Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49763.t1 | RHN43232.1 | 95.3 | 316 | 12 | 1 | 1 | 313 | 1 | 316 | 1.10E-169 | 605.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49763.t1 | Q9M2E2 | 40.1 | 297 | 144 | 7 | 39 | 312 | 9 | 294 | 3.0e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49763.t1 | A0A396GQ34 | 95.3 | 316 | 12 | 1 | 1 | 313 | 1 | 316 | 7.6e-170 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49763 | MS.gene58347 | PPI |
| MS.gene49763 | MS.gene58343 | PPI |
| MS.gene49763 | MS.gene58270 | PPI |
| MS.gene49763 | MS.gene26577 | PPI |
| MS.gene49763 | MS.gene58348 | PPI |
| MS.gene49763 | MS.gene39579 | PPI |
| MS.gene57558 | MS.gene49763 | PPI |
| MS.gene49763 | MS.gene019536 | PPI |
| MS.gene49763 | MS.gene57559 | PPI |
| MS.gene49763 | MS.gene47525 | PPI |
| MS.gene49763 | MS.gene019530 | PPI |
| MS.gene49763 | MS.gene58267 | PPI |
| MS.gene49763 | MS.gene70985 | PPI |
| MS.gene49763 | MS.gene57560 | PPI |
| MS.gene49763 | MS.gene019532 | PPI |
| MS.gene49763 | MS.gene019531 | PPI |
| MS.gene49763 | MS.gene019537 | PPI |
| MS.gene49763 | MS.gene58344 | PPI |
| MS.gene49763 | MS.gene019540 | PPI |
| MS.gene49763 | MS.gene019527 | PPI |
| MS.gene49763 | MS.gene58272 | PPI |
| MS.gene49763 | MS.gene58269 | PPI |
| MS.gene49763 | MS.gene038616 | PPI |
| MS.gene49763 | MS.gene57563 | PPI |
| MS.gene49763 | MS.gene008719 | PPI |
| MS.gene49763 | MS.gene57564 | PPI |
| MS.gene49763 | MS.gene57562 | PPI |
| MS.gene49763 | MS.gene58346 | PPI |
| MS.gene49763 | MS.gene009163 | PPI |
| MS.gene49763 | MS.gene58268 | PPI |
| MS.gene49763 | MS.gene58271 | PPI |
| MS.gene49763 | MS.gene019535 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49763.t1 | MTR_8g096060 | 96.166 | 313 | 9 | 1 | 1 | 313 | 1 | 310 | 0.0 | 617 |
| MS.gene49763.t1 | MTR_3g098470 | 83.706 | 313 | 49 | 1 | 1 | 313 | 1 | 311 | 0.0 | 560 |
| MS.gene49763.t1 | MTR_1g031180 | 74.161 | 298 | 77 | 0 | 16 | 313 | 19 | 316 | 1.18e-172 | 481 |
| MS.gene49763.t1 | MTR_4g087460 | 41.017 | 295 | 156 | 8 | 31 | 313 | 16 | 304 | 2.65e-70 | 221 |
| MS.gene49763.t1 | MTR_8g032000 | 38.644 | 295 | 144 | 5 | 39 | 307 | 9 | 292 | 1.52e-63 | 203 |
| MS.gene49763.t1 | MTR_8g032010 | 38.047 | 297 | 147 | 6 | 35 | 305 | 5 | 290 | 1.96e-62 | 200 |
| MS.gene49763.t1 | MTR_8g031960 | 39.000 | 300 | 145 | 6 | 38 | 311 | 9 | 296 | 7.80e-62 | 199 |
| MS.gene49763.t1 | MTR_8g031980 | 37.954 | 303 | 150 | 6 | 36 | 312 | 6 | 296 | 1.55e-61 | 197 |
| MS.gene49763.t1 | MTR_8g031990 | 36.393 | 305 | 157 | 5 | 35 | 313 | 5 | 298 | 8.32e-61 | 196 |
| MS.gene49763.t1 | MTR_3g079320 | 37.748 | 302 | 149 | 5 | 33 | 305 | 7 | 298 | 1.49e-60 | 196 |
| MS.gene49763.t1 | MTR_7g076660 | 39.446 | 289 | 150 | 6 | 39 | 313 | 9 | 286 | 2.05e-60 | 194 |
| MS.gene49763.t1 | MTR_7g076660 | 39.446 | 289 | 150 | 6 | 39 | 313 | 10 | 287 | 2.59e-60 | 194 |
| MS.gene49763.t1 | MTR_7g076655 | 39.792 | 289 | 149 | 6 | 39 | 313 | 9 | 286 | 5.53e-60 | 193 |
| MS.gene49763.t1 | MTR_8g031910 | 40.893 | 291 | 144 | 6 | 34 | 308 | 4 | 282 | 1.47e-59 | 192 |
| MS.gene49763.t1 | MTR_8g032020 | 37.417 | 302 | 151 | 6 | 39 | 313 | 10 | 300 | 1.72e-58 | 190 |
| MS.gene49763.t1 | MTR_5g062280 | 38.158 | 304 | 152 | 6 | 34 | 313 | 4 | 295 | 1.57e-57 | 187 |
| MS.gene49763.t1 | MTR_8g031940 | 39.796 | 294 | 139 | 8 | 39 | 305 | 9 | 291 | 5.57e-57 | 186 |
| MS.gene49763.t1 | MTR_8g031900 | 35.135 | 296 | 160 | 5 | 39 | 313 | 9 | 293 | 1.84e-56 | 184 |
| MS.gene49763.t1 | MTR_8g031630 | 37.542 | 301 | 150 | 9 | 39 | 313 | 9 | 297 | 9.78e-56 | 183 |
| MS.gene49763.t1 | MTR_8g031610 | 37.333 | 300 | 151 | 8 | 39 | 313 | 7 | 294 | 6.56e-55 | 181 |
| MS.gene49763.t1 | MTR_8g031650 | 37.333 | 300 | 150 | 9 | 40 | 313 | 104 | 391 | 6.04e-54 | 181 |
| MS.gene49763.t1 | MTR_8g031650 | 37.209 | 129 | 70 | 4 | 179 | 302 | 2 | 124 | 2.33e-14 | 73.6 |
| MS.gene49763.t1 | MTR_8g031600 | 36.928 | 306 | 150 | 7 | 37 | 313 | 7 | 298 | 3.56e-53 | 176 |
| MS.gene49763.t1 | MTR_8g031650 | 37.333 | 300 | 150 | 9 | 40 | 313 | 270 | 557 | 1.18e-52 | 181 |
| MS.gene49763.t1 | MTR_8g031650 | 38.225 | 293 | 141 | 9 | 39 | 302 | 9 | 290 | 2.44e-51 | 178 |
| MS.gene49763.t1 | MTR_7g076660 | 37.868 | 272 | 144 | 6 | 56 | 313 | 2 | 262 | 6.01e-52 | 172 |
| MS.gene49763.t1 | MTR_7g076665 | 35.117 | 299 | 158 | 6 | 39 | 313 | 9 | 295 | 2.61e-49 | 166 |
| MS.gene49763.t1 | MTR_7g106800 | 35.816 | 282 | 132 | 7 | 39 | 313 | 11 | 250 | 1.61e-46 | 158 |
| MS.gene49763.t1 | MTR_8g031850 | 32.130 | 277 | 156 | 5 | 39 | 313 | 9 | 255 | 2.78e-43 | 149 |
| MS.gene49763.t1 | MTR_5g083430 | 36.224 | 196 | 113 | 4 | 118 | 313 | 1 | 184 | 4.62e-34 | 123 |
| MS.gene49763.t1 | MTR_8g032030 | 39.665 | 179 | 80 | 5 | 36 | 187 | 6 | 183 | 1.94e-31 | 117 |
| MS.gene49763.t1 | MTR_4g105310 | 27.211 | 294 | 156 | 11 | 39 | 310 | 51 | 308 | 4.31e-14 | 72.4 |
| MS.gene49763.t1 | MTR_3g077410 | 26.531 | 294 | 158 | 12 | 39 | 310 | 40 | 297 | 3.60e-13 | 69.3 |
| MS.gene49763.t1 | MTR_4g105310 | 28.926 | 242 | 129 | 8 | 39 | 273 | 51 | 256 | 9.17e-13 | 67.8 |
| MS.gene49763.t1 | MTR_3g068070 | 35.374 | 147 | 86 | 4 | 31 | 172 | 12 | 154 | 1.40e-12 | 67.0 |
| MS.gene49763.t1 | MTR_8g442750 | 31.973 | 147 | 93 | 2 | 35 | 174 | 15 | 161 | 1.61e-11 | 64.3 |
| MS.gene49763.t1 | MTR_7g063390 | 32.886 | 149 | 95 | 4 | 30 | 175 | 12 | 158 | 7.97e-11 | 62.0 |
| MS.gene49763.t1 | MTR_7g063360 | 36.601 | 153 | 84 | 7 | 30 | 175 | 12 | 158 | 9.36e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49763.t1 | AT5G51030 | 70.607 | 313 | 92 | 0 | 1 | 313 | 2 | 314 | 1.45e-175 | 488 |
| MS.gene49763.t1 | AT5G61830 | 68.354 | 316 | 97 | 2 | 1 | 313 | 1 | 316 | 1.71e-161 | 452 |
| MS.gene49763.t1 | AT5G61830 | 68.354 | 316 | 97 | 2 | 1 | 313 | 1 | 316 | 1.71e-161 | 452 |
| MS.gene49763.t1 | AT3G59710 | 42.807 | 285 | 148 | 6 | 25 | 305 | 7 | 280 | 2.21e-76 | 236 |
| MS.gene49763.t1 | AT3G59710 | 42.908 | 282 | 146 | 6 | 28 | 305 | 39 | 309 | 5.16e-75 | 233 |
| MS.gene49763.t1 | AT3G59710 | 42.254 | 284 | 149 | 6 | 26 | 305 | 18 | 290 | 9.07e-74 | 229 |
| MS.gene49763.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 9 | 294 | 4.73e-62 | 199 |
| MS.gene49763.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 16 | 301 | 1.08e-61 | 198 |
| MS.gene49763.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 40 | 325 | 1.92e-61 | 198 |
| MS.gene49763.t1 | AT2G24190 | 39.057 | 297 | 147 | 7 | 39 | 312 | 9 | 294 | 4.55e-61 | 196 |
| MS.gene49763.t1 | AT2G24190 | 39.057 | 297 | 147 | 7 | 39 | 312 | 14 | 299 | 6.17e-61 | 196 |
| MS.gene49763.t1 | AT1G01800 | 37.542 | 301 | 152 | 7 | 38 | 313 | 6 | 295 | 2.16e-57 | 187 |
| MS.gene49763.t1 | AT1G01800 | 37.705 | 183 | 103 | 3 | 131 | 313 | 89 | 260 | 2.79e-32 | 120 |
| MS.gene49763.t1 | AT5G50130 | 28.296 | 311 | 160 | 15 | 27 | 312 | 27 | 299 | 4.64e-19 | 86.7 |
| MS.gene49763.t1 | AT5G50130 | 29.054 | 296 | 148 | 15 | 41 | 312 | 8 | 265 | 3.39e-17 | 80.9 |
| MS.gene49763.t1 | AT5G50130 | 28.956 | 297 | 148 | 15 | 41 | 312 | 8 | 266 | 4.50e-17 | 80.5 |
| MS.gene49763.t1 | AT5G50130 | 29.297 | 256 | 134 | 12 | 27 | 273 | 27 | 244 | 4.81e-17 | 79.7 |
| MS.gene49763.t1 | AT5G50130 | 29.183 | 257 | 134 | 12 | 27 | 273 | 27 | 245 | 5.55e-17 | 79.7 |
| MS.gene49763.t1 | AT5G50130 | 29.297 | 256 | 134 | 12 | 27 | 273 | 27 | 244 | 2.21e-16 | 79.0 |
| MS.gene49763.t1 | AT5G50130 | 29.183 | 257 | 134 | 12 | 27 | 273 | 27 | 245 | 2.84e-16 | 78.6 |
| MS.gene49763.t1 | AT4G23420 | 29.352 | 293 | 145 | 11 | 39 | 307 | 49 | 303 | 3.34e-15 | 75.5 |
| MS.gene49763.t1 | AT4G23420 | 29.010 | 293 | 146 | 11 | 39 | 307 | 32 | 286 | 9.14e-15 | 73.9 |
| MS.gene49763.t1 | AT4G23420 | 29.010 | 293 | 146 | 11 | 39 | 307 | 32 | 286 | 9.14e-15 | 73.9 |
| MS.gene49763.t1 | AT5G50130 | 30.165 | 242 | 122 | 12 | 41 | 273 | 8 | 211 | 2.85e-14 | 72.4 |
| MS.gene49763.t1 | AT5G50130 | 30.041 | 243 | 122 | 12 | 41 | 273 | 8 | 212 | 3.91e-14 | 72.0 |
| MS.gene49763.t1 | AT4G23430 | 26.621 | 293 | 151 | 11 | 39 | 307 | 32 | 284 | 6.16e-12 | 65.9 |
| MS.gene49763.t1 | AT4G23430 | 27.304 | 293 | 151 | 11 | 39 | 307 | 32 | 286 | 6.54e-12 | 65.9 |
| MS.gene49763.t1 | AT4G23420 | 35.374 | 147 | 82 | 4 | 39 | 176 | 32 | 174 | 1.86e-11 | 63.9 |
| MS.gene49763.t1 | AT4G23420 | 35.374 | 147 | 82 | 4 | 39 | 176 | 32 | 174 | 2.14e-11 | 63.5 |
| MS.gene49763.t1 | AT2G29350 | 30.233 | 172 | 108 | 3 | 28 | 187 | 9 | 180 | 6.43e-11 | 61.6 |
| MS.gene49763.t1 | AT2G29350 | 30.769 | 169 | 105 | 3 | 28 | 184 | 9 | 177 | 6.97e-11 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGGATTAATTTCAATTT+TGG | 0.065690 | 4.4:-7293207 | MS.gene49763:CDS |
| GTTATTGATACAAATTATTT+TGG | 0.142059 | 4.4:-7293153 | MS.gene49763:CDS |
| TAATGCTTATACAAGATTTA+TGG | 0.146212 | 4.4:-7292704 | MS.gene49763:CDS |
| TAATTGCTTGTTCAGGAATA+AGG | 0.220393 | 4.4:+7292542 | None:intergenic |
| CCAATTCTCTGAGTGGTTAA+AGG | 0.248625 | 4.4:-7293393 | MS.gene49763:CDS |
| GCAGCGGAAGCCTTCATTAA+TGG | 0.259600 | 4.4:+7293102 | None:intergenic |
| CTATGGTGGCTTAAATATTC+TGG | 0.279719 | 4.4:-7293366 | MS.gene49763:intron |
| CCTTTAACCACTCAGAGAAT+TGG | 0.295244 | 4.4:+7293393 | None:intergenic |
| ATTCCTGAACAAGCAATTAC+AGG | 0.309492 | 4.4:-7292538 | MS.gene49763:CDS |
| CGTATATAGGTGGTGGTCTA+AGG | 0.312809 | 4.4:-7293612 | MS.gene49763:intron |
| ACCGGTGGAAATAGAGGAAT+TGG | 0.315043 | 4.4:-7293572 | MS.gene49763:CDS |
| GTTGAGGATGGTGCTGATAC+TGG | 0.341232 | 4.4:-7292577 | MS.gene49763:CDS |
| TTTCCTGTAATTGCTTGTTC+AGG | 0.345287 | 4.4:+7292535 | None:intergenic |
| GAAACAATTGCTGTGGTTAC+CGG | 0.352211 | 4.4:-7293590 | MS.gene49763:CDS |
| TCGCGTCTAGGTCGACTAAA+TGG | 0.361109 | 4.4:-7293054 | MS.gene49763:CDS |
| TGTTGGCGTTGAATCAATTA+AGG | 0.363055 | 4.4:-7293483 | MS.gene49763:CDS |
| AACCTTTGGTGATCAGAATA+AGG | 0.364854 | 4.4:+7294017 | None:intergenic |
| CATAGCTTCAATCATACGTT+TGG | 0.371958 | 4.4:+7293128 | None:intergenic |
| TGGGTTAAAACAGCTCTAAC+AGG | 0.375689 | 4.4:-7292619 | MS.gene49763:CDS |
| CTTTAACCACTCAGAGAATT+GGG | 0.379720 | 4.4:+7293394 | None:intergenic |
| TTTATTAATTGTTATTGTCC+TGG | 0.406931 | 4.4:-7292643 | MS.gene49763:CDS |
| AATTGCTTGTTCAGGAATAA+GGG | 0.408591 | 4.4:+7292543 | None:intergenic |
| TAATTGTTATTGTCCTGGTT+GGG | 0.411270 | 4.4:-7292638 | MS.gene49763:CDS |
| ATGGTGCTGATACTGGAGTT+TGG | 0.414592 | 4.4:-7292570 | MS.gene49763:CDS |
| TTAATTGTTATTGTCCTGGT+TGG | 0.424909 | 4.4:-7292639 | MS.gene49763:CDS |
| TTAATGAAGGCTTCCGCTGC+TGG | 0.440633 | 4.4:-7293099 | MS.gene49763:CDS |
| AGAGGATGGAACTTGGAAAT+CGG | 0.442067 | 4.4:-7292776 | MS.gene49763:CDS |
| TCAAGACAACTTGCTGATCA+TGG | 0.448076 | 4.4:-7293539 | MS.gene49763:CDS |
| GAGTGGTTAAAGGAAAACTA+TGG | 0.450433 | 4.4:-7293383 | MS.gene49763:CDS |
| ATCAAGTAGAGGATGGAACT+TGG | 0.475460 | 4.4:-7292783 | MS.gene49763:CDS |
| AGCTATGATTCCATTAATGA+AGG | 0.476938 | 4.4:-7293112 | MS.gene49763:CDS |
| GAGGATGGAACTTGGAAATC+GGG | 0.486517 | 4.4:-7292775 | MS.gene49763:CDS |
| TTCAGTTGAAAATGCTCATA+CGG | 0.503882 | 4.4:-7293175 | MS.gene49763:CDS |
| CTTTCAGAGGAACTTATTGA+CGG | 0.507419 | 4.4:-7292826 | MS.gene49763:CDS |
| TATTTGCAGGTAAACAATGC+AGG | 0.514024 | 4.4:-7293225 | MS.gene49763:intron |
| GTAAATGTTAGCTCGCGTCT+AGG | 0.519334 | 4.4:-7293066 | MS.gene49763:CDS |
| CCGGTGGAAATAGAGGAATT+GGG | 0.523137 | 4.4:-7293571 | MS.gene49763:CDS |
| ACAGCTCTAACAGGTTATGC+AGG | 0.530819 | 4.4:-7292610 | MS.gene49763:CDS |
| TTCCTTATTCTGATCACCAA+AGG | 0.539751 | 4.4:-7294019 | MS.gene49763:intron |
| CCCAATTCCTCTATTTCCAC+CGG | 0.540422 | 4.4:+7293571 | None:intergenic |
| GAGTAGTCGGTAAATATTCG+AGG | 0.558560 | 4.4:+7292745 | None:intergenic |
| TTTCTACATCAAGTAGAGGA+TGG | 0.561046 | 4.4:-7292790 | MS.gene49763:CDS |
| GAACTTGGAAATCGGGAGGA+TGG | 0.561877 | 4.4:-7292768 | MS.gene49763:CDS |
| TCAATTAAGGTCTTGCAAGA+AGG | 0.563494 | 4.4:-7293470 | MS.gene49763:CDS |
| TGCAGGAAGTGTCTCAGTTG+AGG | 0.575602 | 4.4:-7292593 | MS.gene49763:CDS |
| ATTTGCAGGTAAACAATGCA+GGG | 0.577061 | 4.4:-7293224 | MS.gene49763:intron |
| GTGGTTACCGGTGGAAATAG+AGG | 0.582403 | 4.4:-7293578 | MS.gene49763:CDS |
| TAGTTTCGACAACGAGTAGT+CGG | 0.587214 | 4.4:+7292732 | None:intergenic |
| CCACTCAGAGAATTGGGTGA+TGG | 0.590667 | 4.4:+7293400 | None:intergenic |
| ATGAAGGCTTCCGCTGCTGG+TGG | 0.593984 | 4.4:-7293096 | MS.gene49763:CDS |
| ATTAAGGTCTTGCAAGAAGG+TGG | 0.604917 | 4.4:-7293467 | MS.gene49763:CDS |
| TACAATACGACCACCAGCAG+CGG | 0.610026 | 4.4:+7293086 | None:intergenic |
| AAACTTTCAGATAGACCTGA+GGG | 0.619922 | 4.4:-7292676 | MS.gene49763:CDS |
| ACAACAAGAGATGCTAGTGT+TGG | 0.621330 | 4.4:-7293500 | MS.gene49763:CDS |
| GTCTAAGGAAACAATTGCTG+TGG | 0.624623 | 4.4:-7293597 | MS.gene49763:CDS |
| CAATGTGGATAATCTTTCAG+AGG | 0.637147 | 4.4:-7292839 | MS.gene49763:CDS |
| ACAATTGCTGTGGTTACCGG+TGG | 0.637799 | 4.4:-7293587 | MS.gene49763:CDS |
| GGAAGTGTCTCAGTTGAGGA+TGG | 0.651463 | 4.4:-7292589 | MS.gene49763:CDS |
| TTGGTGATCAGAATAAGGAA+TGG | 0.653400 | 4.4:+7294022 | None:intergenic |
| GATGGAACTTGGAAATCGGG+AGG | 0.664292 | 4.4:-7292772 | MS.gene49763:CDS |
| CCATCACCCAATTCTCTGAG+TGG | 0.664499 | 4.4:-7293400 | MS.gene49763:CDS |
| TGGTTAAAGGAAAACTATGG+TGG | 0.666602 | 4.4:-7293380 | MS.gene49763:CDS |
| GCAAGAAGGTGGTCTCGATG+TGG | 0.670613 | 4.4:-7293456 | MS.gene49763:CDS |
| GAAACTTTCAGATAGACCTG+AGG | 0.686755 | 4.4:-7292677 | MS.gene49763:CDS |
| GAGAGAGCAATTAAGCAATG+TGG | 0.690143 | 4.4:-7292854 | MS.gene49763:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATCATTTATTGA+TGG | - | chr4.4:7292889-7292908 | MS.gene49763:intron | 10.0% |
| !!! | CATGTGTTAAATTTAATTTT+GGG | - | chr4.4:7292943-7292962 | MS.gene49763:intron | 15.0% |
| !!! | GTTATTGATACAAATTATTT+TGG | - | chr4.4:7293437-7293456 | MS.gene49763:CDS | 15.0% |
| !!! | TGTTATTTCATCTTATAATT+AGG | - | chr4.4:7292616-7292635 | MS.gene49763:CDS | 15.0% |
| !! | ATAATGTATCATATATTTGC+AGG | - | chr4.4:7293352-7293371 | MS.gene49763:intron | 20.0% |
| !! | ATCATTTATTGATGGAATTA+AGG | - | chr4.4:7292897-7292916 | MS.gene49763:intron | 20.0% |
| !! | TAATGCTTATACAAGATTTA+TGG | - | chr4.4:7293886-7293905 | MS.gene49763:intron | 20.0% |
| !!! | CGCTTAATTATATAGTTTTT+AGG | + | chr4.4:7292754-7292773 | None:intergenic | 20.0% |
| !!! | GCATGTGTTAAATTTAATTT+TGG | - | chr4.4:7292942-7292961 | MS.gene49763:intron | 20.0% |
| !!! | TTTATTAATTGTTATTGTCC+TGG | - | chr4.4:7293947-7293966 | MS.gene49763:intron | 20.0% |
| ! | AATACATATACGTATATAGG+TGG | - | chr4.4:7292968-7292987 | MS.gene49763:intron | 25.0% |
| ! | AGATCACATAGTTTAATAAG+AGG | - | chr4.4:7292700-7292719 | MS.gene49763:CDS | 25.0% |
| ! | ATGAATAATGTTTCAGAGAT+TGG | - | chr4.4:7293700-7293719 | MS.gene49763:intron | 25.0% |
| ! | GCAAGTTTATTAAGCAAATA+TGG | - | chr4.4:7293246-7293265 | MS.gene49763:intron | 25.0% |
| ! | GCTAATACATATACGTATAT+AGG | - | chr4.4:7292965-7292984 | MS.gene49763:intron | 25.0% |
| ! | TAGAAATTAAATGCAACCTT+TGG | + | chr4.4:7292590-7292609 | None:intergenic | 25.0% |
| !! | AATAGTTAACCTTTGAGTTT+GGG | - | chr4.4:7292798-7292817 | MS.gene49763:CDS | 25.0% |
| !! | CAGGGATTAATTTCAATTTT+GGG | - | chr4.4:7293384-7293403 | MS.gene49763:CDS | 25.0% |
| !! | CATAGTTTAATAAGAGGTTT+TGG | - | chr4.4:7292706-7292725 | MS.gene49763:CDS | 25.0% |
| !! | TAATTTTCTACATCAAGTAG+AGG | - | chr4.4:7293796-7293815 | MS.gene49763:intron | 25.0% |
| AATTGCTTGTTCAGGAATAA+GGG | + | chr4.4:7294050-7294069 | None:intergenic | 30.0% | |
| ACGAGTTTAATTATGTCACA+CGG | - | chr4.4:7293584-7293603 | MS.gene49763:CDS | 30.0% | |
| AGCTATGATTCCATTAATGA+AGG | - | chr4.4:7293478-7293497 | MS.gene49763:CDS | 30.0% | |
| TAATTGCTTGTTCAGGAATA+AGG | + | chr4.4:7294051-7294070 | None:intergenic | 30.0% | |
| TTCAGTTGAAAATGCTCATA+CGG | - | chr4.4:7293415-7293434 | MS.gene49763:CDS | 30.0% | |
| ! | ATAAAAATCTTTTCACCCTC+AGG | + | chr4.4:7293932-7293951 | None:intergenic | 30.0% |
| ! | CAATAGTTAACCTTTGAGTT+TGG | - | chr4.4:7292797-7292816 | MS.gene49763:CDS | 30.0% |
| ! | GCAGGGATTAATTTCAATTT+TGG | - | chr4.4:7293383-7293402 | MS.gene49763:CDS | 30.0% |
| ! | TAATTGTTATTGTCCTGGTT+GGG | - | chr4.4:7293952-7293971 | MS.gene49763:intron | 30.0% |
| ! | TCTAAAGTTGCACATATGAT+TGG | + | chr4.4:7293637-7293656 | None:intergenic | 30.0% |
| ! | TTAATTGTTATTGTCCTGGT+TGG | - | chr4.4:7293951-7293970 | MS.gene49763:intron | 30.0% |
| !!! | AAGAGGTTTTGGAATCAAAT+TGG | - | chr4.4:7292717-7292736 | MS.gene49763:CDS | 30.0% |
| AAACTTTCAGATAGACCTGA+GGG | - | chr4.4:7293914-7293933 | MS.gene49763:intron | 35.0% | |
| ACATATACGTATATAGGTGG+TGG | - | chr4.4:7292971-7292990 | MS.gene49763:intron | 35.0% | |
| ATTCCTGAACAAGCAATTAC+AGG | - | chr4.4:7294052-7294071 | MS.gene49763:CDS | 35.0% | |
| ATTTGCAGGTAAACAATGCA+GGG | - | chr4.4:7293366-7293385 | MS.gene49763:intron | 35.0% | |
| CAATGTGGATAATCTTTCAG+AGG | - | chr4.4:7293751-7293770 | MS.gene49763:intron | 35.0% | |
| CATAGCTTCAATCATACGTT+TGG | + | chr4.4:7293465-7293484 | None:intergenic | 35.0% | |
| CTATGGTGGCTTAAATATTC+TGG | - | chr4.4:7293224-7293243 | MS.gene49763:intron | 35.0% | |
| CTTTAACCACTCAGAGAATT+GGG | + | chr4.4:7293199-7293218 | None:intergenic | 35.0% | |
| CTTTCAGAGGAACTTATTGA+CGG | - | chr4.4:7293764-7293783 | MS.gene49763:intron | 35.0% | |
| GAGTGGTTAAAGGAAAACTA+TGG | - | chr4.4:7293207-7293226 | MS.gene49763:CDS | 35.0% | |
| TATTTGCAGGTAAACAATGC+AGG | - | chr4.4:7293365-7293384 | MS.gene49763:intron | 35.0% | |
| TCAATTAAGGTCTTGCAAGA+AGG | - | chr4.4:7293120-7293139 | MS.gene49763:CDS | 35.0% | |
| TGGTTAAAGGAAAACTATGG+TGG | - | chr4.4:7293210-7293229 | MS.gene49763:CDS | 35.0% | |
| TTCAACTATCCAATAGTGCT+TGG | - | chr4.4:7292665-7292684 | MS.gene49763:CDS | 35.0% | |
| TTCCTTATTCTGATCACCAA+AGG | - | chr4.4:7292571-7292590 | MS.gene49763:CDS | 35.0% | |
| TTTCCTGTAATTGCTTGTTC+AGG | + | chr4.4:7294058-7294077 | None:intergenic | 35.0% | |
| TTTCTACATCAAGTAGAGGA+TGG | - | chr4.4:7293800-7293819 | MS.gene49763:intron | 35.0% | |
| ! | AACCTTTGGTGATCAGAATA+AGG | + | chr4.4:7292576-7292595 | None:intergenic | 35.0% |
| ! | TGTTGGCGTTGAATCAATTA+AGG | - | chr4.4:7293107-7293126 | MS.gene49763:CDS | 35.0% |
| ! | TTGGTGATCAGAATAAGGAA+TGG | + | chr4.4:7292571-7292590 | None:intergenic | 35.0% |
| ACAACAAGAGATGCTAGTGT+TGG | - | chr4.4:7293090-7293109 | MS.gene49763:CDS | 40.0% | |
| AGAGGATGGAACTTGGAAAT+CGG | - | chr4.4:7293814-7293833 | MS.gene49763:intron | 40.0% | |
| ATCAAGTAGAGGATGGAACT+TGG | - | chr4.4:7293807-7293826 | MS.gene49763:intron | 40.0% | |
| ATTAAGGTCTTGCAAGAAGG+TGG | - | chr4.4:7293123-7293142 | MS.gene49763:CDS | 40.0% | |
| CCAATTCTCTGAGTGGTTAA+AGG | - | chr4.4:7293197-7293216 | MS.gene49763:CDS | 40.0% | |
| CCTTTAACCACTCAGAGAAT+TGG | + | chr4.4:7293200-7293219 | None:intergenic | 40.0% | |
| GAAACAATTGCTGTGGTTAC+CGG | - | chr4.4:7293000-7293019 | MS.gene49763:intron | 40.0% | |
| GAAACTTTCAGATAGACCTG+AGG | - | chr4.4:7293913-7293932 | MS.gene49763:intron | 40.0% | |
| GAGAGAGCAATTAAGCAATG+TGG | - | chr4.4:7293736-7293755 | MS.gene49763:intron | 40.0% | |
| GAGTAGTCGGTAAATATTCG+AGG | + | chr4.4:7293848-7293867 | None:intergenic | 40.0% | |
| GTCTAAGGAAACAATTGCTG+TGG | - | chr4.4:7292993-7293012 | MS.gene49763:intron | 40.0% | |
| TAGTTTCGACAACGAGTAGT+CGG | + | chr4.4:7293861-7293880 | None:intergenic | 40.0% | |
| TCAGGTTCGACAATTTAGGT+GGG | - | chr4.4:7292852-7292871 | MS.gene49763:CDS | 40.0% | |
| TCATCTCATCCAAGCACTAT+TGG | + | chr4.4:7292677-7292696 | None:intergenic | 40.0% | |
| ! | CTTTGAGTTTGGGAGAGTTT+GGG | - | chr4.4:7292808-7292827 | MS.gene49763:CDS | 40.0% |
| ! | TGGGTTAAAACAGCTCTAAC+AGG | - | chr4.4:7293971-7293990 | MS.gene49763:intron | 40.0% |
| !! | TCAAGACAACTTGCTGATCA+TGG | - | chr4.4:7293051-7293070 | MS.gene49763:CDS | 40.0% |
| ACCGGTGGAAATAGAGGAAT+TGG | - | chr4.4:7293018-7293037 | MS.gene49763:intron | 45.0% | |
| CCAAACTCTCCCAAACTCAA+AGG | + | chr4.4:7292810-7292829 | None:intergenic | 45.0% | |
| CCCAATTCCTCTATTTCCAC+CGG | + | chr4.4:7293022-7293041 | None:intergenic | 45.0% | |
| CCGGTGGAAATAGAGGAATT+GGG | - | chr4.4:7293019-7293038 | MS.gene49763:intron | 45.0% | |
| GAGGATGGAACTTGGAAATC+GGG | - | chr4.4:7293815-7293834 | MS.gene49763:intron | 45.0% | |
| GGTGTCAGGTTCGACAATTT+AGG | - | chr4.4:7292848-7292867 | MS.gene49763:CDS | 45.0% | |
| GTAAATGTTAGCTCGCGTCT+AGG | - | chr4.4:7293524-7293543 | MS.gene49763:CDS | 45.0% | |
| GTCAGGTTCGACAATTTAGG+TGG | - | chr4.4:7292851-7292870 | MS.gene49763:CDS | 45.0% | |
| ! | ACAGCTCTAACAGGTTATGC+AGG | - | chr4.4:7293980-7293999 | MS.gene49763:intron | 45.0% |
| ! | CCTTTGAGTTTGGGAGAGTT+TGG | - | chr4.4:7292807-7292826 | MS.gene49763:CDS | 45.0% |
| ! | CGTATATAGGTGGTGGTCTA+AGG | - | chr4.4:7292978-7292997 | MS.gene49763:intron | 45.0% |
| !! | ATGGTGCTGATACTGGAGTT+TGG | - | chr4.4:7294020-7294039 | MS.gene49763:CDS | 45.0% |
| !! | CGCAAGAGATATCGCTTTTG+AGG | - | chr4.4:7292544-7292563 | MS.gene49763:CDS | 45.0% |
| !!! | AGAGCTGTTTTAACCCAACC+AGG | + | chr4.4:7293968-7293987 | None:intergenic | 45.0% |
| ACAATTGCTGTGGTTACCGG+TGG | - | chr4.4:7293003-7293022 | MS.gene49763:intron | 50.0% | |
| CCACTCAGAGAATTGGGTGA+TGG | + | chr4.4:7293193-7293212 | None:intergenic | 50.0% | |
| CCATCACCCAATTCTCTGAG+TGG | - | chr4.4:7293190-7293209 | MS.gene49763:CDS | 50.0% | |
| GAACTTGGAAATCGGGAGGA+TGG | - | chr4.4:7293822-7293841 | MS.gene49763:intron | 50.0% | |
| GATGGAACTTGGAAATCGGG+AGG | - | chr4.4:7293818-7293837 | MS.gene49763:intron | 50.0% | |
| GCAGCGGAAGCCTTCATTAA+TGG | + | chr4.4:7293491-7293510 | None:intergenic | 50.0% | |
| GTGGTTACCGGTGGAAATAG+AGG | - | chr4.4:7293012-7293031 | MS.gene49763:intron | 50.0% | |
| TACAATACGACCACCAGCAG+CGG | + | chr4.4:7293507-7293526 | None:intergenic | 50.0% | |
| TCGCGTCTAGGTCGACTAAA+TGG | - | chr4.4:7293536-7293555 | MS.gene49763:CDS | 50.0% | |
| TTAATGAAGGCTTCCGCTGC+TGG | - | chr4.4:7293491-7293510 | MS.gene49763:CDS | 50.0% | |
| !! | GGAAGTGTCTCAGTTGAGGA+TGG | - | chr4.4:7294001-7294020 | MS.gene49763:intron | 50.0% |
| !! | GTTGAGGATGGTGCTGATAC+TGG | - | chr4.4:7294013-7294032 | MS.gene49763:intron | 50.0% |
| !! | TGCAGGAAGTGTCTCAGTTG+AGG | - | chr4.4:7293997-7294016 | MS.gene49763:intron | 50.0% |
| GCAAGAAGGTGGTCTCGATG+TGG | - | chr4.4:7293134-7293153 | MS.gene49763:CDS | 55.0% | |
| TTGTCGAACCTGACACCTCG+AGG | + | chr4.4:7292845-7292864 | None:intergenic | 55.0% | |
| ATGAAGGCTTCCGCTGCTGG+TGG | - | chr4.4:7293494-7293513 | MS.gene49763:CDS | 60.0% | |
| ! | GTGCTACTCCTCGAGGTGTC+AGG | - | chr4.4:7292834-7292853 | MS.gene49763:CDS | 60.0% |
| ! | TGGGAGTGTGCTACTCCTCG+AGG | - | chr4.4:7292827-7292846 | MS.gene49763:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 7292501 | 7294111 | 7292501 | ID=MS.gene49763 |
| chr4.4 | mRNA | 7292501 | 7294111 | 7292501 | ID=MS.gene49763.t1;Parent=MS.gene49763 |
| chr4.4 | exon | 7294020 | 7294111 | 7294020 | ID=MS.gene49763.t1.exon1;Parent=MS.gene49763.t1 |
| chr4.4 | CDS | 7294020 | 7294111 | 7294020 | ID=cds.MS.gene49763.t1;Parent=MS.gene49763.t1 |
| chr4.4 | exon | 7293367 | 7293625 | 7293367 | ID=MS.gene49763.t1.exon2;Parent=MS.gene49763.t1 |
| chr4.4 | CDS | 7293367 | 7293625 | 7293367 | ID=cds.MS.gene49763.t1;Parent=MS.gene49763.t1 |
| chr4.4 | exon | 7293044 | 7293238 | 7293044 | ID=MS.gene49763.t1.exon3;Parent=MS.gene49763.t1 |
| chr4.4 | CDS | 7293044 | 7293238 | 7293044 | ID=cds.MS.gene49763.t1;Parent=MS.gene49763.t1 |
| chr4.4 | exon | 7292501 | 7292896 | 7292501 | ID=MS.gene49763.t1.exon4;Parent=MS.gene49763.t1 |
| chr4.4 | CDS | 7292501 | 7292896 | 7292501 | ID=cds.MS.gene49763.t1;Parent=MS.gene49763.t1 |
| Gene Sequence |
| Protein sequence |
