Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54704.t1 | XP_013450874.1 | 94.6 | 577 | 29 | 1 | 1 | 575 | 1 | 577 | 0.00E+00 | 1082.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54704.t1 | Q4F883 | 38.0 | 574 | 286 | 20 | 8 | 568 | 18 | 534 | 1.1e-83 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54704.t1 | A0A072U5B0 | 94.6 | 577 | 29 | 1 | 1 | 575 | 1 | 577 | 0.0e+00 | 1082.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene54704 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene54704 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene54704 | 0.813586 | 2.38E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene54704 | 0.805927 | 1.05E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene54704 | 0.805192 | 1.50E-49 | -1.69E-46 |
| MS.gene051121 | MS.gene54704 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene54704 | 0.805596 | 1.24E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene54704 | 0.825129 | 5.55E-54 | -1.69E-46 |
| MS.gene051848 | MS.gene54704 | -0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene54704 | 0.823276 | 1.51E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene54704 | 0.815629 | 8.38E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene54704 | 0.821051 | 4.96E-53 | -1.69E-46 |
| MS.gene052686 | MS.gene54704 | 0.806786 | 6.95E-50 | -1.69E-46 |
| MS.gene053094 | MS.gene54704 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene053963 | MS.gene54704 | 0.819898 | 9.12E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene54704 | 0.81773 | 2.83E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene54704 | 0.859447 | 4.11E-63 | -1.69E-46 |
| MS.gene054893 | MS.gene54704 | 0.853505 | 2.29E-61 | -1.69E-46 |
| MS.gene055141 | MS.gene54704 | 0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene05624 | MS.gene54704 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene54704 | 0.822069 | 2.89E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene54704 | 0.824636 | 7.25E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene54704 | 0.81372 | 2.22E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene54704 | 0.843169 | 1.65E-58 | -1.69E-46 |
| MS.gene058095 | MS.gene54704 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene54704 | 0.826228 | 3.04E-54 | -1.69E-46 |
| MS.gene058592 | MS.gene54704 | 0.83536 | 1.76E-56 | -1.69E-46 |
| MS.gene05878 | MS.gene54704 | 0.817399 | 3.37E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene54704 | 0.832794 | 7.71E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene54704 | 0.828882 | 7.02E-55 | -1.69E-46 |
| MS.gene059774 | MS.gene54704 | 0.861649 | 8.85E-64 | -1.69E-46 |
| MS.gene05985 | MS.gene54704 | -0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene54704 | -0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene060338 | MS.gene54704 | 0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene060412 | MS.gene54704 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene54704 | 0.858295 | 9.09E-63 | -1.69E-46 |
| MS.gene060716 | MS.gene54704 | 0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene54704 | 0.800108 | 1.68E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene54704 | 0.817585 | 3.06E-52 | -1.69E-46 |
| MS.gene061047 | MS.gene54704 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene54704 | 0.821629 | 3.65E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54704.t1 | MTR_6g007975 | 94.627 | 577 | 29 | 1 | 1 | 575 | 1 | 577 | 0.0 | 1118 |
| MS.gene54704.t1 | MTR_6g008015 | 82.038 | 579 | 99 | 3 | 1 | 575 | 1 | 578 | 0.0 | 973 |
| MS.gene54704.t1 | MTR_6g008055 | 77.055 | 584 | 116 | 5 | 1 | 575 | 1 | 575 | 0.0 | 890 |
| MS.gene54704.t1 | MTR_6g007985 | 79.956 | 454 | 88 | 2 | 124 | 575 | 49 | 501 | 0.0 | 758 |
| MS.gene54704.t1 | MTR_3g467360 | 64.726 | 584 | 188 | 9 | 1 | 575 | 1 | 575 | 0.0 | 731 |
| MS.gene54704.t1 | MTR_3g467360 | 64.706 | 578 | 186 | 9 | 7 | 575 | 13 | 581 | 0.0 | 723 |
| MS.gene54704.t1 | MTR_0286s0040 | 78.242 | 455 | 27 | 3 | 124 | 575 | 2 | 387 | 0.0 | 697 |
| MS.gene54704.t1 | MTR_6g007980 | 57.385 | 589 | 222 | 14 | 1 | 574 | 1 | 575 | 0.0 | 610 |
| MS.gene54704.t1 | MTR_6g007980 | 57.288 | 590 | 222 | 15 | 1 | 574 | 1 | 576 | 0.0 | 603 |
| MS.gene54704.t1 | MTR_6g007980 | 57.191 | 591 | 222 | 15 | 1 | 574 | 1 | 577 | 0.0 | 602 |
| MS.gene54704.t1 | MTR_3g467350 | 45.941 | 579 | 212 | 14 | 1 | 575 | 1 | 482 | 1.65e-135 | 403 |
| MS.gene54704.t1 | MTR_0286s0050 | 88.889 | 126 | 12 | 1 | 1 | 124 | 1 | 126 | 9.48e-69 | 219 |
| MS.gene54704.t1 | MTR_8g494200 | 23.315 | 356 | 235 | 10 | 211 | 546 | 274 | 611 | 4.54e-23 | 103 |
| MS.gene54704.t1 | MTR_8g494200 | 45.055 | 91 | 47 | 3 | 125 | 213 | 123 | 212 | 8.04e-14 | 74.7 |
| MS.gene54704.t1 | MTR_3g079340 | 25.414 | 362 | 202 | 15 | 208 | 540 | 276 | 598 | 2.53e-19 | 92.0 |
| MS.gene54704.t1 | MTR_3g078633 | 25.419 | 358 | 210 | 14 | 208 | 540 | 275 | 600 | 7.62e-19 | 90.9 |
| MS.gene54704.t1 | MTR_3g078633 | 25.419 | 358 | 210 | 14 | 208 | 540 | 203 | 528 | 1.27e-18 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54704.t1 | AT5G14930 | 38.021 | 576 | 287 | 21 | 6 | 568 | 16 | 534 | 2.06e-102 | 320 |
| MS.gene54704.t1 | AT3G52430 | 27.465 | 426 | 279 | 10 | 134 | 546 | 112 | 520 | 1.45e-40 | 155 |
| MS.gene54704.t1 | AT5G14930 | 39.381 | 226 | 127 | 5 | 6 | 230 | 16 | 232 | 3.56e-37 | 138 |
| MS.gene54704.t1 | AT3G48080 | 25.676 | 370 | 207 | 16 | 208 | 539 | 264 | 603 | 9.62e-14 | 74.7 |
| MS.gene54704.t1 | AT3G48090 | 25.995 | 377 | 197 | 17 | 206 | 539 | 262 | 599 | 6.74e-12 | 68.9 |
| MS.gene54704.t1 | AT3G48090 | 25.995 | 377 | 197 | 17 | 206 | 539 | 154 | 491 | 9.42e-12 | 68.2 |
Find 87 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGAGGACTATGTTTA+TGG | 0.172177 | 6.1:+3977890 | MS.gene54704:CDS |
| CTTCATTTCATTCAATTTCT+TGG | 0.180934 | 6.1:-3977363 | None:intergenic |
| GAAGGATTACAAAGCTATTA+AGG | 0.207034 | 6.1:+3977979 | MS.gene54704:CDS |
| TGAGAATCCTGATTCTAATT+TGG | 0.220278 | 6.1:+3976733 | MS.gene54704:CDS |
| TGACTATAGATTCTTGCTTT+TGG | 0.226808 | 6.1:+3977786 | MS.gene54704:CDS |
| ATAAAATACTCGCAAATTAT+TGG | 0.227886 | 6.1:+3977501 | MS.gene54704:CDS |
| GTAACTCCATTGATTGTTAC+TGG | 0.252637 | 6.1:+3976440 | MS.gene54704:CDS |
| GTCACAAATTACATGCCTTT+TGG | 0.273057 | 6.1:+3976671 | MS.gene54704:CDS |
| ATATCACTATTAGATAAAAT+TGG | 0.283272 | 6.1:+3976500 | MS.gene54704:CDS |
| CCAATTAGAACTACGTGATA+TGG | 0.291561 | 6.1:-3976594 | None:intergenic |
| CCATATCACGTAGTTCTAAT+TGG | 0.302095 | 6.1:+3976594 | MS.gene54704:CDS |
| TAAAATACTCGCAAATTATT+GGG | 0.305864 | 6.1:+3977502 | MS.gene54704:CDS |
| TCAATTATTACATACAGTTT+AGG | 0.324280 | 6.1:-3974895 | None:intergenic |
| GGATTTGATTCAGCTGAGTA+TGG | 0.331009 | 6.1:+3976797 | MS.gene54704:CDS |
| GTAACAATCAATGGAGTTAC+TGG | 0.331199 | 6.1:-3976437 | None:intergenic |
| TTGAAGATTGGAAGAATCTA+TGG | 0.335987 | 6.1:-3975192 | None:intergenic |
| AGAAGAAGTGATGAAGAAAT+TGG | 0.342174 | 6.1:+3977865 | MS.gene54704:CDS |
| AGAATTTCCAAATTAGAATC+AGG | 0.346585 | 6.1:-3976740 | None:intergenic |
| AATCAAATCACTTTGAAGAT+TGG | 0.355628 | 6.1:-3975204 | None:intergenic |
| AAAGATTAAGCTGTATGGTT+TGG | 0.357357 | 6.1:+3978048 | MS.gene54704:CDS |
| ATTGTTACTGGAAGAGGTCT+TGG | 0.364904 | 6.1:+3976452 | MS.gene54704:CDS |
| AATGCAGCGCCTTCTCTTTG+AGG | 0.373682 | 6.1:-3977554 | None:intergenic |
| AAGATTAAGCTGTATGGTTT+GGG | 0.377569 | 6.1:+3978049 | MS.gene54704:CDS |
| CTATGTTTATGGTTTGCTTA+AGG | 0.380016 | 6.1:+3977901 | MS.gene54704:CDS |
| ATCCAAACACTTCAAAACTT+TGG | 0.383816 | 6.1:+3977685 | MS.gene54704:CDS |
| AACTTTGGAGGAATGGTTAG+AGG | 0.385579 | 6.1:+3977700 | MS.gene54704:CDS |
| TTTCGTAATCGCTGGCTCTT+CGG | 0.387487 | 6.1:+3977575 | MS.gene54704:CDS |
| GAAGAAATTGGTTGAATTTG+AGG | 0.391828 | 6.1:+3977877 | MS.gene54704:CDS |
| ATTACATTAAGCAAAGTTCA+TGG | 0.405021 | 6.1:+3976764 | MS.gene54704:CDS |
| GCTTGATGAGTTGAAATCTA+AGG | 0.406363 | 6.1:+3975349 | MS.gene54704:CDS |
| TGATATTAATATCAATGTAT+TGG | 0.409034 | 6.1:+3977283 | MS.gene54704:CDS |
| AAGGTTGACACCACAATTGC+TGG | 0.409913 | 6.1:+3976940 | MS.gene54704:CDS |
| ATCTGAATGGTTCCTGTCTC+CGG | 0.411357 | 6.1:-3976876 | None:intergenic |
| ACATTTGGTTCACCTCTTGT+TGG | 0.416180 | 6.1:+3976551 | MS.gene54704:CDS |
| CTTTGCCTCAAGAAAATCTC+AGG | 0.419803 | 6.1:-3977938 | None:intergenic |
| CGCAAATTATTGGGAAAAGA+TGG | 0.421689 | 6.1:+3977511 | MS.gene54704:CDS |
| TTTCAAGGATTCTTCTCTGC+TGG | 0.423938 | 6.1:+3976853 | MS.gene54704:CDS |
| CGTCCACTATGCATCACATT+TGG | 0.424108 | 6.1:+3976536 | MS.gene54704:CDS |
| ATTTCATTCAATTTCTTGGA+TGG | 0.436147 | 6.1:-3977359 | None:intergenic |
| GTTCACCTCTTGTTGGTGAC+AGG | 0.438927 | 6.1:+3976558 | MS.gene54704:CDS |
| CCATTGATTGTTACTGGAAG+AGG | 0.441737 | 6.1:+3976446 | MS.gene54704:CDS |
| GCTAATTTCATGAATGATGC+TGG | 0.443162 | 6.1:+3978025 | MS.gene54704:CDS |
| AAGGCTATAATAGTCAAATC+AGG | 0.452500 | 6.1:-3975161 | None:intergenic |
| CTTCTCTGCTGGCCGGAGAC+AGG | 0.452716 | 6.1:+3976864 | MS.gene54704:CDS |
| CTTGCAATGATCCACTTCCT+AGG | 0.461351 | 6.1:+3976642 | MS.gene54704:CDS |
| CCTCTTCCAGTAACAATCAA+TGG | 0.462937 | 6.1:-3976446 | None:intergenic |
| AAAGTTCATGGTCAAAATCA+AGG | 0.468060 | 6.1:+3976776 | MS.gene54704:CDS |
| AAGGATTACAAAGCTATTAA+GGG | 0.468996 | 6.1:+3977980 | MS.gene54704:CDS |
| ACTTCAAAACTTTGGAGGAA+TGG | 0.474242 | 6.1:+3977693 | MS.gene54704:CDS |
| CAAACACTTCAAAACTTTGG+AGG | 0.479364 | 6.1:+3977688 | MS.gene54704:CDS |
| GAATGAAATGAAGCGACATA+TGG | 0.483842 | 6.1:+3977373 | MS.gene54704:CDS |
| TGCAGTTGCAACAGACACTA+AGG | 0.485491 | 6.1:+3976921 | MS.gene54704:CDS |
| AGAATCTATGGTAGCTTCAA+AGG | 0.487090 | 6.1:-3975180 | None:intergenic |
| CGTAATCGCTGGCTCTTCGG+TGG | 0.499967 | 6.1:+3977578 | MS.gene54704:CDS |
| CAAAAGAGAAATGTTCCAAA+AGG | 0.503941 | 6.1:-3976686 | None:intergenic |
| AAGGATTCTTCTCTGCTGGC+CGG | 0.508661 | 6.1:+3976857 | MS.gene54704:CDS |
| CAGTACAAGTAAGAAGAAAG+TGG | 0.517579 | 6.1:+3977754 | MS.gene54704:CDS |
| AAAACAAGTAGAATCTGAAT+CGG | 0.517925 | 6.1:-3976711 | None:intergenic |
| GACATATGGCGCAACTTGAA+TGG | 0.517973 | 6.1:+3977387 | MS.gene54704:CDS |
| GTTACTGGAAGAGGTCTTGG+AGG | 0.526158 | 6.1:+3976455 | MS.gene54704:CDS |
| GTGTTATTAAGAGAGAAAGA+AGG | 0.532413 | 6.1:-3975293 | None:intergenic |
| GCTGGAAAGATTAAGCTGTA+TGG | 0.534665 | 6.1:+3978043 | MS.gene54704:CDS |
| CATTCAGATTCACTTGCAGT+TGG | 0.534822 | 6.1:+3976890 | MS.gene54704:CDS |
| ATAGATACATATGATGGTGT+TGG | 0.537264 | 6.1:+3975107 | MS.gene54704:CDS |
| CAACTGCAAGTGAATCTGAA+TGG | 0.537941 | 6.1:-3976889 | None:intergenic |
| ATTATCACAAAAGAGTGAAA+CGG | 0.546066 | 6.1:-3975318 | None:intergenic |
| GCGCTGCATTTCGTAATCGC+TGG | 0.548557 | 6.1:+3977567 | MS.gene54704:CDS |
| GAACTGAAGCCTCAAAGAGA+AGG | 0.549949 | 6.1:+3977545 | MS.gene54704:CDS |
| GTGACGAATAGCCTAGGAAG+TGG | 0.549954 | 6.1:-3976653 | None:intergenic |
| CAAGACATAGATACATATGA+TGG | 0.553860 | 6.1:+3975101 | MS.gene54704:CDS |
| TGGAACTACATATAGAAGAA+TGG | 0.555344 | 6.1:+3977598 | MS.gene54704:CDS |
| GGCAAAGTAGCTATATGAGT+TGG | 0.559632 | 6.1:+3977954 | MS.gene54704:CDS |
| TATTCACATACCAGCAATTG+TGG | 0.565265 | 6.1:-3976950 | None:intergenic |
| TAGCTATATGAGTTGGTGGA+AGG | 0.570581 | 6.1:+3977961 | MS.gene54704:CDS |
| AACTAGAAGACTTCATTCAA+AGG | 0.601032 | 6.1:+3977321 | MS.gene54704:CDS |
| TAATTTGTGACGAATAGCCT+AGG | 0.601348 | 6.1:-3976659 | None:intergenic |
| ATGATGGTGTTGGATTGTGT+TGG | 0.604495 | 6.1:+3975117 | MS.gene54704:CDS |
| ATACAGTTTAGGTTGTGCCA+TGG | 0.608316 | 6.1:-3974884 | None:intergenic |
| TATGATTGCAGATTTAGCAG+TGG | 0.609923 | 6.1:+3975005 | MS.gene54704:intron |
| AAAGTAGCTATATGAGTTGG+TGG | 0.616200 | 6.1:+3977957 | MS.gene54704:CDS |
| AACTTCCTGTCACCAACAAG+AGG | 0.623157 | 6.1:-3976563 | None:intergenic |
| GAACCAAATGTGATGCATAG+TGG | 0.627787 | 6.1:-3976539 | None:intergenic |
| TTTGCCTCAAGAAAATCTCA+GGG | 0.641885 | 6.1:-3977937 | None:intergenic |
| ATTGCTCAATACTATAGAGA+CGG | 0.646928 | 6.1:+3977635 | MS.gene54704:CDS |
| TAGTATTGAGCAATAGCTAG+TGG | 0.647572 | 6.1:-3977626 | None:intergenic |
| GCTCAATACTATAGAGACGG+TGG | 0.691286 | 6.1:+3977638 | MS.gene54704:CDS |
| TTGCCTCAAGAAAATCTCAG+GGG | 0.763292 | 6.1:-3977936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCTATAATTAATTTCT+AGG | - | chr6.1:3975710-3975729 | None:intergenic | 10.0% |
| !! | ACAATAAAAGATAAAATAAA+CGG | - | chr6.1:3976268-3976287 | None:intergenic | 10.0% |
| !! | ATTAATTATAGATATTATTG+AGG | + | chr6.1:3975714-3975733 | MS.gene54704:intron | 10.0% |
| !! | GAATTAGTAATAAATAATAA+TGG | - | chr6.1:3974929-3974948 | None:intergenic | 10.0% |
| !!! | TATTTAGTTAATTTTGTATT+TGG | + | chr6.1:3974980-3974999 | MS.gene54704:intron | 10.0% |
| !! | AATAATCAAAAACAAAAAAG+TGG | - | chr6.1:3975380-3975399 | None:intergenic | 15.0% |
| !! | AATATTAAATTTCTTAGCTT+TGG | + | chr6.1:3975564-3975583 | MS.gene54704:intron | 15.0% |
| !! | ATATCACTATTAGATAAAAT+TGG | + | chr6.1:3976500-3976519 | MS.gene54704:CDS | 15.0% |
| !! | ATTGTTGTATAAAATTGTTA+AGG | + | chr6.1:3975473-3975492 | MS.gene54704:intron | 15.0% |
| !! | TGATATTAATATCAATGTAT+TGG | + | chr6.1:3977283-3977302 | MS.gene54704:CDS | 15.0% |
| !! | AAAACAAAAAATCTTCACAT+AGG | + | chr6.1:3977419-3977438 | MS.gene54704:CDS | 20.0% |
| !! | AAACAAAAAATCTTCACATA+GGG | + | chr6.1:3977420-3977439 | MS.gene54704:CDS | 20.0% |
| !! | AAAGTCAAAATTTAGAAATG+AGG | - | chr6.1:3977247-3977266 | None:intergenic | 20.0% |
| !! | ATAAAATACTCGCAAATTAT+TGG | + | chr6.1:3977501-3977520 | MS.gene54704:CDS | 20.0% |
| !! | ATAAAATTGTTAAGGATTCA+TGG | + | chr6.1:3975481-3975500 | MS.gene54704:intron | 20.0% |
| !! | ATAATAGATGTTGAAAATCA+TGG | + | chr6.1:3976992-3977011 | MS.gene54704:intron | 20.0% |
| !! | ATATGCTTATTTCAAATCAA+TGG | - | chr6.1:3976062-3976081 | None:intergenic | 20.0% |
| !! | ATCAAATCCTTAAAAAAACA+TGG | + | chr6.1:3975057-3975076 | MS.gene54704:CDS | 20.0% |
| !! | TAAAATACTCGCAAATTATT+GGG | + | chr6.1:3977502-3977521 | MS.gene54704:CDS | 20.0% |
| !! | TCAATTATTACATACAGTTT+AGG | - | chr6.1:3974898-3974917 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr6.1:3976235-3976254 | None:intergenic | 20.0% |
| !!! | TAACATTCCATGTTTTTTTA+AGG | - | chr6.1:3975067-3975086 | None:intergenic | 20.0% |
| !!! | TCATTTCTAAATTTTGACTT+TGG | + | chr6.1:3977246-3977265 | MS.gene54704:intron | 20.0% |
| ! | AAAACAAGTAGAATCTGAAT+CGG | - | chr6.1:3976714-3976733 | None:intergenic | 25.0% |
| ! | AAGGATTACAAAGCTATTAA+GGG | + | chr6.1:3977980-3977999 | MS.gene54704:CDS | 25.0% |
| ! | ACACAAAAAGCAATAAGTAA+AGG | + | chr6.1:3975596-3975615 | MS.gene54704:intron | 25.0% |
| ! | AGAATTTCCAAATTAGAATC+AGG | - | chr6.1:3976743-3976762 | None:intergenic | 25.0% |
| ! | ATATGCCTTAAAATAGTGTT+TGG | + | chr6.1:3976084-3976103 | MS.gene54704:intron | 25.0% |
| ! | ATTACATTAAGCAAAGTTCA+TGG | + | chr6.1:3976764-3976783 | MS.gene54704:CDS | 25.0% |
| ! | ATTATCACAAAAGAGTGAAA+CGG | - | chr6.1:3975321-3975340 | None:intergenic | 25.0% |
| ! | ATTTCATTCAATTTCTTGGA+TGG | - | chr6.1:3977362-3977381 | None:intergenic | 25.0% |
| ! | CACAAAAAGCAATAAGTAAA+GGG | + | chr6.1:3975597-3975616 | MS.gene54704:intron | 25.0% |
| ! | CATTATATGGCCATAATAAA+AGG | + | chr6.1:3975669-3975688 | MS.gene54704:intron | 25.0% |
| ! | CTTCATTTCATTCAATTTCT+TGG | - | chr6.1:3977366-3977385 | None:intergenic | 25.0% |
| ! | GATAAAATAAACGGAGATTA+TGG | - | chr6.1:3976259-3976278 | None:intergenic | 25.0% |
| ! | TATGCCTTAAAATAGTGTTT+GGG | + | chr6.1:3976085-3976104 | MS.gene54704:intron | 25.0% |
| ! | TATTTCAAATCAATGGTTTC+TGG | - | chr6.1:3976055-3976074 | None:intergenic | 25.0% |
| ! | TGTAATCATACTACTACTAT+TGG | + | chr6.1:3977201-3977220 | MS.gene54704:intron | 25.0% |
| ! | TTGAAAATCATGGAATCATA+GGG | + | chr6.1:3977002-3977021 | MS.gene54704:intron | 25.0% |
| ! | TTGGGATAAAAATATGGAAA+GGG | + | chr6.1:3976103-3976122 | MS.gene54704:intron | 25.0% |
| ! | TTTGTCTGATCTTAAAACAA+TGG | + | chr6.1:3975896-3975915 | MS.gene54704:intron | 25.0% |
| !! | AATCAAATCACTTTGAAGAT+TGG | - | chr6.1:3975207-3975226 | None:intergenic | 25.0% |
| !! | ACAACACTTTCCTTTTATTA+TGG | - | chr6.1:3975682-3975701 | None:intergenic | 25.0% |
| !! | ACAATCTTAATGCAGATTTT+AGG | + | chr6.1:3976407-3976426 | MS.gene54704:intron | 25.0% |
| !! | TAGTGTTTGGGATAAAAATA+TGG | + | chr6.1:3976097-3976116 | MS.gene54704:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+CGG | + | chr6.1:3976301-3976320 | MS.gene54704:intron | 25.0% |
| !! | TTATCCCAAACACTATTTTA+AGG | - | chr6.1:3976092-3976111 | None:intergenic | 25.0% |
| !! | TTTGGGATAAAAATATGGAA+AGG | + | chr6.1:3976102-3976121 | MS.gene54704:intron | 25.0% |
| !!! | TAATAAAAGGAAAGTGTTGT+TGG | + | chr6.1:3975682-3975701 | MS.gene54704:intron | 25.0% |
| AAAGATTAAGCTGTATGGTT+TGG | + | chr6.1:3978048-3978067 | MS.gene54704:CDS | 30.0% | |
| AAAGTTCATGGTCAAAATCA+AGG | + | chr6.1:3976776-3976795 | MS.gene54704:CDS | 30.0% | |
| AACTAGAAGACTTCATTCAA+AGG | + | chr6.1:3977321-3977340 | MS.gene54704:CDS | 30.0% | |
| AAGATTAAGCTGTATGGTTT+GGG | + | chr6.1:3978049-3978068 | MS.gene54704:CDS | 30.0% | |
| AAGGCTATAATAGTCAAATC+AGG | - | chr6.1:3975164-3975183 | None:intergenic | 30.0% | |
| ACTTGTGTAAGCTTATTTAC+CGG | + | chr6.1:3976149-3976168 | MS.gene54704:intron | 30.0% | |
| AGAAGAAGTGATGAAGAAAT+TGG | + | chr6.1:3977865-3977884 | MS.gene54704:CDS | 30.0% | |
| ATCCAAACACTTCAAAACTT+TGG | + | chr6.1:3977685-3977704 | MS.gene54704:CDS | 30.0% | |
| ATGAGAAATGAGTAGATGTA+GGG | + | chr6.1:3977124-3977143 | MS.gene54704:intron | 30.0% | |
| ATTGCTCAATACTATAGAGA+CGG | + | chr6.1:3977635-3977654 | MS.gene54704:CDS | 30.0% | |
| CAAAAGAGAAATGTTCCAAA+AGG | - | chr6.1:3976689-3976708 | None:intergenic | 30.0% | |
| CAACTTATGGACATATCATA+AGG | - | chr6.1:3976222-3976241 | None:intergenic | 30.0% | |
| CAAGACATAGATACATATGA+TGG | + | chr6.1:3975101-3975120 | MS.gene54704:CDS | 30.0% | |
| CACATTAGTTAGTATAACTG+AGG | - | chr6.1:3977163-3977182 | None:intergenic | 30.0% | |
| CCTATGCAAAACAAATGAAA+TGG | - | chr6.1:3975973-3975992 | None:intergenic | 30.0% | |
| CTCAGTTATACTAACTAATG+TGG | + | chr6.1:3977161-3977180 | MS.gene54704:intron | 30.0% | |
| GAAGAAATTGGTTGAATTTG+AGG | + | chr6.1:3977877-3977896 | MS.gene54704:CDS | 30.0% | |
| GAAGGATTACAAAGCTATTA+AGG | + | chr6.1:3977979-3977998 | MS.gene54704:CDS | 30.0% | |
| GAATTTGAGGACTATGTTTA+TGG | + | chr6.1:3977890-3977909 | MS.gene54704:CDS | 30.0% | |
| GTTGAAAATCATGGAATCAT+AGG | + | chr6.1:3977001-3977020 | MS.gene54704:intron | 30.0% | |
| TGAGAATCCTGATTCTAATT+TGG | + | chr6.1:3976733-3976752 | MS.gene54704:CDS | 30.0% | |
| TGCATTAAGATTGTTGCATA+AGG | - | chr6.1:3976401-3976420 | None:intergenic | 30.0% | |
| TGGAACTACATATAGAAGAA+TGG | + | chr6.1:3977598-3977617 | MS.gene54704:CDS | 30.0% | |
| TTGAAGATTGGAAGAATCTA+TGG | - | chr6.1:3975195-3975214 | None:intergenic | 30.0% | |
| ! | ATAGATACATATGATGGTGT+TGG | + | chr6.1:3975107-3975126 | MS.gene54704:CDS | 30.0% |
| ! | GTGTTATTAAGAGAGAAAGA+AGG | - | chr6.1:3975296-3975315 | None:intergenic | 30.0% |
| ! | TGACTATAGATTCTTGCTTT+TGG | + | chr6.1:3977786-3977805 | MS.gene54704:CDS | 30.0% |
| !! | CTATGTTTATGGTTTGCTTA+AGG | + | chr6.1:3977901-3977920 | MS.gene54704:CDS | 30.0% |
| !! | GACTATAGATTCTTGCTTTT+GGG | + | chr6.1:3977787-3977806 | MS.gene54704:CDS | 30.0% |
| !!! | CCATTTCATTTGTTTTGCAT+AGG | + | chr6.1:3975970-3975989 | MS.gene54704:intron | 30.0% |
| ACAATATATGCCTAGAAGCT+AGG | - | chr6.1:3976363-3976382 | None:intergenic | 35.0% | |
| ACTGTTTGAGAGAGCTTATA+TGG | + | chr6.1:3976191-3976210 | MS.gene54704:intron | 35.0% | |
| AGAATCTATGGTAGCTTCAA+AGG | - | chr6.1:3975183-3975202 | None:intergenic | 35.0% | |
| ATCCCTTTACTCTTTGCTTT+CGG | - | chr6.1:3975850-3975869 | None:intergenic | 35.0% | |
| ATCCTGACTACATAGAATCA+GGG | - | chr6.1:3975779-3975798 | None:intergenic | 35.0% | |
| CAAACACTTCAAAACTTTGG+AGG | + | chr6.1:3977688-3977707 | MS.gene54704:CDS | 35.0% | |
| CAGTACAAGTAAGAAGAAAG+TGG | + | chr6.1:3977754-3977773 | MS.gene54704:CDS | 35.0% | |
| CATTCATGCAGTTAGTGTAT+TGG | - | chr6.1:3975925-3975944 | None:intergenic | 35.0% | |
| CCAATTAGAACTACGTGATA+TGG | - | chr6.1:3976597-3976616 | None:intergenic | 35.0% | |
| CGCAAATTATTGGGAAAAGA+TGG | + | chr6.1:3977511-3977530 | MS.gene54704:CDS | 35.0% | |
| CGGTCATCTTGTAACAATAA+TGG | + | chr6.1:3976321-3976340 | MS.gene54704:intron | 35.0% | |
| GAATGAAATGAAGCGACATA+TGG | + | chr6.1:3977373-3977392 | MS.gene54704:CDS | 35.0% | |
| GATGAGAAATGAGTAGATGT+AGG | + | chr6.1:3977123-3977142 | MS.gene54704:intron | 35.0% | |
| GCTAATTTCATGAATGATGC+TGG | + | chr6.1:3978025-3978044 | MS.gene54704:CDS | 35.0% | |
| GGCTATCTTAAACACTTTAG+AGG | + | chr6.1:3975637-3975656 | MS.gene54704:intron | 35.0% | |
| GTAAAGGGAGTTAGATTCTA+TGG | + | chr6.1:3975612-3975631 | MS.gene54704:intron | 35.0% | |
| GTAACAATCAATGGAGTTAC+TGG | - | chr6.1:3976440-3976459 | None:intergenic | 35.0% | |
| TATCCTGACTACATAGAATC+AGG | - | chr6.1:3975780-3975799 | None:intergenic | 35.0% | |
| TATGATTGCAGATTTAGCAG+TGG | + | chr6.1:3975005-3975024 | MS.gene54704:intron | 35.0% | |
| TATGCATATTCCTAGCTTCT+AGG | + | chr6.1:3976350-3976369 | MS.gene54704:intron | 35.0% | |
| TATGGCCATATAATGAGAAC+AGG | - | chr6.1:3975664-3975683 | None:intergenic | 35.0% | |
| TATTCACATACCAGCAATTG+TGG | - | chr6.1:3976953-3976972 | None:intergenic | 35.0% | |
| TTTGCCTCAAGAAAATCTCA+GGG | - | chr6.1:3977940-3977959 | None:intergenic | 35.0% | |
| ! | AAAGTAGCTATATGAGTTGG+TGG | + | chr6.1:3977957-3977976 | MS.gene54704:CDS | 35.0% |
| ! | ACTTCAAAACTTTGGAGGAA+TGG | + | chr6.1:3977693-3977712 | MS.gene54704:CDS | 35.0% |
| ! | CAGACGTAAAGCAATTTTCA+AGG | + | chr6.1:3976838-3976857 | MS.gene54704:CDS | 35.0% |
| ! | GCTTGATGAGTTGAAATCTA+AGG | + | chr6.1:3975349-3975368 | MS.gene54704:CDS | 35.0% |
| ! | GTAACTCCATTGATTGTTAC+TGG | + | chr6.1:3976440-3976459 | MS.gene54704:CDS | 35.0% |
| ! | GTCACAAATTACATGCCTTT+TGG | + | chr6.1:3976671-3976690 | MS.gene54704:CDS | 35.0% |
| ! | TAATTTGTGACGAATAGCCT+AGG | - | chr6.1:3976662-3976681 | None:intergenic | 35.0% |
| ! | TAGTATTGAGCAATAGCTAG+TGG | - | chr6.1:3977629-3977648 | None:intergenic | 35.0% |
| !! | CCATATCACGTAGTTCTAAT+TGG | + | chr6.1:3976594-3976613 | MS.gene54704:CDS | 35.0% |
| !! | GAAATGGATTTGTTGCAGTT+GGG | - | chr6.1:3975957-3975976 | None:intergenic | 35.0% |
| !! | TGAAATGGATTTGTTGCAGT+TGG | - | chr6.1:3975958-3975977 | None:intergenic | 35.0% |
| !!! | CTCCAAAGTTTTGAAGTGTT+TGG | - | chr6.1:3977690-3977709 | None:intergenic | 35.0% |
| AAGGGAGTTAGATTCTATGG+AGG | + | chr6.1:3975615-3975634 | MS.gene54704:intron | 40.0% | |
| AGGGAGTTAGATTCTATGGA+GGG | + | chr6.1:3975616-3975635 | MS.gene54704:intron | 40.0% | |
| ATTGTTACTGGAAGAGGTCT+TGG | + | chr6.1:3976452-3976471 | MS.gene54704:CDS | 40.0% | |
| CAACTGCAAGTGAATCTGAA+TGG | - | chr6.1:3976892-3976911 | None:intergenic | 40.0% | |
| CATTCAGATTCACTTGCAGT+TGG | + | chr6.1:3976890-3976909 | MS.gene54704:CDS | 40.0% | |
| CCTCTTCCAGTAACAATCAA+TGG | - | chr6.1:3976449-3976468 | None:intergenic | 40.0% | |
| CTTTGCCTCAAGAAAATCTC+AGG | - | chr6.1:3977941-3977960 | None:intergenic | 40.0% | |
| GAACCAAATGTGATGCATAG+TGG | - | chr6.1:3976542-3976561 | None:intergenic | 40.0% | |
| GAGGTCCTGTTCTCATTATA+TGG | + | chr6.1:3975656-3975675 | MS.gene54704:intron | 40.0% | |
| GCTGGAAAGATTAAGCTGTA+TGG | + | chr6.1:3978043-3978062 | MS.gene54704:CDS | 40.0% | |
| GGATTTGATTCAGCTGAGTA+TGG | + | chr6.1:3976797-3976816 | MS.gene54704:CDS | 40.0% | |
| GGCAAAGTAGCTATATGAGT+TGG | + | chr6.1:3977954-3977973 | MS.gene54704:CDS | 40.0% | |
| GTCCGAAAGCAAAGAGTAAA+GGG | + | chr6.1:3975845-3975864 | MS.gene54704:intron | 40.0% | |
| GTCGGTGATCATTTGATCTT+TGG | + | chr6.1:3975823-3975842 | MS.gene54704:intron | 40.0% | |
| TCTCTCAAACAGTCTCACAA+AGG | - | chr6.1:3976184-3976203 | None:intergenic | 40.0% | |
| TGTTACAAGATGACCGTGTT+TGG | - | chr6.1:3976317-3976336 | None:intergenic | 40.0% | |
| TTATTGAGGTCCTGTGTTGT+TGG | + | chr6.1:3975728-3975747 | MS.gene54704:intron | 40.0% | |
| TTCTTGCACGCCATCATAAT+CGG | + | chr6.1:3975753-3975772 | MS.gene54704:intron | 40.0% | |
| TTGCCTCAAGAAAATCTCAG+GGG | - | chr6.1:3977939-3977958 | None:intergenic | 40.0% | |
| TTTCAAGGATTCTTCTCTGC+TGG | + | chr6.1:3976853-3976872 | MS.gene54704:CDS | 40.0% | |
| ! | AACTTTGGAGGAATGGTTAG+AGG | + | chr6.1:3977700-3977719 | MS.gene54704:CDS | 40.0% |
| ! | ACATTTGGTTCACCTCTTGT+TGG | + | chr6.1:3976551-3976570 | MS.gene54704:CDS | 40.0% |
| ! | ATGATGGTGTTGGATTGTGT+TGG | + | chr6.1:3975117-3975136 | MS.gene54704:CDS | 40.0% |
| ! | CCATTGATTGTTACTGGAAG+AGG | + | chr6.1:3976446-3976465 | MS.gene54704:CDS | 40.0% |
| !! | TAGCTATATGAGTTGGTGGA+AGG | + | chr6.1:3977961-3977980 | MS.gene54704:CDS | 40.0% |
| AACTTCCTGTCACCAACAAG+AGG | - | chr6.1:3976566-3976585 | None:intergenic | 45.0% | |
| AAGGTTGACACCACAATTGC+TGG | + | chr6.1:3976940-3976959 | MS.gene54704:CDS | 45.0% | |
| AGAATCAGGGCCGATTATGA+TGG | - | chr6.1:3975766-3975785 | None:intergenic | 45.0% | |
| ATCTGAATGGTTCCTGTCTC+CGG | - | chr6.1:3976879-3976898 | None:intergenic | 45.0% | |
| CGTCCACTATGCATCACATT+TGG | + | chr6.1:3976536-3976555 | MS.gene54704:CDS | 45.0% | |
| CTTGCAATGATCCACTTCCT+AGG | + | chr6.1:3976642-3976661 | MS.gene54704:CDS | 45.0% | |
| GAACTGAAGCCTCAAAGAGA+AGG | + | chr6.1:3977545-3977564 | MS.gene54704:CDS | 45.0% | |
| GACATATGGCGCAACTTGAA+TGG | + | chr6.1:3977387-3977406 | MS.gene54704:CDS | 45.0% | |
| GCTCAATACTATAGAGACGG+TGG | + | chr6.1:3977638-3977657 | MS.gene54704:CDS | 45.0% | |
| GGTCCGAAAGCAAAGAGTAA+AGG | + | chr6.1:3975844-3975863 | MS.gene54704:intron | 45.0% | |
| TGCAAGAAGACCAACAACAC+AGG | - | chr6.1:3975741-3975760 | None:intergenic | 45.0% | |
| TGCAGTTGCAACAGACACTA+AGG | + | chr6.1:3976921-3976940 | MS.gene54704:CDS | 45.0% | |
| ! | TGTCCCCTGAGATTTTCTTG+AGG | + | chr6.1:3977933-3977952 | MS.gene54704:CDS | 45.0% |
| !! | TTTCGTAATCGCTGGCTCTT+CGG | + | chr6.1:3977575-3977594 | MS.gene54704:CDS | 45.0% |
| AAGGATTCTTCTCTGCTGGC+CGG | + | chr6.1:3976857-3976876 | MS.gene54704:CDS | 50.0% | |
| AATGCAGCGCCTTCTCTTTG+AGG | - | chr6.1:3977557-3977576 | None:intergenic | 50.0% | |
| AGTTCACGCACTCAGTACGT+CGG | + | chr6.1:3975805-3975824 | MS.gene54704:intron | 50.0% | |
| CTCACAAAGGCTTGTGTCAC+CGG | - | chr6.1:3976171-3976190 | None:intergenic | 50.0% | |
| GGCCCTGATTCTATGTAGTC+AGG | + | chr6.1:3975774-3975793 | MS.gene54704:intron | 50.0% | |
| GTACTGAGTGCGTGAACTCA+GGG | - | chr6.1:3975803-3975822 | None:intergenic | 50.0% | |
| GTGACGAATAGCCTAGGAAG+TGG | - | chr6.1:3976656-3976675 | None:intergenic | 50.0% | |
| GTTACTGGAAGAGGTCTTGG+AGG | + | chr6.1:3976455-3976474 | MS.gene54704:CDS | 50.0% | |
| ! | CTTTTGGGCACGTGTTGAAG+AGG | + | chr6.1:3977802-3977821 | MS.gene54704:CDS | 50.0% |
| !! | GTTCACCTCTTGTTGGTGAC+AGG | + | chr6.1:3976558-3976577 | MS.gene54704:CDS | 50.0% |
| CGTACTGAGTGCGTGAACTC+AGG | - | chr6.1:3975804-3975823 | None:intergenic | 55.0% | |
| GCGCTGCATTTCGTAATCGC+TGG | + | chr6.1:3977567-3977586 | MS.gene54704:CDS | 55.0% | |
| !! | CGTAATCGCTGGCTCTTCGG+TGG | + | chr6.1:3977578-3977597 | MS.gene54704:CDS | 60.0% |
| CTTCTCTGCTGGCCGGAGAC+AGG | + | chr6.1:3976864-3976883 | MS.gene54704:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3974886 | 3978090 | 3974886 | ID=MS.gene54704 |
| chr6.1 | mRNA | 3974886 | 3978090 | 3974886 | ID=MS.gene54704.t1;Parent=MS.gene54704 |
| chr6.1 | exon | 3974886 | 3974902 | 3974886 | ID=MS.gene54704.t1.exon1;Parent=MS.gene54704.t1 |
| chr6.1 | CDS | 3974886 | 3974902 | 3974886 | ID=cds.MS.gene54704.t1;Parent=MS.gene54704.t1 |
| chr6.1 | exon | 3975016 | 3975370 | 3975016 | ID=MS.gene54704.t1.exon2;Parent=MS.gene54704.t1 |
| chr6.1 | CDS | 3975016 | 3975370 | 3975016 | ID=cds.MS.gene54704.t1;Parent=MS.gene54704.t1 |
| chr6.1 | exon | 3976422 | 3976961 | 3976422 | ID=MS.gene54704.t1.exon3;Parent=MS.gene54704.t1 |
| chr6.1 | CDS | 3976422 | 3976961 | 3976422 | ID=cds.MS.gene54704.t1;Parent=MS.gene54704.t1 |
| chr6.1 | exon | 3977275 | 3978090 | 3977275 | ID=MS.gene54704.t1.exon4;Parent=MS.gene54704.t1 |
| chr6.1 | CDS | 3977275 | 3978090 | 3977275 | ID=cds.MS.gene54704.t1;Parent=MS.gene54704.t1 |
| Gene Sequence |
| Protein sequence |
