron | 35.0% | |
| AAGAACGTGACGAATCATAA+TGG | + | chr1.3:69899197-69899216 | MS.gene49047:CDS | 35.0% | |
| AAGTGTTCCCATTTGAACTT+GGG | - | chr1.3:69901424-69901443 | None:intergenic | 35.0% | |
| AATCACAAAGGAACTCAAAC+GGG | + | chr1.3:69901239-69901258 | MS.gene49047:CDS | 35.0% | |
| AGTTCATCCCAAGTTCAAAT+GGG | + | chr1.3:69901414-69901433 | MS.gene49047:CDS | 35.0% | |
| ATATAATATAGGACGACGGA+GGG | + | chr1.3:69900867-69900886 | MS.gene49047:intron | 35.0% | |
| CAATCACAAAGGAACTCAAA+CGG | + | chr1.3:69901238-69901257 | MS.gene49047:CDS | 35.0% | |
| GATGAATCAGTTGCTTAAGT+TGG | + | chr1.3:69900304-69900323 | MS.gene49047:CDS | 35.0% | |
| GGGATGAACTGAATTATTAG+TGG | - | chr1.3:69901404-69901423 | None:intergenic | 35.0% | |
| TAAATTGCAGAGGAAAATGC+AGG | + | chr1.3:69900352-69900371 | MS.gene49047:CDS | 35.0% | |
| TGTAGTAACTACAACTTCTG+AGG | - | chr1.3:69901314-69901333 | None:intergenic | 35.0% | |
| ! | AACTAGAAGGCATGTCTATT+GGG | + | chr1.3:69901185-69901204 | MS.gene49047:CDS | 35.0% |
| ! | AAGGCATTTCTTGACATAGT+AGG | + | chr1.3:69899969-69899988 | MS.gene49047:CDS | 35.0% |
| !! | AATCAGTTGCTTAAGTTGGA+TGG | + | chr1.3:69900308-69900327 | MS.gene49047:CDS | 35.0% |
| !! | AATGTTGACTTCATGATAGG+TGG | - | chr1.3:69899357-69899376 | None:intergenic | 35.0% |
| !! | ACTAAGTTATCCCGTTTTTC+CGG | - | chr1.3:69900532-69900551 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+TGG | - | chr1.3:69899468-69899487 | None:intergenic | 35.0% |
| !!! | GGACATGTATTTTGAAACAG+AGG | + | chr1.3:69899696-69899715 | MS.gene49047:intron | 35.0% |
| AAAATGTTAACCGGTCCAAC+TGG | + | chr1.3:69899894-69899913 | MS.gene49047:CDS | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | + | chr1.3:69899950-69899969 | MS.gene49047:CDS | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | + | chr1.3:69899895-69899914 | MS.gene49047:CDS | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | + | chr1.3:69899200-69899219 | MS.gene49047:CDS | 40.0% | |
| ACATTTAGTCCCGGAAAAAC+GGG | + | chr1.3:69900519-69900538 | MS.gene49047:intron | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | - | chr1.3:69899323-69899342 | None:intergenic | 40.0% | |
| ATCCTATTGCTCAAGAGAAG+AGG | + | chr1.3:69900027-69900046 | MS.gene49047:CDS | 40.0% | |
| ATGGGGATGTTAAATTGCAG+AGG | + | chr1.3:69900342-69900361 | MS.gene49047:CDS | 40.0% | |
| CAGTTCATCCCAAGTTCAAA+TGG | + | chr1.3:69901413-69901432 | MS.gene49047:CDS | 40.0% | |
| CATATAATATAGGACGACGG+AGG | + | chr1.3:69900866-69900885 | MS.gene49047:intron | 40.0% | |
| CATATGTGAAGTGGTTGACT+TGG | + | chr1.3:69899675-69899694 | MS.gene49047:intron | 40.0% | |
| CCAATTGATGAGCAACTAGA+AGG | + | chr1.3:69901172-69901191 | MS.gene49047:CDS | 40.0% | |
| GAAGTGACAGGAATTAATGG+TGG | - | chr1.3:69901361-69901380 | None:intergenic | 40.0% | |
| GCTGAAGTGACAGGAATTAA+TGG | - | chr1.3:69901364-69901383 | None:intergenic | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | - | chr1.3:69900032-69900051 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | + | chr1.3:69899319-69899338 | MS.gene49047:CDS | 40.0% | |
| TCTAGTTGCTCATCAATTGG+AGG | - | chr1.3:69901172-69901191 | None:intergenic | 40.0% | |
| TGTGATTGTTGCTCCAAACT+TGG | - | chr1.3:69901226-69901245 | None:intergenic | 40.0% | |
| TTAACTCTAATTGTCGGTGG+AGG | - | chr1.3:69899320-69899339 | None:intergenic | 40.0% | |
| ! | ATTAGTGGATGAGCTTGATG+AGG | - | chr1.3:69901389-69901408 | None:intergenic | 40.0% |
| ! | CAACTAGAAGGCATGTCTAT+TGG | + | chr1.3:69901184-69901203 | MS.gene49047:CDS | 40.0% |
| ! | CCTTCTAGTTGCTCATCAAT+TGG | - | chr1.3:69901175-69901194 | None:intergenic | 40.0% |
| ! | GAAGTGTTCCCATTTGAACT+TGG | - | chr1.3:69901425-69901444 | None:intergenic | 40.0% |
| ! | GACGAATCATAATGGAGGTT+CGG | + | chr1.3:69899205-69899224 | MS.gene49047:CDS | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr1.3:69899666-69899685 | MS.gene49047:intron | 40.0% |
| ! | GTTTGGAGCAACAATCACAA+AGG | + | chr1.3:69901227-69901246 | MS.gene49047:CDS | 40.0% |
| ! | TCTGAGGTAGAATTCGTAGA+GGG | - | chr1.3:69901298-69901317 | None:intergenic | 40.0% |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | + | chr1.3:69900004-69900023 | MS.gene49047:CDS | 40.0% |
| !! | CTAAGTTATCCCGTTTTTCC+GGG | - | chr1.3:69900531-69900550 | None:intergenic | 40.0% |
| !! | GCTTAAGTTGGATGGTATAG+TGG | + | chr1.3:69900316-69900335 | MS.gene49047:CDS | 40.0% |
| !! | TTCTGAGGTAGAATTCGTAG+AGG | - | chr1.3:69901299-69901318 | None:intergenic | 40.0% |
| GTGTCCACTTTAGGTCACAA+GGG | + | chr1.3:69900575-69900594 | MS.gene49047:intron | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | + | chr1.3:69900114-69900133 | MS.gene49047:CDS | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | + | chr1.3:69900324-69900343 | MS.gene49047:CDS | 45.0% | |
| TGTGTCCACTTTAGGTCACA+AGG | + | chr1.3:69900574-69900593 | MS.gene49047:intron | 45.0% | |
| TTGGAAGTAGATAGGCTTGC+AGG | + | chr1.3:69900113-69900132 | MS.gene49047:CDS | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | + | chr1.3:69900323-69900342 | MS.gene49047:CDS | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | - | chr1.3:69900582-69900601 | None:intergenic | 45.0% | |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | + | chr1.3:69900034-69900053 | MS.gene49047:CDS | 45.0% |
| !! | AATAATAATAATAATAAAAG+GGG | - | chr1.3:69899414-69899433 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | + | chr1.3:69899935-69899954 | MS.gene49047:CDS | 5.0% |
| !!! | TAAATTTTTTTTTTATGATA+AGG | + | chr1.3:69900141-69900160 | MS.gene49047:intron | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | - | chr1.3:69899935-69899954 | None:intergenic | 5.0% |
| ATCTCCCACTCCAAACCTCT+AGG | - | chr1.3:69899239-69899258 | None:intergenic | 50.0% | |
| CACTCCAAACCTCTAGGTTC+GGG | - | chr1.3:69899233-69899252 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | - | chr1.3:69899234-69899253 | None:intergenic | 50.0% | |
| CTTAGACTCGGATCGAGACT+CGG | + | chr1.3:69899292-69899311 | MS.gene49047:CDS | 50.0% | |
| GATGAGGATGCTGAAGTGAC+AGG | - | chr1.3:69901373-69901392 | None:intergenic | 50.0% | |
| GGATGGTATAGTGGCTGATG+GGG | + | chr1.3:69900325-69900344 | MS.gene49047:CDS | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | + | chr1.3:69899280-69899299 | MS.gene49047:CDS | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | + | chr1.3:69899232-69899251 | MS.gene49047:CDS | 50.0% |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | - | chr1.3:69899289-69899308 | None:intergenic | 50.0% |
| ! | GTGGATTGACAGACGTGACA+GGG | + | chr1.3:69900833-69900852 | MS.gene49047:intron | 50.0% |
| ! | TGTGGATTGACAGACGTGAC+AGG | + | chr1.3:69900832-69900851 | MS.gene49047:intron | 50.0% |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | - | chr1.3:69899912-69899931 | None:intergenic | 50.0% |
| AGTAGATAGGCTTGCAGGGC+AGG | + | chr1.3:69900118-69900137 | MS.gene49047:CDS | 55.0% | |
| CCGAACCTAGAGGTTTGGAG+TGG | + | chr1.3:69899231-69899250 | MS.gene49047:CDS | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | - | chr1.3:69899294-69899313 | None:intergenic | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | - | chr1.3:69899266-69899285 | None:intergenic | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | + | chr1.3:69899256-69899275 | MS.gene49047:CDS | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | + | chr1.3:69899226-69899245 | MS.gene49047:CDS | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | - | chr1.3:69899907-69899926 | None:intergenic | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | + | chr1.3:69899245-69899264 | MS.gene49047:CDS | 55.0% | |
| GAGTGGGAGATGAGACCAGG+AGG | + | chr1.3:69899248-69899267 | MS.gene49047:CDS | 60.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | + | chr1.3:69899221-69899240 | MS.gene49047:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69899185 | 69901450 | 69899185 | ID=MS.gene49047 |
| chr1.3 | mRNA | 69899185 | 69901450 | 69899185 | ID=MS.gene49047.t1;Parent=MS.gene49047 |
| chr1.3 | exon | 69899185 | 69899395 | 69899185 | ID=MS.gene49047.t1.exon1;Parent=MS.gene49047.t1 |
| chr1.3 | CDS | 69899185 | 69899395 | 69899185 | ID=cds.MS.gene49047.t1;Parent=MS.gene49047.t1 |
| chr1.3 | exon | 69899883 | 69900139 | 69899883 | ID=MS.gene49047.t1.exon2;Parent=MS.gene49047.t1 |
| chr1.3 | CDS | 69899883 | 69900139 | 69899883 | ID=cds.MS.gene49047.t1;Parent=MS.gene49047.t1 |
| chr1.3 | exon | 69900227 | 69900373 | 69900227 | ID=MS.gene49047.t1.exon3;Parent=MS.gene49047.t1 |
| chr1.3 | CDS | 69900227 | 69900373 | 69900227 | ID=cds.MS.gene49047.t1;Parent=MS.gene49047.t1 |
| chr1.3 | exon | 69901064 | 69901450 | 69901064 | ID=MS.gene49047.t1.exon4;Parent=MS.gene49047.t1 |
| chr1.3 | CDS | 69901064 | 69901450 | 69901064 | ID=cds.MS.gene49047.t1;Parent=MS.gene49047.t1 |
| Gene Sequence |
| Protein sequence |
