Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56304.t1 | XP_003598328.1 | 75.8 | 499 | 20 | 1 | 1 | 398 | 247 | 745 | 5.20E-198 | 700.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56304.t1 | G7IVE1 | 75.8 | 499 | 20 | 1 | 1 | 398 | 247 | 745 | 3.8e-198 | 700.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene56304 | 0.834299 | 3.25E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene56304 | 0.829016 | 6.52E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene56304 | 0.824484 | 7.87E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene56304 | 0.827626 | 1.41E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene56304 | 0.827709 | 1.35E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene56304 | 0.800107 | 1.68E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene56304 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene05132 | MS.gene56304 | 0.805034 | 1.62E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene56304 | 0.817409 | 3.35E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene56304 | 0.841566 | 4.40E-58 | -1.69E-46 |
| MS.gene052333 | MS.gene56304 | 0.830397 | 3.00E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene56304 | 0.849529 | 3.05E-60 | -1.69E-46 |
| MS.gene053226 | MS.gene56304 | 0.81174 | 6.02E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene56304 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene56304 | 0.834737 | 2.52E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene56304 | -0.836764 | 7.73E-57 | -1.69E-46 |
| MS.gene054467 | MS.gene56304 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene56304 | 0.819553 | 1.09E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene56304 | 0.813106 | 3.03E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene56304 | 0.807651 | 4.55E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene56304 | 0.819676 | 1.02E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene56304 | 0.803361 | 3.62E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene56304 | 0.824683 | 7.07E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene56304 | 0.811049 | 8.50E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene56304 | 0.831739 | 1.41E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene56304 | 0.805513 | 1.29E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene56304 | 0.857822 | 1.26E-62 | -1.69E-46 |
| MS.gene056498 | MS.gene56304 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene56304 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene057012 | MS.gene56304 | 0.814674 | 1.37E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene56304 | 0.812609 | 3.89E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene56304 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene56304 | 0.814258 | 1.69E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene56304 | 0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene56304 | 0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene56304 | 0.802873 | 4.56E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene56304 | 0.81858 | 1.82E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene56304 | 0.818486 | 1.91E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene56304 | 0.819779 | 9.71E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene56304 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene56304 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene56304 | -0.818154 | 2.27E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene56304 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene56304 | 0.819404 | 1.18E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene56304 | 0.818006 | 2.45E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene56304 | 0.80535 | 1.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56304.t1 | MTR_3g010350 | 88.162 | 321 | 34 | 2 | 1 | 321 | 247 | 563 | 0.0 | 564 |
| MS.gene56304.t1 | MTR_3g010350 | 92.793 | 111 | 8 | 0 | 288 | 398 | 635 | 745 | 9.54e-66 | 224 |
| MS.gene56304.t1 | MTR_3g010350 | 88.162 | 321 | 34 | 2 | 1 | 321 | 247 | 563 | 0.0 | 563 |
| MS.gene56304.t1 | MTR_3g010350 | 88.162 | 321 | 34 | 2 | 1 | 321 | 247 | 563 | 0.0 | 562 |
| MS.gene56304.t1 | MTR_3g010350 | 88.162 | 321 | 34 | 2 | 1 | 321 | 247 | 563 | 0.0 | 561 |
| MS.gene56304.t1 | MTR_4g059740 | 82.474 | 291 | 47 | 2 | 31 | 321 | 145 | 431 | 2.08e-164 | 473 |
| MS.gene56304.t1 | MTR_4g059740 | 61.538 | 78 | 24 | 2 | 288 | 365 | 503 | 574 | 5.30e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56304.t1 | AT1G73970 | 45.302 | 298 | 148 | 5 | 1 | 291 | 1 | 290 | 3.44e-67 | 223 |
| MS.gene56304.t1 | AT1G73970 | 55.046 | 109 | 38 | 2 | 291 | 398 | 394 | 492 | 1.14e-23 | 103 |
| MS.gene56304.t1 | AT1G73970 | 45.302 | 298 | 148 | 5 | 1 | 291 | 234 | 523 | 8.79e-67 | 223 |
| MS.gene56304.t1 | AT1G73970 | 45.302 | 298 | 148 | 5 | 1 | 291 | 234 | 523 | 1.30e-65 | 223 |
| MS.gene56304.t1 | AT1G73970 | 51.240 | 121 | 47 | 3 | 279 | 398 | 616 | 725 | 1.24e-23 | 103 |
| MS.gene56304.t1 | AT1G73970 | 45.302 | 298 | 148 | 5 | 1 | 291 | 234 | 523 | 1.42e-65 | 223 |
| MS.gene56304.t1 | AT1G73970 | 51.240 | 121 | 47 | 3 | 279 | 398 | 616 | 725 | 1.55e-23 | 103 |
Find 74 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTATTTCTTGAGAAAATT+TGG | 0.170840 | 3.1:+5471148 | None:intergenic |
| ATTAATTTCTTGCTTGGTTC+TGG | 0.194577 | 3.1:+5470093 | None:intergenic |
| CCTTTCGAGGGAATGGCTTC+TGG | 0.233281 | 3.1:-5470258 | MS.gene56304:CDS |
| TAGTCAGTGATTTGGTTTCT+AGG | 0.271356 | 3.1:-5471664 | MS.gene56304:CDS |
| TGGTTCTTTATTTGTTTGAT+TGG | 0.281714 | 3.1:-5471904 | MS.gene56304:CDS |
| TCCTCTTTGTTTGTTTGCCT+TGG | 0.291787 | 3.1:-5471542 | MS.gene56304:CDS |
| GCGTCGAATTTGATCAATTT+CGG | 0.309489 | 3.1:-5471878 | MS.gene56304:CDS |
| CACCTTCAATCCACCAGAAC+TGG | 0.311705 | 3.1:+5471454 | None:intergenic |
| ATATAGTGGAGAATCTTATA+TGG | 0.326678 | 3.1:-5471328 | MS.gene56304:CDS |
| TGTACGGTTGCCAGAGTATA+TGG | 0.329887 | 3.1:-5471069 | MS.gene56304:CDS |
| AAAGTGGCTATGCATCTTAA+AGG | 0.344054 | 3.1:-5471272 | MS.gene56304:CDS |
| TTTGAATTGTCACCCAGTTC+TGG | 0.378945 | 3.1:-5471467 | MS.gene56304:CDS |
| TTTGGAGAAAGTGGATGTTT+TGG | 0.384090 | 3.1:-5471852 | MS.gene56304:CDS |
| GGAAGCTTTAGTCAGTGATT+TGG | 0.391030 | 3.1:-5471672 | MS.gene56304:CDS |
| CGAAGTCTCATTGAAGATAC+TGG | 0.393924 | 3.1:-5471123 | MS.gene56304:CDS |
| CCCTCGAAAGGAGTAATATC+AGG | 0.394225 | 3.1:+5470270 | None:intergenic |
| TGAGGACTTCTGTGATTGTT+CGG | 0.402938 | 3.1:-5471697 | MS.gene56304:CDS |
| ATTCAAACACGGACTCATAA+AGG | 0.404590 | 3.1:+5471483 | None:intergenic |
| TATTGTCGCGATATTTACTT+TGG | 0.406073 | 3.1:-5471302 | MS.gene56304:CDS |
| TGGTAGAATTATTACCGATA+AGG | 0.416835 | 3.1:+5470367 | None:intergenic |
| TTACATACAAGTATCCTTAT+CGG | 0.420321 | 3.1:-5470381 | MS.gene56304:intron |
| GGAATGGCTTCTGGAGTTGT+AGG | 0.433895 | 3.1:-5470249 | MS.gene56304:CDS |
| GAGGACTTCTGTGATTGTTC+GGG | 0.435616 | 3.1:-5471696 | MS.gene56304:CDS |
| TCTAGACAATATCCTCTTCA+AGG | 0.441341 | 3.1:-5471414 | MS.gene56304:CDS |
| AAGTCTATTAATTTCTTGCT+TGG | 0.442426 | 3.1:+5470087 | None:intergenic |
| GATAGATATGCTTCGTCTAC+TGG | 0.443624 | 3.1:-5471746 | MS.gene56304:CDS |
| TTGCTTCAGTGTGTTACGTT+AGG | 0.445562 | 3.1:-5471596 | MS.gene56304:CDS |
| TCCTTGTTGATATACAAGTA+AGG | 0.454772 | 3.1:-5470047 | MS.gene56304:CDS |
| TATTACTCCTTTCGAGGGAA+TGG | 0.465186 | 3.1:-5470265 | MS.gene56304:CDS |
| GGAATGGTTTGAAAACGAAA+TGG | 0.465728 | 3.1:+5471562 | None:intergenic |
| CGAAGAAAATAAGAATATAG+TGG | 0.466638 | 3.1:-5471342 | MS.gene56304:CDS |
| AAAAGAAGATGAGTTGCTTA+CGG | 0.483804 | 3.1:-5471249 | MS.gene56304:CDS |
| TCCTGATATTACTCCTTTCG+AGG | 0.485069 | 3.1:-5470271 | MS.gene56304:CDS |
| ATAAGGATACTTGTATGTAA+TGG | 0.489233 | 3.1:+5470384 | None:intergenic |
| ATGGTCCAACATCTTCCTGC+TGG | 0.497914 | 3.1:-5470225 | MS.gene56304:CDS |
| AAGGAAGCAGGAGCTGTAAC+GGG | 0.508426 | 3.1:-5471395 | MS.gene56304:CDS |
| CAAGGAAGCAGGAGCTGTAA+CGG | 0.512123 | 3.1:-5471396 | MS.gene56304:CDS |
| TATACTCTGGCAACCGTACA+TGG | 0.514124 | 3.1:+5471072 | None:intergenic |
| TATAGTGGAGAATCTTATAT+GGG | 0.515982 | 3.1:-5471327 | MS.gene56304:CDS |
| GCGAAGCAACGGAAGTATCT+CGG | 0.516602 | 3.1:+5471505 | None:intergenic |
| AATATCCTCTTCAAGGAAGC+AGG | 0.517641 | 3.1:-5471407 | MS.gene56304:CDS |
| AATTGATAGAGTCTCATTGA+AGG | 0.521814 | 3.1:-5470420 | MS.gene56304:CDS |
| CAGCTCCTGCTTCCTTGAAG+AGG | 0.523439 | 3.1:+5471402 | None:intergenic |
| ACCCAGTTCTGGTGGATTGA+AGG | 0.525067 | 3.1:-5471456 | MS.gene56304:CDS |
| CAGTATCTTCAATGAGACTT+CGG | 0.528426 | 3.1:+5471124 | None:intergenic |
| AAAGTAGCAGGGCTTCCAGC+AGG | 0.532272 | 3.1:+5470210 | None:intergenic |
| GAATTGTCACCCAGTTCTGG+TGG | 0.532367 | 3.1:-5471464 | MS.gene56304:CDS |
| GACTCATAAAGGCGAAGCAA+CGG | 0.536788 | 3.1:+5471494 | None:intergenic |
| GTATATCAACAAGGAAAAGT+AGG | 0.538184 | 3.1:+5470055 | None:intergenic |
| CGAATGGTTTCCATATACTC+TGG | 0.542671 | 3.1:+5471059 | None:intergenic |
| ACTTGCAATTACCTTGCGAA+TGG | 0.551451 | 3.1:+5471043 | None:intergenic |
| ACATTAAGATGTAGTAACTC+AGG | 0.553118 | 3.1:-5471641 | MS.gene56304:CDS |
| GGCTTCCAGCAGGAAGATGT+TGG | 0.558970 | 3.1:+5470220 | None:intergenic |
| TTACTTTGGACACAGGAAAG+TGG | 0.565015 | 3.1:-5471288 | MS.gene56304:CDS |
| ACTGGTATCATTATCTTGTG+TGG | 0.574157 | 3.1:-5471105 | MS.gene56304:CDS |
| TGAAAGTAGATGCCCTCACT+AGG | 0.574756 | 3.1:-5471721 | MS.gene56304:CDS |
| CCAGAAGCCATTCCCTCGAA+AGG | 0.581203 | 3.1:+5470258 | None:intergenic |
| GACTTCTGTGATTGTTCGGG+TGG | 0.581590 | 3.1:-5471693 | MS.gene56304:CDS |
| GGCTTCTGGAGTTGTAGGAA+TGG | 0.585269 | 3.1:-5470244 | MS.gene56304:CDS |
| ACCTTCAATCCACCAGAACT+GGG | 0.592365 | 3.1:+5471455 | None:intergenic |
| CCTGATATTACTCCTTTCGA+GGG | 0.592855 | 3.1:-5470270 | MS.gene56304:CDS |
| GCGATATTTACTTTGGACAC+AGG | 0.594207 | 3.1:-5471295 | MS.gene56304:CDS |
| TAGATGCCCTCACTAGGATG+AGG | 0.596069 | 3.1:-5471715 | MS.gene56304:CDS |
| GGCAAACAAACAAAGAGGAA+TGG | 0.597301 | 3.1:+5471546 | None:intergenic |
| GATGCATGGAAGCAGTGGCA+AGG | 0.617201 | 3.1:-5470120 | MS.gene56304:CDS |
| ACCAAGGCAAACAAACAAAG+AGG | 0.620292 | 3.1:+5471541 | None:intergenic |
| TCGCTCATGAGACTGATGCA+TGG | 0.621340 | 3.1:-5470134 | MS.gene56304:CDS |
| AGAAGTCCTCATCCTAGTGA+GGG | 0.621954 | 3.1:+5471709 | None:intergenic |
| GTATATGGAAACCATTCGCA+AGG | 0.622807 | 3.1:-5471054 | MS.gene56304:intron |
| CAGAAGTCCTCATCCTAGTG+AGG | 0.625804 | 3.1:+5471708 | None:intergenic |
| CGGTTAACAATGACAAACCA+AGG | 0.648178 | 3.1:+5471525 | None:intergenic |
| AGACTGATGCATGGAAGCAG+TGG | 0.659175 | 3.1:-5470125 | MS.gene56304:CDS |
| GCCTTACTTGTATATCAACA+AGG | 0.675737 | 3.1:+5470046 | None:intergenic |
| ACTGGGTGACAATTCAAACA+CGG | 0.721322 | 3.1:+5471472 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATACCATATCATAATATA+GGG | - | chr3.1:5471649-5471668 | MS.gene56304:CDS | 15.0% |
| !! | TTTAAAAGAAACTAGATATA+TGG | - | chr3.1:5471424-5471443 | MS.gene56304:CDS | 15.0% |
| !! | TTTATACCATATCATAATAT+AGG | - | chr3.1:5471648-5471667 | MS.gene56304:CDS | 15.0% |
| !!! | AATACTACAGATATAAATTT+TGG | + | chr3.1:5471301-5471320 | None:intergenic | 15.0% |
| !!! | TATCTAGTTTCTTTTAAATA+AGG | + | chr3.1:5471422-5471441 | None:intergenic | 15.0% |
| !! | TTGTATTTCTTGAGAAAATT+TGG | + | chr3.1:5470801-5470820 | None:intergenic | 20.0% |
| !!! | AATATGTACTTAGTTGATAT+AGG | + | chr3.1:5471230-5471249 | None:intergenic | 20.0% |
| ! | AAGTCTATTAATTTCTTGCT+TGG | + | chr3.1:5471862-5471881 | None:intergenic | 25.0% |
| ! | AATAATTCTACCAAATACCT+TGG | - | chr3.1:5471589-5471608 | MS.gene56304:CDS | 25.0% |
| ! | ATAAGGATACTTGTATGTAA+TGG | + | chr3.1:5471565-5471584 | None:intergenic | 25.0% |
| ! | CCTTCGTTAAATAAAATTTG+GGG | - | chr3.1:5471358-5471377 | MS.gene56304:CDS | 25.0% |
| ! | CGAAGAAAATAAGAATATAG+TGG | - | chr3.1:5470604-5470623 | MS.gene56304:intron | 25.0% |
| ! | CTTGAAATGAAACTTATTTG+TGG | + | chr3.1:5471271-5471290 | None:intergenic | 25.0% |
| ! | GATATCCCTATATTATGATA+TGG | + | chr3.1:5471657-5471676 | None:intergenic | 25.0% |
| ! | GCCTTCGTTAAATAAAATTT+GGG | - | chr3.1:5471357-5471376 | MS.gene56304:CDS | 25.0% |
| ! | TTACATACAAGTATCCTTAT+CGG | - | chr3.1:5471565-5471584 | MS.gene56304:CDS | 25.0% |
| !! | AGAAACATTTGAGAGTTTTA+AGG | - | chr3.1:5470121-5470140 | MS.gene56304:CDS | 25.0% |
| !! | ATATAGTGGAGAATCTTATA+TGG | - | chr3.1:5470618-5470637 | MS.gene56304:intron | 25.0% |
| !! | ATATTAAAGACCAAGGTATT+TGG | + | chr3.1:5471602-5471621 | None:intergenic | 25.0% |
| !! | TAAGTTTCATTTCAAGCTTT+TGG | - | chr3.1:5471275-5471294 | MS.gene56304:CDS | 25.0% |
| !! | TATAGTGGAGAATCTTATAT+GGG | - | chr3.1:5470619-5470638 | MS.gene56304:intron | 25.0% |
| !! | TGGTTCTTTATTTGTTTGAT+TGG | - | chr3.1:5470042-5470061 | MS.gene56304:CDS | 25.0% |
| !! | TTTGATCAATTTCGGATTTT+TGG | - | chr3.1:5470076-5470095 | MS.gene56304:CDS | 25.0% |
| !!! | TTCACTGCATTTATTTCTAT+GGG | - | chr3.1:5471488-5471507 | MS.gene56304:CDS | 25.0% |
| AAAAGAAGATGAGTTGCTTA+CGG | - | chr3.1:5470697-5470716 | MS.gene56304:intron | 30.0% | |
| AATAAAATTTGGGGATTCTC+TGG | - | chr3.1:5471367-5471386 | MS.gene56304:CDS | 30.0% | |
| AATTGATAGAGTCTCATTGA+AGG | - | chr3.1:5471526-5471545 | MS.gene56304:CDS | 30.0% | |
| ACATTAAGATGTAGTAACTC+AGG | - | chr3.1:5470305-5470324 | MS.gene56304:intron | 30.0% | |
| AGATATATGGAACATCCAAA+TGG | - | chr3.1:5471437-5471456 | MS.gene56304:CDS | 30.0% | |
| ATAGGATACAAGAACATAGT+TGG | + | chr3.1:5471212-5471231 | None:intergenic | 30.0% | |
| ATTAATTTCTTGCTTGGTTC+TGG | + | chr3.1:5471856-5471875 | None:intergenic | 30.0% | |
| GCAATTGAATAAATCATACC+TGG | + | chr3.1:5471001-5471020 | None:intergenic | 30.0% | |
| GGCCTTCGTTAAATAAAATT+TGG | - | chr3.1:5471356-5471375 | MS.gene56304:CDS | 30.0% | |
| GTATATCAACAAGGAAAAGT+AGG | + | chr3.1:5471894-5471913 | None:intergenic | 30.0% | |
| TATTGTCGCGATATTTACTT+TGG | - | chr3.1:5470644-5470663 | MS.gene56304:intron | 30.0% | |
| TCCTTGTTGATATACAAGTA+AGG | - | chr3.1:5471899-5471918 | MS.gene56304:CDS | 30.0% | |
| TGGTAGAATTATTACCGATA+AGG | + | chr3.1:5471582-5471601 | None:intergenic | 30.0% | |
| ! | ACCAGAAAACCAAATACTTT+TGG | - | chr3.1:5471084-5471103 | MS.gene56304:CDS | 30.0% |
| !! | CCCCAAATTTTATTTAACGA+AGG | + | chr3.1:5471361-5471380 | None:intergenic | 30.0% |
| !! | GTTCACTGCATTTATTTCTA+TGG | - | chr3.1:5471487-5471506 | MS.gene56304:CDS | 30.0% |
| !! | TCACTGCATTTATTTCTATG+GGG | - | chr3.1:5471489-5471508 | MS.gene56304:CDS | 30.0% |
| !!! | ACCAAAAGTATTTGGTTTTC+TGG | + | chr3.1:5471088-5471107 | None:intergenic | 30.0% |
| AAAGTGGCTATGCATCTTAA+AGG | - | chr3.1:5470674-5470693 | MS.gene56304:intron | 35.0% | |
| ACTGGTATCATTATCTTGTG+TGG | - | chr3.1:5470841-5470860 | MS.gene56304:intron | 35.0% | |
| ATTCAAACACGGACTCATAA+AGG | + | chr3.1:5470466-5470485 | None:intergenic | 35.0% | |
| CAGTATCTTCAATGAGACTT+CGG | + | chr3.1:5470825-5470844 | None:intergenic | 35.0% | |
| CTCGTAGGTAAAACAAAACA+CGG | + | chr3.1:5471133-5471152 | None:intergenic | 35.0% | |
| CTCTCACATATTAAAGACCA+AGG | + | chr3.1:5471609-5471628 | None:intergenic | 35.0% | |
| GAATGCAGTAAAAAGTAGCA+GGG | + | chr3.1:5471750-5471769 | None:intergenic | 35.0% | |
| GCCTTACTTGTATATCAACA+AGG | + | chr3.1:5471903-5471922 | None:intergenic | 35.0% | |
| GCGTCGAATTTGATCAATTT+CGG | - | chr3.1:5470068-5470087 | MS.gene56304:CDS | 35.0% | |
| GGAATGGTTTGAAAACGAAA+TGG | + | chr3.1:5470387-5470406 | None:intergenic | 35.0% | |
| GTGAATTGCTCTTTGTTCTT+TGG | - | chr3.1:5471029-5471048 | MS.gene56304:intron | 35.0% | |
| TACGGATTTCGAAAAAATCG+CGG | - | chr3.1:5470715-5470734 | MS.gene56304:intron | 35.0% | |
| TCGTAGGTAAAACAAAACAC+GGG | + | chr3.1:5471132-5471151 | None:intergenic | 35.0% | |
| TCTAGACAATATCCTCTTCA+AGG | - | chr3.1:5470532-5470551 | MS.gene56304:intron | 35.0% | |
| TGAATGCAGTAAAAAGTAGC+AGG | + | chr3.1:5471751-5471770 | None:intergenic | 35.0% | |
| ! | AACCAAATACTTTTGGTCCA+AGG | - | chr3.1:5471091-5471110 | MS.gene56304:CDS | 35.0% |
| ! | TGGAATATTTTCGCCATGTA+CGG | - | chr3.1:5470861-5470880 | MS.gene56304:intron | 35.0% |
| ! | TTTGGAGAAAGTGGATGTTT+TGG | - | chr3.1:5470094-5470113 | MS.gene56304:CDS | 35.0% |
| ! | TTTTGAGCACTAGATACACT+AGG | - | chr3.1:5471335-5471354 | MS.gene56304:CDS | 35.0% |
| !! | ATCCTTGGACCAAAAGTATT+TGG | + | chr3.1:5471096-5471115 | None:intergenic | 35.0% |
| !! | TAGTCAGTGATTTGGTTTCT+AGG | - | chr3.1:5470282-5470301 | MS.gene56304:intron | 35.0% |
| !! | TGCATTTATTTCTATGGGGA+AGG | - | chr3.1:5471493-5471512 | MS.gene56304:CDS | 35.0% |
| !! | TTTCGGATTTTTGGAGAAAG+TGG | - | chr3.1:5470085-5470104 | MS.gene56304:CDS | 35.0% |
| !!! | CATTTGCTGTTTTCATGTCT+GGG | - | chr3.1:5470156-5470175 | MS.gene56304:CDS | 35.0% |
| !!! | TCATTTGCTGTTTTCATGTC+TGG | - | chr3.1:5470155-5470174 | MS.gene56304:CDS | 35.0% |
| AATATCCTCTTCAAGGAAGC+AGG | - | chr3.1:5470539-5470558 | MS.gene56304:intron | 40.0% | |
| ACCAAGGCAAACAAACAAAG+AGG | + | chr3.1:5470408-5470427 | None:intergenic | 40.0% | |
| ACTGGGTGACAATTCAAACA+CGG | + | chr3.1:5470477-5470496 | None:intergenic | 40.0% | |
| ACTTGCAATTACCTTGCGAA+TGG | + | chr3.1:5470906-5470925 | None:intergenic | 40.0% | |
| ACTTTGATTGAGTGTTTGCC+CGG | - | chr3.1:5471161-5471180 | MS.gene56304:CDS | 40.0% | |
| CCTGATATTACTCCTTTCGA+GGG | - | chr3.1:5471676-5471695 | MS.gene56304:CDS | 40.0% | |
| CGAAGTCTCATTGAAGATAC+TGG | - | chr3.1:5470823-5470842 | MS.gene56304:intron | 40.0% | |
| CGAATGGTTTCCATATACTC+TGG | + | chr3.1:5470890-5470909 | None:intergenic | 40.0% | |
| CGGTTAACAATGACAAACCA+AGG | + | chr3.1:5470424-5470443 | None:intergenic | 40.0% | |
| CTTATGGCGACTTGACAAAT+GGG | - | chr3.1:5470975-5470994 | MS.gene56304:intron | 40.0% | |
| GATAGATATGCTTCGTCTAC+TGG | - | chr3.1:5470200-5470219 | MS.gene56304:CDS | 40.0% | |
| GCGATATTTACTTTGGACAC+AGG | - | chr3.1:5470651-5470670 | MS.gene56304:intron | 40.0% | |
| GGCAAACAAACAAAGAGGAA+TGG | + | chr3.1:5470403-5470422 | None:intergenic | 40.0% | |
| GGCAAACACTCAATCAAAGT+TGG | + | chr3.1:5471161-5471180 | None:intergenic | 40.0% | |
| GTATATGGAAACCATTCGCA+AGG | - | chr3.1:5470892-5470911 | MS.gene56304:intron | 40.0% | |
| GTGAACTCCATACCATCTTA+TGG | - | chr3.1:5470959-5470978 | MS.gene56304:intron | 40.0% | |
| TATTACTCCTTTCGAGGGAA+TGG | - | chr3.1:5471681-5471700 | MS.gene56304:CDS | 40.0% | |
| TCAAAGTTGGAATGACTCGT+AGG | + | chr3.1:5471148-5471167 | None:intergenic | 40.0% | |
| TCCTGATATTACTCCTTTCG+AGG | - | chr3.1:5471675-5471694 | MS.gene56304:CDS | 40.0% | |
| TCTTATGGCGACTTGACAAA+TGG | - | chr3.1:5470974-5470993 | MS.gene56304:intron | 40.0% | |
| TGAGGACTTCTGTGATTGTT+CGG | - | chr3.1:5470249-5470268 | MS.gene56304:CDS | 40.0% | |
| TTACTTTGGACACAGGAAAG+TGG | - | chr3.1:5470658-5470677 | MS.gene56304:intron | 40.0% | |
| TTGCTTCAGTGTGTTACGTT+AGG | - | chr3.1:5470350-5470369 | MS.gene56304:intron | 40.0% | |
| TTTGAATTGTCACCCAGTTC+TGG | - | chr3.1:5470479-5470498 | MS.gene56304:intron | 40.0% | |
| TTTGTCAAGTCGCCATAAGA+TGG | + | chr3.1:5470974-5470993 | None:intergenic | 40.0% | |
| ! | GGAAGCTTTAGTCAGTGATT+TGG | - | chr3.1:5470274-5470293 | MS.gene56304:CDS | 40.0% |
| ! | TCCTCTTTGTTTGTTTGCCT+TGG | - | chr3.1:5470404-5470423 | MS.gene56304:CDS | 40.0% |
| ACCTTCAATCCACCAGAACT+GGG | + | chr3.1:5470494-5470513 | None:intergenic | 45.0% | |
| AGAAGTCCTCATCCTAGTGA+GGG | + | chr3.1:5470240-5470259 | None:intergenic | 45.0% | |
| CAAGTCGCCATAAGATGGTA+TGG | + | chr3.1:5470969-5470988 | None:intergenic | 45.0% | |
| CCCTCGAAAGGAGTAATATC+AGG | + | chr3.1:5471679-5471698 | None:intergenic | 45.0% | |
| CTACCATGTCTCCGAATACA+GGG | + | chr3.1:5471187-5471206 | None:intergenic | 45.0% | |
| GACTCATAAAGGCGAAGCAA+CGG | + | chr3.1:5470455-5470474 | None:intergenic | 45.0% | |
| GAGGACTTCTGTGATTGTTC+GGG | - | chr3.1:5470250-5470269 | MS.gene56304:CDS | 45.0% | |
| TATACTCTGGCAACCGTACA+TGG | + | chr3.1:5470877-5470896 | None:intergenic | 45.0% | |
| TGAAAGTAGATGCCCTCACT+AGG | - | chr3.1:5470225-5470244 | MS.gene56304:CDS | 45.0% | |
| TGCAGTGAACACAGAATGAG+AGG | + | chr3.1:5471477-5471496 | None:intergenic | 45.0% | |
| TGTACGGTTGCCAGAGTATA+TGG | - | chr3.1:5470877-5470896 | MS.gene56304:intron | 45.0% | |
| !! | GCTGTTTTCATGTCTGGGAT+TGG | - | chr3.1:5470161-5470180 | MS.gene56304:CDS | 45.0% |
| !!! | GCTCGAGCTACTTTTCCATT+TGG | + | chr3.1:5471455-5471474 | None:intergenic | 45.0% |
| AAGGAAGCAGGAGCTGTAAC+GGG | - | chr3.1:5470551-5470570 | MS.gene56304:intron | 50.0% | |
| AGACTGATGCATGGAAGCAG+TGG | - | chr3.1:5471821-5471840 | MS.gene56304:CDS | 50.0% | |
| ATGGTCCAACATCTTCCTGC+TGG | - | chr3.1:5471721-5471740 | MS.gene56304:CDS | 50.0% | |
| CAAGGAAGCAGGAGCTGTAA+CGG | - | chr3.1:5470550-5470569 | MS.gene56304:intron | 50.0% | |
| CACCTTCAATCCACCAGAAC+TGG | + | chr3.1:5470495-5470514 | None:intergenic | 50.0% | |
| CAGAAGTCCTCATCCTAGTG+AGG | + | chr3.1:5470241-5470260 | None:intergenic | 50.0% | |
| GACTTCTGTGATTGTTCGGG+TGG | - | chr3.1:5470253-5470272 | MS.gene56304:CDS | 50.0% | |
| GCTACCATGTCTCCGAATAC+AGG | + | chr3.1:5471188-5471207 | None:intergenic | 50.0% | |
| GGCAGTTTGCACTTCATCCT+TGG | + | chr3.1:5471111-5471130 | None:intergenic | 50.0% | |
| TAGATGCCCTCACTAGGATG+AGG | - | chr3.1:5470231-5470250 | MS.gene56304:CDS | 50.0% | |
| TCGCTCATGAGACTGATGCA+TGG | - | chr3.1:5471812-5471831 | MS.gene56304:CDS | 50.0% | |
| ! | GAATTGTCACCCAGTTCTGG+TGG | - | chr3.1:5470482-5470501 | MS.gene56304:intron | 50.0% |
| !! | ACCCAGTTCTGGTGGATTGA+AGG | - | chr3.1:5470490-5470509 | MS.gene56304:intron | 50.0% |
| !! | CGCGGATTCTGCTTTTCTCA+TGG | - | chr3.1:5470733-5470752 | MS.gene56304:intron | 50.0% |
| !! | GCGAAGCAACGGAAGTATCT+CGG | + | chr3.1:5470444-5470463 | None:intergenic | 50.0% |
| !! | GGAATGGCTTCTGGAGTTGT+AGG | - | chr3.1:5471697-5471716 | MS.gene56304:CDS | 50.0% |
| !! | GGCTTCTGGAGTTGTAGGAA+TGG | - | chr3.1:5471702-5471721 | MS.gene56304:CDS | 50.0% |
| AAAGTAGCAGGGCTTCCAGC+AGG | + | chr3.1:5471739-5471758 | None:intergenic | 55.0% | |
| ATGTCTCCGAATACAGGGCC+GGG | + | chr3.1:5471182-5471201 | None:intergenic | 55.0% | |
| CAGCTCCTGCTTCCTTGAAG+AGG | + | chr3.1:5470547-5470566 | None:intergenic | 55.0% | |
| CATGTCTCCGAATACAGGGC+CGG | + | chr3.1:5471183-5471202 | None:intergenic | 55.0% | |
| CCAGAAGCCATTCCCTCGAA+AGG | + | chr3.1:5471691-5471710 | None:intergenic | 55.0% | |
| CCTTTCGAGGGAATGGCTTC+TGG | - | chr3.1:5471688-5471707 | MS.gene56304:CDS | 55.0% | |
| GATGCATGGAAGCAGTGGCA+AGG | - | chr3.1:5471826-5471845 | MS.gene56304:CDS | 55.0% | |
| GGCTTCCAGCAGGAAGATGT+TGG | + | chr3.1:5471729-5471748 | None:intergenic | 55.0% | |
| TGTTTGCCCGGCCCTGTATT+CGG | - | chr3.1:5471173-5471192 | MS.gene56304:CDS | 55.0% | |
| CGGCCCTGTATTCGGAGACA+TGG | - | chr3.1:5471181-5471200 | MS.gene56304:CDS | 60.0% | |
| GGCGACTTGACAAATGGGCC+AGG | - | chr3.1:5470980-5470999 | MS.gene56304:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 5470041 | 5471927 | 5470041 | ID=MS.gene56304 |
| chr3.1 | mRNA | 5470041 | 5471927 | 5470041 | ID=MS.gene56304.t1;Parent=MS.gene56304 |
| chr3.1 | exon | 5471055 | 5471927 | 5471055 | ID=MS.gene56304.t1.exon1;Parent=MS.gene56304.t1 |
| chr3.1 | CDS | 5471055 | 5471927 | 5471055 | ID=cds.MS.gene56304.t1;Parent=MS.gene56304.t1 |
| chr3.1 | exon | 5470382 | 5470453 | 5470382 | ID=MS.gene56304.t1.exon2;Parent=MS.gene56304.t1 |
| chr3.1 | CDS | 5470382 | 5470453 | 5470382 | ID=cds.MS.gene56304.t1;Parent=MS.gene56304.t1 |
| chr3.1 | exon | 5470041 | 5470298 | 5470041 | ID=MS.gene56304.t1.exon3;Parent=MS.gene56304.t1 |
| chr3.1 | CDS | 5470041 | 5470298 | 5470041 | ID=cds.MS.gene56304.t1;Parent=MS.gene56304.t1 |
| Gene Sequence |
| Protein sequence |
