Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61642.t1 | GAU19965.1 | 67.9 | 224 | 29 | 3 | 1 | 224 | 117 | 297 | 6.30E-66 | 260.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61642.t1 | Q9SJF1 | 50.2 | 221 | 68 | 3 | 1 | 219 | 117 | 297 | 3.1e-45 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61642.t1 | A0A2Z6MUW3 | 67.9 | 224 | 29 | 3 | 1 | 224 | 117 | 297 | 4.5e-66 | 260.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene61642 | 0.866943 | 1.97E-65 | -1.69E-46 |
| MS.gene049419 | MS.gene61642 | -0.845174 | 4.79E-59 | -1.69E-46 |
| MS.gene049499 | MS.gene61642 | 0.802143 | 6.45E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene61642 | 0.804243 | 2.37E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene61642 | 0.854101 | 1.54E-61 | -1.69E-46 |
| MS.gene050271 | MS.gene61642 | 0.830016 | 3.72E-55 | -1.69E-46 |
| MS.gene050508 | MS.gene61642 | 0.821029 | 5.02E-53 | -1.69E-46 |
| MS.gene050571 | MS.gene61642 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene61642 | 0.823767 | 1.16E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene61642 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene051363 | MS.gene61642 | 0.805533 | 1.27E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene61642 | 0.822391 | 2.43E-53 | -1.69E-46 |
| MS.gene051597 | MS.gene61642 | 0.838657 | 2.53E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene61642 | 0.807134 | 5.86E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene61642 | 0.808147 | 3.57E-50 | -1.69E-46 |
| MS.gene052500 | MS.gene61642 | 0.814768 | 1.30E-51 | -1.69E-46 |
| MS.gene052502 | MS.gene61642 | 0.815485 | 9.03E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene61642 | 0.809879 | 1.52E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene61642 | 0.815118 | 1.09E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene61642 | 0.859062 | 5.36E-63 | -1.69E-46 |
| MS.gene053058 | MS.gene61642 | 0.819404 | 1.18E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene61642 | 0.813081 | 3.07E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene61642 | 0.825089 | 5.67E-54 | -1.69E-46 |
| MS.gene053188 | MS.gene61642 | 0.808281 | 3.35E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene61642 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene053298 | MS.gene61642 | 0.811275 | 7.60E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene61642 | 0.816649 | 4.96E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene61642 | 0.860576 | 1.88E-63 | -1.69E-46 |
| MS.gene054222 | MS.gene61642 | 0.815374 | 9.55E-52 | -1.69E-46 |
| MS.gene054328 | MS.gene61642 | 0.816722 | 4.78E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene61642 | 0.833269 | 5.88E-56 | -1.69E-46 |
| MS.gene054657 | MS.gene61642 | 0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene61642 | 0.829707 | 4.43E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene61642 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene61642 | 0.833207 | 6.09E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene61642 | 0.836071 | 1.16E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene61642 | 0.846105 | 2.68E-59 | -1.69E-46 |
| MS.gene05689 | MS.gene61642 | 0.831193 | 1.92E-55 | -1.69E-46 |
| MS.gene056973 | MS.gene61642 | 0.806879 | 6.64E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene61642 | 0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene61642 | 0.818417 | 1.98E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene61642 | 0.813701 | 2.24E-51 | -1.69E-46 |
| MS.gene058126 | MS.gene61642 | 0.837025 | 6.63E-57 | -1.69E-46 |
| MS.gene058223 | MS.gene61642 | -0.83504 | 2.11E-56 | -1.69E-46 |
| MS.gene058279 | MS.gene61642 | 0.80479 | 1.82E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene61642 | 0.804595 | 2.00E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene61642 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene61642 | 0.822135 | 2.78E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene61642 | 0.813532 | 2.44E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene61642 | -0.806062 | 9.87E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene61642 | 0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene61642 | 0.801869 | 7.35E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene61642 | 0.813922 | 2.00E-51 | -1.69E-46 |
| MS.gene060830 | MS.gene61642 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene61642 | 0.813391 | 2.62E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene61642 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene61642 | 0.815564 | 8.67E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene61642 | 0.81849 | 1.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61642.t1 | MTR_4g050490 | 70.142 | 211 | 23 | 2 | 1 | 211 | 118 | 288 | 5.05e-90 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61642.t1 | AT1G08410 | 50.226 | 221 | 68 | 3 | 1 | 219 | 117 | 297 | 2.18e-59 | 197 |
| MS.gene61642.t1 | AT2G27200 | 48.661 | 224 | 73 | 3 | 1 | 222 | 117 | 300 | 2.77e-58 | 193 |
Find 44 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAAGGAAAAGAATTTC+TGG | 0.292976 | 4.1:-47298523 | MS.gene61642:intron |
| CTTCCATATATCTTCGTGTC+TGG | 0.316983 | 4.1:+47297495 | None:intergenic |
| AACCCAGACACGAAGATATA+TGG | 0.324106 | 4.1:-47297498 | MS.gene61642:CDS |
| TAAAGCTGCTACCGCAGTTT+TGG | 0.336125 | 4.1:-47297571 | MS.gene61642:CDS |
| ATGGTATTCTCTTTATCTTC+TGG | 0.358836 | 4.1:-47297599 | MS.gene61642:CDS |
| TAAGAAATGTTGTTGTTCAT+TGG | 0.372356 | 4.1:+47299620 | None:intergenic |
| GGTTGTTGAGCGCAGTGATT+TGG | 0.411786 | 4.1:-47299316 | MS.gene61642:intron |
| GTAGATATGAGAAGAAGTTC+AGG | 0.418084 | 4.1:-47297429 | MS.gene61642:CDS |
| CTATCGCTTCTGCCTCTGAT+TGG | 0.419536 | 4.1:+47297451 | None:intergenic |
| TTCCATATATCTTCGTGTCT+GGG | 0.450384 | 4.1:+47297496 | None:intergenic |
| TTGATATCTGGAGACAGCTC+TGG | 0.465704 | 4.1:-47299341 | MS.gene61642:CDS |
| TAGTTTCAAGCTCATGATGA+AGG | 0.470296 | 4.1:+47298590 | None:intergenic |
| CATCATGAGCTTGAAACTAA+AGG | 0.475363 | 4.1:-47298586 | MS.gene61642:CDS |
| TTCTGCCTCTGATTGGAGGC+GGG | 0.477218 | 4.1:+47297458 | None:intergenic |
| CTTCTGCCTCTGATTGGAGG+CGG | 0.485826 | 4.1:+47297457 | None:intergenic |
| GGACTCTATTAGCGACAACT+TGG | 0.487884 | 4.1:+47297102 | None:intergenic |
| TTGGACACACTCCCGATGTT+GGG | 0.490498 | 4.1:+47297121 | None:intergenic |
| ATTGTCGTCTGAGGATTTAG+AGG | 0.499374 | 4.1:+47297404 | None:intergenic |
| TGATAGGATGACCCAACATC+GGG | 0.499921 | 4.1:-47297132 | MS.gene61642:intron |
| CCTTGCTAAGCTGCGACGCC+AGG | 0.500360 | 4.1:+47299596 | None:intergenic |
| TATCCAAACCTGACAGAAGC+AGG | 0.502220 | 4.1:+47297751 | None:intergenic |
| TCGCTTCTGCCTCTGATTGG+AGG | 0.511592 | 4.1:+47297454 | None:intergenic |
| CTTGGACACACTCCCGATGT+TGG | 0.511866 | 4.1:+47297120 | None:intergenic |
| AACAACAACATTTCTTAACC+TGG | 0.514180 | 4.1:-47299614 | MS.gene61642:CDS |
| TGGTGATGCTTTCAGACTTG+AGG | 0.522957 | 4.1:-47299402 | MS.gene61642:intron |
| AAACATCATACCTCAAGGTC+AGG | 0.523791 | 4.1:+47298183 | None:intergenic |
| TGTTCCCCTGCAGAGAGAAG+TGG | 0.531572 | 4.1:-47297641 | MS.gene61642:intron |
| TTCGGAACAGGCTTATGCAA+AGG | 0.550017 | 4.1:-47297827 | MS.gene61642:intron |
| GCAGAATACTTCCGTGCTCA+TGG | 0.555358 | 4.1:-47297618 | MS.gene61642:CDS |
| TTTATCACAGGCTGATAACA+TGG | 0.568230 | 4.1:-47297532 | MS.gene61642:CDS |
| CTATCGCTGTCCTGACCTTG+AGG | 0.575909 | 4.1:-47298193 | MS.gene61642:intron |
| ATATCTGGAGACAGCTCTGG+AGG | 0.583113 | 4.1:-47299338 | MS.gene61642:CDS |
| GTTCCCCTGCAGAGAGAAGT+GGG | 0.583589 | 4.1:-47297640 | MS.gene61642:intron |
| CTTAGCCCGCCTCCAATCAG+AGG | 0.603367 | 4.1:-47297463 | MS.gene61642:CDS |
| TTGATAGGATGACCCAACAT+CGG | 0.606223 | 4.1:-47297133 | MS.gene61642:intron |
| AACAGAAGCATTGTCGTCTG+AGG | 0.612652 | 4.1:+47297395 | None:intergenic |
| TAAAGAGAATACCATGAGCA+CGG | 0.615254 | 4.1:+47297607 | None:intergenic |
| CCTGGCGTCGCAGCTTAGCA+AGG | 0.622431 | 4.1:-47299596 | MS.gene61642:intron |
| GGAACAGGCTTATGCAAAGG+AGG | 0.630649 | 4.1:-47297824 | MS.gene61642:intron |
| CAGACACGAAGATATATGGA+AGG | 0.653054 | 4.1:-47297494 | MS.gene61642:CDS |
| TCAGGACAGCGATAGAACAA+TGG | 0.654420 | 4.1:+47298201 | None:intergenic |
| TATCTGGAGACAGCTCTGGA+GGG | 0.665825 | 4.1:-47299337 | MS.gene61642:CDS |
| ATTGGCATGAAGCTCGTCAG+CGG | 0.665937 | 4.1:+47299638 | None:intergenic |
| AGACACGAAGATATATGGAA+GGG | 0.689139 | 4.1:-47297493 | MS.gene61642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTGAATGTTAT+TGG | + | chr4.1:47298280-47298299 | None:intergenic | 10.0% |
| !! | AAAAAAAATTGAATGTTATT+GGG | + | chr4.1:47298279-47298298 | None:intergenic | 10.0% |
| !! | AAAAAAATTGAATGTTATTG+GGG | + | chr4.1:47298278-47298297 | None:intergenic | 15.0% |
| !! | AGATAAAAATTTACACATTA+CGG | + | chr4.1:47298428-47298447 | None:intergenic | 15.0% |
| !! | CTTAATAAATAATAAATGCT+TGG | - | chr4.1:47298748-47298767 | MS.gene61642:intron | 15.0% |
| !! | TCAATATCAAAATTATAACA+TGG | + | chr4.1:47297325-47297344 | None:intergenic | 15.0% |
| !! | TCTTAAAAATGTAAATGAAT+AGG | + | chr4.1:47298142-47298161 | None:intergenic | 15.0% |
| !! | TTATTTATTAAGAATAACAG+AGG | + | chr4.1:47298740-47298759 | None:intergenic | 15.0% |
| !!! | TGTTATAATTTTGATATTGA+TGG | - | chr4.1:47297325-47297344 | MS.gene61642:intron | 15.0% |
| !! | CAAATGCTTTCATAAATTAT+AGG | + | chr4.1:47298319-47298338 | None:intergenic | 20.0% |
| !! | GAATTGATATAAATATTGCA+AGG | + | chr4.1:47297510-47297529 | None:intergenic | 20.0% |
| !! | TCCTCAAAATCTATATAAAA+AGG | + | chr4.1:47297616-47297635 | None:intergenic | 20.0% |
| !! | TGTTACATATATAATCATGT+CGG | - | chr4.1:47297650-47297669 | MS.gene61642:intron | 20.0% |
| !!! | ATATCAAGATTTTTCTCAAA+TGG | + | chr4.1:47297398-47297417 | None:intergenic | 20.0% |
| !!! | CTATAATTTATGAAAGCATT+TGG | - | chr4.1:47298317-47298336 | MS.gene61642:intron | 20.0% |
| !!! | TAATTTTGATATTGATGGTT+TGG | - | chr4.1:47297330-47297349 | MS.gene61642:intron | 20.0% |
| !!! | TATATGATAATGTGACTTTT+TGG | + | chr4.1:47298713-47298732 | None:intergenic | 20.0% |
| !!! | TCCTTTTTATATAGATTTTG+AGG | - | chr4.1:47297612-47297631 | MS.gene61642:CDS | 20.0% |
| !!! | TTTTATATAGATTTTGAGGA+TGG | - | chr4.1:47297616-47297635 | MS.gene61642:CDS | 20.0% |
| ! | AAACAAAGGAAAAGAATTTC+TGG | - | chr4.1:47298229-47298248 | MS.gene61642:CDS | 25.0% |
| ! | AAATGTGCAAAAACAAACAA+AGG | - | chr4.1:47298215-47298234 | MS.gene61642:CDS | 25.0% |
| ! | AACCATCTTTAATAGAATAG+CGG | + | chr4.1:47297971-47297990 | None:intergenic | 25.0% |
| ! | AATTACAGACACATGATATA+TGG | + | chr4.1:47298806-47298825 | None:intergenic | 25.0% |
| ! | AGGTTTGGATATCTATATTT+AGG | - | chr4.1:47299013-47299032 | MS.gene61642:intron | 25.0% |
| ! | ATATATAATCATGTCGGATA+TGG | - | chr4.1:47297656-47297675 | MS.gene61642:intron | 25.0% |
| ! | GAAACACAGGATATATAATA+AGG | + | chr4.1:47299088-47299107 | None:intergenic | 25.0% |
| ! | GAAACGAATAGTAGAAAATA+TGG | + | chr4.1:47297188-47297207 | None:intergenic | 25.0% |
| ! | TTGAGAAAAATCTTGATATC+TGG | - | chr4.1:47297399-47297418 | MS.gene61642:CDS | 25.0% |
| !! | ACAACATTACAAAAAGCATA+TGG | + | chr4.1:47297588-47297607 | None:intergenic | 25.0% |
| !! | TAAGAAATGTTGTTGTTCAT+TGG | + | chr4.1:47297135-47297154 | None:intergenic | 25.0% |
| !!! | ACATCAATATTTTTTGCACT+TGG | + | chr4.1:47298472-47298491 | None:intergenic | 25.0% |
| !!! | ATTTGTTGGTGTTAAACATT+TGG | - | chr4.1:47297732-47297751 | MS.gene61642:intron | 25.0% |
| !!! | TATGAAAGCATTTGGATAAT+TGG | - | chr4.1:47298325-47298344 | MS.gene61642:intron | 25.0% |
| !!! | TGACCTTTTTTGCTTTTATT+CGG | - | chr4.1:47298907-47298926 | MS.gene61642:intron | 25.0% |
| AAAATTGAATGTTATTGGGG+AGG | + | chr4.1:47298275-47298294 | None:intergenic | 30.0% | |
| AAATTGAATGTTATTGGGGA+GGG | + | chr4.1:47298274-47298293 | None:intergenic | 30.0% | |
| AACAACAACATTTCTTAACC+TGG | - | chr4.1:47297138-47297157 | MS.gene61642:intron | 30.0% | |
| AACAAGCAAAACTAAAGACT+AGG | + | chr4.1:47298097-47298116 | None:intergenic | 30.0% | |
| AGACAATGGTTTCTGTTATA+TGG | - | chr4.1:47297271-47297290 | MS.gene61642:intron | 30.0% | |
| AGATATGAGATGATTACTTG+TGG | - | chr4.1:47299585-47299604 | MS.gene61642:intron | 30.0% | |
| ATATGAGATGATTACTTGTG+GGG | - | chr4.1:47299587-47299606 | MS.gene61642:intron | 30.0% | |
| ATGGTATTCTCTTTATCTTC+TGG | - | chr4.1:47299153-47299172 | MS.gene61642:intron | 30.0% | |
| CAAGTACAAAACAACAACTA+AGG | + | chr4.1:47298394-47298413 | None:intergenic | 30.0% | |
| CTGATATGTTCTTGTAATGT+TGG | - | chr4.1:47297542-47297561 | MS.gene61642:CDS | 30.0% | |
| GAAAGATGGAAAAACTAATC+AGG | + | chr4.1:47299556-47299575 | None:intergenic | 30.0% | |
| GAAGTCACATTAACATAAGT+GGG | + | chr4.1:47297684-47297703 | None:intergenic | 30.0% | |
| GATATGAGATGATTACTTGT+GGG | - | chr4.1:47299586-47299605 | MS.gene61642:intron | 30.0% | |
| GCATATGGTGATAATTGAAA+TGG | + | chr4.1:47297573-47297592 | None:intergenic | 30.0% | |
| GTTCCGAATAAAAGCAAAAA+AGG | + | chr4.1:47298913-47298932 | None:intergenic | 30.0% | |
| GTTGTGCTTATATTCTTTCA+CGG | - | chr4.1:47298666-47298685 | MS.gene61642:intron | 30.0% | |
| TATCTTGAACTAGAGAAAGA+TGG | + | chr4.1:47299570-47299589 | None:intergenic | 30.0% | |
| TCGTAAACCAATTAAGAACA+AGG | + | chr4.1:47297210-47297229 | None:intergenic | 30.0% | |
| TTCGTTTCCTTGTTCTTAAT+TGG | - | chr4.1:47297200-47297219 | MS.gene61642:intron | 30.0% | |
| TTTGTTGGATATCCTAATGT+AGG | - | chr4.1:47299410-47299429 | MS.gene61642:intron | 30.0% | |
| ! | GATTTTTCTCAAATGGAGTA+AGG | + | chr4.1:47297391-47297410 | None:intergenic | 30.0% |
| ! | GCATAAAAACACATTGCTTT+TGG | - | chr4.1:47298958-47298977 | MS.gene61642:intron | 30.0% |
| ! | GTAATTTGTGTAGACAACTT+TGG | - | chr4.1:47298820-47298839 | MS.gene61642:intron | 30.0% |
| !! | CACATTGCTTTTGGTTAATA+AGG | - | chr4.1:47298967-47298986 | MS.gene61642:intron | 30.0% |
| !! | GTTGAACTTTTTCCTACATT+AGG | + | chr4.1:47299425-47299444 | None:intergenic | 30.0% |
| !! | TTTTTGCTTTTATTCGGAAC+AGG | - | chr4.1:47298913-47298932 | MS.gene61642:intron | 30.0% |
| !!! | GTTGTATCAGCATTTTAGTT+GGG | - | chr4.1:47297988-47298007 | MS.gene61642:intron | 30.0% |
| AAAGCAAAAAAGGTCATGCA+AGG | + | chr4.1:47298903-47298922 | None:intergenic | 35.0% | |
| AAGTTCAACTATCAATGCAC+TGG | - | chr4.1:47299436-47299455 | MS.gene61642:intron | 35.0% | |
| AGACACGAAGATATATGGAA+GGG | - | chr4.1:47299259-47299278 | MS.gene61642:intron | 35.0% | |
| AGCAAGATATAGTTCTCTCA+TGG | - | chr4.1:47297841-47297860 | MS.gene61642:intron | 35.0% | |
| ATTGGGGAGGGATAAAAAAT+AGG | + | chr4.1:47298262-47298281 | None:intergenic | 35.0% | |
| CATCATGAGCTTGAAACTAA+AGG | - | chr4.1:47298166-47298185 | MS.gene61642:intron | 35.0% | |
| GCTTGTTCGAACAATAATAG+TGG | - | chr4.1:47298110-47298129 | MS.gene61642:intron | 35.0% | |
| GGAAGTCACATTAACATAAG+TGG | + | chr4.1:47297685-47297704 | None:intergenic | 35.0% | |
| GTAGATATGAGAAGAAGTTC+AGG | - | chr4.1:47299323-47299342 | MS.gene61642:CDS | 35.0% | |
| GTCAACTTAGCATTTCCTTA+AGG | + | chr4.1:47298601-47298620 | None:intergenic | 35.0% | |
| GTCCGCTATTCTATTAAAGA+TGG | - | chr4.1:47297966-47297985 | MS.gene61642:intron | 35.0% | |
| TAAAGAGAATACCATGAGCA+CGG | + | chr4.1:47299148-47299167 | None:intergenic | 35.0% | |
| TAGTTTCAAGCTCATGATGA+AGG | + | chr4.1:47298165-47298184 | None:intergenic | 35.0% | |
| TATGTTAATGTGACTTCCAG+TGG | - | chr4.1:47297687-47297706 | MS.gene61642:intron | 35.0% | |
| TTCCATATATCTTCGTGTCT+GGG | + | chr4.1:47299259-47299278 | None:intergenic | 35.0% | |
| TTGGTTTACGATTACAAGCT+GGG | - | chr4.1:47297219-47297238 | MS.gene61642:intron | 35.0% | |
| TTTATCACAGGCTGATAACA+TGG | - | chr4.1:47299220-47299239 | MS.gene61642:intron | 35.0% | |
| ! | ATGATGTTTTTCGCTCCTTA+AGG | - | chr4.1:47298583-47298602 | MS.gene61642:CDS | 35.0% |
| ! | ATTGGTTTACGATTACAAGC+TGG | - | chr4.1:47297218-47297237 | MS.gene61642:intron | 35.0% |
| !! | GGTTGTATCAGCATTTTAGT+TGG | - | chr4.1:47297987-47298006 | MS.gene61642:intron | 35.0% |
| !!! | AAAGTGCTTTGTTTTTCCTG+GGG | + | chr4.1:47299492-47299511 | None:intergenic | 35.0% |
| !!! | AGGTGACACCAGTTTTTTTT+TGG | + | chr4.1:47299466-47299485 | None:intergenic | 35.0% |
| !!! | CACTTGTTTTCAGCTTGTTA+TGG | - | chr4.1:47298511-47298530 | MS.gene61642:intron | 35.0% |
| !!! | GAAAGTGCTTTGTTTTTCCT+GGG | + | chr4.1:47299493-47299512 | None:intergenic | 35.0% |
| !!! | TGAAAGTGCTTTGTTTTTCC+TGG | + | chr4.1:47299494-47299513 | None:intergenic | 35.0% |
| AAACATCATACCTCAAGGTC+AGG | + | chr4.1:47298572-47298591 | None:intergenic | 40.0% | |
| AACCCAGACACGAAGATATA+TGG | - | chr4.1:47299254-47299273 | MS.gene61642:intron | 40.0% | |
| ACTAATCAGGACAGTCACAA+AGG | + | chr4.1:47299543-47299562 | None:intergenic | 40.0% | |
| ATTGTCGTCTGAGGATTTAG+AGG | + | chr4.1:47299351-47299370 | None:intergenic | 40.0% | |
| CAAAAAGCTCGGTTTATCAC+AGG | - | chr4.1:47299208-47299227 | MS.gene61642:intron | 40.0% | |
| CAGACACGAAGATATATGGA+AGG | - | chr4.1:47299258-47299277 | MS.gene61642:intron | 40.0% | |
| CCACTAGCAATGATAGACAA+TGG | - | chr4.1:47297257-47297276 | MS.gene61642:intron | 40.0% | |
| CCATTGTCTATCATTGCTAG+TGG | + | chr4.1:47297260-47297279 | None:intergenic | 40.0% | |
| CTAATCAGGACAGTCACAAA+GGG | + | chr4.1:47299542-47299561 | None:intergenic | 40.0% | |
| CTTCCATATATCTTCGTGTC+TGG | + | chr4.1:47299260-47299279 | None:intergenic | 40.0% | |
| GCGAAAAACATCATACCTCA+AGG | + | chr4.1:47298577-47298596 | None:intergenic | 40.0% | |
| TGTTGGGTCATCCTATCAAT+TGG | + | chr4.1:47299618-47299637 | None:intergenic | 40.0% | |
| TTGATAGGATGACCCAACAT+CGG | - | chr4.1:47299619-47299638 | MS.gene61642:CDS | 40.0% | |
| ! | AAGCCTTTTCCTACTAAGTG+CGG | + | chr4.1:47297937-47297956 | None:intergenic | 40.0% |
| ! | ATCTTTTACCTGCTTCTGTC+AGG | - | chr4.1:47298993-47299012 | MS.gene61642:intron | 40.0% |
| ! | CAACAGAAAAGTACGGTCAT+GGG | + | chr4.1:47297770-47297789 | None:intergenic | 40.0% |
| ! | CTGGTTGGCCAAAAAAAAAC+TGG | - | chr4.1:47299455-47299474 | MS.gene61642:intron | 40.0% |
| ! | CTTTTTGCCTTCCAAAACTG+CGG | + | chr4.1:47299195-47299214 | None:intergenic | 40.0% |
| ! | GCTGTCTACGGATTATTTGT+TGG | - | chr4.1:47297718-47297737 | MS.gene61642:intron | 40.0% |
| ! | TCAACAGAAAAGTACGGTCA+TGG | + | chr4.1:47297771-47297790 | None:intergenic | 40.0% |
| ! | TCAACTATCAATGCACTGGT+TGG | - | chr4.1:47299440-47299459 | MS.gene61642:intron | 40.0% |
| ! | TGACCGTACTTTTCTGTTGA+CGG | - | chr4.1:47297771-47297790 | MS.gene61642:CDS | 40.0% |
| !!! | GTTTTGGAAGGCAAAAAGCT+CGG | - | chr4.1:47299197-47299216 | MS.gene61642:intron | 40.0% |
| ATCATCGAGTCACGTAGTTG+TGG | - | chr4.1:47299385-47299404 | MS.gene61642:CDS | 45.0% | |
| CACGTAGTTGTGGGATTTGT+TGG | - | chr4.1:47299395-47299414 | MS.gene61642:intron | 45.0% | |
| GAACCGCACTTAGTAGGAAA+AGG | - | chr4.1:47297931-47297950 | MS.gene61642:intron | 45.0% | |
| GCACTTAGTAGGAAAAGGCT+TGG | - | chr4.1:47297936-47297955 | MS.gene61642:intron | 45.0% | |
| TAAAGCGAACCGCACTTAGT+AGG | - | chr4.1:47297925-47297944 | MS.gene61642:intron | 45.0% | |
| TATCCAAACCTGACAGAAGC+AGG | + | chr4.1:47299004-47299023 | None:intergenic | 45.0% | |
| TCAGGACAGCGATAGAACAA+TGG | + | chr4.1:47298554-47298573 | None:intergenic | 45.0% | |
| TCATCGAGTCACGTAGTTGT+GGG | - | chr4.1:47299386-47299405 | MS.gene61642:CDS | 45.0% | |
| TGATAGGATGACCCAACATC+GGG | - | chr4.1:47299620-47299639 | MS.gene61642:CDS | 45.0% | |
| TTACCTGCTTCTGTCAGGTT+TGG | - | chr4.1:47298998-47299017 | MS.gene61642:intron | 45.0% | |
| TTCGGAACAGGCTTATGCAA+AGG | - | chr4.1:47298925-47298944 | MS.gene61642:intron | 45.0% | |
| TTGATATCTGGAGACAGCTC+TGG | - | chr4.1:47297411-47297430 | MS.gene61642:CDS | 45.0% | |
| ! | GTCACAAAGGGTCAGCTTTT+CGG | + | chr4.1:47299530-47299549 | None:intergenic | 45.0% |
| ! | TAAAGCTGCTACCGCAGTTT+TGG | - | chr4.1:47299181-47299200 | MS.gene61642:intron | 45.0% |
| ! | TGGTGATGCTTTCAGACTTG+AGG | - | chr4.1:47297350-47297369 | MS.gene61642:intron | 45.0% |
| !! | AACAGAAGCATTGTCGTCTG+AGG | + | chr4.1:47299360-47299379 | None:intergenic | 45.0% |
| !! | AGCGCAGTGATTTGGTAAGT+TGG | - | chr4.1:47297444-47297463 | MS.gene61642:CDS | 45.0% |
| !!! | CTTTGTTTTTCCTGGGGTAG+AGG | + | chr4.1:47299486-47299505 | None:intergenic | 45.0% |
| AAAGGTCATGCAAGGCACAC+AGG | + | chr4.1:47298895-47298914 | None:intergenic | 50.0% | |
| ATGCAAGGCACACAGGAGAA+TGG | + | chr4.1:47298888-47298907 | None:intergenic | 50.0% | |
| ATTGGCATGAAGCTCGTCAG+CGG | + | chr4.1:47297117-47297136 | None:intergenic | 50.0% | |
| CAGGGGAACAGAAGAAACAC+AGG | + | chr4.1:47299101-47299120 | None:intergenic | 50.0% | |
| CGTGTGTGTGTGTGTGTTGT+GGG | + | chr4.1:47297812-47297831 | None:intergenic | 50.0% | |
| CTATCGCTTCTGCCTCTGAT+TGG | + | chr4.1:47299304-47299323 | None:intergenic | 50.0% | |
| GCAGAATACTTCCGTGCTCA+TGG | - | chr4.1:47299134-47299153 | MS.gene61642:intron | 50.0% | |
| GGAACAGGCTTATGCAAAGG+AGG | - | chr4.1:47298928-47298947 | MS.gene61642:intron | 50.0% | |
| GGGCCGTCAACAGAAAAGTA+CGG | + | chr4.1:47297777-47297796 | None:intergenic | 50.0% | |
| GGTTGTTGAGCGCAGTGATT+TGG | - | chr4.1:47297436-47297455 | MS.gene61642:CDS | 50.0% | |
| GTGTGTGTGTGTGTGTTGTG+GGG | + | chr4.1:47297811-47297830 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTTGTGG+GGG | + | chr4.1:47297810-47297829 | None:intergenic | 50.0% | |
| TTGGACACACTCCCGATGTT+GGG | + | chr4.1:47299634-47299653 | None:intergenic | 50.0% | |
| ! | ATATCTGGAGACAGCTCTGG+AGG | - | chr4.1:47297414-47297433 | MS.gene61642:CDS | 50.0% |
| !! | GTGGGGTGTTGCCAATTGAT+AGG | - | chr4.1:47299604-47299623 | MS.gene61642:CDS | 50.0% |
| !! | TATCTGGAGACAGCTCTGGA+GGG | - | chr4.1:47297415-47297434 | MS.gene61642:CDS | 50.0% |
| CTATCGCTGTCCTGACCTTG+AGG | - | chr4.1:47298559-47298578 | MS.gene61642:CDS | 55.0% | |
| CTTCTGCCTCTGATTGGAGG+CGG | + | chr4.1:47299298-47299317 | None:intergenic | 55.0% | |
| CTTGGACACACTCCCGATGT+TGG | + | chr4.1:47299635-47299654 | None:intergenic | 55.0% | |
| GCGTGTGTGTGTGTGTGTTG+TGG | + | chr4.1:47297813-47297832 | None:intergenic | 55.0% | |
| GTGACTTCCAGTGGTTCGTC+TGG | - | chr4.1:47297696-47297715 | MS.gene61642:intron | 55.0% | |
| GTGGTTCGTCTGGCTGTCTA+CGG | - | chr4.1:47297706-47297725 | MS.gene61642:intron | 55.0% | |
| GTGTGTGTGTGTGTTGTGGG+GGG | + | chr4.1:47297809-47297828 | None:intergenic | 55.0% | |
| GTTCCCCTGCAGAGAGAAGT+GGG | - | chr4.1:47299112-47299131 | MS.gene61642:intron | 55.0% | |
| TAGACAGCCAGACGAACCAC+TGG | + | chr4.1:47297706-47297725 | None:intergenic | 55.0% | |
| TCGCTTCTGCCTCTGATTGG+AGG | + | chr4.1:47299301-47299320 | None:intergenic | 55.0% | |
| TCTGCCCACTTCTCTCTGCA+GGG | + | chr4.1:47299119-47299138 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTTGTGGGG+GGG | + | chr4.1:47297808-47297827 | None:intergenic | 55.0% | |
| TGTTCCCCTGCAGAGAGAAG+TGG | - | chr4.1:47299111-47299130 | MS.gene61642:intron | 55.0% | |
| TTCTGCCCACTTCTCTCTGC+AGG | + | chr4.1:47299120-47299139 | None:intergenic | 55.0% | |
| TTCTGCCTCTGATTGGAGGC+GGG | + | chr4.1:47299297-47299316 | None:intergenic | 55.0% | |
| !!! | GCTGCTACCGCAGTTTTGGA+AGG | - | chr4.1:47299185-47299204 | MS.gene61642:intron | 55.0% |
| CTGCCCACTTCTCTCTGCAG+GGG | + | chr4.1:47299118-47299137 | None:intergenic | 60.0% | |
| CTTAGCCCGCCTCCAATCAG+AGG | - | chr4.1:47299289-47299308 | MS.gene61642:intron | 60.0% | |
| GTGTGTGTGTGTTGTGGGGG+GGG | + | chr4.1:47297807-47297826 | None:intergenic | 60.0% | |
| TGTGTGTGTGTTGTGGGGGG+GGG | + | chr4.1:47297806-47297825 | None:intergenic | 60.0% | |
| !! | ACTGGTGTCACCTCTACCCC+AGG | - | chr4.1:47299473-47299492 | MS.gene61642:intron | 60.0% |
| CCTGGCGTCGCAGCTTAGCA+AGG | - | chr4.1:47297156-47297175 | MS.gene61642:intron | 65.0% | |
| CCTTGCTAAGCTGCGACGCC+AGG | + | chr4.1:47297159-47297178 | None:intergenic | 65.0% | |
| GTGTGTGTGTTGTGGGGGGG+GGG | + | chr4.1:47297805-47297824 | None:intergenic | 65.0% | |
| TGTGTGTGTTGTGGGGGGGG+GGG | + | chr4.1:47297804-47297823 | None:intergenic | 65.0% | |
| GTGTGTGTTGTGGGGGGGGG+GGG | + | chr4.1:47297803-47297822 | None:intergenic | 70.0% | |
| GTTGTGGGGGGGGGGGGTTA+GGG | + | chr4.1:47297797-47297816 | None:intergenic | 70.0% | |
| TGTTGTGGGGGGGGGGGGTT+AGG | + | chr4.1:47297798-47297817 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 47297110 | 47299664 | 47297110 | ID=MS.gene61642 |
| chr4.1 | mRNA | 47297110 | 47299664 | 47297110 | ID=MS.gene61642.t1;Parent=MS.gene61642 |
| chr4.1 | exon | 47299597 | 47299664 | 47299597 | ID=MS.gene61642.t1.exon1;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47299597 | 47299664 | 47299597 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47299317 | 47299409 | 47299317 | ID=MS.gene61642.t1.exon2;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47299317 | 47299409 | 47299317 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47298524 | 47298644 | 47298524 | ID=MS.gene61642.t1.exon3;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47298524 | 47298644 | 47298524 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47298194 | 47298250 | 47298194 | ID=MS.gene61642.t1.exon4;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47298194 | 47298250 | 47298194 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47297760 | 47297839 | 47297760 | ID=MS.gene61642.t1.exon5;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47297760 | 47297839 | 47297760 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47297398 | 47297650 | 47297398 | ID=MS.gene61642.t1.exon6;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47297398 | 47297650 | 47297398 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| chr4.1 | exon | 47297110 | 47297148 | 47297110 | ID=MS.gene61642.t1.exon7;Parent=MS.gene61642.t1 |
| chr4.1 | CDS | 47297110 | 47297148 | 47297110 | ID=cds.MS.gene61642.t1;Parent=MS.gene61642.t1 |
| Gene Sequence |
| Protein sequence |
