Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54747.t1 | XP_013468351.1 | 97.7 | 481 | 11 | 0 | 1 | 481 | 1 | 481 | 5.10E-224 | 786.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54747.t1 | O80925 | 69.0 | 368 | 102 | 6 | 1 | 359 | 1 | 365 | 6.7e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54747.t1 | A0A072VLX3 | 97.7 | 481 | 11 | 0 | 1 | 481 | 1 | 481 | 3.7e-224 | 786.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene54747 | 0.839398 | 1.62E-57 | -1.69E-46 |
| MS.gene049680 | MS.gene54747 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene54747 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene54747 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene54747 | 0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene54747 | 0.801989 | 6.94E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene54747 | 0.852635 | 4.06E-61 | -1.69E-46 |
| MS.gene052479 | MS.gene54747 | 0.813357 | 2.67E-51 | -1.69E-46 |
| MS.gene052793 | MS.gene54747 | 0.826404 | 2.76E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene54747 | 0.828231 | 1.01E-54 | -1.69E-46 |
| MS.gene054709 | MS.gene54747 | 0.810454 | 1.14E-50 | -1.69E-46 |
| MS.gene055339 | MS.gene54747 | 0.857484 | 1.58E-62 | -1.69E-46 |
| MS.gene055765 | MS.gene54747 | 0.815997 | 6.94E-52 | -1.69E-46 |
| MS.gene056578 | MS.gene54747 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene056693 | MS.gene54747 | 0.809691 | 1.67E-50 | -1.69E-46 |
| MS.gene056881 | MS.gene54747 | 0.830952 | 2.20E-55 | -1.69E-46 |
| MS.gene057694 | MS.gene54747 | 0.805458 | 1.32E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene54747 | 0.80619 | 9.28E-50 | -1.69E-46 |
| MS.gene059802 | MS.gene54747 | 0.864513 | 1.15E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene54747 | 0.828219 | 1.02E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31156 | MS.gene54747 | PPI |
| MS.gene001874 | MS.gene54747 | PPI |
| MS.gene54747 | MS.gene036453 | PPI |
| MS.gene67376 | MS.gene54747 | PPI |
| MS.gene45489 | MS.gene54747 | PPI |
| MS.gene79962 | MS.gene54747 | PPI |
| MS.gene30955 | MS.gene54747 | PPI |
| MS.gene021114 | MS.gene54747 | PPI |
| MS.gene044849 | MS.gene54747 | PPI |
| MS.gene004045 | MS.gene54747 | PPI |
| MS.gene54747 | MS.gene41176 | PPI |
| MS.gene004101 | MS.gene54747 | PPI |
| MS.gene54747 | MS.gene052122 | PPI |
| MS.gene54747 | MS.gene021049 | PPI |
| MS.gene54747 | MS.gene071169 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54747.t1 | MTR_1g069000 | 98.545 | 481 | 7 | 0 | 1 | 481 | 1 | 481 | 0.0 | 977 |
| MS.gene54747.t1 | MTR_7g099830 | 64.989 | 457 | 102 | 10 | 1 | 444 | 1 | 412 | 0.0 | 557 |
| MS.gene54747.t1 | MTR_8g067090 | 48.039 | 102 | 53 | 0 | 7 | 108 | 13 | 114 | 1.33e-27 | 114 |
| MS.gene54747.t1 | MTR_8g471120 | 48.039 | 102 | 53 | 0 | 7 | 108 | 13 | 114 | 1.33e-27 | 114 |
| MS.gene54747.t1 | MTR_8g067080 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 2.85e-27 | 113 |
| MS.gene54747.t1 | MTR_8g067080 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 3.48e-27 | 113 |
| MS.gene54747.t1 | MTR_8g471110 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 3.48e-27 | 113 |
| MS.gene54747.t1 | MTR_2g030230 | 48.864 | 88 | 43 | 2 | 5 | 91 | 19 | 105 | 4.44e-21 | 94.4 |
| MS.gene54747.t1 | MTR_8g088320 | 46.739 | 92 | 47 | 2 | 1 | 91 | 6 | 96 | 6.92e-21 | 93.6 |
| MS.gene54747.t1 | MTR_2g080950 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 2.78e-20 | 94.0 |
| MS.gene54747.t1 | MTR_8g464390 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 9.69e-20 | 92.0 |
| MS.gene54747.t1 | MTR_6g080710 | 51.351 | 74 | 36 | 0 | 4 | 77 | 16 | 89 | 5.96e-19 | 87.0 |
| MS.gene54747.t1 | MTR_8g038400 | 48.718 | 78 | 39 | 1 | 5 | 81 | 18 | 95 | 1.60e-18 | 87.4 |
| MS.gene54747.t1 | MTR_3g017500 | 48.052 | 77 | 39 | 1 | 6 | 81 | 23 | 99 | 1.82e-17 | 84.3 |
| MS.gene54747.t1 | MTR_3g017500 | 48.052 | 77 | 39 | 1 | 6 | 81 | 53 | 129 | 3.09e-17 | 84.0 |
| MS.gene54747.t1 | MTR_4g074170 | 46.053 | 76 | 39 | 1 | 10 | 83 | 485 | 560 | 4.16e-15 | 78.6 |
| MS.gene54747.t1 | MTR_8g100100 | 48.571 | 70 | 34 | 1 | 10 | 77 | 500 | 569 | 2.11e-14 | 76.3 |
| MS.gene54747.t1 | MTR_8g100100 | 48.571 | 70 | 34 | 1 | 10 | 77 | 506 | 575 | 2.16e-14 | 76.3 |
| MS.gene54747.t1 | MTR_7g020860 | 45.333 | 75 | 39 | 1 | 10 | 82 | 508 | 582 | 1.05e-13 | 73.9 |
| MS.gene54747.t1 | MTR_7g020860 | 47.143 | 70 | 35 | 1 | 10 | 77 | 508 | 577 | 1.24e-13 | 73.9 |
| MS.gene54747.t1 | MTR_3g098680 | 44.286 | 70 | 37 | 1 | 10 | 77 | 503 | 572 | 5.40e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54747.t1 | AT2G37550 | 61.789 | 492 | 141 | 8 | 1 | 481 | 1 | 456 | 0.0 | 554 |
| MS.gene54747.t1 | AT2G37550 | 61.789 | 492 | 141 | 8 | 1 | 481 | 1 | 456 | 0.0 | 554 |
| MS.gene54747.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene54747.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene54747.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene54747.t1 | AT4G17890 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 1.37e-29 | 119 |
| MS.gene54747.t1 | AT4G17890 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 2.18e-29 | 119 |
| MS.gene54747.t1 | AT5G46750 | 48.571 | 105 | 54 | 0 | 7 | 111 | 13 | 117 | 6.64e-29 | 118 |
| MS.gene54747.t1 | AT2G35210 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 1.05e-27 | 114 |
| MS.gene54747.t1 | AT2G35210 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 2.83e-27 | 113 |
| MS.gene54747.t1 | AT4G05330 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 4.08e-22 | 97.8 |
| MS.gene54747.t1 | AT4G05330 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 4.08e-22 | 97.8 |
| MS.gene54747.t1 | AT5G54310 | 41.803 | 122 | 68 | 2 | 7 | 128 | 19 | 137 | 1.24e-21 | 97.8 |
| MS.gene54747.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 2.51e-21 | 91.7 |
| MS.gene54747.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 3.19e-21 | 92.8 |
| MS.gene54747.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene54747.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene54747.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene54747.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene54747.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 8.84e-21 | 92.0 |
| MS.gene54747.t1 | AT3G07940 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 9.03e-20 | 89.7 |
| MS.gene54747.t1 | AT3G07940 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 3.23e-19 | 89.7 |
| MS.gene54747.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 359 | 415 | 2.53e-15 | 79.0 |
| MS.gene54747.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 470 | 526 | 2.55e-15 | 79.3 |
| MS.gene54747.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 299 | 355 | 2.91e-15 | 79.0 |
| MS.gene54747.t1 | AT3G17660 | 50.000 | 58 | 29 | 0 | 4 | 61 | 16 | 73 | 3.63e-14 | 72.0 |
| MS.gene54747.t1 | AT5G13300 | 48.571 | 70 | 34 | 1 | 10 | 77 | 507 | 576 | 3.83e-14 | 75.5 |
| MS.gene54747.t1 | AT5G61980 | 45.714 | 70 | 36 | 1 | 15 | 82 | 509 | 578 | 1.09e-13 | 74.3 |
| MS.gene54747.t1 | AT1G10870 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.17e-13 | 72.8 |
| MS.gene54747.t1 | AT1G10870 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.38e-13 | 72.4 |
Find 169 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATAGGGAAGGAGGTTC+GGG | 0.309762 | 1.4:-55119667 | MS.gene54747:CDS |
| AAGAAAGCTGCTGGACATAA+TGG | 0.311171 | 1.4:-55117668 | MS.gene54747:CDS |
| CACAAAAGAGATTACTTCTA+AGG | 0.329121 | 1.4:-55119099 | MS.gene54747:intron |
| CTCAAACTCTTGGGACGATT+GGG | 0.331416 | 1.4:-55117924 | MS.gene54747:CDS |
| TGGCGGCATCACGGCGGCTC+CGG | 0.342322 | 1.4:-55120119 | MS.gene54747:CDS |
| TTGGGATAGGGAAGGAGGTT+CGG | 0.345457 | 1.4:-55119668 | MS.gene54747:CDS |
| ATCCCAGCTCTTGGGATGAT+TGG | 0.345579 | 1.4:-55117820 | MS.gene54747:CDS |
| ATGATGCTGGTTGGGCTGGC+TGG | 0.346920 | 1.4:-55117742 | MS.gene54747:CDS |
| TATTTATTCGCGGTCGCAAT+TGG | 0.352308 | 1.4:-55119560 | MS.gene54747:CDS |
| GCAGATCTTGTTGCCGGGTT+GGG | 0.371767 | 1.4:+55120086 | None:intergenic |
| CAAATTCGACTACTAATAAC+TGG | 0.372531 | 1.4:-55118063 | MS.gene54747:CDS |
| CCGGTTGTGAAGGAGAATTT+AGG | 0.374910 | 1.4:-55119751 | MS.gene54747:CDS |
| GGAGTTGATCCTTTATTAGT+AGG | 0.375169 | 1.4:+55117875 | None:intergenic |
| ATGATTCCGGCTGGGATGAT+TGG | 0.384077 | 1.4:-55119687 | MS.gene54747:CDS |
| TATTCATCTGGTGGGCAGTC+TGG | 0.394756 | 1.4:-55117851 | MS.gene54747:CDS |
| AGTTTATCGTGATCGGATTC+AGG | 0.397292 | 1.4:-55119806 | MS.gene54747:CDS |
| CTTCCTTCCTAGAATCTTTG+TGG | 0.398078 | 1.4:+55117795 | None:intergenic |
| AAGGGAGAACCTACTAATAA+AGG | 0.401153 | 1.4:-55117884 | MS.gene54747:CDS |
| GACTGCCCACCAGATGAATA+AGG | 0.405430 | 1.4:+55117854 | None:intergenic |
| TGATAGAAATGGCTACTATC+AGG | 0.410799 | 1.4:-55118026 | MS.gene54747:CDS |
| CGCAGATCTTGTTGCCGGGT+TGG | 0.414757 | 1.4:+55120085 | None:intergenic |
| TGTTGCCGGGTTGGGATTGA+AGG | 0.414970 | 1.4:+55120094 | None:intergenic |
| GCTCAAACTCTTGGGACGAT+TGG | 0.416102 | 1.4:-55117925 | MS.gene54747:CDS |
| ATTGGGACCACAAAGATTCT+AGG | 0.416709 | 1.4:-55117802 | MS.gene54747:CDS |
| CCACAATAATGATGCTGGTT+GGG | 0.420450 | 1.4:-55117750 | MS.gene54747:CDS |
| TCCCAGCTCTTGGGATGATT+GGG | 0.422693 | 1.4:-55117819 | MS.gene54747:CDS |
| GGCGGCATCACGGCGGCTCC+GGG | 0.423745 | 1.4:-55120118 | MS.gene54747:CDS |
| CGCCGATGGGGCAGAGTCGC+CGG | 0.424686 | 1.4:-55119714 | MS.gene54747:CDS |
| CGAAATGAGAATGATAGAAA+TGG | 0.430727 | 1.4:-55118037 | MS.gene54747:CDS |
| AAACTCAAAGCTCAAACTCT+TGG | 0.431090 | 1.4:-55117934 | MS.gene54747:CDS |
| AATAATGATGCTGGTTGGGC+TGG | 0.431540 | 1.4:-55117746 | MS.gene54747:CDS |
| TCGGTCGTGGCGTGATCCTC+CGG | 0.431712 | 1.4:-55119770 | MS.gene54747:CDS |
| TTCCTTCGGAATAGAATACT+TGG | 0.434318 | 1.4:+55119867 | None:intergenic |
| TGATTCCGGCTGGGATGATT+GGG | 0.435890 | 1.4:-55119686 | MS.gene54747:CDS |
| TACTATCAGGATTTCAATCA+AGG | 0.437121 | 1.4:-55118013 | MS.gene54747:CDS |
| CGCAAGGTGGGAAGTATGTT+GGG | 0.437210 | 1.4:-55119456 | MS.gene54747:CDS |
| TACTCACAATCCCAGCTCTT+GGG | 0.438114 | 1.4:-55117828 | MS.gene54747:CDS |
| GGATCAACTCCTTATTCATC+TGG | 0.439382 | 1.4:-55117863 | MS.gene54747:CDS |
| GGAAGAGAACAATCTTCATC+AGG | 0.440220 | 1.4:-55117965 | MS.gene54747:CDS |
| AAATCAGATGACGCTTGGAC+AGG | 0.441545 | 1.4:-55117644 | MS.gene54747:CDS |
| GGGGATTGGTAAGTTGTCAT+TGG | 0.442974 | 1.4:-55119156 | MS.gene54747:CDS |
| AGAAAGCTGCTGGACATAAT+GGG | 0.444118 | 1.4:-55117667 | MS.gene54747:CDS |
| CCTAAATTCTCCTTCACAAC+CGG | 0.446662 | 1.4:+55119751 | None:intergenic |
| TCCGGAAAACACCGTGGTCT+CGG | 0.447372 | 1.4:-55119994 | MS.gene54747:CDS |
| AACTCAAAGCTCAAACTCTT+GGG | 0.448408 | 1.4:-55117933 | MS.gene54747:CDS |
| TGGGGAGCTGATGCTTTAGC+TGG | 0.452701 | 1.4:+55117770 | None:intergenic |
| CATGGCTTTGGCTTCACAGA+AGG | 0.454790 | 1.4:-55118110 | MS.gene54747:CDS |
| TGCGACGGTGGAAGTCCTTC+CGG | 0.458253 | 1.4:+55119475 | None:intergenic |
| AAGGAGAATTTAGGTTCAAA+GGG | 0.460070 | 1.4:-55119742 | MS.gene54747:CDS |
| ATCGACGCAGATCTTGTTGC+CGG | 0.461374 | 1.4:+55120080 | None:intergenic |
| AAAGGAGGTAATTCTTCTAC+TGG | 0.461732 | 1.4:-55117986 | MS.gene54747:CDS |
| CGGATTCAGGCTTTGTCGGA+AGG | 0.463866 | 1.4:-55119793 | MS.gene54747:CDS |
| GTCCCAATCATCCCAAGAGC+TGG | 0.464845 | 1.4:+55117817 | None:intergenic |
| TGATCGGATTCAGGCTTTGT+CGG | 0.466457 | 1.4:-55119797 | MS.gene54747:CDS |
| GTAACAATATCCGTTTCCTT+CGG | 0.466590 | 1.4:+55119853 | None:intergenic |
| TTCAAAGGGAAGGCCGCCGA+TGG | 0.468886 | 1.4:-55119728 | MS.gene54747:CDS |
| AATCAGATGACGCTTGGACA+GGG | 0.470359 | 1.4:-55117643 | MS.gene54747:CDS |
| TGATGCTGGTTGGGCTGGCT+GGG | 0.473809 | 1.4:-55117741 | MS.gene54747:CDS |
| GTACTCACAATCCCAGCTCT+TGG | 0.474135 | 1.4:-55117829 | MS.gene54747:CDS |
| CTGCTTCAGTTTATCGTGAT+CGG | 0.474442 | 1.4:-55119813 | MS.gene54747:CDS |
| GAAGGAGAATTTAGGTTCAA+AGG | 0.482185 | 1.4:-55119743 | MS.gene54747:CDS |
| AGCTTCTGCGGCGGGTAAAG+AGG | 0.482654 | 1.4:-55119536 | MS.gene54747:CDS |
| CAGAGATTGGTCAAAGGACA+TGG | 0.483037 | 1.4:-55118150 | MS.gene54747:CDS |
| CCCAACCAGCATCATTATTG+TGG | 0.485486 | 1.4:+55117750 | None:intergenic |
| TTTGAACGGCGGTGGTGCAC+CGG | 0.486910 | 1.4:-55119605 | MS.gene54747:CDS |
| AGCAGCGTTGGTGTTATACT+TGG | 0.487190 | 1.4:+55119831 | None:intergenic |
| ATTTAATTATCACAGGGGAT+TGG | 0.494169 | 1.4:-55119170 | MS.gene54747:intron |
| AGTCGCCGGAGTAATGATTC+CGG | 0.494324 | 1.4:-55119700 | MS.gene54747:CDS |
| AAGGACATGGGGTTTAATGA+AGG | 0.494662 | 1.4:-55118137 | MS.gene54747:CDS |
| TCATCTAATAAGAAAGCTGC+TGG | 0.498028 | 1.4:-55117677 | MS.gene54747:CDS |
| TCAAAGGGAAGGCCGCCGAT+GGG | 0.498527 | 1.4:-55119727 | MS.gene54747:CDS |
| GATAGGGAAGGAGGTTCGGG+TGG | 0.503166 | 1.4:-55119664 | MS.gene54747:CDS |
| GCCGGAGTAATGATTCCGGC+TGG | 0.503400 | 1.4:-55119696 | MS.gene54747:CDS |
| GGTGGGAAGTATGTTGGGTT+CGG | 0.503415 | 1.4:-55119451 | MS.gene54747:CDS |
| GCTGCTAATGCTGTTCAGAC+TGG | 0.505364 | 1.4:-55119122 | MS.gene54747:CDS |
| GGAAGGCGGTTATGATCAAA+AGG | 0.509923 | 1.4:-55118209 | MS.gene54747:CDS |
| CGGGTTGGGATTGAAGGTCC+CGG | 0.513419 | 1.4:+55120100 | None:intergenic |
| TCGCAAGGTGGGAAGTATGT+TGG | 0.513815 | 1.4:-55119457 | MS.gene54747:CDS |
| CCCACAATAATGATGCTGGT+TGG | 0.515926 | 1.4:-55117751 | MS.gene54747:CDS |
| GACTTCCACCGTCGCAAGGT+GGG | 0.517045 | 1.4:-55119468 | MS.gene54747:CDS |
| TTTGGCTTCACAGAAGGTTG+AGG | 0.518131 | 1.4:-55118104 | MS.gene54747:CDS |
| CAATTGGAAGCTTCTGCGGC+GGG | 0.519075 | 1.4:-55119544 | MS.gene54747:CDS |
| CTTTGTCGGAAGGTCGGTCG+TGG | 0.519720 | 1.4:-55119783 | MS.gene54747:CDS |
| CCAACCAGCATCATTATTGT+GGG | 0.519854 | 1.4:+55117751 | None:intergenic |
| ACTCAAAAGACATCAGAGAT+TGG | 0.520352 | 1.4:-55118163 | MS.gene54747:CDS |
| TTGCTCCTTTGTGAAGGCAT+CGG | 0.521360 | 1.4:+55119421 | None:intergenic |
| ATGGGAAATCAGATGACGCT+TGG | 0.522747 | 1.4:-55117649 | MS.gene54747:CDS |
| TGTGGATTGCTCCTTTGTGA+AGG | 0.525196 | 1.4:+55119415 | None:intergenic |
| GATCCGTCACCATGGATGCT+TGG | 0.527744 | 1.4:-55119951 | MS.gene54747:CDS |
| GATTTCGGACCAAGCATCCA+TGG | 0.529426 | 1.4:+55119942 | None:intergenic |
| CCGGCTGGGATGATTGGGAT+AGG | 0.534746 | 1.4:-55119681 | MS.gene54747:CDS |
| TCGACGCAGATCTTGTTGCC+GGG | 0.535740 | 1.4:+55120081 | None:intergenic |
| ACGATAAACTGAAGCAGCGT+TGG | 0.536105 | 1.4:+55119819 | None:intergenic |
| TTCAGGCTTTGTCGGAAGGT+CGG | 0.544881 | 1.4:-55119789 | MS.gene54747:CDS |
| CTCCGGCGACTCTGCCCCAT+CGG | 0.545912 | 1.4:+55119712 | None:intergenic |
| TTTAGGAATTTGAACGGCGG+TGG | 0.547735 | 1.4:-55119613 | MS.gene54747:CDS |
| GCTCCCCACAATAATGATGC+TGG | 0.549107 | 1.4:-55117755 | MS.gene54747:CDS |
| GTATTCTATTCCGAAGGAAA+CGG | 0.550054 | 1.4:-55119863 | MS.gene54747:CDS |
| GCTTCTGCGGCGGGTAAAGA+GGG | 0.555155 | 1.4:-55119535 | MS.gene54747:CDS |
| GCGTGATCCTCCGGTTGTGA+AGG | 0.563730 | 1.4:-55119761 | MS.gene54747:CDS |
| TCCGTCGACCTCGATCTCGC+CGG | 0.565057 | 1.4:+55119586 | None:intergenic |
| ATCAGATGACGCTTGGACAG+GGG | 0.565298 | 1.4:-55117642 | MS.gene54747:CDS |
| TGCCAAGTATTCTATTCCGA+AGG | 0.565535 | 1.4:-55119869 | MS.gene54747:CDS |
| TCTTTGTTTCAGGTCAAGGA+AGG | 0.567944 | 1.4:-55118226 | MS.gene54747:intron |
| TACTTCCCACCTTGCGACGG+TGG | 0.568939 | 1.4:+55119463 | None:intergenic |
| GGCGGAGAATGAGTCAAGGC+CGG | 0.569646 | 1.4:-55119494 | MS.gene54747:CDS |
| GTCGCAATTGGAAGCTTCTG+CGG | 0.569797 | 1.4:-55119548 | MS.gene54747:CDS |
| CAAAGGGAAGGCCGCCGATG+GGG | 0.571024 | 1.4:-55119726 | MS.gene54747:CDS |
| GATCATCCATGGCGGCATCA+CGG | 0.576667 | 1.4:-55120128 | None:intergenic |
| AGAATTTAGGTTCAAAGGGA+AGG | 0.577046 | 1.4:-55119738 | MS.gene54747:CDS |
| TCAACTCCTTATTCATCTGG+TGG | 0.577122 | 1.4:-55117860 | MS.gene54747:CDS |
| CGGCTGGGATGATTGGGATA+GGG | 0.577559 | 1.4:-55119680 | MS.gene54747:CDS |
| TCGGAATAGAATACTTGGCA+AGG | 0.577709 | 1.4:+55119872 | None:intergenic |
| TCCCAATCATCCCAAGAGCT+GGG | 0.579490 | 1.4:+55117818 | None:intergenic |
| TTCATGTGCTTAGAATGCTC+CGG | 0.579995 | 1.4:-55120012 | MS.gene54747:CDS |
| GAAGGACTTCCACCGTCGCA+AGG | 0.582983 | 1.4:-55119472 | MS.gene54747:CDS |
| GAGCCGCCGTGATGCCGCCA+TGG | 0.583473 | 1.4:+55120122 | None:intergenic |
| TGGGATAATGCAAAAGATGA+TGG | 0.583815 | 1.4:-55117722 | MS.gene54747:CDS |
| CCTATCCCAATCATCCCAGC+CGG | 0.584873 | 1.4:+55119681 | None:intergenic |
| CCGGAGTAATGATTCCGGCT+GGG | 0.585313 | 1.4:-55119695 | MS.gene54747:CDS |
| TCAGATGACGCTTGGACAGG+GGG | 0.587832 | 1.4:-55117641 | MS.gene54747:CDS |
| GAGGTTCGGGTGGTGATGTG+AGG | 0.591884 | 1.4:-55119654 | MS.gene54747:CDS |
| GATGTGAGGAGTAAGTCGAC+GGG | 0.593326 | 1.4:-55119640 | MS.gene54747:CDS |
| TCAAACTCTTGGGACGATTG+GGG | 0.596473 | 1.4:-55117923 | MS.gene54747:CDS |
| AGGACATGGGGTTTAATGAA+GGG | 0.599160 | 1.4:-55118136 | MS.gene54747:CDS |
| GTGGTGCACCGGCGAGATCG+AGG | 0.600418 | 1.4:-55119594 | MS.gene54747:CDS |
| CCCAGCCGGAATCATTACTC+CGG | 0.606336 | 1.4:+55119695 | None:intergenic |
| CAGTGGGCATCAGTCTCCTA+CGG | 0.607011 | 1.4:-55120039 | MS.gene54747:CDS |
| CTCTCAGAAGAATCCACAGT+GGG | 0.607546 | 1.4:-55120055 | MS.gene54747:CDS |
| GCAATTGGAAGCTTCTGCGG+CGG | 0.607693 | 1.4:-55119545 | MS.gene54747:CDS |
| CGGGACCTTCAATCCCAACC+CGG | 0.609873 | 1.4:-55120099 | MS.gene54747:CDS |
| AAGCATCCATGGTGACGGAT+CGG | 0.610332 | 1.4:+55119953 | None:intergenic |
| TTGTTTCAGGTCAAGGAAGG+CGG | 0.612416 | 1.4:-55118223 | MS.gene54747:intron |
| TTCAATCAAGGGAACAAAGG+AGG | 0.615582 | 1.4:-55118001 | MS.gene54747:CDS |
| AGAGATTGGTCAAAGGACAT+GGG | 0.615964 | 1.4:-55118149 | MS.gene54747:CDS |
| GGACATGGGGTTTAATGAAG+GGG | 0.616409 | 1.4:-55118135 | MS.gene54747:CDS |
| GATTTCAATCAAGGGAACAA+AGG | 0.616794 | 1.4:-55118004 | MS.gene54747:CDS |
| GGACCAAGCATCCATGGTGA+CGG | 0.618778 | 1.4:+55119948 | None:intergenic |
| CATGGTGACGGATCGGACGA+AGG | 0.619426 | 1.4:+55119960 | None:intergenic |
| CGGCGACTCTGCCCCATCGG+CGG | 0.622822 | 1.4:+55119715 | None:intergenic |
| TGATGTGAGGAGTAAGTCGA+CGG | 0.623072 | 1.4:-55119641 | MS.gene54747:CDS |
| GAGAATGAGTCAAGGCCGGA+AGG | 0.624456 | 1.4:-55119490 | MS.gene54747:CDS |
| CTTCGTCCGATCCGTCACCA+TGG | 0.629444 | 1.4:-55119959 | MS.gene54747:CDS |
| GGACTTCCACCGTCGCAAGG+TGG | 0.631829 | 1.4:-55119469 | MS.gene54747:CDS |
| ACATACTTCCCACCTTGCGA+CGG | 0.631937 | 1.4:+55119460 | None:intergenic |
| GATGATTGGGATAGGGAAGG+AGG | 0.632481 | 1.4:-55119673 | MS.gene54747:CDS |
| AGACATCAGAGATTGGTCAA+AGG | 0.632664 | 1.4:-55118156 | MS.gene54747:CDS |
| CAACTCCTTATTCATCTGGT+GGG | 0.634524 | 1.4:-55117859 | MS.gene54747:CDS |
| GGACCACAAAGATTCTAGGA+AGG | 0.638994 | 1.4:-55117798 | MS.gene54747:CDS |
| CGACGGAGGATATTTATTCG+CGG | 0.642927 | 1.4:-55119570 | MS.gene54747:CDS |
| ACTATCAGGATTTCAATCAA+GGG | 0.645448 | 1.4:-55118012 | MS.gene54747:CDS |
| GAGATTGGTCAAAGGACATG+GGG | 0.646826 | 1.4:-55118148 | MS.gene54747:CDS |
| GAAGAGAACAATCTTCATCA+GGG | 0.647329 | 1.4:-55117964 | MS.gene54747:CDS |
| GGCGAGATCGAGGTCGACGG+AGG | 0.649649 | 1.4:-55119584 | MS.gene54747:CDS |
| CAACCAGCATCATTATTGTG+GGG | 0.653135 | 1.4:+55117752 | None:intergenic |
| ACCGGCGAGATCGAGGTCGA+CGG | 0.653631 | 1.4:-55119587 | MS.gene54747:CDS |
| TGGGATGATTGGGATAGGGA+AGG | 0.657232 | 1.4:-55119676 | MS.gene54747:CDS |
| AGATGTGAACACCGAGACCA+CGG | 0.664997 | 1.4:+55119983 | None:intergenic |
| TAAGCACATGAAGATGCCGT+AGG | 0.669663 | 1.4:+55120023 | None:intergenic |
| AAATTCTCCTTCACAACCGG+AGG | 0.674563 | 1.4:+55119754 | None:intergenic |
| AGATGGCGGAGAATGAGTCA+AGG | 0.685000 | 1.4:-55119498 | MS.gene54747:CDS |
| CTAGTCCGATGCCTTCACAA+AGG | 0.693188 | 1.4:-55119426 | MS.gene54747:CDS |
| GACATGGGGTTTAATGAAGG+GGG | 0.697882 | 1.4:-55118134 | MS.gene54747:CDS |
| ATGTGAGGAGTAAGTCGACG+GGG | 0.706562 | 1.4:-55119639 | MS.gene54747:CDS |
| TAGGAGACTGATGCCCACTG+TGG | 0.710667 | 1.4:+55120042 | None:intergenic |
| CATCCATGGCGGCATCACGG+CGG | 0.720125 | 1.4:-55120125 | None:intergenic |
| GAATGCTCCGGAAAACACCG+TGG | 0.731228 | 1.4:-55120000 | MS.gene54747:CDS |
| TGTGAGGAGTAAGTCGACGG+GGG | 0.747661 | 1.4:-55119638 | MS.gene54747:CDS |
| GCTCTCAGAAGAATCCACAG+TGG | 0.805841 | 1.4:-55120056 | MS.gene54747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTATTTAATTATCACA+GGG | - | chr1.4:55118572-55118591 | MS.gene54747:intron | 15.0% |
| !! | TTATTGTATTTAATTATCAC+AGG | - | chr1.4:55118571-55118590 | MS.gene54747:intron | 15.0% |
| !! | AAAAAAGGAAAGAAACTAAT+TGG | + | chr1.4:55119361-55119380 | None:intergenic | 20.0% |
| !! | AAAAAGGAAAGAAACTAATT+GGG | + | chr1.4:55119360-55119379 | None:intergenic | 20.0% |
| !! | AAAATTAGGCAAAGAAAAAA+TGG | + | chr1.4:55119487-55119506 | None:intergenic | 20.0% |
| !! | AAATTAGGCAAAGAAAAAAT+GGG | + | chr1.4:55119486-55119505 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGAAATAAATGA+AGG | - | chr1.4:55119035-55119054 | MS.gene54747:intron | 20.0% |
| !! | ATTGTATTTAATTATCACAG+GGG | - | chr1.4:55118573-55118592 | MS.gene54747:intron | 20.0% |
| !! | GAAAATTTGTATTTGTTTCA+CGG | - | chr1.4:55118727-55118746 | MS.gene54747:intron | 20.0% |
| !! | GCTAAAAAGAAATAAATGAA+GGG | - | chr1.4:55119036-55119055 | MS.gene54747:intron | 20.0% |
| !! | TATACCAATTAATGCAAAAA+AGG | + | chr1.4:55119376-55119395 | None:intergenic | 20.0% |
| !!! | ATTTGGATTATTTTGTTCAT+GGG | - | chr1.4:55118673-55118692 | MS.gene54747:intron | 20.0% |
| !!! | CATTTTTTTGATTTGGATTT+CGG | + | chr1.4:55117824-55117843 | None:intergenic | 20.0% |
| !!! | TATTTGGATTATTTTGTTCA+TGG | - | chr1.4:55118672-55118691 | MS.gene54747:intron | 20.0% |
| !!! | TGTATTGATAATGTATTTGT+GGG | - | chr1.4:55119091-55119110 | MS.gene54747:intron | 20.0% |
| !!! | TTCATTTATTTCTTTTTAGC+TGG | + | chr1.4:55119036-55119055 | None:intergenic | 20.0% |
| ! | CAACAAATTGAACTAATACA+TGG | + | chr1.4:55118776-55118795 | None:intergenic | 25.0% |
| ! | CGAAATCCAAATCAAAAAAA+TGG | - | chr1.4:55117822-55117841 | MS.gene54747:CDS | 25.0% |
| ! | TGACTGCATTAAAAAGATAA+CGG | + | chr1.4:55118997-55119016 | None:intergenic | 25.0% |
| ! | TGATTACATTCAATTACTAC+CGG | - | chr1.4:55118472-55118491 | MS.gene54747:intron | 25.0% |
| ! | TTGAATGTAATCAAATGTGT+CGG | + | chr1.4:55118465-55118484 | None:intergenic | 25.0% |
| !! | CTATTTGATAACACTTATCT+CGG | + | chr1.4:55118887-55118906 | None:intergenic | 25.0% |
| !! | GAAAAATAATCATTTTGCTG+TGG | + | chr1.4:55118354-55118373 | None:intergenic | 25.0% |
| !!! | CTTTCCTTTTTTGCATTAAT+TGG | - | chr1.4:55119369-55119388 | MS.gene54747:intron | 25.0% |
| !!! | GGATTTGATAACTTTTATGA+AGG | - | chr1.4:55120047-55120066 | MS.gene54747:CDS | 25.0% |
| !!! | GTGTATTGATAATGTATTTG+TGG | - | chr1.4:55119090-55119109 | MS.gene54747:intron | 25.0% |
| !!! | TGATTTTATTTCAATTGCAC+TGG | + | chr1.4:55119320-55119339 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTGTTGTTTCAC+AGG | - | chr1.4:55118365-55118384 | MS.gene54747:intron | 25.0% |
| !!! | TTTGGATTATTTTGTTCATG+GGG | - | chr1.4:55118674-55118693 | MS.gene54747:intron | 25.0% |
| !!! | TTTTTTTTGCTCTTTGTTTC+AGG | - | chr1.4:55119512-55119531 | MS.gene54747:CDS | 25.0% |
| ACTATCAGGATTTCAATCAA+GGG | - | chr1.4:55119736-55119755 | MS.gene54747:CDS | 30.0% | |
| ATTTAATTATCACAGGGGAT+TGG | - | chr1.4:55118578-55118597 | MS.gene54747:intron | 30.0% | |
| CAAATCAAAAAAATGGAAGC+TGG | - | chr1.4:55117829-55117848 | MS.gene54747:CDS | 30.0% | |
| CAAATTCGACTACTAATAAC+TGG | - | chr1.4:55119685-55119704 | MS.gene54747:CDS | 30.0% | |
| CACAAAAGAGATTACTTCTA+AGG | - | chr1.4:55118649-55118668 | MS.gene54747:intron | 30.0% | |
| CATGCTTTATAGTTGATTAG+TGG | - | chr1.4:55118525-55118544 | MS.gene54747:intron | 30.0% | |
| CGAAATGAGAATGATAGAAA+TGG | - | chr1.4:55119711-55119730 | MS.gene54747:CDS | 30.0% | |
| TACTATCAGGATTTCAATCA+AGG | - | chr1.4:55119735-55119754 | MS.gene54747:CDS | 30.0% | |
| ! | AAGGAGAATTTAGGTTCAAA+GGG | - | chr1.4:55118006-55118025 | MS.gene54747:CDS | 30.0% |
| ! | TATGACTTTTAGCATAGTGT+GGG | - | chr1.4:55119251-55119270 | MS.gene54747:intron | 30.0% |
| ! | TTATGACTTTTAGCATAGTG+TGG | - | chr1.4:55119250-55119269 | MS.gene54747:intron | 30.0% |
| !! | GAGATTACTTCTAAGGTATT+TGG | - | chr1.4:55118656-55118675 | MS.gene54747:intron | 30.0% |
| !! | GGGAATTGATAATGTTAACT+TGG | - | chr1.4:55119111-55119130 | MS.gene54747:CDS | 30.0% |
| !!! | CAGCTTCCATTTTTTTGATT+TGG | + | chr1.4:55117831-55117850 | None:intergenic | 30.0% |
| AAACTCAAAGCTCAAACTCT+TGG | - | chr1.4:55119814-55119833 | MS.gene54747:CDS | 35.0% | |
| AAAGGAGGTAATTCTTCTAC+TGG | - | chr1.4:55119762-55119781 | MS.gene54747:CDS | 35.0% | |
| AACTCAAAGCTCAAACTCTT+GGG | - | chr1.4:55119815-55119834 | MS.gene54747:CDS | 35.0% | |
| AAGGGAGAACCTACTAATAA+AGG | - | chr1.4:55119864-55119883 | MS.gene54747:CDS | 35.0% | |
| ACAGTGGATGTTAATTGGAT+CGG | - | chr1.4:55119212-55119231 | MS.gene54747:intron | 35.0% | |
| ACATGGTAGAAATATCCCTA+AGG | + | chr1.4:55118759-55118778 | None:intergenic | 35.0% | |
| ACTCAAAAGACATCAGAGAT+TGG | - | chr1.4:55119585-55119604 | MS.gene54747:CDS | 35.0% | |
| AGTCATATTCATATCTACGG+AGG | + | chr1.4:55118442-55118461 | None:intergenic | 35.0% | |
| ATCAAAAAAATGGAAGCTGG+TGG | - | chr1.4:55117832-55117851 | MS.gene54747:CDS | 35.0% | |
| CATGACTCGTAGAAAAACAA+AGG | + | chr1.4:55118410-55118429 | None:intergenic | 35.0% | |
| CGGAGTCATATTCATATCTA+CGG | + | chr1.4:55118445-55118464 | None:intergenic | 35.0% | |
| GAAGAGAACAATCTTCATCA+GGG | - | chr1.4:55119784-55119803 | MS.gene54747:CDS | 35.0% | |
| GATTTCAATCAAGGGAACAA+AGG | - | chr1.4:55119744-55119763 | MS.gene54747:CDS | 35.0% | |
| GTAACAATATCCGTTTCCTT+CGG | + | chr1.4:55117898-55117917 | None:intergenic | 35.0% | |
| GTATTCTATTCCGAAGGAAA+CGG | - | chr1.4:55117885-55117904 | MS.gene54747:CDS | 35.0% | |
| TCAGAACAGTGGATGTTAAT+TGG | - | chr1.4:55119207-55119226 | MS.gene54747:intron | 35.0% | |
| TCATCTAATAAGAAAGCTGC+TGG | - | chr1.4:55120071-55120090 | MS.gene54747:CDS | 35.0% | |
| TGATAGAAATGGCTACTATC+AGG | - | chr1.4:55119722-55119741 | MS.gene54747:CDS | 35.0% | |
| TGATGTGTGATTGACAATAC+TGG | - | chr1.4:55118967-55118986 | MS.gene54747:intron | 35.0% | |
| TGGGATAATGCAAAAGATGA+TGG | - | chr1.4:55120026-55120045 | MS.gene54747:CDS | 35.0% | |
| TTCCTTCGGAATAGAATACT+TGG | + | chr1.4:55117884-55117903 | None:intergenic | 35.0% | |
| ! | AGAATTTAGGTTCAAAGGGA+AGG | - | chr1.4:55118010-55118029 | MS.gene54747:CDS | 35.0% |
| ! | ATGACTTTTAGCATAGTGTG+GGG | - | chr1.4:55119252-55119271 | MS.gene54747:intron | 35.0% |
| ! | GAAGGAGAATTTAGGTTCAA+AGG | - | chr1.4:55118005-55118024 | MS.gene54747:CDS | 35.0% |
| ! | GGAGTTGATCCTTTATTAGT+AGG | + | chr1.4:55119876-55119895 | None:intergenic | 35.0% |
| !! | GATTTTAGGAATTTGAACGG+CGG | - | chr1.4:55118132-55118151 | MS.gene54747:CDS | 35.0% |
| !! | GGGGATTTTAGGAATTTGAA+CGG | - | chr1.4:55118129-55118148 | MS.gene54747:CDS | 35.0% |
| !! | TGCTAACTGTTTGCTTTTCA+CGG | - | chr1.4:55119447-55119466 | MS.gene54747:CDS | 35.0% |
| !!! | ATTTTTTGCGAAGAAGATGG+CGG | - | chr1.4:55118236-55118255 | MS.gene54747:intron | 35.0% |
| !!! | TAGCTGTTTTTCGAATTCCA+CGG | + | chr1.4:55118843-55118862 | None:intergenic | 35.0% |
| AAGAAAGCTGCTGGACATAA+TGG | - | chr1.4:55120080-55120099 | MS.gene54747:CDS | 40.0% | |
| AAGGACATGGGGTTTAATGA+AGG | - | chr1.4:55119611-55119630 | MS.gene54747:CDS | 40.0% | |
| AGAAAGCTGCTGGACATAAT+GGG | - | chr1.4:55120081-55120100 | MS.gene54747:CDS | 40.0% | |
| AGCTGTTGAATGAGGTCAAT+AGG | - | chr1.4:55119283-55119302 | MS.gene54747:intron | 40.0% | |
| AGGACATGGGGTTTAATGAA+GGG | - | chr1.4:55119612-55119631 | MS.gene54747:CDS | 40.0% | |
| AGTACCTTCATGATTGTCTC+TGG | - | chr1.4:55119410-55119429 | MS.gene54747:CDS | 40.0% | |
| AGTTTATCGTGATCGGATTC+AGG | - | chr1.4:55117942-55117961 | MS.gene54747:CDS | 40.0% | |
| ATTGGGACCACAAAGATTCT+AGG | - | chr1.4:55119946-55119965 | MS.gene54747:CDS | 40.0% | |
| ATTGGGGCCAAAAAGATAGT+TGG | - | chr1.4:55119841-55119860 | MS.gene54747:CDS | 40.0% | |
| CAACCAGCATCATTATTGTG+GGG | + | chr1.4:55119999-55120018 | None:intergenic | 40.0% | |
| CAACTCCTTATTCATCTGGT+GGG | - | chr1.4:55119889-55119908 | MS.gene54747:CDS | 40.0% | |
| CCAACCAGCATCATTATTGT+GGG | + | chr1.4:55120000-55120019 | None:intergenic | 40.0% | |
| CCTAAATTCTCCTTCACAAC+CGG | + | chr1.4:55118000-55118019 | None:intergenic | 40.0% | |
| CTAGTATGCTATAGCACTAC+AGG | + | chr1.4:55118917-55118936 | None:intergenic | 40.0% | |
| CTGCTTCAGTTTATCGTGAT+CGG | - | chr1.4:55117935-55117954 | MS.gene54747:CDS | 40.0% | |
| CTTCCTTCCTAGAATCTTTG+TGG | + | chr1.4:55119956-55119975 | None:intergenic | 40.0% | |
| GCTATCTGATAACACTGTAG+TGG | + | chr1.4:55118812-55118831 | None:intergenic | 40.0% | |
| GCTGTTGAATGAGGTCAATA+GGG | - | chr1.4:55119284-55119303 | MS.gene54747:intron | 40.0% | |
| GGAAGAGAACAATCTTCATC+AGG | - | chr1.4:55119783-55119802 | MS.gene54747:CDS | 40.0% | |
| GGATCAACTCCTTATTCATC+TGG | - | chr1.4:55119885-55119904 | MS.gene54747:CDS | 40.0% | |
| GGCCAAAAAGATAGTTGGAA+GGG | - | chr1.4:55119846-55119865 | MS.gene54747:CDS | 40.0% | |
| TAGAGGAAAGCTGTTGAATG+AGG | - | chr1.4:55119275-55119294 | MS.gene54747:intron | 40.0% | |
| TATTTATTCGCGGTCGCAAT+TGG | - | chr1.4:55118188-55118207 | MS.gene54747:CDS | 40.0% | |
| TCAACTCCTTATTCATCTGG+TGG | - | chr1.4:55119888-55119907 | MS.gene54747:CDS | 40.0% | |
| TCGGAATAGAATACTTGGCA+AGG | + | chr1.4:55117879-55117898 | None:intergenic | 40.0% | |
| TGCCAAGTATTCTATTCCGA+AGG | - | chr1.4:55117879-55117898 | MS.gene54747:CDS | 40.0% | |
| TTCAATCAAGGGAACAAAGG+AGG | - | chr1.4:55119747-55119766 | MS.gene54747:CDS | 40.0% | |
| TTCATGTGCTTAGAATGCTC+CGG | - | chr1.4:55117736-55117755 | MS.gene54747:CDS | 40.0% | |
| ! | AGACATCAGAGATTGGTCAA+AGG | - | chr1.4:55119592-55119611 | MS.gene54747:CDS | 40.0% |
| ! | AGAGATTGGTCAAAGGACAT+GGG | - | chr1.4:55119599-55119618 | MS.gene54747:CDS | 40.0% |
| ! | CCACAATAATGATGCTGGTT+GGG | - | chr1.4:55119998-55120017 | MS.gene54747:CDS | 40.0% |
| ! | CTCCCTTCCAACTATCTTTT+TGG | + | chr1.4:55119851-55119870 | None:intergenic | 40.0% |
| ! | TCTTTGTTTCAGGTCAAGGA+AGG | - | chr1.4:55119522-55119541 | MS.gene54747:CDS | 40.0% |
| ! | TTGCTCTTTGTTTCAGGTCA+AGG | - | chr1.4:55119518-55119537 | MS.gene54747:CDS | 40.0% |
| !! | GCTTTTCACGGTATTTTTGC+TGG | - | chr1.4:55119459-55119478 | MS.gene54747:CDS | 40.0% |
| !!! | GGGATTTTTTGCGAAGAAGA+TGG | - | chr1.4:55118233-55118252 | MS.gene54747:intron | 40.0% |
| AAATCAGATGACGCTTGGAC+AGG | - | chr1.4:55120104-55120123 | MS.gene54747:CDS | 45.0% | |
| AAATTCTCCTTCACAACCGG+AGG | + | chr1.4:55117997-55118016 | None:intergenic | 45.0% | |
| AATCAGATGACGCTTGGACA+GGG | - | chr1.4:55120105-55120124 | MS.gene54747:CDS | 45.0% | |
| ACGATAAACTGAAGCAGCGT+TGG | + | chr1.4:55117932-55117951 | None:intergenic | 45.0% | |
| ATGGGAAATCAGATGACGCT+TGG | - | chr1.4:55120099-55120118 | MS.gene54747:CDS | 45.0% | |
| CCCAACCAGCATCATTATTG+TGG | + | chr1.4:55120001-55120020 | None:intergenic | 45.0% | |
| CCCACAATAATGATGCTGGT+TGG | - | chr1.4:55119997-55120016 | MS.gene54747:CDS | 45.0% | |
| CCGGTTGTGAAGGAGAATTT+AGG | - | chr1.4:55117997-55118016 | MS.gene54747:CDS | 45.0% | |
| CGACGGAGGATATTTATTCG+CGG | - | chr1.4:55118178-55118197 | MS.gene54747:CDS | 45.0% | |
| CTCAAACTCTTGGGACGATT+GGG | - | chr1.4:55119824-55119843 | MS.gene54747:CDS | 45.0% | |
| CTCTCAGAAGAATCCACAGT+GGG | - | chr1.4:55117693-55117712 | MS.gene54747:CDS | 45.0% | |
| GACATGGGGTTTAATGAAGG+GGG | - | chr1.4:55119614-55119633 | MS.gene54747:CDS | 45.0% | |
| GATGCCAGAGACAATCATGA+AGG | + | chr1.4:55119417-55119436 | None:intergenic | 45.0% | |
| GGAAGGCGGTTATGATCAAA+AGG | - | chr1.4:55119539-55119558 | MS.gene54747:CDS | 45.0% | |
| GGACATGGGGTTTAATGAAG+GGG | - | chr1.4:55119613-55119632 | MS.gene54747:CDS | 45.0% | |
| GGGCCAAAAAGATAGTTGGA+AGG | - | chr1.4:55119845-55119864 | MS.gene54747:CDS | 45.0% | |
| GTTTCACGGAATGCACCTTA+GGG | - | chr1.4:55118741-55118760 | MS.gene54747:intron | 45.0% | |
| TAAGCACATGAAGATGCCGT+AGG | + | chr1.4:55117728-55117747 | None:intergenic | 45.0% | |
| TACTCACAATCCCAGCTCTT+GGG | - | chr1.4:55119920-55119939 | MS.gene54747:CDS | 45.0% | |
| TCAAACTCTTGGGACGATTG+GGG | - | chr1.4:55119825-55119844 | MS.gene54747:CDS | 45.0% | |
| TCAGATAGCTGATATAGCCG+TGG | - | chr1.4:55118823-55118842 | MS.gene54747:intron | 45.0% | |
| TCTCGGCATATCACAAATCG+TGG | + | chr1.4:55118870-55118889 | None:intergenic | 45.0% | |
| TGATGTGAGGAGTAAGTCGA+CGG | - | chr1.4:55118107-55118126 | MS.gene54747:CDS | 45.0% | |
| TGTTTCACGGAATGCACCTT+AGG | - | chr1.4:55118740-55118759 | MS.gene54747:intron | 45.0% | |
| TTTAGCATAGTGTGGGGTAG+AGG | - | chr1.4:55119258-55119277 | MS.gene54747:intron | 45.0% | |
| TTTAGGAATTTGAACGGCGG+TGG | - | chr1.4:55118135-55118154 | MS.gene54747:CDS | 45.0% | |
| ! | AATAATGATGCTGGTTGGGC+TGG | - | chr1.4:55120002-55120021 | MS.gene54747:CDS | 45.0% |
| ! | CAGAGATTGGTCAAAGGACA+TGG | - | chr1.4:55119598-55119617 | MS.gene54747:CDS | 45.0% |
| ! | GAGATTGGTCAAAGGACATG+GGG | - | chr1.4:55119600-55119619 | MS.gene54747:CDS | 45.0% |
| ! | GGACCACAAAGATTCTAGGA+AGG | - | chr1.4:55119950-55119969 | MS.gene54747:CDS | 45.0% |
| ! | GGGGATTGGTAAGTTGTCAT+TGG | - | chr1.4:55118592-55118611 | MS.gene54747:intron | 45.0% |
| ! | TGATCGGATTCAGGCTTTGT+CGG | - | chr1.4:55117951-55117970 | MS.gene54747:CDS | 45.0% |
| ! | TGTGGATTGCTCCTTTGTGA+AGG | + | chr1.4:55118336-55118355 | None:intergenic | 45.0% |
| ! | TTGCTCCTTTGTGAAGGCAT+CGG | + | chr1.4:55118330-55118349 | None:intergenic | 45.0% |
| ! | TTGTTTCAGGTCAAGGAAGG+CGG | - | chr1.4:55119525-55119544 | MS.gene54747:CDS | 45.0% |
| ! | TTTGGCTTCACAGAAGGTTG+AGG | - | chr1.4:55119644-55119663 | MS.gene54747:CDS | 45.0% |
| !! | AGCAGCGTTGGTGTTATACT+TGG | + | chr1.4:55117920-55117939 | None:intergenic | 45.0% |
| !! | CAAAAAAAAAAAAAAAAATT+AGG | + | chr1.4:55119501-55119520 | None:intergenic | 5.0% |
| AATGAAGGGGGTCATGGCTT+TGG | - | chr1.4:55119626-55119645 | MS.gene54747:CDS | 50.0% | |
| ACATACTTCCCACCTTGCGA+CGG | + | chr1.4:55118291-55118310 | None:intergenic | 50.0% | |
| AGATGTGAACACCGAGACCA+CGG | + | chr1.4:55117768-55117787 | None:intergenic | 50.0% | |
| AGTCGCCGGAGTAATGATTC+CGG | - | chr1.4:55118048-55118067 | MS.gene54747:CDS | 50.0% | |
| ATCAGATGACGCTTGGACAG+GGG | - | chr1.4:55120106-55120125 | MS.gene54747:CDS | 50.0% | |
| ATCCCAGCTCTTGGGATGAT+TGG | - | chr1.4:55119928-55119947 | MS.gene54747:CDS | 50.0% | |
| ATCGACGCAGATCTTGTTGC+CGG | + | chr1.4:55117671-55117690 | None:intergenic | 50.0% | |
| ATGATTCCGGCTGGGATGAT+TGG | - | chr1.4:55118061-55118080 | MS.gene54747:CDS | 50.0% | |
| ATGTGAGGAGTAAGTCGACG+GGG | - | chr1.4:55118109-55118128 | MS.gene54747:CDS | 50.0% | |
| CTAGTCCGATGCCTTCACAA+AGG | - | chr1.4:55118322-55118341 | MS.gene54747:intron | 50.0% | |
| GACTGCCCACCAGATGAATA+AGG | + | chr1.4:55119897-55119916 | None:intergenic | 50.0% | |
| GATGATTGGGATAGGGAAGG+AGG | - | chr1.4:55118075-55118094 | MS.gene54747:CDS | 50.0% | |
| GATGTGAGGAGTAAGTCGAC+GGG | - | chr1.4:55118108-55118127 | MS.gene54747:CDS | 50.0% | |
| GATTTCGGACCAAGCATCCA+TGG | + | chr1.4:55117809-55117828 | None:intergenic | 50.0% | |
| GCTCAAACTCTTGGGACGAT+TGG | - | chr1.4:55119823-55119842 | MS.gene54747:CDS | 50.0% | |
| GCTCCCCACAATAATGATGC+TGG | - | chr1.4:55119993-55120012 | MS.gene54747:CDS | 50.0% | |
| GCTCTCAGAAGAATCCACAG+TGG | - | chr1.4:55117692-55117711 | MS.gene54747:CDS | 50.0% | |
| GCTGCTAATGCTGTTCAGAC+TGG | - | chr1.4:55118626-55118645 | MS.gene54747:intron | 50.0% | |
| GGGTTTAATGAAGGGGGTCA+TGG | - | chr1.4:55119620-55119639 | MS.gene54747:CDS | 50.0% | |
| GTACTCACAATCCCAGCTCT+TGG | - | chr1.4:55119919-55119938 | MS.gene54747:CDS | 50.0% | |
| GTCGCAATTGGAAGCTTCTG+CGG | - | chr1.4:55118200-55118219 | MS.gene54747:CDS | 50.0% | |
| TCCCAATCATCCCAAGAGCT+GGG | + | chr1.4:55119933-55119952 | None:intergenic | 50.0% | |
| TCCCAGCTCTTGGGATGATT+GGG | - | chr1.4:55119929-55119948 | MS.gene54747:CDS | 50.0% | |
| TGATTCCGGCTGGGATGATT+GGG | - | chr1.4:55118062-55118081 | MS.gene54747:CDS | 50.0% | |
| TGGGATGATTGGGATAGGGA+AGG | - | chr1.4:55118072-55118091 | MS.gene54747:CDS | 50.0% | |
| TTGGGATAGGGAAGGAGGTT+CGG | - | chr1.4:55118080-55118099 | MS.gene54747:CDS | 50.0% | |
| ! | ATCCACTGTTCTGAGCAACG+AGG | + | chr1.4:55119201-55119220 | None:intergenic | 50.0% |
| ! | CGCAAGGTGGGAAGTATGTT+GGG | - | chr1.4:55118292-55118311 | MS.gene54747:intron | 50.0% |
| ! | GGTGGGAAGTATGTTGGGTT+CGG | - | chr1.4:55118297-55118316 | MS.gene54747:intron | 50.0% |
| ! | GTAAGTCGACGGGGGATTTT+AGG | - | chr1.4:55118118-55118137 | MS.gene54747:CDS | 50.0% |
| ! | TATTCATCTGGTGGGCAGTC+TGG | - | chr1.4:55119897-55119916 | MS.gene54747:CDS | 50.0% |
| ! | TCGCAAGGTGGGAAGTATGT+TGG | - | chr1.4:55118291-55118310 | MS.gene54747:intron | 50.0% |
| ! | TTCAGGCTTTGTCGGAAGGT+CGG | - | chr1.4:55117959-55117978 | MS.gene54747:CDS | 50.0% |
| !! | AAGCATCCATGGTGACGGAT+CGG | + | chr1.4:55117798-55117817 | None:intergenic | 50.0% |
| !! | AGATGGCGGAGAATGAGTCA+AGG | - | chr1.4:55118250-55118269 | MS.gene54747:intron | 50.0% |
| !! | CATGGCTTTGGCTTCACAGA+AGG | - | chr1.4:55119638-55119657 | MS.gene54747:CDS | 50.0% |
| AGCATGCACACACACACACC+CGG | + | chr1.4:55118511-55118530 | None:intergenic | 55.0% | |
| CAATTGGAAGCTTCTGCGGC+GGG | - | chr1.4:55118204-55118223 | MS.gene54747:CDS | 55.0% | |
| CAGTGGGCATCAGTCTCCTA+CGG | - | chr1.4:55117709-55117728 | MS.gene54747:CDS | 55.0% | |
| CCCAGCCGGAATCATTACTC+CGG | + | chr1.4:55118056-55118075 | None:intergenic | 55.0% | |
| CCGGAGTAATGATTCCGGCT+GGG | - | chr1.4:55118053-55118072 | MS.gene54747:CDS | 55.0% | |
| CCTATCCCAATCATCCCAGC+CGG | + | chr1.4:55118070-55118089 | None:intergenic | 55.0% | |
| CGGCTGGGATGATTGGGATA+GGG | - | chr1.4:55118068-55118087 | MS.gene54747:CDS | 55.0% | |
| GAATGCTCCGGAAAACACCG+TGG | - | chr1.4:55117748-55117767 | MS.gene54747:CDS | 55.0% | |
| GAGAATGAGTCAAGGCCGGA+AGG | - | chr1.4:55118258-55118277 | MS.gene54747:intron | 55.0% | |
| GATCCGTCACCATGGATGCT+TGG | - | chr1.4:55117797-55117816 | MS.gene54747:CDS | 55.0% | |
| GCAATTGGAAGCTTCTGCGG+CGG | - | chr1.4:55118203-55118222 | MS.gene54747:CDS | 55.0% | |
| GCAGATCTTGTTGCCGGGTT+GGG | + | chr1.4:55117665-55117684 | None:intergenic | 55.0% | |
| GGACCAAGCATCCATGGTGA+CGG | + | chr1.4:55117803-55117822 | None:intergenic | 55.0% | |
| GTCCCAATCATCCCAAGAGC+TGG | + | chr1.4:55119934-55119953 | None:intergenic | 55.0% | |
| TAGGAGACTGATGCCCACTG+TGG | + | chr1.4:55117709-55117728 | None:intergenic | 55.0% | |
| TCAGATGACGCTTGGACAGG+GGG | - | chr1.4:55120107-55120126 | MS.gene54747:CDS | 55.0% | |
| TCCGGAAAACACCGTGGTCT+CGG | - | chr1.4:55117754-55117773 | MS.gene54747:CDS | 55.0% | |
| TCGACGCAGATCTTGTTGCC+GGG | + | chr1.4:55117670-55117689 | None:intergenic | 55.0% | |
| TGCCTCGTTGCTCAGAACAG+TGG | - | chr1.4:55119196-55119215 | MS.gene54747:intron | 55.0% | |
| TGGGATAGGGAAGGAGGTTC+GGG | - | chr1.4:55118081-55118100 | MS.gene54747:CDS | 55.0% | |
| TGGGGAGCTGATGCTTTAGC+TGG | + | chr1.4:55119981-55120000 | None:intergenic | 55.0% | |
| TGTGAGGAGTAAGTCGACGG+GGG | - | chr1.4:55118110-55118129 | MS.gene54747:CDS | 55.0% | |
| ! | ACCGAGACCACGGTGTTTTC+CGG | + | chr1.4:55117758-55117777 | None:intergenic | 55.0% |
| ! | CGGATTCAGGCTTTGTCGGA+AGG | - | chr1.4:55117955-55117974 | MS.gene54747:CDS | 55.0% |
| ! | TACCGGTGTCAGTGTTGTGC+CGG | - | chr1.4:55118489-55118508 | MS.gene54747:intron | 55.0% |
| ! | TGTTGCCGGGTTGGGATTGA+AGG | + | chr1.4:55117657-55117676 | None:intergenic | 55.0% |
| ACCCGGCACAACACTGACAC+CGG | + | chr1.4:55118494-55118513 | None:intergenic | 60.0% | |
| AGCTTCTGCGGCGGGTAAAG+AGG | - | chr1.4:55118212-55118231 | MS.gene54747:CDS | 60.0% | |
| CCGGCTGGGATGATTGGGAT+AGG | - | chr1.4:55118067-55118086 | MS.gene54747:CDS | 60.0% | |
| CGCAGATCTTGTTGCCGGGT+TGG | + | chr1.4:55117666-55117685 | None:intergenic | 60.0% | |
| CGGGACCTTCAATCCCAACC+CGG | - | chr1.4:55117649-55117668 | MS.gene54747:CDS | 60.0% | |
| CTTCGTCCGATCCGTCACCA+TGG | - | chr1.4:55117789-55117808 | MS.gene54747:CDS | 60.0% | |
| CTTTGTCGGAAGGTCGGTCG+TGG | - | chr1.4:55117965-55117984 | MS.gene54747:CDS | 60.0% | |
| GAAGGACTTCCACCGTCGCA+AGG | - | chr1.4:55118276-55118295 | MS.gene54747:intron | 60.0% | |
| GACTTCCACCGTCGCAAGGT+GGG | - | chr1.4:55118280-55118299 | MS.gene54747:intron | 60.0% | |
| GATAGGGAAGGAGGTTCGGG+TGG | - | chr1.4:55118084-55118103 | MS.gene54747:CDS | 60.0% | |
| GCCGGAGTAATGATTCCGGC+TGG | - | chr1.4:55118052-55118071 | MS.gene54747:CDS | 60.0% | |
| GCGTGATCCTCCGGTTGTGA+AGG | - | chr1.4:55117987-55118006 | MS.gene54747:CDS | 60.0% | |
| GCTTCTGCGGCGGGTAAAGA+GGG | - | chr1.4:55118213-55118232 | MS.gene54747:CDS | 60.0% | |
| GGCGGAGAATGAGTCAAGGC+CGG | - | chr1.4:55118254-55118273 | MS.gene54747:intron | 60.0% | |
| TACTTCCCACCTTGCGACGG+TGG | + | chr1.4:55118288-55118307 | None:intergenic | 60.0% | |
| TCAAAGGGAAGGCCGCCGAT+GGG | - | chr1.4:55118021-55118040 | MS.gene54747:CDS | 60.0% | |
| TGCGACGGTGGAAGTCCTTC+CGG | + | chr1.4:55118276-55118295 | None:intergenic | 60.0% | |
| TTCAAAGGGAAGGCCGCCGA+TGG | - | chr1.4:55118020-55118039 | MS.gene54747:CDS | 60.0% | |
| TTTGAACGGCGGTGGTGCAC+CGG | - | chr1.4:55118143-55118162 | MS.gene54747:CDS | 60.0% | |
| ! | ACCGGTGTCAGTGTTGTGCC+GGG | - | chr1.4:55118490-55118509 | MS.gene54747:intron | 60.0% |
| ! | CGGGTTGGGATTGAAGGTCC+CGG | + | chr1.4:55117651-55117670 | None:intergenic | 60.0% |
| ! | GAGGTTCGGGTGGTGATGTG+AGG | - | chr1.4:55118094-55118113 | MS.gene54747:CDS | 60.0% |
| !! | ATGATGCTGGTTGGGCTGGC+TGG | - | chr1.4:55120006-55120025 | MS.gene54747:CDS | 60.0% |
| !! | CATGGTGACGGATCGGACGA+AGG | + | chr1.4:55117791-55117810 | None:intergenic | 60.0% |
| !! | TGATGCTGGTTGGGCTGGCT+GGG | - | chr1.4:55120007-55120026 | MS.gene54747:CDS | 60.0% |
| ACCGGCGAGATCGAGGTCGA+CGG | - | chr1.4:55118161-55118180 | MS.gene54747:CDS | 65.0% | |
| CAAAGGGAAGGCCGCCGATG+GGG | - | chr1.4:55118022-55118041 | MS.gene54747:CDS | 65.0% | |
| GATGACGCTTGGACAGGGGG+TGG | - | chr1.4:55120110-55120129 | MS.gene54747:CDS | 65.0% | |
| GGACTTCCACCGTCGCAAGG+TGG | - | chr1.4:55118279-55118298 | MS.gene54747:intron | 65.0% | |
| TCCGTCGACCTCGATCTCGC+CGG | + | chr1.4:55118165-55118184 | None:intergenic | 65.0% | |
| TCGGTCGTGGCGTGATCCTC+CGG | - | chr1.4:55117978-55117997 | MS.gene54747:CDS | 65.0% | |
| CTCCGGCGACTCTGCCCCAT+CGG | + | chr1.4:55118039-55118058 | None:intergenic | 70.0% | |
| GGCGAGATCGAGGTCGACGG+AGG | - | chr1.4:55118164-55118183 | MS.gene54747:CDS | 70.0% | |
| ! | GTGGTGCACCGGCGAGATCG+AGG | - | chr1.4:55118154-55118173 | MS.gene54747:CDS | 70.0% |
| CGCCGATGGGGCAGAGTCGC+CGG | - | chr1.4:55118034-55118053 | MS.gene54747:CDS | 75.0% | |
| CGGCGACTCTGCCCCATCGG+CGG | + | chr1.4:55118036-55118055 | None:intergenic | 75.0% | |
| TGGCGGCATCACGGCGGCTC+CGG | - | chr1.4:55117629-55117648 | MS.gene54747:CDS | 75.0% | |
| ! | GGCGGCATCACGGCGGCTCC+GGG | - | chr1.4:55117630-55117649 | MS.gene54747:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 55117628 | 55120142 | 55117628 | ID=MS.gene54747 |
| chr1.4 | mRNA | 55117628 | 55120142 | 55117628 | ID=MS.gene54747.t1;Parent=MS.gene54747 |
| chr1.4 | exon | 55119384 | 55120142 | 55119384 | ID=MS.gene54747.t1.exon1;Parent=MS.gene54747.t1 |
| chr1.4 | CDS | 55119384 | 55120142 | 55119384 | ID=cds.MS.gene54747.t1;Parent=MS.gene54747.t1 |
| chr1.4 | exon | 55119100 | 55119177 | 55119100 | ID=MS.gene54747.t1.exon2;Parent=MS.gene54747.t1 |
| chr1.4 | CDS | 55119100 | 55119177 | 55119100 | ID=cds.MS.gene54747.t1;Parent=MS.gene54747.t1 |
| chr1.4 | exon | 55117628 | 55118236 | 55117628 | ID=MS.gene54747.t1.exon3;Parent=MS.gene54747.t1 |
| chr1.4 | CDS | 55117628 | 55118236 | 55117628 | ID=cds.MS.gene54747.t1;Parent=MS.gene54747.t1 |
| Gene Sequence |
| Protein sequence |
