Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64071.t1 | XP_004493865.1 | 100 | 203 | 0 | 0 | 20 | 222 | 244 | 446 | 2.40E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64071.t1 | P46466 | 98.0 | 203 | 4 | 0 | 20 | 222 | 246 | 448 | 5.3e-108 | 391.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64071.t1 | Q2HTA3 | 100.0 | 203 | 0 | 0 | 20 | 222 | 243 | 445 | 1.7e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene64071 | 0.854431 | 1.24E-61 | -1.69E-46 |
| MS.gene049873 | MS.gene64071 | 0.819072 | 1.41E-52 | -1.69E-46 |
| MS.gene050352 | MS.gene64071 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene64071 | 0.832852 | 7.46E-56 | -1.69E-46 |
| MS.gene050752 | MS.gene64071 | 0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene64071 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene64071 | 0.841869 | 3.66E-58 | -1.69E-46 |
| MS.gene051234 | MS.gene64071 | 0.812225 | 4.72E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene64071 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene051328 | MS.gene64071 | 0.818355 | 2.05E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene64071 | 0.839753 | 1.31E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene64071 | 0.801554 | 8.52E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene64071 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene64071 | 0.826319 | 2.90E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene64071 | 0.813653 | 2.30E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene64071 | 0.819408 | 1.18E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene64071 | 0.820857 | 5.49E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene64071 | 0.833197 | 6.12E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene64071 | 0.805684 | 1.19E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene64071 | 0.816108 | 6.55E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene64071 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene64071 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene64071 | 0.820016 | 8.57E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene64071 | 0.804598 | 2.00E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene64071 | 0.843861 | 1.08E-58 | -1.69E-46 |
| MS.gene056595 | MS.gene64071 | 0.80939 | 1.94E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene64071 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene64071 | 0.812164 | 4.87E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene64071 | 0.826886 | 2.12E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene64071 | 0.854052 | 1.59E-61 | -1.69E-46 |
| MS.gene058009 | MS.gene64071 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene64071 | 0.838072 | 3.57E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene64071 | 0.813381 | 2.63E-51 | -1.69E-46 |
| MS.gene059151 | MS.gene64071 | 0.859662 | 3.54E-63 | -1.69E-46 |
| MS.gene060429 | MS.gene64071 | 0.857383 | 1.69E-62 | -1.69E-46 |
| MS.gene060917 | MS.gene64071 | 0.81355 | 2.42E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTTCCCTCACAAGTTT+TGG | 0.248853 | 7.4:-10659121 | None:intergenic |
| GCATGTGATCTTTACTTGTA+TGG | 0.352849 | 7.4:+10658893 | None:intergenic |
| CAATTATATGCATTAATTAA+CGG | 0.377725 | 7.4:+10658920 | MS.gene64071:CDS |
| GTTATGTTTAAGAAGAAAGA+AGG | 0.390674 | 7.4:+10661465 | MS.gene64071:CDS |
| TAGAATCAAAACCATCTAAC+TGG | 0.394542 | 7.4:-10659428 | None:intergenic |
| AGAAGAATTTGTCATGACTA+AGG | 0.410103 | 7.4:+10659726 | MS.gene64071:CDS |
| ATCAAGGCTTTCAATTCTGT+TGG | 0.426673 | 7.4:-10659478 | None:intergenic |
| AAATTTAGATACATACATCT+AGG | 0.429419 | 7.4:+10659677 | MS.gene64071:intron |
| GCAACATTCTTGCGTGTTGT+TGG | 0.429964 | 7.4:+10659064 | MS.gene64071:CDS |
| GAGTTGCTGAACCAGTTAGA+TGG | 0.449762 | 7.4:+10659417 | MS.gene64071:CDS |
| CTTCACATATACAATCCTTC+AGG | 0.456387 | 7.4:-10661492 | None:intergenic |
| TTCATCAATAAAGACAATAG+AGG | 0.461693 | 7.4:-10659167 | None:intergenic |
| ATGACTAAGGATGAGTTCTC+TGG | 0.469513 | 7.4:+10659739 | MS.gene64071:CDS |
| AGTAACTTCTAACCTTCATT+CGG | 0.472587 | 7.4:-10659816 | None:intergenic |
| TTATGTTTAAGAAGAAAGAA+GGG | 0.473265 | 7.4:+10661466 | MS.gene64071:CDS |
| TTTACGAGAACGCCGAATGA+AGG | 0.481823 | 7.4:+10659804 | MS.gene64071:CDS |
| CGACCTGGTCTTAGCAGAGC+TGG | 0.483758 | 7.4:-10659501 | None:intergenic |
| AAAGCAATATGTACCGAAGC+TGG | 0.494002 | 7.4:+10659772 | MS.gene64071:CDS |
| TAAGACCAGGTCGAATAGAC+AGG | 0.501709 | 7.4:+10659511 | MS.gene64071:CDS |
| TAAAGCAAGTAAGCCAGCTT+CGG | 0.519256 | 7.4:-10659785 | None:intergenic |
| GTCTTAGCAGAGCTGGATCA+AGG | 0.525057 | 7.4:-10659494 | None:intergenic |
| CTCTCCCTGATATCAAAACT+AGG | 0.526151 | 7.4:+10659547 | MS.gene64071:CDS |
| TGCCTTCTTAAAATCAGCAT+GGG | 0.528839 | 7.4:-10661433 | None:intergenic |
| TTGCCTTCTTAAAATCAGCA+TGG | 0.546147 | 7.4:-10661434 | None:intergenic |
| ATTGATGAAATTGACGCTGT+TGG | 0.554458 | 7.4:+10659181 | MS.gene64071:CDS |
| GAATGTTGCTGATGTTGAGT+TGG | 0.578313 | 7.4:-10659050 | None:intergenic |
| TCATCAATAAAGACAATAGA+GGG | 0.582931 | 7.4:-10659166 | None:intergenic |
| TATGTTTAAGAAGAAAGAAG+GGG | 0.587164 | 7.4:+10661467 | MS.gene64071:CDS |
| GTGGAGAGCGTGAAATTCAA+AGG | 0.587676 | 7.4:+10659385 | MS.gene64071:CDS |
| AGATGGTCCAAAACTTGTGA+GGG | 0.588030 | 7.4:+10659114 | MS.gene64071:CDS |
| TGCAGGTATGATGCTCACTC+AGG | 0.601841 | 7.4:+10659363 | MS.gene64071:intron |
| TGAAATTCAAAGGACCATGT+TGG | 0.608156 | 7.4:+10659395 | MS.gene64071:CDS |
| AAGAAAGAAGGGGTGCCTGA+AGG | 0.613773 | 7.4:+10661477 | MS.gene64071:CDS |
| CTGGTTCAGCAACTCCAACA+TGG | 0.624925 | 7.4:-10659409 | None:intergenic |
| GATCCAGCTCTGCTAAGACC+AGG | 0.627123 | 7.4:+10659498 | MS.gene64071:CDS |
| GAGATGGTCCAAAACTTGTG+AGG | 0.639633 | 7.4:+10659113 | MS.gene64071:CDS |
| TTGACGCTGTTGGTACAAAG+AGG | 0.641384 | 7.4:+10659191 | MS.gene64071:CDS |
| AGGTATGATGCTCACTCAGG+TGG | 0.668411 | 7.4:+10659366 | MS.gene64071:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAAAAAAATCAA+TGG | - | chr7.4:10660952-10660971 | None:intergenic | 10.0% |
| !! | AAAAAAAAATATTAGAATGG+TGG | + | chr7.4:10661174-10661193 | MS.gene64071:intron | 15.0% |
| !! | CAATTATATGCATTAATTAA+CGG | + | chr7.4:10658920-10658939 | MS.gene64071:CDS | 15.0% |
| !! | TAACTGAATATATGAATTTA+GGG | - | chr7.4:10659996-10660015 | None:intergenic | 15.0% |
| !! | TTAACTGAATATATGAATTT+AGG | - | chr7.4:10659997-10660016 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTGTACTATTT+TGG | + | chr7.4:10659842-10659861 | MS.gene64071:intron | 15.0% |
| !! | AAATTTAGATACATACATCT+AGG | + | chr7.4:10659677-10659696 | MS.gene64071:intron | 20.0% |
| !! | AATAAAACAAAACAAAAGAG+TGG | - | chr7.4:10660747-10660766 | None:intergenic | 20.0% |
| !! | AATATAAATGTCAGAAAACA+CGG | - | chr7.4:10660830-10660849 | None:intergenic | 20.0% |
| !! | ATAAAACAAAACAAAAGAGT+GGG | - | chr7.4:10660746-10660765 | None:intergenic | 20.0% |
| !! | ATATAAATGTAAAAATACCC+AGG | - | chr7.4:10660882-10660901 | None:intergenic | 20.0% |
| !! | CTGTTAATTATACTGTTAAT+TGG | + | chr7.4:10661003-10661022 | MS.gene64071:intron | 20.0% |
| !! | GAATAACAAAATTATAGCAT+AGG | + | chr7.4:10660017-10660036 | MS.gene64071:intron | 20.0% |
| !! | GTGAAATAAACCAAAAAAAT+GGG | - | chr7.4:10660431-10660450 | None:intergenic | 20.0% |
| !! | TAACAGTATAATTAACAGTA+TGG | - | chr7.4:10661001-10661020 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGAAGAAAGAA+GGG | + | chr7.4:10661466-10661485 | MS.gene64071:CDS | 20.0% |
| !!! | ACATCTAAATTGTACTATTT+TGG | + | chr7.4:10659870-10659889 | MS.gene64071:intron | 20.0% |
| !!! | ATAGTACAATTTAGATGTTT+TGG | - | chr7.4:10659868-10659887 | None:intergenic | 20.0% |
| !!! | GAATTGATTCAAAAATACTT+AGG | + | chr7.4:10659091-10659110 | MS.gene64071:CDS | 20.0% |
| !!! | TTAAAGGTGTAAATTGAAAA+AGG | - | chr7.4:10660077-10660096 | None:intergenic | 20.0% |
| ! | ATATAAATGTCAGAAAACAC+GGG | - | chr7.4:10660829-10660848 | None:intergenic | 25.0% |
| ! | ATTCAAAAATACTTAGGAGA+TGG | + | chr7.4:10659097-10659116 | MS.gene64071:CDS | 25.0% |
| ! | CAAAATTATAGCATAGGTTA+TGG | + | chr7.4:10660023-10660042 | MS.gene64071:intron | 25.0% |
| ! | CGTGAAATAAACCAAAAAAA+TGG | - | chr7.4:10660432-10660451 | None:intergenic | 25.0% |
| ! | GTTATGTTTAAGAAGAAAGA+AGG | + | chr7.4:10661465-10661484 | MS.gene64071:CDS | 25.0% |
| ! | TATGTTTAAGAAGAAAGAAG+GGG | + | chr7.4:10661467-10661486 | MS.gene64071:CDS | 25.0% |
| ! | TCATCAATAAAGACAATAGA+GGG | - | chr7.4:10659169-10659188 | None:intergenic | 25.0% |
| ! | TCTCATTACCTCAAATTATT+TGG | - | chr7.4:10660135-10660154 | None:intergenic | 25.0% |
| ! | TGCTAAATCAAGTGAATTAA+GGG | - | chr7.4:10661079-10661098 | None:intergenic | 25.0% |
| ! | TTCATCAATAAAGACAATAG+AGG | - | chr7.4:10659170-10659189 | None:intergenic | 25.0% |
| !! | ATAATTTGAGGTAATGAGAT+TGG | + | chr7.4:10660136-10660155 | MS.gene64071:intron | 25.0% |
| !! | TAATTTGAGGTAATGAGATT+GGG | + | chr7.4:10660137-10660156 | MS.gene64071:intron | 25.0% |
| !!! | AGTAGTTTATCTTGTTTTTC+AGG | + | chr7.4:10661407-10661426 | MS.gene64071:intron | 25.0% |
| !!! | CACTTAAAATTTTGAGAGAA+AGG | + | chr7.4:10660188-10660207 | MS.gene64071:intron | 25.0% |
| !!! | TCTCTCAAAATTTTAAGTGA+TGG | - | chr7.4:10660187-10660206 | None:intergenic | 25.0% |
| !!! | TTCTTGGTATGTTTTTAAAC+TGG | + | chr7.4:10661206-10661225 | MS.gene64071:intron | 25.0% |
| AAACATACAGTGTTCTAACA+AGG | - | chr7.4:10660501-10660520 | None:intergenic | 30.0% | |
| AACATACAGTGTTCTAACAA+GGG | - | chr7.4:10660500-10660519 | None:intergenic | 30.0% | |
| ACAGATCATAAGTAGATGAA+AGG | - | chr7.4:10660721-10660740 | None:intergenic | 30.0% | |
| AGAAGAATTTGTCATGACTA+AGG | + | chr7.4:10659726-10659745 | MS.gene64071:CDS | 30.0% | |
| AGGTGTAAATTGAAAAAGGT+TGG | - | chr7.4:10660073-10660092 | None:intergenic | 30.0% | |
| AGTAACTTCTAACCTTCATT+CGG | - | chr7.4:10659819-10659838 | None:intergenic | 30.0% | |
| ATGTGGAAGGAAATATTTGT+TGG | + | chr7.4:10659907-10659926 | MS.gene64071:intron | 30.0% | |
| ATTATAGCATAGGTTATGGT+CGG | + | chr7.4:10660027-10660046 | MS.gene64071:intron | 30.0% | |
| ATTTGTGAGCAAGAGAAAAA+AGG | - | chr7.4:10660636-10660655 | None:intergenic | 30.0% | |
| CTGCTAAATCAAGTGAATTA+AGG | - | chr7.4:10661080-10661099 | None:intergenic | 30.0% | |
| GATCTTGCTTTGCATTTAAT+TGG | + | chr7.4:10661285-10661304 | MS.gene64071:intron | 30.0% | |
| GCTAAATCAAGTGAATTAAG+GGG | - | chr7.4:10661078-10661097 | None:intergenic | 30.0% | |
| TAGAATCAAAACCATCTAAC+TGG | - | chr7.4:10659431-10659450 | None:intergenic | 30.0% | |
| TAGAGATGCCAAATAATTTG+AGG | + | chr7.4:10660124-10660143 | MS.gene64071:intron | 30.0% | |
| TGTTATTGACCTGTTTGTTT+AGG | + | chr7.4:10660969-10660988 | MS.gene64071:intron | 30.0% | |
| TTAGCAGAGTGGAAAAAAAA+TGG | + | chr7.4:10661093-10661112 | MS.gene64071:intron | 30.0% | |
| TTTGTGAGCAAGAGAAAAAA+GGG | - | chr7.4:10660635-10660654 | None:intergenic | 30.0% | |
| ! | AAGATAAACTACTGATGATG+AGG | - | chr7.4:10661400-10661419 | None:intergenic | 30.0% |
| ! | AGATAAACTACTGATGATGA+GGG | - | chr7.4:10661399-10661418 | None:intergenic | 30.0% |
| ! | ATTGTCTTCTGCTAGTTTAT+TGG | + | chr7.4:10661312-10661331 | MS.gene64071:intron | 30.0% |
| ! | CTCCTGAAAAGATCAATTTT+GGG | + | chr7.4:10660232-10660251 | MS.gene64071:intron | 30.0% |
| ! | TCCTGAAAAGATCAATTTTG+GGG | + | chr7.4:10660233-10660252 | MS.gene64071:intron | 30.0% |
| !! | TTGAATGTGGCATTTTGTTT+TGG | + | chr7.4:10659266-10659285 | MS.gene64071:intron | 30.0% |
| !! | TTGGTATGTTTTTAAACTGG+CGG | + | chr7.4:10661209-10661228 | MS.gene64071:intron | 30.0% |
| !!! | CTTGTACCTTGTATTTTTTG+AGG | + | chr7.4:10661350-10661369 | MS.gene64071:intron | 30.0% |
| !!! | TACCTTGTATTTTTTGAGGT+GGG | + | chr7.4:10661354-10661373 | MS.gene64071:intron | 30.0% |
| !!! | TGAATGTGGCATTTTGTTTT+GGG | + | chr7.4:10659267-10659286 | MS.gene64071:intron | 30.0% |
| !!! | TTAGATGGTTTTGATTCTAG+AGG | + | chr7.4:10659432-10659451 | MS.gene64071:CDS | 30.0% |
| !!! | TTTCCTGCGACTTTTTTTAA+AGG | - | chr7.4:10660093-10660112 | None:intergenic | 30.0% |
| AAAAATACCCAGGACATGAA+TGG | - | chr7.4:10660872-10660891 | None:intergenic | 35.0% | |
| AACCCACCTCAAAAAATACA+AGG | - | chr7.4:10661359-10661378 | None:intergenic | 35.0% | |
| AATGTGTCCTTTCTTGAATG+TGG | + | chr7.4:10659253-10659272 | MS.gene64071:intron | 35.0% | |
| AGATCTCGAATATGACTACT+AGG | - | chr7.4:10661270-10661289 | None:intergenic | 35.0% | |
| AGTGATGGTTTAAGCCTTTA+AGG | - | chr7.4:10660172-10660191 | None:intergenic | 35.0% | |
| ATCAAGGCTTTCAATTCTGT+TGG | - | chr7.4:10659481-10659500 | None:intergenic | 35.0% | |
| ATCGAAACAGAGAAGGATAT+AGG | - | chr7.4:10660534-10660553 | None:intergenic | 35.0% | |
| ATTAAAGCTCACGCATATGT+AGG | - | chr7.4:10660795-10660814 | None:intergenic | 35.0% | |
| ATTCACTTGATTTAGCAGAG+TGG | + | chr7.4:10661082-10661101 | MS.gene64071:intron | 35.0% | |
| ATTGATGAAATTGACGCTGT+TGG | + | chr7.4:10659181-10659200 | MS.gene64071:CDS | 35.0% | |
| CAAAATGCCACATTCAAGAA+AGG | - | chr7.4:10659263-10659282 | None:intergenic | 35.0% | |
| CGTTATTGAGTATCAGCTTA+AGG | + | chr7.4:10659216-10659235 | MS.gene64071:intron | 35.0% | |
| GATGAGGGGTAAAAAAACAT+AGG | - | chr7.4:10661384-10661403 | None:intergenic | 35.0% | |
| GTGCTTGCATGTAAACTAAA+AGG | - | chr7.4:10660679-10660698 | None:intergenic | 35.0% | |
| TGAAATTCAAAGGACCATGT+TGG | + | chr7.4:10659395-10659414 | MS.gene64071:CDS | 35.0% | |
| TGAACTACGATATGTAGTCT+GGG | - | chr7.4:10660287-10660306 | None:intergenic | 35.0% | |
| TGCCTTCTTAAAATCAGCAT+GGG | - | chr7.4:10661436-10661455 | None:intergenic | 35.0% | |
| TTAAAGCTCACGCATATGTA+GGG | - | chr7.4:10660794-10660813 | None:intergenic | 35.0% | |
| TTGCCTTCTTAAAATCAGCA+TGG | - | chr7.4:10661437-10661456 | None:intergenic | 35.0% | |
| TTGGGTAAGAATCTCCTTAA+AGG | + | chr7.4:10660155-10660174 | MS.gene64071:intron | 35.0% | |
| TTTCTCTTGCTCACAAATTC+TGG | + | chr7.4:10660638-10660657 | MS.gene64071:intron | 35.0% | |
| ! | AAAAGTTCCCTCACAAGTTT+TGG | - | chr7.4:10659124-10659143 | None:intergenic | 35.0% |
| ! | ACACCTTTAAAAAAAGTCGC+AGG | + | chr7.4:10660087-10660106 | MS.gene64071:intron | 35.0% |
| ! | GATAAACTACTGATGATGAG+GGG | - | chr7.4:10661398-10661417 | None:intergenic | 35.0% |
| ! | GCTCCTGAAAAGATCAATTT+TGG | + | chr7.4:10660231-10660250 | MS.gene64071:intron | 35.0% |
| !! | ATGGTGGTGAAAGTTTTTCT+TGG | + | chr7.4:10661190-10661209 | MS.gene64071:intron | 35.0% |
| !!! | GCTAATCTCACCCATTTTTT+TGG | + | chr7.4:10660418-10660437 | MS.gene64071:intron | 35.0% |
| !!! | GTACCTTGTATTTTTTGAGG+TGG | + | chr7.4:10661353-10661372 | MS.gene64071:intron | 35.0% |
| !!! | GTCTCCTAGTTTTGATATCA+GGG | - | chr7.4:10659554-10659573 | None:intergenic | 35.0% |
| !!! | TTGTATTTTTTGAGGTGGGT+TGG | + | chr7.4:10661358-10661377 | MS.gene64071:intron | 35.0% |
| AAAGCAATATGTACCGAAGC+TGG | + | chr7.4:10659772-10659791 | MS.gene64071:CDS | 40.0% | |
| AAAGCCAGAAAATTCAGGCT+AGG | - | chr7.4:10660603-10660622 | None:intergenic | 40.0% | |
| AAGTCGCAGGAAAAATGAAG+TGG | + | chr7.4:10660100-10660119 | MS.gene64071:intron | 40.0% | |
| AATATGACTACTAGGCCTTG+CGG | - | chr7.4:10661262-10661281 | None:intergenic | 40.0% | |
| AGATGGTCCAAAACTTGTGA+GGG | + | chr7.4:10659114-10659133 | MS.gene64071:CDS | 40.0% | |
| AGTCGCAGGAAAAATGAAGT+GGG | + | chr7.4:10660101-10660120 | MS.gene64071:intron | 40.0% | |
| ATCTGCAAAGCCAAAACACT+CGG | - | chr7.4:10660389-10660408 | None:intergenic | 40.0% | |
| ATGACTAAGGATGAGTTCTC+TGG | + | chr7.4:10659739-10659758 | MS.gene64071:CDS | 40.0% | |
| CAAATAGCTGATCATGTGGA+AGG | + | chr7.4:10659894-10659913 | MS.gene64071:intron | 40.0% | |
| CAAGAGAAAAAAGGGTTGCT+GGG | - | chr7.4:10660627-10660646 | None:intergenic | 40.0% | |
| CTCTCCCTGATATCAAAACT+AGG | + | chr7.4:10659547-10659566 | MS.gene64071:CDS | 40.0% | |
| CTGAACTACGATATGTAGTC+TGG | - | chr7.4:10660288-10660307 | None:intergenic | 40.0% | |
| CTTCCACATGATCAGCTATT+TGG | - | chr7.4:10659896-10659915 | None:intergenic | 40.0% | |
| GAATGTTGCTGATGTTGAGT+TGG | - | chr7.4:10659053-10659072 | None:intergenic | 40.0% | |
| TAAAGCAAGTAAGCCAGCTT+CGG | - | chr7.4:10659788-10659807 | None:intergenic | 40.0% | |
| TGGAGCTTACCTAAACAAAC+AGG | - | chr7.4:10660981-10661000 | None:intergenic | 40.0% | |
| TGGGTTCTTTCGAATGAAGA+AGG | - | chr7.4:10660268-10660287 | None:intergenic | 40.0% | |
| ! | AACTAGGAGACGCATTTTCA+CGG | + | chr7.4:10659563-10659582 | MS.gene64071:CDS | 40.0% |
| ! | ACTTTTCTGATATGCCATGC+AGG | + | chr7.4:10659346-10659365 | MS.gene64071:intron | 40.0% |
| ! | ATGCGTGAGCTTTAATGCAT+TGG | + | chr7.4:10660799-10660818 | MS.gene64071:intron | 40.0% |
| ! | ATTTTCCTGTCTATTCGACC+TGG | - | chr7.4:10659519-10659538 | None:intergenic | 40.0% |
| ! | GCCCCAAAATTGATCTTTTC+AGG | - | chr7.4:10660237-10660256 | None:intergenic | 40.0% |
| ! | TGCGTGAGCTTTAATGCATT+GGG | + | chr7.4:10660800-10660819 | MS.gene64071:intron | 40.0% |
| !!! | CGTCTCCTAGTTTTGATATC+AGG | - | chr7.4:10659555-10659574 | None:intergenic | 40.0% |
| !!! | CTAGTTTTGATATCAGGGAG+AGG | - | chr7.4:10659549-10659568 | None:intergenic | 40.0% |
| !!! | GACCCATGCTGATTTTAAGA+AGG | + | chr7.4:10661431-10661450 | MS.gene64071:CDS | 40.0% |
| !!! | TGGTGTGTTTTTTAACCGCA+AGG | + | chr7.4:10661244-10661263 | MS.gene64071:intron | 40.0% |
| AAAGCCAAAACACTCGGCAA+AGG | - | chr7.4:10660383-10660402 | None:intergenic | 45.0% | |
| AAGCCAAAACACTCGGCAAA+GGG | - | chr7.4:10660382-10660401 | None:intergenic | 45.0% | |
| AGCAGTGTGTTGTACCTAGA+AGG | - | chr7.4:10660563-10660582 | None:intergenic | 45.0% | |
| ATCGTTGACCATTCATGTCC+TGG | + | chr7.4:10660861-10660880 | MS.gene64071:intron | 45.0% | |
| GAGATGGTCCAAAACTTGTG+AGG | + | chr7.4:10659113-10659132 | MS.gene64071:CDS | 45.0% | |
| GAGTTGCTGAACCAGTTAGA+TGG | + | chr7.4:10659417-10659436 | MS.gene64071:CDS | 45.0% | |
| GCAACATTCTTGCGTGTTGT+TGG | + | chr7.4:10659064-10659083 | MS.gene64071:CDS | 45.0% | |
| GCAAGAGAAAAAAGGGTTGC+TGG | - | chr7.4:10660628-10660647 | None:intergenic | 45.0% | |
| GCAGTGTGTTGTACCTAGAA+GGG | - | chr7.4:10660562-10660581 | None:intergenic | 45.0% | |
| GGATTGCATCGAAACAGAGA+AGG | - | chr7.4:10660541-10660560 | None:intergenic | 45.0% | |
| GTTTCGATGCAATCCCTTCT+AGG | + | chr7.4:10660546-10660565 | MS.gene64071:intron | 45.0% | |
| TAAGACCAGGTCGAATAGAC+AGG | + | chr7.4:10659511-10659530 | MS.gene64071:CDS | 45.0% | |
| TCGTTGACCATTCATGTCCT+GGG | + | chr7.4:10660862-10660881 | MS.gene64071:intron | 45.0% | |
| TGGCCAAATAGCTGATCATG+TGG | + | chr7.4:10659890-10659909 | MS.gene64071:intron | 45.0% | |
| TGGGCAAAGCCAGAAAATTC+AGG | - | chr7.4:10660608-10660627 | None:intergenic | 45.0% | |
| TTGACGCTGTTGGTACAAAG+AGG | + | chr7.4:10659191-10659210 | MS.gene64071:CDS | 45.0% | |
| TTTACGAGAACGCCGAATGA+AGG | + | chr7.4:10659804-10659823 | MS.gene64071:CDS | 45.0% | |
| ! | AGAGTGCTTCCTTTGCTTTC+AGG | + | chr7.4:10659021-10659040 | MS.gene64071:intron | 45.0% |
| ! | GCGTGAGCTTTAATGCATTG+GGG | + | chr7.4:10660801-10660820 | MS.gene64071:intron | 45.0% |
| ! | GTGGAGAGCGTGAAATTCAA+AGG | + | chr7.4:10659385-10659404 | MS.gene64071:CDS | 45.0% |
| ! | GTGTTCCGTGTTTTCTGACA+CGG | + | chr7.4:10660767-10660786 | MS.gene64071:intron | 45.0% |
| !!! | GCATTTTGTTTTGGGCGTAG+GGG | + | chr7.4:10659275-10659294 | MS.gene64071:intron | 45.0% |
| !!! | GGCATTTTGTTTTGGGCGTA+GGG | + | chr7.4:10659274-10659293 | MS.gene64071:intron | 45.0% |
| !!! | TGGCATTTTGTTTTGGGCGT+AGG | + | chr7.4:10659273-10659292 | MS.gene64071:intron | 45.0% |
| !! | AAAAAAAAAAAATATTAGAA+TGG | + | chr7.4:10661171-10661190 | MS.gene64071:intron | 5.0% |
| ACTCGGCAAAGGGAGTTATG+AGG | - | chr7.4:10660372-10660391 | None:intergenic | 50.0% | |
| AGGGTCCGTGTCAGAAAACA+CGG | - | chr7.4:10660775-10660794 | None:intergenic | 50.0% | |
| AGGTACAACACACTGCTTGC+AGG | + | chr7.4:10660566-10660585 | MS.gene64071:intron | 50.0% | |
| AGGTATGATGCTCACTCAGG+TGG | + | chr7.4:10659366-10659385 | MS.gene64071:intron | 50.0% | |
| CGTAGTTCAGCTCTTCTCGT+TGG | + | chr7.4:10660298-10660317 | MS.gene64071:intron | 50.0% | |
| CTGGTTCAGCAACTCCAACA+TGG | - | chr7.4:10659412-10659431 | None:intergenic | 50.0% | |
| CTTCCTTTGCTTTCAGGCTG+TGG | + | chr7.4:10659027-10659046 | MS.gene64071:intron | 50.0% | |
| GAGTGAGCATCATACCTGCA+TGG | - | chr7.4:10659363-10659382 | None:intergenic | 50.0% | |
| GTCTTAGCAGAGCTGGATCA+AGG | - | chr7.4:10659497-10659516 | None:intergenic | 50.0% | |
| TGCAGGTATGATGCTCACTC+AGG | + | chr7.4:10659363-10659382 | MS.gene64071:intron | 50.0% | |
| TTATGAGGCAGCTGCAGGAT+GGG | - | chr7.4:10660357-10660376 | None:intergenic | 50.0% | |
| ! | ACTCCCTTTGCCGAGTGTTT+TGG | + | chr7.4:10660376-10660395 | MS.gene64071:intron | 50.0% |
| ! | ACTGCTTGCAGGCATTGTTC+TGG | + | chr7.4:10660577-10660596 | MS.gene64071:intron | 50.0% |
| ! | AGGAGACGCATTTTCACGGT+AGG | + | chr7.4:10659567-10659586 | MS.gene64071:intron | 50.0% |
| ! | CTGGCCTAGCCTGAATTTTC+TGG | + | chr7.4:10660596-10660615 | MS.gene64071:intron | 50.0% |
| !! | AAGAAAGAAGGGGTGCCTGA+AGG | + | chr7.4:10661477-10661496 | MS.gene64071:CDS | 50.0% |
| ACTGGCGGTGACTGTTTCAC+TGG | + | chr7.4:10661224-10661243 | MS.gene64071:intron | 55.0% | |
| GATCCAGCTCTGCTAAGACC+AGG | + | chr7.4:10659498-10659517 | MS.gene64071:CDS | 55.0% | |
| GTTATGAGGCAGCTGCAGGA+TGG | - | chr7.4:10660358-10660377 | None:intergenic | 55.0% | |
| TGGCCACAGCCTGAAAGCAA+AGG | - | chr7.4:10659033-10659052 | None:intergenic | 55.0% | |
| !! | TTTTGGGCGTAGGGGTGTGT+GGG | + | chr7.4:10659283-10659302 | MS.gene64071:intron | 55.0% |
| GGGAGTTATGAGGCAGCTGC+AGG | - | chr7.4:10660362-10660381 | None:intergenic | 60.0% | |
| ! | GTAGGGGTGTGTGGGAACAG+TGG | + | chr7.4:10659291-10659310 | MS.gene64071:intron | 60.0% |
| !! | CGACCTGGTCTTAGCAGAGC+TGG | - | chr7.4:10659504-10659523 | None:intergenic | 60.0% |
| !! | GTTTTGGGCGTAGGGGTGTG+TGG | + | chr7.4:10659282-10659301 | MS.gene64071:intron | 60.0% |
| GGCAGCTGCAGGATGGGTCA+CGG | - | chr7.4:10660351-10660370 | None:intergenic | 65.0% | |
| GGGGTGTGTGGGAACAGTGG+AGG | + | chr7.4:10659294-10659313 | MS.gene64071:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 10658894 | 10661512 | 10658894 | ID=MS.gene64071 |
| chr7.4 | mRNA | 10658894 | 10661512 | 10658894 | ID=MS.gene64071.t1;Parent=MS.gene64071 |
| chr7.4 | exon | 10658894 | 10658952 | 10658894 | ID=MS.gene64071.t1.exon1;Parent=MS.gene64071.t1 |
| chr7.4 | CDS | 10658894 | 10658952 | 10658894 | ID=cds.MS.gene64071.t1;Parent=MS.gene64071.t1 |
| chr7.4 | exon | 10659043 | 10659212 | 10659043 | ID=MS.gene64071.t1.exon2;Parent=MS.gene64071.t1 |
| chr7.4 | CDS | 10659043 | 10659212 | 10659043 | ID=cds.MS.gene64071.t1;Parent=MS.gene64071.t1 |
| chr7.4 | exon | 10659368 | 10659584 | 10659368 | ID=MS.gene64071.t1.exon3;Parent=MS.gene64071.t1 |
| chr7.4 | CDS | 10659368 | 10659584 | 10659368 | ID=cds.MS.gene64071.t1;Parent=MS.gene64071.t1 |
| chr7.4 | exon | 10659685 | 10659825 | 10659685 | ID=MS.gene64071.t1.exon4;Parent=MS.gene64071.t1 |
| chr7.4 | CDS | 10659685 | 10659825 | 10659685 | ID=cds.MS.gene64071.t1;Parent=MS.gene64071.t1 |
| chr7.4 | exon | 10661429 | 10661512 | 10661429 | ID=MS.gene64071.t1.exon5;Parent=MS.gene64071.t1 |
| chr7.4 | CDS | 10661429 | 10661512 | 10661429 | ID=cds.MS.gene64071.t1;Parent=MS.gene64071.t1 |
| Gene Sequence |
| Protein sequence |
