Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53955.t1 | XP_024627631.1 | 72.1 | 408 | 60 | 2 | 1 | 354 | 85 | 492 | 4.50E-153 | 550.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53955.t1 | Q9SKU6 | 30.4 | 378 | 200 | 6 | 1 | 322 | 96 | 466 | 1.5e-48 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53955.t1 | A0A072TQ66 | 72.1 | 408 | 60 | 2 | 1 | 354 | 85 | 492 | 3.3e-153 | 550.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene53955 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene53955 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene53955 | 0.824783 | 6.69E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene53955 | 0.80326 | 3.79E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene53955 | 0.811822 | 5.78E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene53955 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene53955 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene53955 | 0.821285 | 4.38E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene53955 | 0.804127 | 2.51E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene53955 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene53955 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene53955 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene052866 | MS.gene53955 | 0.869513 | 2.93E-66 | -1.69E-46 |
| MS.gene052867 | MS.gene53955 | 0.93935 | 1.47E-99 | -1.69E-46 |
| MS.gene053166 | MS.gene53955 | 0.82416 | 9.38E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene53955 | 0.803756 | 2.99E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene53955 | 0.82496 | 6.08E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene53955 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene054160 | MS.gene53955 | 0.818648 | 1.76E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene53955 | 0.840074 | 1.08E-57 | -1.69E-46 |
| MS.gene054291 | MS.gene53955 | -0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene53955 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene53955 | 0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene53955 | 0.819674 | 1.03E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene53955 | 0.802891 | 4.52E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene53955 | 0.818806 | 1.62E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene53955 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene53955 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene53955 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene055589 | MS.gene53955 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene53955 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene53955 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene53955 | 0.829242 | 5.74E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene53955 | 0.818347 | 2.05E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene53955 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene53955 | 0.805151 | 1.53E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene53955 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene53955 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene53955 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene53955 | 0.818228 | 2.19E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene53955 | 0.816658 | 4.94E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene53955 | 0.838798 | 2.32E-57 | -1.69E-46 |
| MS.gene059382 | MS.gene53955 | 0.842801 | 2.07E-58 | -1.69E-46 |
| MS.gene059550 | MS.gene53955 | 0.80165 | 8.15E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene53955 | 0.80481 | 1.81E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene53955 | 0.819067 | 1.41E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene53955 | -0.826045 | 3.36E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene53955 | 0.808096 | 3.66E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene53955 | -0.810592 | 1.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53955.t1 | MTR_8g465890 | 79.167 | 408 | 31 | 2 | 1 | 354 | 85 | 492 | 0.0 | 628 |
| MS.gene53955.t1 | MTR_2g047855 | 70.073 | 411 | 61 | 6 | 1 | 354 | 89 | 494 | 0.0 | 540 |
| MS.gene53955.t1 | MTR_2g090290 | 40.741 | 378 | 160 | 4 | 12 | 328 | 101 | 475 | 3.00e-85 | 266 |
| MS.gene53955.t1 | MTR_8g069570 | 27.119 | 354 | 197 | 7 | 4 | 299 | 83 | 433 | 2.37e-32 | 126 |
| MS.gene53955.t1 | MTR_8g059115 | 24.566 | 403 | 239 | 10 | 1 | 344 | 1 | 397 | 5.47e-31 | 121 |
| MS.gene53955.t1 | MTR_8g007375 | 24.444 | 360 | 207 | 8 | 7 | 307 | 8 | 361 | 1.14e-27 | 112 |
| MS.gene53955.t1 | MTR_1g072300 | 27.596 | 366 | 204 | 8 | 1 | 309 | 95 | 456 | 3.37e-26 | 109 |
| MS.gene53955.t1 | MTR_2g013450 | 27.445 | 317 | 172 | 7 | 15 | 276 | 100 | 413 | 7.50e-24 | 102 |
| MS.gene53955.t1 | MTR_3g099753 | 24.259 | 371 | 206 | 11 | 1 | 306 | 95 | 455 | 9.76e-21 | 93.6 |
| MS.gene53955.t1 | MTR_3g099753 | 24.259 | 371 | 206 | 11 | 1 | 306 | 119 | 479 | 1.50e-20 | 93.2 |
| MS.gene53955.t1 | MTR_1g022400 | 29.224 | 219 | 125 | 4 | 1 | 192 | 112 | 327 | 5.37e-19 | 87.8 |
| MS.gene53955.t1 | MTR_1g086820 | 23.782 | 349 | 197 | 8 | 5 | 293 | 92 | 431 | 2.67e-17 | 83.2 |
| MS.gene53955.t1 | MTR_7g089770 | 22.992 | 361 | 220 | 9 | 1 | 310 | 214 | 567 | 3.88e-15 | 77.0 |
| MS.gene53955.t1 | MTR_8g031520 | 30.303 | 132 | 84 | 3 | 11 | 139 | 173 | 299 | 2.57e-12 | 67.0 |
| MS.gene53955.t1 | MTR_7g091470 | 21.723 | 267 | 175 | 8 | 37 | 299 | 389 | 625 | 5.43e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53955.t1 | AT2G20710 | 30.685 | 365 | 193 | 5 | 1 | 309 | 1 | 361 | 1.85e-57 | 191 |
| MS.gene53955.t1 | AT2G20710 | 30.685 | 365 | 193 | 5 | 1 | 309 | 96 | 456 | 2.65e-56 | 191 |
| MS.gene53955.t1 | AT1G60770 | 29.972 | 357 | 186 | 9 | 4 | 299 | 83 | 436 | 4.03e-39 | 145 |
| MS.gene53955.t1 | AT1G02150 | 24.936 | 389 | 223 | 10 | 7 | 330 | 132 | 516 | 7.52e-30 | 120 |
| MS.gene53955.t1 | AT5G27460 | 26.016 | 369 | 204 | 8 | 1 | 306 | 96 | 458 | 1.15e-28 | 116 |
| MS.gene53955.t1 | AT4G21705 | 27.273 | 319 | 168 | 9 | 15 | 274 | 97 | 410 | 3.43e-25 | 106 |
| MS.gene53955.t1 | AT4G01990 | 25.137 | 366 | 210 | 7 | 5 | 312 | 101 | 460 | 3.76e-23 | 100 |
| MS.gene53955.t1 | AT1G28020 | 27.826 | 345 | 196 | 9 | 1 | 311 | 94 | 419 | 8.86e-20 | 90.9 |
| MS.gene53955.t1 | AT5G09450 | 36.301 | 146 | 90 | 2 | 12 | 156 | 124 | 267 | 1.29e-17 | 84.0 |
| MS.gene53955.t1 | AT4G02820 | 22.606 | 376 | 222 | 6 | 1 | 317 | 119 | 484 | 2.66e-17 | 83.6 |
| MS.gene53955.t1 | AT1G02370 | 27.459 | 244 | 141 | 7 | 4 | 220 | 131 | 365 | 5.26e-17 | 82.4 |
| MS.gene53955.t1 | AT3G11380 | 25.478 | 314 | 197 | 11 | 4 | 297 | 103 | 399 | 4.71e-13 | 70.5 |
| MS.gene53955.t1 | AT3G11380 | 34.752 | 141 | 86 | 4 | 1 | 138 | 404 | 541 | 3.79e-12 | 67.8 |
| MS.gene53955.t1 | AT1G80270 | 22.466 | 365 | 210 | 11 | 5 | 310 | 190 | 540 | 5.87e-11 | 64.3 |
| MS.gene53955.t1 | AT1G80270 | 22.466 | 365 | 210 | 11 | 5 | 310 | 190 | 540 | 5.87e-11 | 64.3 |
| MS.gene53955.t1 | AT1G80270 | 22.466 | 365 | 210 | 11 | 5 | 310 | 190 | 540 | 5.87e-11 | 64.3 |
| MS.gene53955.t1 | AT1G80270 | 22.466 | 365 | 210 | 11 | 5 | 310 | 190 | 540 | 5.87e-11 | 64.3 |
| MS.gene53955.t1 | AT1G80270 | 22.466 | 365 | 210 | 11 | 5 | 310 | 190 | 540 | 5.87e-11 | 64.3 |
Find 70 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAAGTCTTGTTCATTAT+TGG | 0.158338 | 4.2:-60147307 | None:intergenic |
| ATATCTTGCAAAAGCTTAAA+TGG | 0.210725 | 4.2:+60147720 | MS.gene53955:CDS |
| ATACATGCAGCAAAAGTAAA+TGG | 0.236659 | 4.2:-60148072 | None:intergenic |
| AGAAACCTTCATTTATTATC+AGG | 0.259070 | 4.2:+60147096 | MS.gene53955:CDS |
| GTAAATTAGATGGAAGAATA+TGG | 0.272444 | 4.2:+60147947 | MS.gene53955:CDS |
| AGGATGATGTGTATAGAATT+TGG | 0.279819 | 4.2:+60147696 | MS.gene53955:CDS |
| GTATGCTGCTATTGGGAAAA+AGG | 0.284030 | 4.2:+60147676 | MS.gene53955:CDS |
| TCAAAAGATTTCAAGGTCTA+TGG | 0.286344 | 4.2:+60147204 | MS.gene53955:CDS |
| CTAACTAAGTATGCTGCTAT+TGG | 0.295443 | 4.2:+60147668 | MS.gene53955:CDS |
| AAAAGAGATGGTAAATTAGA+TGG | 0.307752 | 4.2:+60147937 | MS.gene53955:CDS |
| TACAATGAAGAAAGCAATAT+TGG | 0.324291 | 4.2:+60148023 | MS.gene53955:CDS |
| AGATGAGATGGAGAAGTTAT+TGG | 0.339068 | 4.2:+60147479 | MS.gene53955:CDS |
| ACACACTTCAAAAGATTTCA+AGG | 0.352580 | 4.2:+60147197 | MS.gene53955:CDS |
| CATGAAAGAAAAGAGAGATT+TGG | 0.367770 | 4.2:+60148101 | MS.gene53955:CDS |
| GCGATACGTCTCACCTTGAT+AGG | 0.373282 | 4.2:+60147126 | MS.gene53955:CDS |
| GAGTTGGCATTGGAGATTCT+TGG | 0.376634 | 4.2:+60148123 | MS.gene53955:CDS |
| CTATTATAAGTATAACGATA+TGG | 0.383667 | 4.2:+60147987 | MS.gene53955:CDS |
| TTCTGTTAAAGCTCTATTCT+CGG | 0.395487 | 4.2:+60147343 | MS.gene53955:CDS |
| GGAGAAGTTATTGGCGAAGA+TGG | 0.400331 | 4.2:+60147488 | MS.gene53955:CDS |
| GAGAGATTTGGAGTTGGCAT+TGG | 0.400920 | 4.2:+60148113 | MS.gene53955:CDS |
| AAATCTGAACAGTTGATTAG+AGG | 0.401555 | 4.2:+60147614 | MS.gene53955:intron |
| ATCACAACATAACTTTGAAC+TGG | 0.405001 | 4.2:+60147517 | MS.gene53955:CDS |
| AGTTGGCATTGGAGATTCTT+GGG | 0.423822 | 4.2:+60148124 | MS.gene53955:CDS |
| GTTAGTGCTTATTGTAAGAA+TGG | 0.429380 | 4.2:+60147874 | MS.gene53955:CDS |
| TGGAAGAATATGGGATCGTT+TGG | 0.441147 | 4.2:+60147957 | MS.gene53955:CDS |
| TAACTAAGTATGCTGCTATT+GGG | 0.452411 | 4.2:+60147669 | MS.gene53955:CDS |
| CTTGGGACGTGTAGGGAACT+AGG | 0.453871 | 4.2:+60148141 | MS.gene53955:CDS |
| TAAGAATGGTATGTTGGAAA+AGG | 0.454505 | 4.2:+60147888 | MS.gene53955:CDS |
| TGACATTAACATAGAAATGT+AGG | 0.489387 | 4.2:-60147757 | None:intergenic |
| ACAGTTCCACACTTACTAGT+TGG | 0.490146 | 4.2:+60147427 | MS.gene53955:CDS |
| AGAAAAGAGAGATTTGGAGT+TGG | 0.495030 | 4.2:+60148107 | MS.gene53955:CDS |
| ACATAGAAATGTAGGTTGAA+TGG | 0.502220 | 4.2:-60147749 | None:intergenic |
| TACATGCAGCAAAAGTAAAT+GGG | 0.502567 | 4.2:-60148071 | None:intergenic |
| TAAATTAGATGGAAGAATAT+GGG | 0.509804 | 4.2:+60147948 | MS.gene53955:CDS |
| TGGAGATTCTTGGGACGTGT+AGG | 0.512268 | 4.2:+60148133 | MS.gene53955:CDS |
| GAAAAGGCAGAAGCATATGT+TGG | 0.512700 | 4.2:+60147904 | MS.gene53955:CDS |
| CACAATACAACTCTGTTGAG+AGG | 0.513284 | 4.2:+60147247 | MS.gene53955:CDS |
| TTCCAATAATGAACAAGACT+TGG | 0.528671 | 4.2:+60147305 | MS.gene53955:CDS |
| ACCGCGGACTTTACCTATCA+AGG | 0.528914 | 4.2:-60147139 | None:intergenic |
| TACTAGTAACATAGATGAGA+TGG | 0.529015 | 4.2:+60147467 | MS.gene53955:CDS |
| TTAAAGCTCTATTCTCGGAC+AGG | 0.530539 | 4.2:+60147348 | MS.gene53955:CDS |
| GGAGATTCTTGGGACGTGTA+GGG | 0.531898 | 4.2:+60148134 | MS.gene53955:CDS |
| GACAGGCCAACATGAGAAGT+TGG | 0.534670 | 4.2:+60147365 | MS.gene53955:CDS |
| GCAGCAAAAGTAAATGGGTA+AGG | 0.548795 | 4.2:-60148066 | None:intergenic |
| ATTGATGAAGTGCCGGTGGA+TGG | 0.549081 | 4.2:+60148267 | MS.gene53955:CDS |
| TAGAAATGTAGGTTGAATGG+TGG | 0.556781 | 4.2:-60147746 | None:intergenic |
| TATCTCCTGATAATAAATGA+AGG | 0.557018 | 4.2:-60147101 | None:intergenic |
| TATTGGCAAGTCCACAAGGA+TGG | 0.562473 | 4.2:+60148040 | MS.gene53955:CDS |
| AAAAGGCAGAAGCATATGTT+GGG | 0.563161 | 4.2:+60147905 | MS.gene53955:CDS |
| ATATGGGATCGTTTGGCGCA+TGG | 0.569764 | 4.2:+60147964 | MS.gene53955:CDS |
| AATGCATTGAAACTATTGAA+AGG | 0.583348 | 4.2:+60148228 | MS.gene53955:CDS |
| ATGTCAGAATTCCAATGTGA+TGG | 0.583892 | 4.2:+60147852 | MS.gene53955:intron |
| GAGCAACCAACTTCTCATGT+TGG | 0.593793 | 4.2:-60147371 | None:intergenic |
| TTATTGTAAGAATGGTATGT+TGG | 0.595840 | 4.2:+60147882 | MS.gene53955:CDS |
| GGGTAAGGTTTCCATCCTTG+TGG | 0.602793 | 4.2:-60148051 | None:intergenic |
| AGAAATGTAGGTTGAATGGT+GGG | 0.604581 | 4.2:-60147745 | None:intergenic |
| GCAATATTGGCAAGTCCACA+AGG | 0.607044 | 4.2:+60148036 | MS.gene53955:CDS |
| ATAATTTATCAACTCATCAC+AGG | 0.610232 | 4.2:-60148181 | None:intergenic |
| TCTGAGGATTGATGAAGTGC+CGG | 0.623064 | 4.2:+60148260 | MS.gene53955:CDS |
| ACAATACAACTCTGTTGAGA+GGG | 0.624448 | 4.2:+60147248 | MS.gene53955:CDS |
| TGAAAGGAGATTATCATCTG+AGG | 0.625770 | 4.2:+60148244 | MS.gene53955:CDS |
| TGTTGCTCCTCTCCATCCAC+CGG | 0.627694 | 4.2:-60148279 | None:intergenic |
| ATAAGCACTAACCATCACAT+TGG | 0.630205 | 4.2:-60147863 | None:intergenic |
| ATTGAGCCAACTAGTAAGTG+TGG | 0.661729 | 4.2:-60147433 | None:intergenic |
| AGGCAGAAGCATATGTTGGG+AGG | 0.666399 | 4.2:+60147908 | MS.gene53955:CDS |
| GAGGATTGATGAAGTGCCGG+TGG | 0.670912 | 4.2:+60148263 | MS.gene53955:CDS |
| TGAAGTGCCGGTGGATGGAG+AGG | 0.684802 | 4.2:+60148272 | MS.gene53955:CDS |
| GAGTTGATAAATTATGTGCA+AGG | 0.689053 | 4.2:+60148189 | MS.gene53955:CDS |
| TCTCTGCTTGATCTAGACCG+CGG | 0.698359 | 4.2:-60147155 | None:intergenic |
| ACCTTGATAGGTAAAGTCCG+CGG | 0.730817 | 4.2:+60147138 | MS.gene53955:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATAAGTATAACGATA+TGG | + | chr4.2:60147987-60148006 | MS.gene53955:CDS | 20.0% |
| !! | TAAATTAGATGGAAGAATAT+GGG | + | chr4.2:60147948-60147967 | MS.gene53955:CDS | 20.0% |
| ! | AAAAGAGATGGTAAATTAGA+TGG | + | chr4.2:60147937-60147956 | MS.gene53955:CDS | 25.0% |
| ! | AATGCATTGAAACTATTGAA+AGG | + | chr4.2:60148228-60148247 | MS.gene53955:CDS | 25.0% |
| ! | AGAAACCTTCATTTATTATC+AGG | + | chr4.2:60147096-60147115 | MS.gene53955:CDS | 25.0% |
| ! | ATAATTTATCAACTCATCAC+AGG | - | chr4.2:60148184-60148203 | None:intergenic | 25.0% |
| ! | ATATCTTGCAAAAGCTTAAA+TGG | + | chr4.2:60147720-60147739 | MS.gene53955:CDS | 25.0% |
| ! | GTAAATTAGATGGAAGAATA+TGG | + | chr4.2:60147947-60147966 | MS.gene53955:CDS | 25.0% |
| ! | TACAATGAAGAAAGCAATAT+TGG | + | chr4.2:60148023-60148042 | MS.gene53955:CDS | 25.0% |
| ! | TATCTCCTGATAATAAATGA+AGG | - | chr4.2:60147104-60147123 | None:intergenic | 25.0% |
| ! | TGACATTAACATAGAAATGT+AGG | - | chr4.2:60147760-60147779 | None:intergenic | 25.0% |
| ! | TTATTGTAAGAATGGTATGT+TGG | + | chr4.2:60147882-60147901 | MS.gene53955:CDS | 25.0% |
| AAATCTGAACAGTTGATTAG+AGG | + | chr4.2:60147614-60147633 | MS.gene53955:intron | 30.0% | |
| ACACACTTCAAAAGATTTCA+AGG | + | chr4.2:60147197-60147216 | MS.gene53955:CDS | 30.0% | |
| AGGATGATGTGTATAGAATT+TGG | + | chr4.2:60147696-60147715 | MS.gene53955:CDS | 30.0% | |
| ATACATGCAGCAAAAGTAAA+TGG | - | chr4.2:60148075-60148094 | None:intergenic | 30.0% | |
| ATCACAACATAACTTTGAAC+TGG | + | chr4.2:60147517-60147536 | MS.gene53955:CDS | 30.0% | |
| CATGAAAGAAAAGAGAGATT+TGG | + | chr4.2:60148101-60148120 | MS.gene53955:CDS | 30.0% | |
| GTTAGTGCTTATTGTAAGAA+TGG | + | chr4.2:60147874-60147893 | MS.gene53955:CDS | 30.0% | |
| TAACTAAGTATGCTGCTATT+GGG | + | chr4.2:60147669-60147688 | MS.gene53955:CDS | 30.0% | |
| TAAGAATGGTATGTTGGAAA+AGG | + | chr4.2:60147888-60147907 | MS.gene53955:CDS | 30.0% | |
| TACATGCAGCAAAAGTAAAT+GGG | - | chr4.2:60148074-60148093 | None:intergenic | 30.0% | |
| TACTAGTAACATAGATGAGA+TGG | + | chr4.2:60147467-60147486 | MS.gene53955:CDS | 30.0% | |
| TCAAAAGATTTCAAGGTCTA+TGG | + | chr4.2:60147204-60147223 | MS.gene53955:CDS | 30.0% | |
| TCGAATCTAAATGACATTGA+TGG | + | chr4.2:60147783-60147802 | MS.gene53955:intron | 30.0% | |
| TTCCAATAATGAACAAGACT+TGG | + | chr4.2:60147305-60147324 | MS.gene53955:CDS | 30.0% | |
| TTCTGTTAAAGCTCTATTCT+CGG | + | chr4.2:60147343-60147362 | MS.gene53955:CDS | 30.0% | |
| ! | ACATAGAAATGTAGGTTGAA+TGG | - | chr4.2:60147752-60147771 | None:intergenic | 30.0% |
| ! | GCTGATGGATATATTAAAGT+TGG | + | chr4.2:60147559-60147578 | MS.gene53955:intron | 30.0% |
| !! | GAGTTGATAAATTATGTGCA+AGG | + | chr4.2:60148189-60148208 | MS.gene53955:CDS | 30.0% |
| !! | TACCAAGTCTTGTTCATTAT+TGG | - | chr4.2:60147310-60147329 | None:intergenic | 30.0% |
| !!! | TTGAAATCTTTTGAAGTGTG+TGG | - | chr4.2:60147198-60147217 | None:intergenic | 30.0% |
| ACAATACAACTCTGTTGAGA+GGG | + | chr4.2:60147248-60147267 | MS.gene53955:CDS | 35.0% | |
| AGATGAGATGGAGAAGTTAT+TGG | + | chr4.2:60147479-60147498 | MS.gene53955:CDS | 35.0% | |
| ATAAGCACTAACCATCACAT+TGG | - | chr4.2:60147866-60147885 | None:intergenic | 35.0% | |
| ATGTCAGAATTCCAATGTGA+TGG | + | chr4.2:60147852-60147871 | MS.gene53955:intron | 35.0% | |
| CTAACTAAGTATGCTGCTAT+TGG | + | chr4.2:60147668-60147687 | MS.gene53955:CDS | 35.0% | |
| TAAAGTTGGCCAATTTGACA+AGG | + | chr4.2:60147573-60147592 | MS.gene53955:intron | 35.0% | |
| TGAAAGGAGATTATCATCTG+AGG | + | chr4.2:60148244-60148263 | MS.gene53955:CDS | 35.0% | |
| ! | AAAAGGCAGAAGCATATGTT+GGG | + | chr4.2:60147905-60147924 | MS.gene53955:CDS | 35.0% |
| ! | AGAAAAGAGAGATTTGGAGT+TGG | + | chr4.2:60148107-60148126 | MS.gene53955:CDS | 35.0% |
| ! | AGAAATGTAGGTTGAATGGT+GGG | - | chr4.2:60147748-60147767 | None:intergenic | 35.0% |
| ! | TAGAAATGTAGGTTGAATGG+TGG | - | chr4.2:60147749-60147768 | None:intergenic | 35.0% |
| ACAGTTCCACACTTACTAGT+TGG | + | chr4.2:60147427-60147446 | MS.gene53955:CDS | 40.0% | |
| ATTGAGCCAACTAGTAAGTG+TGG | - | chr4.2:60147436-60147455 | None:intergenic | 40.0% | |
| CACAATACAACTCTGTTGAG+AGG | + | chr4.2:60147247-60147266 | MS.gene53955:CDS | 40.0% | |
| CTATCAACGCCTTGTCAAAT+TGG | - | chr4.2:60147585-60147604 | None:intergenic | 40.0% | |
| GCAGCAAAAGTAAATGGGTA+AGG | - | chr4.2:60148069-60148088 | None:intergenic | 40.0% | |
| GTATGCTGCTATTGGGAAAA+AGG | + | chr4.2:60147676-60147695 | MS.gene53955:CDS | 40.0% | |
| TGGAAGAATATGGGATCGTT+TGG | + | chr4.2:60147957-60147976 | MS.gene53955:CDS | 40.0% | |
| TTAAAGCTCTATTCTCGGAC+AGG | + | chr4.2:60147348-60147367 | MS.gene53955:CDS | 40.0% | |
| ! | AGTTGGCATTGGAGATTCTT+GGG | + | chr4.2:60148124-60148143 | MS.gene53955:CDS | 40.0% |
| ! | ATTCTAGAGGAATGGGAATC+TGG | + | chr4.2:60147816-60147835 | MS.gene53955:intron | 40.0% |
| ! | GAAAAGGCAGAAGCATATGT+TGG | + | chr4.2:60147904-60147923 | MS.gene53955:CDS | 40.0% |
| ! | TGAGACGATTCTAGAGGAAT+GGG | + | chr4.2:60147809-60147828 | MS.gene53955:intron | 40.0% |
| !! | GGGAGGCTTTTAAAAAGAGA+TGG | + | chr4.2:60147925-60147944 | MS.gene53955:CDS | 40.0% |
| ACCTTGATAGGTAAAGTCCG+CGG | + | chr4.2:60147138-60147157 | MS.gene53955:CDS | 45.0% | |
| ACGTATTCTGCTGTTGCTGA+TGG | + | chr4.2:60147544-60147563 | MS.gene53955:intron | 45.0% | |
| GAGCAACCAACTTCTCATGT+TGG | - | chr4.2:60147374-60147393 | None:intergenic | 45.0% | |
| GCAATATTGGCAAGTCCACA+AGG | + | chr4.2:60148036-60148055 | MS.gene53955:CDS | 45.0% | |
| GGAGAAGTTATTGGCGAAGA+TGG | + | chr4.2:60147488-60147507 | MS.gene53955:CDS | 45.0% | |
| TATTGGCAAGTCCACAAGGA+TGG | + | chr4.2:60148040-60148059 | MS.gene53955:CDS | 45.0% | |
| TCTGAGGATTGATGAAGTGC+CGG | + | chr4.2:60148260-60148279 | MS.gene53955:CDS | 45.0% | |
| ! | CTGAGACGATTCTAGAGGAA+TGG | + | chr4.2:60147808-60147827 | MS.gene53955:intron | 45.0% |
| ! | GAGAGATTTGGAGTTGGCAT+TGG | + | chr4.2:60148113-60148132 | MS.gene53955:CDS | 45.0% |
| ! | GAGTTGGCATTGGAGATTCT+TGG | + | chr4.2:60148123-60148142 | MS.gene53955:CDS | 45.0% |
| ACCGCGGACTTTACCTATCA+AGG | - | chr4.2:60147142-60147161 | None:intergenic | 50.0% | |
| ATATGGGATCGTTTGGCGCA+TGG | + | chr4.2:60147964-60147983 | MS.gene53955:CDS | 50.0% | |
| CAGCAACAGCAGAATACGTG+AGG | - | chr4.2:60147543-60147562 | None:intergenic | 50.0% | |
| GACAGGCCAACATGAGAAGT+TGG | + | chr4.2:60147365-60147384 | MS.gene53955:CDS | 50.0% | |
| GCGATACGTCTCACCTTGAT+AGG | + | chr4.2:60147126-60147145 | MS.gene53955:CDS | 50.0% | |
| GGAGATTCTTGGGACGTGTA+GGG | + | chr4.2:60148134-60148153 | MS.gene53955:CDS | 50.0% | |
| GGGTAAGGTTTCCATCCTTG+TGG | - | chr4.2:60148054-60148073 | None:intergenic | 50.0% | |
| TCTCTGCTTGATCTAGACCG+CGG | - | chr4.2:60147158-60147177 | None:intergenic | 50.0% | |
| TGGAGATTCTTGGGACGTGT+AGG | + | chr4.2:60148133-60148152 | MS.gene53955:CDS | 50.0% | |
| TGGAGCTGAGACGATTCTAG+AGG | + | chr4.2:60147803-60147822 | MS.gene53955:intron | 50.0% | |
| ! | AGGCAGAAGCATATGTTGGG+AGG | + | chr4.2:60147908-60147927 | MS.gene53955:CDS | 50.0% |
| !! | ATTGATGAAGTGCCGGTGGA+TGG | + | chr4.2:60148267-60148286 | MS.gene53955:CDS | 50.0% |
| CTTGGGACGTGTAGGGAACT+AGG | + | chr4.2:60148141-60148160 | MS.gene53955:CDS | 55.0% | |
| TGTTGCTCCTCTCCATCCAC+CGG | - | chr4.2:60148282-60148301 | None:intergenic | 55.0% | |
| !! | GAGGATTGATGAAGTGCCGG+TGG | + | chr4.2:60148263-60148282 | MS.gene53955:CDS | 55.0% |
| !! | TGAAGTGCCGGTGGATGGAG+AGG | + | chr4.2:60148272-60148291 | MS.gene53955:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 60147084 | 60148311 | 60147084 | ID=MS.gene53955 |
| chr4.2 | mRNA | 60147084 | 60148311 | 60147084 | ID=MS.gene53955.t1;Parent=MS.gene53955 |
| chr4.2 | exon | 60147084 | 60147545 | 60147084 | ID=MS.gene53955.t1.exon1;Parent=MS.gene53955.t1 |
| chr4.2 | CDS | 60147084 | 60147545 | 60147084 | ID=cds.MS.gene53955.t1;Parent=MS.gene53955.t1 |
| chr4.2 | exon | 60147626 | 60147775 | 60147626 | ID=MS.gene53955.t1.exon2;Parent=MS.gene53955.t1 |
| chr4.2 | CDS | 60147626 | 60147775 | 60147626 | ID=cds.MS.gene53955.t1;Parent=MS.gene53955.t1 |
| chr4.2 | exon | 60147859 | 60148311 | 60147859 | ID=MS.gene53955.t1.exon3;Parent=MS.gene53955.t1 |
| chr4.2 | CDS | 60147859 | 60148311 | 60147859 | ID=cds.MS.gene53955.t1;Parent=MS.gene53955.t1 |
| Gene Sequence |
| Protein sequence |
