Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49886.t1 | XP_003621538.1 | 99.5 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 5.60E-221 | 776.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49886.t1 | P30074 | 99.0 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 8.7e-223 | 773.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49886.t1 | G7KR33 | 99.5 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 4.0e-221 | 776.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene49886 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene49886 | 0.852448 | 4.59E-61 | -1.69E-46 |
| MS.gene050883 | MS.gene49886 | 0.880188 | 6.74E-70 | -1.69E-46 |
| MS.gene051127 | MS.gene49886 | 0.810825 | 9.51E-51 | -1.69E-46 |
| MS.gene05141 | MS.gene49886 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene051946 | MS.gene49886 | 0.862317 | 5.52E-64 | -1.69E-46 |
| MS.gene052486 | MS.gene49886 | -0.802329 | 5.91E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene49886 | 0.830933 | 2.22E-55 | -1.69E-46 |
| MS.gene053826 | MS.gene49886 | 0.840637 | 7.71E-58 | -1.69E-46 |
| MS.gene054708 | MS.gene49886 | 0.815677 | 8.18E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene49886 | 0.814706 | 1.34E-51 | -1.69E-46 |
| MS.gene055139 | MS.gene49886 | 0.810033 | 1.41E-50 | -1.69E-46 |
| MS.gene055401 | MS.gene49886 | 0.826992 | 2.00E-54 | -1.69E-46 |
| MS.gene056310 | MS.gene49886 | 0.902683 | 7.54E-79 | -1.69E-46 |
| MS.gene056311 | MS.gene49886 | 0.893447 | 6.24E-75 | -1.69E-46 |
| MS.gene056313 | MS.gene49886 | 0.900938 | 4.44E-78 | -1.69E-46 |
| MS.gene056408 | MS.gene49886 | 0.822688 | 2.07E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene49886 | 0.843442 | 1.40E-58 | -1.69E-46 |
| MS.gene058109 | MS.gene49886 | 0.801584 | 8.41E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene49886 | 0.838051 | 3.62E-57 | -1.69E-46 |
| MS.gene058157 | MS.gene49886 | -0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene058170 | MS.gene49886 | 0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene49886 | 0.85136 | 9.34E-61 | -1.69E-46 |
| MS.gene058173 | MS.gene49886 | 0.848821 | 4.80E-60 | -1.69E-46 |
| MS.gene058174 | MS.gene49886 | 0.815459 | 9.14E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene49886 | 0.847084 | 1.45E-59 | -1.69E-46 |
| MS.gene05837 | MS.gene49886 | -0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene058494 | MS.gene49886 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene059044 | MS.gene49886 | 0.8038 | 2.93E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene49886 | 0.843026 | 1.80E-58 | -1.69E-46 |
| MS.gene059236 | MS.gene49886 | 0.822617 | 2.15E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene49886 | 0.825997 | 3.45E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene49886 | 0.810419 | 1.16E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene49886 | -0.806051 | 9.92E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene49886 | -0.815883 | 7.36E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49886.t1 | MTR_7g016820 | 99.486 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 0.0 | 802 |
| MS.gene49886.t1 | MTR_7g016720 | 99.486 | 389 | 2 | 0 | 1 | 389 | 1 | 389 | 0.0 | 800 |
| MS.gene49886.t1 | MTR_7g016780 | 98.972 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 0.0 | 798 |
| MS.gene49886.t1 | MTR_7g016800 | 98.715 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 0.0 | 797 |
| MS.gene49886.t1 | MTR_7g016700 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 797 |
| MS.gene49886.t1 | MTR_1g098140 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 794 |
| MS.gene49886.t1 | MTR_1g097935 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
| MS.gene49886.t1 | MTR_1g097910 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
| MS.gene49886.t1 | MTR_5g007730 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 791 |
| MS.gene49886.t1 | MTR_5g007760 | 96.658 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 0.0 | 783 |
| MS.gene49886.t1 | MTR_5g007717 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 779 |
| MS.gene49886.t1 | MTR_5g007713 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene49886.t1 | MTR_3g083920 | 90.722 | 388 | 36 | 0 | 1 | 388 | 1 | 388 | 0.0 | 749 |
| MS.gene49886.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 746 |
| MS.gene49886.t1 | MTR_2g058470 | 86.889 | 389 | 51 | 0 | 1 | 389 | 1 | 389 | 0.0 | 713 |
| MS.gene49886.t1 | MTR_3g086260 | 81.959 | 388 | 70 | 0 | 1 | 388 | 1 | 388 | 0.0 | 680 |
| MS.gene49886.t1 | MTR_7g084300 | 80.720 | 389 | 75 | 0 | 1 | 389 | 1 | 389 | 0.0 | 673 |
| MS.gene49886.t1 | MTR_7g113405 | 96.040 | 303 | 12 | 0 | 87 | 389 | 1 | 303 | 0.0 | 597 |
| MS.gene49886.t1 | MTR_3g088675 | 66.581 | 389 | 130 | 0 | 1 | 389 | 1 | 389 | 0.0 | 577 |
| MS.gene49886.t1 | MTR_5g007740 | 80.675 | 326 | 63 | 0 | 64 | 389 | 1 | 326 | 0.0 | 550 |
| MS.gene49886.t1 | MTR_5g007723 | 68.010 | 397 | 78 | 5 | 12 | 389 | 32 | 398 | 0.0 | 527 |
| MS.gene49886.t1 | MTR_5g007770 | 77.333 | 300 | 35 | 2 | 70 | 369 | 1 | 267 | 1.46e-166 | 467 |
| MS.gene49886.t1 | MTR_3g088670 | 48.974 | 390 | 185 | 6 | 10 | 388 | 2 | 388 | 2.73e-130 | 379 |
| MS.gene49886.t1 | MTR_4g075560 | 43.158 | 380 | 209 | 4 | 11 | 387 | 13 | 388 | 4.63e-104 | 313 |
| MS.gene49886.t1 | MTR_4g078730 | 37.802 | 373 | 225 | 2 | 15 | 387 | 24 | 389 | 1.32e-93 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49886.t1 | AT5G13930 | 82.732 | 388 | 66 | 1 | 3 | 389 | 8 | 395 | 0.0 | 674 |
| MS.gene49886.t1 | AT4G34850 | 41.114 | 377 | 218 | 3 | 15 | 389 | 18 | 392 | 3.15e-98 | 298 |
| MS.gene49886.t1 | AT4G00040 | 40.051 | 392 | 223 | 6 | 1 | 387 | 1 | 385 | 2.10e-96 | 293 |
| MS.gene49886.t1 | AT1G02050 | 39.332 | 389 | 225 | 6 | 2 | 387 | 12 | 392 | 4.14e-88 | 272 |
| MS.gene49886.t1 | AT4G34850 | 40.625 | 320 | 187 | 2 | 72 | 389 | 1 | 319 | 7.40e-83 | 256 |
Find 95 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.117134 | 7.4:+83280025 | None:intergenic |
| CTTGAATGGGGTGTATTATT+TGG | 0.169989 | 7.4:-83279620 | MS.gene49886:CDS |
| CTGATTACAATTCAATCTTT+TGG | 0.254027 | 7.4:-83279835 | MS.gene49886:CDS |
| CAGCAGCTCCATCTCCAAAT+AGG | 0.265181 | 7.4:+83280074 | None:intergenic |
| AGAGAAGTGCTTAGTGAATA+TGG | 0.285983 | 7.4:-83279731 | MS.gene49886:CDS |
| TGGGGTGTATTATTTGGTTT+TGG | 0.289261 | 7.4:-83279614 | MS.gene49886:CDS |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 7.4:-83280012 | MS.gene49886:CDS |
| TATCAACAAGGGTGCTTTGC+AGG | 0.310964 | 7.4:-83280235 | MS.gene49886:CDS |
| CTTGTTGGACAAGCCCTATT+TGG | 0.312959 | 7.4:-83280088 | MS.gene49886:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 7.4:-83280203 | MS.gene49886:CDS |
| TCTACTTGATCTAGAATTGC+AGG | 0.346751 | 7.4:+83279794 | None:intergenic |
| GGTTTCTCAATTTCTGGTAC+TGG | 0.354846 | 7.4:+83280031 | None:intergenic |
| TCAATGGCTCCTTCACTATC+AGG | 0.368167 | 7.4:+83279971 | None:intergenic |
| CTTTGTTCAACACAATTTGC+AGG | 0.373711 | 7.4:+83280950 | None:intergenic |
| AAGTGAGTAATCTTTGACTT+TGG | 0.381814 | 7.4:+83280355 | None:intergenic |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 7.4:-83279917 | MS.gene49886:CDS |
| CCAATGGCCAAGATAGTTGC+AGG | 0.393168 | 7.4:+83280983 | None:intergenic |
| AAAGATGGATTGAAGACAAC+TGG | 0.397171 | 7.4:-83279650 | MS.gene49886:CDS |
| AGGTGGCACGGTGCTTCGTT+TGG | 0.407834 | 7.4:-83280215 | MS.gene49886:CDS |
| GGAGCTGCTGCACTCATTGT+TGG | 0.411529 | 7.4:-83280061 | MS.gene49886:CDS |
| GAGTTTGGTGAGTTGATAAT+CGG | 0.412058 | 7.4:+83280294 | None:intergenic |
| AAAGAACATTACTAAAGTAT+TGG | 0.417724 | 7.4:-83279885 | MS.gene49886:CDS |
| AGAAGGCCCTGCAACTATCT+TGG | 0.418429 | 7.4:-83280990 | MS.gene49886:CDS |
| TGGGCGAAGACCCAAGAGTT+TGG | 0.423548 | 7.4:+83280279 | None:intergenic |
| AACTGGAGAAGGACTTGAAT+GGG | 0.424547 | 7.4:-83279633 | MS.gene49886:CDS |
| ACTCACTTGGACAGCCTTGT+TGG | 0.426712 | 7.4:-83280103 | MS.gene49886:CDS |
| GGTTGAGGCTTTCGAGCCAT+TGG | 0.433724 | 7.4:-83279864 | MS.gene49886:CDS |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 7.4:+83280010 | None:intergenic |
| TTATCAACTCACCAAACTCT+TGG | 0.454437 | 7.4:-83280290 | MS.gene49886:CDS |
| AAATAATTAAACATCTCATA+TGG | 0.456479 | 7.4:+83279550 | None:intergenic |
| GCTGTCCAAGTGAGTATCAC+TGG | 0.458078 | 7.4:+83280111 | None:intergenic |
| ACGCAAAACAACCGTTTCAA+TGG | 0.461439 | 7.4:+83279580 | None:intergenic |
| AGTGAAGGCTATAAAAGAAT+GGG | 0.468743 | 7.4:-83280383 | MS.gene49886:CDS |
| GCAAGACATGGTGGTGGTAG+AGG | 0.469468 | 7.4:-83280431 | MS.gene49886:CDS |
| CATGTATCTCCTCTTGATCA+TGG | 0.469562 | 7.4:+83280525 | None:intergenic |
| TTCACGAAGGTGACCATCAA+TGG | 0.471758 | 7.4:+83279955 | None:intergenic |
| GTTGAGGCTTTCGAGCCATT+GGG | 0.477937 | 7.4:-83279863 | MS.gene49886:CDS |
| TCTTGCCTTGCATCTAATGA+AGG | 0.480684 | 7.4:+83280448 | None:intergenic |
| GTCACCGCTGTCACATTTCG+TGG | 0.482260 | 7.4:-83280136 | MS.gene49886:CDS |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 7.4:-83279916 | MS.gene49886:CDS |
| CTGAAATTCGTAAAGCTCAA+AGG | 0.484509 | 7.4:-83281015 | MS.gene49886:CDS |
| AGCAGCTCCATCTCCAAATA+GGG | 0.486150 | 7.4:+83280075 | None:intergenic |
| GATGGTCACCTTCGTGAAGC+TGG | 0.486168 | 7.4:-83279950 | MS.gene49886:CDS |
| GATAGTGAAGGAGCCATTGA+TGG | 0.488582 | 7.4:-83279968 | MS.gene49886:CDS |
| TATCAACTCACCAAACTCTT+GGG | 0.490737 | 7.4:-83280289 | MS.gene49886:CDS |
| CAGTGAAGGCTATAAAAGAA+TGG | 0.502364 | 7.4:-83280384 | MS.gene49886:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 7.4:-83280017 | MS.gene49886:CDS |
| ACCAGGACTTACCATTGAAA+CGG | 0.510913 | 7.4:-83279591 | MS.gene49886:CDS |
| TGAAATTCGTAAAGCTCAAA+GGG | 0.513791 | 7.4:-83281014 | MS.gene49886:CDS |
| CAACTGGAGAAGGACTTGAA+TGG | 0.524308 | 7.4:-83279634 | MS.gene49886:CDS |
| CTGTCCAAGTGAGTATCACT+GGG | 0.525567 | 7.4:+83280112 | None:intergenic |
| TACAAGTGGTGTAGACATGC+CGG | 0.531439 | 7.4:-83280320 | MS.gene49886:CDS |
| TGCAGGATTTGCAGTACCAA+TGG | 0.532918 | 7.4:+83280967 | None:intergenic |
| TCCTAGTGTCTGTGAATACA+TGG | 0.535415 | 7.4:-83280473 | MS.gene49886:CDS |
| ACCGTTTCAATGGTAAGTCC+TGG | 0.536054 | 7.4:+83279590 | None:intergenic |
| AGGAAAGGAGGCTGCAGTGA+AGG | 0.537534 | 7.4:-83280398 | MS.gene49886:CDS |
| GTGAGTTGATAATCGGCTCC+CGG | 0.538042 | 7.4:+83280301 | None:intergenic |
| TCTAGAATTGCAGGTCCACC+AGG | 0.538674 | 7.4:+83279803 | None:intergenic |
| CATTACTAAAGTATTGGTTG+AGG | 0.542552 | 7.4:-83279879 | MS.gene49886:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 7.4:+83279915 | None:intergenic |
| ATGTTCTTTGAAACAATCCC+AGG | 0.550779 | 7.4:+83279899 | None:intergenic |
| GGACAAGCCCTATTTGGAGA+TGG | 0.556214 | 7.4:-83280082 | MS.gene49886:CDS |
| GCAGCCTCCTTTCCTAGTCT+AGG | 0.564443 | 7.4:+83280406 | None:intergenic |
| AGAGGTACCTAGACTAGGAA+AGG | 0.571613 | 7.4:-83280413 | MS.gene49886:CDS |
| GGATTGAAGACAACTGGAGA+AGG | 0.572446 | 7.4:-83279644 | MS.gene49886:CDS |
| CCTGCAACTATCTTGGCCAT+TGG | 0.575694 | 7.4:-83280983 | MS.gene49886:CDS |
| CTTGCCTTGCATCTAATGAA+GGG | 0.584271 | 7.4:+83280449 | None:intergenic |
| GTGATAAATCCATGATCAAG+AGG | 0.584564 | 7.4:-83280534 | MS.gene49886:CDS |
| AGGGTGCTTTGCAGGTGGCA+CGG | 0.586084 | 7.4:-83280227 | MS.gene49886:CDS |
| CAAATAGGGCTTGTCCAACA+AGG | 0.587562 | 7.4:+83280089 | None:intergenic |
| CGTAAAGCTCAAAGGGCAGA+AGG | 0.592263 | 7.4:-83281007 | MS.gene49886:CDS |
| TGGCCCCTTCATTAGATGCA+AGG | 0.601157 | 7.4:-83280453 | MS.gene49886:CDS |
| TTAATCGTGTGCACTACAAG+TGG | 0.608875 | 7.4:-83280334 | MS.gene49886:CDS |
| ATTAGATGCAAGGCAAGACA+TGG | 0.614258 | 7.4:-83280443 | MS.gene49886:CDS |
| ACAAGTGGTGTAGACATGCC+GGG | 0.614580 | 7.4:-83280319 | MS.gene49886:CDS |
| CAACAAAGGTGCTCGTGTGT+TGG | 0.620198 | 7.4:-83280173 | MS.gene49886:CDS |
| TGGCCCCAGTGATACTCACT+TGG | 0.620487 | 7.4:-83280116 | MS.gene49886:CDS |
| GCCATGTATTCACAGACACT+AGG | 0.620688 | 7.4:+83280472 | None:intergenic |
| TGCAAGGCAAGACATGGTGG+TGG | 0.625171 | 7.4:-83280437 | MS.gene49886:CDS |
| TTGCCTTGCATCTAATGAAG+GGG | 0.628763 | 7.4:+83280450 | None:intergenic |
| GTGGTAGAGGTACCTAGACT+AGG | 0.632093 | 7.4:-83280418 | MS.gene49886:CDS |
| CAACAAGGGTGCTTTGCAGG+TGG | 0.642274 | 7.4:-83280232 | MS.gene49886:CDS |
| ACAATTGCTCCTGATAGTGA+AGG | 0.642382 | 7.4:-83279980 | MS.gene49886:CDS |
| TTGTAATCAGAAATTCCCAA+TGG | 0.643403 | 7.4:+83279848 | None:intergenic |
| GGTACCTAGACTAGGAAAGG+AGG | 0.643500 | 7.4:-83280410 | MS.gene49886:CDS |
| GATACATGATGTATCAACAA+GGG | 0.660148 | 7.4:-83280246 | MS.gene49886:CDS |
| AGATACATGATGTATCAACA+AGG | 0.672326 | 7.4:-83280247 | MS.gene49886:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.681481 | 7.4:-83280382 | MS.gene49886:CDS |
| GATTTGGCTGAGAACAACAA+AGG | 0.683242 | 7.4:-83280187 | MS.gene49886:CDS |
| AGATGCAAGGCAAGACATGG+TGG | 0.685874 | 7.4:-83280440 | MS.gene49886:CDS |
| ATGTTAGTCCAGCTTCACGA+AGG | 0.698828 | 7.4:+83279942 | None:intergenic |
| CAATGGCCAAGATAGTTGCA+GGG | 0.705812 | 7.4:+83280984 | None:intergenic |
| ACTGGAGAAGGACTTGAATG+GGG | 0.717086 | 7.4:-83279632 | MS.gene49886:CDS |
| GGGGCCACGAAATGTGACAG+CGG | 0.727681 | 7.4:+83280132 | None:intergenic |
| TGTCCAAGTGAGTATCACTG+GGG | 0.825944 | 7.4:+83280113 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATATCAAAATAAATAG+AGG | + | chr7.4:83279760-83279779 | None:intergenic | 15.0% |
| !! | GAAAATAATGTTTATCAATT+TGG | + | chr7.4:83279942-83279961 | None:intergenic | 15.0% |
| !!! | AAGAATACATATTTTTGAAA+AGG | + | chr7.4:83279846-83279865 | None:intergenic | 15.0% |
| !! | AAAGAACATTACTAAAGTAT+TGG | - | chr7.4:83280708-83280727 | MS.gene49886:intron | 20.0% |
| !! | AGAAAAAAATCAACTAAAGA+TGG | - | chr7.4:83280928-83280947 | MS.gene49886:CDS | 20.0% |
| !!! | ACATTTATTTCTCTAGTATT+TGG | - | chr7.4:83279817-83279836 | MS.gene49886:CDS | 20.0% |
| !!! | CATTTATTTCTCTAGTATTT+GGG | - | chr7.4:83279818-83279837 | MS.gene49886:CDS | 20.0% |
| !!! | GTGATTTTAAAGTAAAAATC+AGG | + | chr7.4:83279676-83279695 | None:intergenic | 20.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | + | chr7.4:83280571-83280590 | None:intergenic | 25.0% |
| ! | CATATGTACGTAATTAACTA+TGG | + | chr7.4:83279882-83279901 | None:intergenic | 25.0% |
| !! | ATCATGTATCTTTTCACATA+TGG | + | chr7.4:83280337-83280356 | None:intergenic | 25.0% |
| !! | CTGATTACAATTCAATCTTT+TGG | - | chr7.4:83280758-83280777 | MS.gene49886:intron | 25.0% |
| !! | TCATGTATCTTTTCACATAT+GGG | + | chr7.4:83280336-83280355 | None:intergenic | 25.0% |
| AAAACCAATCACATAATGAC+CGG | + | chr7.4:83279983-83280002 | None:intergenic | 30.0% | |
| AGATACATGATGTATCAACA+AGG | - | chr7.4:83280346-83280365 | MS.gene49886:CDS | 30.0% | |
| AGTGAAGGCTATAAAAGAAT+GGG | - | chr7.4:83280210-83280229 | MS.gene49886:CDS | 30.0% | |
| ATCACCTGAAGTAGTTATAA+TGG | + | chr7.4:83280044-83280063 | None:intergenic | 30.0% | |
| CATTCCATTATAACTACTTC+AGG | - | chr7.4:83280037-83280056 | MS.gene49886:CDS | 30.0% | |
| GATACATGATGTATCAACAA+GGG | - | chr7.4:83280347-83280366 | MS.gene49886:CDS | 30.0% | |
| TGAAATTCGTAAAGCTCAAA+GGG | - | chr7.4:83279579-83279598 | MS.gene49886:CDS | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | - | chr7.4:83280576-83280595 | MS.gene49886:intron | 30.0% | |
| TTGTAATCAGAAATTCCCAA+TGG | + | chr7.4:83280748-83280767 | None:intergenic | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | - | chr7.4:83280581-83280600 | MS.gene49886:intron | 30.0% |
| ! | AAGTGAGTAATCTTTGACTT+TGG | + | chr7.4:83280241-83280260 | None:intergenic | 30.0% |
| !! | ATTCATCTTTTCAGGCTTTA+AGG | + | chr7.4:83280836-83280855 | None:intergenic | 30.0% |
| !! | CATTACTAAAGTATTGGTTG+AGG | - | chr7.4:83280714-83280733 | MS.gene49886:intron | 30.0% |
| !!! | TGCATGTGTTTTGTTTATCT+TGG | - | chr7.4:83280897-83280916 | MS.gene49886:CDS | 30.0% |
| ACATTAGCACATCAGTGTTT+GGG | + | chr7.4:83280017-83280036 | None:intergenic | 35.0% | |
| ACCTTCTTAAAGATGTTCCT+GGG | - | chr7.4:83280677-83280696 | MS.gene49886:intron | 35.0% | |
| CAGTGAAGGCTATAAAAGAA+TGG | - | chr7.4:83280209-83280228 | MS.gene49886:CDS | 35.0% | |
| CTGAAATTCGTAAAGCTCAA+AGG | - | chr7.4:83279578-83279597 | MS.gene49886:CDS | 35.0% | |
| CTTGAATGGGGTGTATTATT+TGG | - | chr7.4:83280973-83280992 | MS.gene49886:CDS | 35.0% | |
| CTTTGTTCAACACAATTTGC+AGG | + | chr7.4:83279646-83279665 | None:intergenic | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | + | chr7.4:83280586-83280605 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | - | chr7.4:83280211-83280230 | MS.gene49886:CDS | 35.0% | |
| GTGATAAATCCATGATCAAG+AGG | - | chr7.4:83280059-83280078 | MS.gene49886:CDS | 35.0% | |
| TATCAACTCACCAAACTCTT+GGG | - | chr7.4:83280304-83280323 | MS.gene49886:CDS | 35.0% | |
| TTATCAACTCACCAAACTCT+TGG | - | chr7.4:83280303-83280322 | MS.gene49886:CDS | 35.0% | |
| ! | CTAGTTGCATTCATCTTTTC+AGG | + | chr7.4:83280844-83280863 | None:intergenic | 35.0% |
| ! | TCTACTTGATCTAGAATTGC+AGG | + | chr7.4:83280802-83280821 | None:intergenic | 35.0% |
| !! | AAAGATGGATTGAAGACAAC+TGG | - | chr7.4:83280943-83280962 | MS.gene49886:CDS | 35.0% |
| !! | AGAGAAGTGCTTAGTGAATA+TGG | - | chr7.4:83280862-83280881 | MS.gene49886:intron | 35.0% |
| !! | ATGTTCTTTGAAACAATCCC+AGG | + | chr7.4:83280697-83280716 | None:intergenic | 35.0% |
| !! | GAGTTTGGTGAGTTGATAAT+CGG | + | chr7.4:83280302-83280321 | None:intergenic | 35.0% |
| !! | TGGGGTGTATTATTTGGTTT+TGG | - | chr7.4:83280979-83280998 | MS.gene49886:CDS | 35.0% |
| !!! | GGTCATTATGTGATTGGTTT+TGG | - | chr7.4:83279982-83280001 | MS.gene49886:CDS | 35.0% |
| !!! | GTATTATTTGGTTTTGGACC+AGG | - | chr7.4:83280985-83281004 | MS.gene49886:CDS | 35.0% |
| AACTGGAGAAGGACTTGAAT+GGG | - | chr7.4:83280960-83280979 | MS.gene49886:CDS | 40.0% | |
| ACCAGGACTTACCATTGAAA+CGG | - | chr7.4:83281002-83281021 | MS.gene49886:CDS | 40.0% | |
| ACGCAAAACAACCGTTTCAA+TGG | + | chr7.4:83281016-83281035 | None:intergenic | 40.0% | |
| ATTAGATGCAAGGCAAGACA+TGG | - | chr7.4:83280150-83280169 | MS.gene49886:CDS | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | - | chr7.4:83280676-83280695 | MS.gene49886:intron | 40.0% | |
| CACTGAAGAGATAAAGAGAC+CGG | - | chr7.4:83279961-83279980 | MS.gene49886:CDS | 40.0% | |
| CATGTATCTCCTCTTGATCA+TGG | + | chr7.4:83280071-83280090 | None:intergenic | 40.0% | |
| CTTGCCTTGCATCTAATGAA+GGG | + | chr7.4:83280147-83280166 | None:intergenic | 40.0% | |
| GACATTAGCACATCAGTGTT+TGG | + | chr7.4:83280018-83280037 | None:intergenic | 40.0% | |
| GATTTGGCTGAGAACAACAA+AGG | - | chr7.4:83280406-83280425 | MS.gene49886:CDS | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | chr7.4:83280390-83280409 | MS.gene49886:CDS | 40.0% | |
| TCCTAGTGTCTGTGAATACA+TGG | - | chr7.4:83280120-83280139 | MS.gene49886:CDS | 40.0% | |
| TCTTGCCTTGCATCTAATGA+AGG | + | chr7.4:83280148-83280167 | None:intergenic | 40.0% | |
| TTAATCGTGTGCACTACAAG+TGG | - | chr7.4:83280259-83280278 | MS.gene49886:CDS | 40.0% | |
| TTGCCTTGCATCTAATGAAG+GGG | + | chr7.4:83280146-83280165 | None:intergenic | 40.0% | |
| ! | ACAATTGCTCCTGATAGTGA+AGG | - | chr7.4:83280613-83280632 | MS.gene49886:intron | 40.0% |
| ! | ATCTTTTGGATTGCACATCC+TGG | - | chr7.4:83280772-83280791 | MS.gene49886:intron | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | + | chr7.4:83280681-83280700 | None:intergenic | 40.0% |
| !! | GGTTTCTCAATTTCTGGTAC+TGG | + | chr7.4:83280565-83280584 | None:intergenic | 40.0% |
| ACCGTTTCAATGGTAAGTCC+TGG | + | chr7.4:83281006-83281025 | None:intergenic | 45.0% | |
| ACTGGAGAAGGACTTGAATG+GGG | - | chr7.4:83280961-83280980 | MS.gene49886:CDS | 45.0% | |
| AGCAGCTCCATCTCCAAATA+GGG | + | chr7.4:83280521-83280540 | None:intergenic | 45.0% | |
| ATGTTAGTCCAGCTTCACGA+AGG | + | chr7.4:83280654-83280673 | None:intergenic | 45.0% | |
| CAAATAGGGCTTGTCCAACA+AGG | + | chr7.4:83280507-83280526 | None:intergenic | 45.0% | |
| CAACTGGAGAAGGACTTGAA+TGG | - | chr7.4:83280959-83280978 | MS.gene49886:CDS | 45.0% | |
| CAATGGCCAAGATAGTTGCA+GGG | + | chr7.4:83279612-83279631 | None:intergenic | 45.0% | |
| CTGTCCAAGTGAGTATCACT+GGG | + | chr7.4:83280484-83280503 | None:intergenic | 45.0% | |
| CTTGTTGGACAAGCCCTATT+TGG | - | chr7.4:83280505-83280524 | MS.gene49886:CDS | 45.0% | |
| GAGACCGGTCATTATGTGAT+TGG | - | chr7.4:83279976-83279995 | MS.gene49886:CDS | 45.0% | |
| GATAGTGAAGGAGCCATTGA+TGG | - | chr7.4:83280625-83280644 | MS.gene49886:intron | 45.0% | |
| GCCATGTATTCACAGACACT+AGG | + | chr7.4:83280124-83280143 | None:intergenic | 45.0% | |
| GGATTGAAGACAACTGGAGA+AGG | - | chr7.4:83280949-83280968 | MS.gene49886:CDS | 45.0% | |
| TACAAGTGGTGTAGACATGC+CGG | - | chr7.4:83280273-83280292 | MS.gene49886:CDS | 45.0% | |
| TCAATGGCTCCTTCACTATC+AGG | + | chr7.4:83280625-83280644 | None:intergenic | 45.0% | |
| TGCAGGATTTGCAGTACCAA+TGG | + | chr7.4:83279629-83279648 | None:intergenic | 45.0% | |
| TGTCCAAGTGAGTATCACTG+GGG | + | chr7.4:83280483-83280502 | None:intergenic | 45.0% | |
| TTCACGAAGGTGACCATCAA+TGG | + | chr7.4:83280641-83280660 | None:intergenic | 45.0% | |
| ! | TTTTGGATTGCACATCCTGG+TGG | - | chr7.4:83280775-83280794 | MS.gene49886:intron | 45.0% |
| !! | AACGGTTGTTTTGCGTAGTG+TGG | - | chr7.4:83281020-83281039 | MS.gene49886:CDS | 45.0% |
| !! | AGAGGTACCTAGACTAGGAA+AGG | - | chr7.4:83280180-83280199 | MS.gene49886:CDS | 45.0% |
| !! | TATCAACAAGGGTGCTTTGC+AGG | - | chr7.4:83280358-83280377 | MS.gene49886:CDS | 45.0% |
| ACAAGTGGTGTAGACATGCC+GGG | - | chr7.4:83280274-83280293 | MS.gene49886:CDS | 50.0% | |
| AGAAGGCCCTGCAACTATCT+TGG | - | chr7.4:83279603-83279622 | MS.gene49886:CDS | 50.0% | |
| AGATGCAAGGCAAGACATGG+TGG | - | chr7.4:83280153-83280172 | MS.gene49886:CDS | 50.0% | |
| CAGCAGCTCCATCTCCAAAT+AGG | + | chr7.4:83280522-83280541 | None:intergenic | 50.0% | |
| CCAATGGCCAAGATAGTTGC+AGG | + | chr7.4:83279613-83279632 | None:intergenic | 50.0% | |
| CCTGCAACTATCTTGGCCAT+TGG | - | chr7.4:83279610-83279629 | MS.gene49886:CDS | 50.0% | |
| CGTAAAGCTCAAAGGGCAGA+AGG | - | chr7.4:83279586-83279605 | MS.gene49886:CDS | 50.0% | |
| GCTGTCCAAGTGAGTATCAC+TGG | + | chr7.4:83280485-83280504 | None:intergenic | 50.0% | |
| GGACAAGCCCTATTTGGAGA+TGG | - | chr7.4:83280511-83280530 | MS.gene49886:CDS | 50.0% | |
| GGTACCTAGACTAGGAAAGG+AGG | - | chr7.4:83280183-83280202 | MS.gene49886:CDS | 50.0% | |
| GTTGAGGCTTTCGAGCCATT+GGG | - | chr7.4:83280730-83280749 | MS.gene49886:intron | 50.0% | |
| TGGCCCCTTCATTAGATGCA+AGG | - | chr7.4:83280140-83280159 | MS.gene49886:CDS | 50.0% | |
| ! | ACTCACTTGGACAGCCTTGT+TGG | - | chr7.4:83280490-83280509 | MS.gene49886:CDS | 50.0% |
| ! | TCTAGAATTGCAGGTCCACC+AGG | + | chr7.4:83280793-83280812 | None:intergenic | 50.0% |
| !! | CAACAAAGGTGCTCGTGTGT+TGG | - | chr7.4:83280420-83280439 | MS.gene49886:CDS | 50.0% |
| !! | GTGAGTTGATAATCGGCTCC+CGG | + | chr7.4:83280295-83280314 | None:intergenic | 50.0% |
| !! | GTGGTAGAGGTACCTAGACT+AGG | - | chr7.4:83280175-83280194 | MS.gene49886:CDS | 50.0% |
| AGGAAAGGAGGCTGCAGTGA+AGG | - | chr7.4:83280195-83280214 | MS.gene49886:CDS | 55.0% | |
| GATGGTCACCTTCGTGAAGC+TGG | - | chr7.4:83280643-83280662 | MS.gene49886:intron | 55.0% | |
| GCAGCCTCCTTTCCTAGTCT+AGG | + | chr7.4:83280190-83280209 | None:intergenic | 55.0% | |
| GGAGCTGCTGCACTCATTGT+TGG | - | chr7.4:83280532-83280551 | MS.gene49886:CDS | 55.0% | |
| GGTTGAGGCTTTCGAGCCAT+TGG | - | chr7.4:83280729-83280748 | MS.gene49886:intron | 55.0% | |
| GTCACCGCTGTCACATTTCG+TGG | - | chr7.4:83280457-83280476 | MS.gene49886:CDS | 55.0% | |
| TGCAAGGCAAGACATGGTGG+TGG | - | chr7.4:83280156-83280175 | MS.gene49886:CDS | 55.0% | |
| TGGCCCCAGTGATACTCACT+TGG | - | chr7.4:83280477-83280496 | MS.gene49886:CDS | 55.0% | |
| TGGGCGAAGACCCAAGAGTT+TGG | + | chr7.4:83280317-83280336 | None:intergenic | 55.0% | |
| !! | CAACAAGGGTGCTTTGCAGG+TGG | - | chr7.4:83280361-83280380 | MS.gene49886:CDS | 55.0% |
| !! | GCAAGACATGGTGGTGGTAG+AGG | - | chr7.4:83280162-83280181 | MS.gene49886:CDS | 55.0% |
| AGGTGGCACGGTGCTTCGTT+TGG | - | chr7.4:83280378-83280397 | MS.gene49886:CDS | 60.0% | |
| GGGGCCACGAAATGTGACAG+CGG | + | chr7.4:83280464-83280483 | None:intergenic | 60.0% | |
| ! | AGGGTGCTTTGCAGGTGGCA+CGG | - | chr7.4:83280366-83280385 | MS.gene49886:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 83279565 | 83281050 | 83279565 | ID=MS.gene49886 |
| chr7.4 | mRNA | 83279565 | 83281050 | 83279565 | ID=MS.gene49886.t1;Parent=MS.gene49886 |
| chr7.4 | exon | 83280873 | 83281050 | 83280873 | ID=MS.gene49886.t1.exon1;Parent=MS.gene49886.t1 |
| chr7.4 | CDS | 83280873 | 83281050 | 83280873 | ID=cds.MS.gene49886.t1;Parent=MS.gene49886.t1 |
| chr7.4 | exon | 83279565 | 83280556 | 83279565 | ID=MS.gene49886.t1.exon2;Parent=MS.gene49886.t1 |
| chr7.4 | CDS | 83279565 | 83280556 | 83279565 | ID=cds.MS.gene49886.t1;Parent=MS.gene49886.t1 |
| Gene Sequence |
| Protein sequence |
