Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50640.t1 | XP_013468487.1 | 100 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 2.40E-88 | 334.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50640.t1 | Q43291 | 81.1 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 1.0e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50640.t1 | I3T8M7 | 100.0 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.7e-88 | 334.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049387 | MS.gene50640 | 0.858497 | 7.91E-63 | -1.69E-46 |
| MS.gene050134 | MS.gene50640 | 0.897513 | 1.31E-76 | -1.69E-46 |
| MS.gene050252 | MS.gene50640 | 0.890279 | 1.14E-73 | -1.69E-46 |
| MS.gene050791 | MS.gene50640 | 0.882679 | 8.51E-71 | -1.69E-46 |
| MS.gene050912 | MS.gene50640 | 0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene051904 | MS.gene50640 | 0.878726 | 2.22E-69 | -1.69E-46 |
| MS.gene051984 | MS.gene50640 | 0.852136 | 5.63E-61 | -1.69E-46 |
| MS.gene052412 | MS.gene50640 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene052664 | MS.gene50640 | 0.842817 | 2.05E-58 | -1.69E-46 |
| MS.gene052666 | MS.gene50640 | 0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene50640 | 0.887562 | 1.28E-72 | -1.69E-46 |
| MS.gene054624 | MS.gene50640 | 0.823793 | 1.14E-53 | -1.69E-46 |
| MS.gene057092 | MS.gene50640 | 0.824704 | 6.99E-54 | -1.69E-46 |
| MS.gene057235 | MS.gene50640 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene057272 | MS.gene50640 | 0.921344 | 4.03E-88 | -1.69E-46 |
| MS.gene057321 | MS.gene50640 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene057641 | MS.gene50640 | 0.828446 | 8.95E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene50640 | 0.873364 | 1.56E-67 | -1.69E-46 |
| MS.gene058994 | MS.gene50640 | 0.82135 | 4.23E-53 | -1.69E-46 |
| MS.gene059340 | MS.gene50640 | 0.884106 | 2.54E-71 | -1.69E-46 |
| MS.gene060483 | MS.gene50640 | 0.882638 | 8.81E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50640 | MS.gene007018 | PPI |
| MS.gene50640 | MS.gene036076 | PPI |
| MS.gene50640 | MS.gene23031 | PPI |
| MS.gene79286 | MS.gene50640 | PPI |
| MS.gene50640 | MS.gene000360 | PPI |
| MS.gene50640 | MS.gene79286 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50640.t1 | MTR_1g069905 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 1.48e-120 | 337 |
| MS.gene50640.t1 | MTR_7g107420 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 2.29e-120 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50640.t1 | AT1G09690 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.44e-101 | 288 |
| MS.gene50640.t1 | AT1G09590 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 3.44e-101 | 288 |
| MS.gene50640.t1 | AT1G57860 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.04e-100 | 286 |
| MS.gene50640.t1 | AT1G57660 | 80.488 | 164 | 32 | 0 | 1 | 164 | 1 | 164 | 1.04e-100 | 286 |
Find 61 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTCGACATTAGAGTTAA+TGG | 0.335175 | 1.2:+53134904 | MS.gene50640:CDS |
| TCCACCATGAAACCAGGTTT+GGG | 0.345744 | 1.2:-53136049 | None:intergenic |
| AACTCCTCAGTGCACCTTGA+TGG | 0.353770 | 1.2:-53135938 | None:intergenic |
| AGATCATTAACGACATCATA+TGG | 0.366035 | 1.2:-53136103 | None:intergenic |
| GGGGCCCTCTGGCTTGCGCT+TGG | 0.369033 | 1.2:-53136029 | None:intergenic |
| TTCCACCATGAAACCAGGTT+TGG | 0.392778 | 1.2:-53136050 | None:intergenic |
| GGGCCCCAAACCTGGTTTCA+TGG | 0.399375 | 1.2:+53136045 | MS.gene50640:CDS |
| TTAACGACATCATATGGAAT+TGG | 0.408404 | 1.2:-53136097 | None:intergenic |
| CTTGTTGACTTCGACACCAA+TGG | 0.410846 | 1.2:-53135001 | None:intergenic |
| AAACCAGGTTTGGGGCCCTC+TGG | 0.418683 | 1.2:-53136040 | None:intergenic |
| ACGGTCGTACCGGTCGTGTC+TGG | 0.430669 | 1.2:+53134962 | MS.gene50640:CDS |
| AAGCCAGAGGGCCCCAAACC+TGG | 0.445982 | 1.2:+53136037 | MS.gene50640:CDS |
| CTCTCCCTTGGCCTTAGCCT+CGG | 0.448320 | 1.2:-53135996 | None:intergenic |
| GGTGCTTATCACCTCTCCCT+TGG | 0.453810 | 1.2:-53136008 | None:intergenic |
| CTCTCGTCCCTTCCGCAAGA+AGG | 0.461875 | 1.2:+53134834 | MS.gene50640:CDS |
| TTCGACACCAATGGCCCGCT+TGG | 0.477602 | 1.2:-53134992 | None:intergenic |
| AGTCCTGAGGTAGGTGGCTA+AGG | 0.478683 | 1.2:-53134866 | None:intergenic |
| CGAGGCTAAGGCCAAGGGAG+AGG | 0.486454 | 1.2:+53135997 | MS.gene50640:CDS |
| GGGACGAGAGAATGAATCTC+TGG | 0.494698 | 1.2:-53134821 | None:intergenic |
| AGCACCAAGCGCAAGCCAGA+GGG | 0.504695 | 1.2:+53136025 | MS.gene50640:CDS |
| TATTGTTCCCTTCTTGCGGA+AGG | 0.508429 | 1.2:-53134842 | None:intergenic |
| TCAATTGAAGGCCGAGGCTA+AGG | 0.510816 | 1.2:+53135985 | MS.gene50640:CDS |
| AATGTCACCAAGCGGGCCAT+TGG | 0.521717 | 1.2:+53134985 | MS.gene50640:CDS |
| AAATTCTACCACGGTCGTAC+CGG | 0.524822 | 1.2:+53134952 | MS.gene50640:CDS |
| GATCAAGAATGATCAATTGA+AGG | 0.525684 | 1.2:+53135973 | MS.gene50640:CDS |
| GAAAACATGCCTGCAGGTCA+TGG | 0.528675 | 1.2:+53134784 | None:intergenic |
| GATCGTAAACCATGACCTGC+AGG | 0.529368 | 1.2:-53134793 | None:intergenic |
| CATGGTGGAAGGTGCTACAT+TGG | 0.534415 | 1.2:+53136063 | MS.gene50640:CDS |
| ATTGTTCCCTTCTTGCGGAA+GGG | 0.538504 | 1.2:-53134841 | None:intergenic |
| AGAGAATGAATCTCTGGTGC+GGG | 0.544173 | 1.2:-53134815 | None:intergenic |
| TCTCGTCCCTTCCGCAAGAA+GGG | 0.545142 | 1.2:+53134835 | MS.gene50640:CDS |
| TAGCCTTAGCCACCTACCTC+AGG | 0.549870 | 1.2:+53134863 | MS.gene50640:CDS |
| GAATGATCAATTGAAGGCCG+AGG | 0.551548 | 1.2:+53135979 | MS.gene50640:CDS |
| AGGCTATTGTTCCCTTCTTG+CGG | 0.554250 | 1.2:-53134846 | None:intergenic |
| AAGCACCAAGCGCAAGCCAG+AGG | 0.557087 | 1.2:+53136024 | MS.gene50640:CDS |
| GAAGAAGAAAACATGCCTGC+AGG | 0.557795 | 1.2:+53134778 | None:intergenic |
| TGGAGCATGTTATGCCATCA+AGG | 0.559210 | 1.2:+53135924 | MS.gene50640:CDS |
| GAAGGCCGAGGCTAAGGCCA+AGG | 0.560874 | 1.2:+53135991 | MS.gene50640:CDS |
| TGTCTGGAATGTCACCAAGC+GGG | 0.572072 | 1.2:+53134978 | MS.gene50640:CDS |
| GCACCTTCCACCATGAAACC+AGG | 0.576804 | 1.2:-53136055 | None:intergenic |
| AAACCTGGTTTCATGGTGGA+AGG | 0.589005 | 1.2:+53136052 | MS.gene50640:CDS |
| GCACTGAGGAGTTCAGATTG+AGG | 0.599052 | 1.2:+53135948 | MS.gene50640:CDS |
| GGTGACATTCCAGACACGAC+CGG | 0.600537 | 1.2:-53134971 | None:intergenic |
| ATGGCATAACATGCTCCACT+CGG | 0.618716 | 1.2:-53135919 | None:intergenic |
| GAGAGAATGAATCTCTGGTG+CGG | 0.619187 | 1.2:-53134816 | None:intergenic |
| GATGTCGTTAATGATCTCAA+AGG | 0.621805 | 1.2:+53136109 | MS.gene50640:CDS |
| GTTAATGGAGCTGTGCACAA+AGG | 0.632022 | 1.2:+53134919 | MS.gene50640:CDS |
| GTCGTTAATGATCTCAAAGG+AGG | 0.636972 | 1.2:+53136112 | MS.gene50640:CDS |
| AAGGCCGAGGCTAAGGCCAA+GGG | 0.643263 | 1.2:+53135992 | MS.gene50640:CDS |
| CCACCATGAAACCAGGTTTG+GGG | 0.653619 | 1.2:-53136048 | None:intergenic |
| GTGTCTGGAATGTCACCAAG+CGG | 0.655012 | 1.2:+53134977 | MS.gene50640:CDS |
| GTGATAAGTCCTGAGGTAGG+TGG | 0.662852 | 1.2:-53134872 | None:intergenic |
| CGACCGTGGTAGAATTTGTG+CGG | 0.677873 | 1.2:-53134946 | None:intergenic |
| CACCGATGTGATAAGTCCTG+AGG | 0.683027 | 1.2:-53134879 | None:intergenic |
| GATGTGATAAGTCCTGAGGT+AGG | 0.683685 | 1.2:-53134875 | None:intergenic |
| CCCCAAACCTGGTTTCATGG+TGG | 0.684233 | 1.2:+53136048 | MS.gene50640:CDS |
| AGACACGACCGGTACGACCG+TGG | 0.690324 | 1.2:-53134960 | None:intergenic |
| GAAGAGGATTCATGTCCGAG+TGG | 0.705446 | 1.2:+53135904 | MS.gene50640:CDS |
| TACCTCAGGACTTATCACAT+CGG | 0.727991 | 1.2:+53134877 | MS.gene50640:CDS |
| ATGCCGCACAAATTCTACCA+CGG | 0.741255 | 1.2:+53134943 | MS.gene50640:CDS |
| TATGCCATCAAGGTGCACTG+AGG | 0.765204 | 1.2:+53135934 | MS.gene50640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATAAATGAAAGTATTTGT+AGG | - | chr1.2:53135539-53135558 | None:intergenic | 20.0% |
| !!! | CAAAATTCTTCTAAGTTTTT+AGG | + | chr1.2:53135691-53135710 | MS.gene50640:intron | 20.0% |
| !!! | GAAGAATTTTGTGTTAAATA+TGG | - | chr1.2:53135682-53135701 | None:intergenic | 20.0% |
| ! | AAGTTGGAAAACAAAAACTT+AGG | - | chr1.2:53135459-53135478 | None:intergenic | 25.0% |
| ! | AGGAACTAAACATGATAAAA+TGG | - | chr1.2:53135519-53135538 | None:intergenic | 25.0% |
| ! | AGTTGGAAAACAAAAACTTA+GGG | - | chr1.2:53135458-53135477 | None:intergenic | 25.0% |
| ! | TCAAACAACAAAATGAATCA+AGG | - | chr1.2:53135265-53135284 | None:intergenic | 25.0% |
| ! | TTTGCTTTAGTAGTATATTC+AGG | + | chr1.2:53135187-53135206 | MS.gene50640:intron | 25.0% |
| !! | ACTTGACATGATGTTTTATA+TGG | + | chr1.2:53135649-53135668 | MS.gene50640:intron | 25.0% |
| !! | ATTCGAGTCTTTTAATAAGT+TGG | - | chr1.2:53135475-53135494 | None:intergenic | 25.0% |
| !!! | AATGTTGCTATTTATGTTTC+AGG | + | chr1.2:53135862-53135881 | MS.gene50640:intron | 25.0% |
| !!! | TTCTAAGTTTTTAGGTCTTA+AGG | + | chr1.2:53135699-53135718 | MS.gene50640:intron | 25.0% |
| !!! | TTGTTTGAGTTTTGTTTAGA+TGG | + | chr1.2:53135277-53135296 | MS.gene50640:intron | 25.0% |
| AATCTCTTGGATAGAATGTA+TGG | + | chr1.2:53135759-53135778 | MS.gene50640:intron | 30.0% | |
| ACAAATATATGTGACGTGAT+AGG | + | chr1.2:53135079-53135098 | MS.gene50640:intron | 30.0% | |
| AGATCATTAACGACATCATA+TGG | - | chr1.2:53136106-53136125 | None:intergenic | 30.0% | |
| ATAAGCAGTAAGCTATCTTA+GGG | - | chr1.2:53135332-53135351 | None:intergenic | 30.0% | |
| CAATATCTTTACAAGCAAAG+CGG | - | chr1.2:53135827-53135846 | None:intergenic | 30.0% | |
| CATCAAAATCACCATATATG+AGG | + | chr1.2:53135610-53135629 | MS.gene50640:intron | 30.0% | |
| CTCTTCAAAAACCTCATATA+TGG | - | chr1.2:53135624-53135643 | None:intergenic | 30.0% | |
| GATCAAGAATGATCAATTGA+AGG | + | chr1.2:53135973-53135992 | MS.gene50640:CDS | 30.0% | |
| TATAAGCAGTAAGCTATCTT+AGG | - | chr1.2:53135333-53135352 | None:intergenic | 30.0% | |
| TATGTCGACATTAGAGTTAA+TGG | + | chr1.2:53134904-53134923 | MS.gene50640:CDS | 30.0% | |
| TTAACGACATCATATGGAAT+TGG | - | chr1.2:53136100-53136119 | None:intergenic | 30.0% | |
| TTAATTTCCAGAGAATCTCT+TGG | + | chr1.2:53135746-53135765 | MS.gene50640:intron | 30.0% | |
| !! | TGCTATTTATGTTTCAGGTT+AGG | + | chr1.2:53135867-53135886 | MS.gene50640:intron | 30.0% |
| !!! | TGAGTTTTGTTTAGATGGAT+TGG | + | chr1.2:53135282-53135301 | MS.gene50640:intron | 30.0% |
| ACAAAAACTTAGGGCATGTT+TGG | - | chr1.2:53135449-53135468 | None:intergenic | 35.0% | |
| AGTAAGCTATCTTAGGGATA+AGG | - | chr1.2:53135326-53135345 | None:intergenic | 35.0% | |
| ATTCTATCCAAGAGATTCTC+TGG | - | chr1.2:53135756-53135775 | None:intergenic | 35.0% | |
| GATGTCGTTAATGATCTCAA+AGG | + | chr1.2:53136109-53136128 | MS.gene50640:CDS | 35.0% | |
| TCCAATTCCAAGTGAGAAAT+TGG | - | chr1.2:53135569-53135588 | None:intergenic | 35.0% | |
| TCCAATTTCTCACTTGGAAT+TGG | + | chr1.2:53135565-53135584 | MS.gene50640:intron | 35.0% | |
| ! | AGGTTAGGAACAAGATTTTG+AGG | + | chr1.2:53135882-53135901 | MS.gene50640:intron | 35.0% |
| ATGTGACGTGATAGGTGTTA+TGG | + | chr1.2:53135087-53135106 | MS.gene50640:intron | 40.0% | |
| CAAGTCTCCAATTTCTCACT+TGG | + | chr1.2:53135559-53135578 | MS.gene50640:intron | 40.0% | |
| GTCGTTAATGATCTCAAAGG+AGG | + | chr1.2:53136112-53136131 | MS.gene50640:CDS | 40.0% | |
| TACCTCAGGACTTATCACAT+CGG | + | chr1.2:53134877-53134896 | MS.gene50640:CDS | 40.0% | |
| !! | GGAACAAGATTTTGAGGAAG+AGG | + | chr1.2:53135888-53135907 | MS.gene50640:CDS | 40.0% |
| AAATTCTACCACGGTCGTAC+CGG | + | chr1.2:53134952-53134971 | MS.gene50640:CDS | 45.0% | |
| AGAGAATGAATCTCTGGTGC+GGG | - | chr1.2:53134818-53134837 | None:intergenic | 45.0% | |
| AGGCTATTGTTCCCTTCTTG+CGG | - | chr1.2:53134849-53134868 | None:intergenic | 45.0% | |
| ATGCCGCACAAATTCTACCA+CGG | + | chr1.2:53134943-53134962 | MS.gene50640:CDS | 45.0% | |
| ATGGCATAACATGCTCCACT+CGG | - | chr1.2:53135922-53135941 | None:intergenic | 45.0% | |
| ATTGTTCCCTTCTTGCGGAA+GGG | - | chr1.2:53134844-53134863 | None:intergenic | 45.0% | |
| GAATGATCAATTGAAGGCCG+AGG | + | chr1.2:53135979-53135998 | MS.gene50640:CDS | 45.0% | |
| GAGAGAATGAATCTCTGGTG+CGG | - | chr1.2:53134819-53134838 | None:intergenic | 45.0% | |
| GATGTGATAAGTCCTGAGGT+AGG | - | chr1.2:53134878-53134897 | None:intergenic | 45.0% | |
| GTTAATGGAGCTGTGCACAA+AGG | + | chr1.2:53134919-53134938 | MS.gene50640:CDS | 45.0% | |
| TATTGTTCCCTTCTTGCGGA+AGG | - | chr1.2:53134845-53134864 | None:intergenic | 45.0% | |
| TCCACCATGAAACCAGGTTT+GGG | - | chr1.2:53136052-53136071 | None:intergenic | 45.0% | |
| TGGAGCATGTTATGCCATCA+AGG | + | chr1.2:53135924-53135943 | MS.gene50640:CDS | 45.0% | |
| TTCCACCATGAAACCAGGTT+TGG | - | chr1.2:53136053-53136072 | None:intergenic | 45.0% | |
| ! | AAACCTGGTTTCATGGTGGA+AGG | + | chr1.2:53136052-53136071 | MS.gene50640:CDS | 45.0% |
| !! | CTTGTTGACTTCGACACCAA+TGG | - | chr1.2:53135004-53135023 | None:intergenic | 45.0% |
| AACTCCTCAGTGCACCTTGA+TGG | - | chr1.2:53135941-53135960 | None:intergenic | 50.0% | |
| CACCGATGTGATAAGTCCTG+AGG | - | chr1.2:53134882-53134901 | None:intergenic | 50.0% | |
| CCACCATGAAACCAGGTTTG+GGG | - | chr1.2:53136051-53136070 | None:intergenic | 50.0% | |
| CGACCGTGGTAGAATTTGTG+CGG | - | chr1.2:53134949-53134968 | None:intergenic | 50.0% | |
| GAAGAGGATTCATGTCCGAG+TGG | + | chr1.2:53135904-53135923 | MS.gene50640:CDS | 50.0% | |
| GATCGTAAACCATGACCTGC+AGG | - | chr1.2:53134796-53134815 | None:intergenic | 50.0% | |
| GCACTGAGGAGTTCAGATTG+AGG | + | chr1.2:53135948-53135967 | MS.gene50640:CDS | 50.0% | |
| GGGACGAGAGAATGAATCTC+TGG | - | chr1.2:53134824-53134843 | None:intergenic | 50.0% | |
| GTGATAAGTCCTGAGGTAGG+TGG | - | chr1.2:53134875-53134894 | None:intergenic | 50.0% | |
| TATGCCATCAAGGTGCACTG+AGG | + | chr1.2:53135934-53135953 | MS.gene50640:CDS | 50.0% | |
| TCAATTGAAGGCCGAGGCTA+AGG | + | chr1.2:53135985-53136004 | MS.gene50640:CDS | 50.0% | |
| ! | GTGTCTGGAATGTCACCAAG+CGG | + | chr1.2:53134977-53134996 | MS.gene50640:CDS | 50.0% |
| ! | TGTCTGGAATGTCACCAAGC+GGG | + | chr1.2:53134978-53134997 | MS.gene50640:CDS | 50.0% |
| !! | CATGGTGGAAGGTGCTACAT+TGG | + | chr1.2:53136063-53136082 | MS.gene50640:CDS | 50.0% |
| AATGTCACCAAGCGGGCCAT+TGG | + | chr1.2:53134985-53135004 | MS.gene50640:CDS | 55.0% | |
| AGTCCTGAGGTAGGTGGCTA+AGG | - | chr1.2:53134869-53134888 | None:intergenic | 55.0% | |
| CCCCAAACCTGGTTTCATGG+TGG | + | chr1.2:53136048-53136067 | MS.gene50640:CDS | 55.0% | |
| GCACCTTCCACCATGAAACC+AGG | - | chr1.2:53136058-53136077 | None:intergenic | 55.0% | |
| GGTGACATTCCAGACACGAC+CGG | - | chr1.2:53134974-53134993 | None:intergenic | 55.0% | |
| GGTGCTTATCACCTCTCCCT+TGG | - | chr1.2:53136011-53136030 | None:intergenic | 55.0% | |
| TCTCGTCCCTTCCGCAAGAA+GGG | + | chr1.2:53134835-53134854 | MS.gene50640:CDS | 55.0% | |
| ! | TAGCCTTAGCCACCTACCTC+AGG | + | chr1.2:53134863-53134882 | MS.gene50640:CDS | 55.0% |
| AAGCACCAAGCGCAAGCCAG+AGG | + | chr1.2:53136024-53136043 | MS.gene50640:CDS | 60.0% | |
| AAGGCCGAGGCTAAGGCCAA+GGG | + | chr1.2:53135992-53136011 | MS.gene50640:CDS | 60.0% | |
| AGCACCAAGCGCAAGCCAGA+GGG | + | chr1.2:53136025-53136044 | MS.gene50640:CDS | 60.0% | |
| CTCTCGTCCCTTCCGCAAGA+AGG | + | chr1.2:53134834-53134853 | MS.gene50640:CDS | 60.0% | |
| GGGCCCCAAACCTGGTTTCA+TGG | + | chr1.2:53136045-53136064 | MS.gene50640:CDS | 60.0% | |
| TTCGACACCAATGGCCCGCT+TGG | - | chr1.2:53134995-53135014 | None:intergenic | 60.0% | |
| ! | AAACCAGGTTTGGGGCCCTC+TGG | - | chr1.2:53136043-53136062 | None:intergenic | 60.0% |
| !! | CTCTCCCTTGGCCTTAGCCT+CGG | - | chr1.2:53135999-53136018 | None:intergenic | 60.0% |
| AAGCCAGAGGGCCCCAAACC+TGG | + | chr1.2:53136037-53136056 | MS.gene50640:CDS | 65.0% | |
| AGACACGACCGGTACGACCG+TGG | - | chr1.2:53134963-53134982 | None:intergenic | 65.0% | |
| CGAGGCTAAGGCCAAGGGAG+AGG | + | chr1.2:53135997-53136016 | MS.gene50640:CDS | 65.0% | |
| GAAGGCCGAGGCTAAGGCCA+AGG | + | chr1.2:53135991-53136010 | MS.gene50640:CDS | 65.0% | |
| ! | ACGGTCGTACCGGTCGTGTC+TGG | + | chr1.2:53134962-53134981 | MS.gene50640:CDS | 65.0% |
| ! | GGGGCCCTCTGGCTTGCGCT+TGG | - | chr1.2:53136032-53136051 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53134790 | 53136141 | 53134790 | ID=MS.gene50640 |
| chr1.2 | mRNA | 53134790 | 53136141 | 53134790 | ID=MS.gene50640.t1;Parent=MS.gene50640 |
| chr1.2 | exon | 53134790 | 53135026 | 53134790 | ID=MS.gene50640.t1.exon1;Parent=MS.gene50640.t1 |
| chr1.2 | CDS | 53134790 | 53135026 | 53134790 | ID=cds.MS.gene50640.t1;Parent=MS.gene50640.t1 |
| chr1.2 | exon | 53135884 | 53136141 | 53135884 | ID=MS.gene50640.t1.exon2;Parent=MS.gene50640.t1 |
| chr1.2 | CDS | 53135884 | 53136141 | 53135884 | ID=cds.MS.gene50640.t1;Parent=MS.gene50640.t1 |
| Gene Sequence |
| Protein sequence |
