AlfalfaGEDB | MS.gene64981

M. sativa cultivar XinJiangDaYe / MS.gene64981

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64981.t1	XP_024629447.1	72.3	675	12	2	1	500	1	675	4.60E-260	906.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64981.t1	Q5UBY2	23.7	586	325	14	1	486	1	564	2.0e-33	145.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64981.t1	A0A396GJD5	72.3	675	12	2	1	500	1	675	3.3e-260	906.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene64981.t1	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene64981	0.802591	5.22E-49	-1.69E-46
MS.gene049378	MS.gene64981	0.822585	2.19E-53	-1.69E-46
MS.gene049435	MS.gene64981	0.805166	1.52E-49	-1.69E-46
MS.gene049669	MS.gene64981	0.802938	4.42E-49	-1.69E-46
MS.gene050226	MS.gene64981	0.832986	6.91E-56	-1.69E-46
MS.gene050227	MS.gene64981	0.837903	3.95E-57	-1.69E-46
MS.gene050228	MS.gene64981	0.841005	6.18E-58	-1.69E-46
MS.gene050303	MS.gene64981	0.803584	3.25E-49	-1.69E-46
MS.gene050442	MS.gene64981	0.822487	2.31E-53	-1.69E-46
MS.gene050623	MS.gene64981	-0.827871	1.23E-54	-1.69E-46
MS.gene050642	MS.gene64981	0.806067	9.85E-50	-1.69E-46
MS.gene050719	MS.gene64981	0.818629	1.77E-52	-1.69E-46
MS.gene050721	MS.gene64981	0.814388	1.58E-51	-1.69E-46
MS.gene050724	MS.gene64981	0.807057	6.09E-50	-1.69E-46
MS.gene051210	MS.gene64981	0.812848	3.45E-51	-1.69E-46
MS.gene051935	MS.gene64981	0.806901	6.57E-50	-1.69E-46
MS.gene052012	MS.gene64981	0.808749	2.66E-50	-1.69E-46
MS.gene052176	MS.gene64981	0.809509	1.83E-50	-1.69E-46
MS.gene052190	MS.gene64981	0.806082	9.78E-50	-1.69E-46
MS.gene052333	MS.gene64981	0.804417	2.18E-49	-1.69E-46
MS.gene052384	MS.gene64981	0.810906	9.13E-51	-1.69E-46
MS.gene053080	MS.gene64981	0.802778	4.77E-49	-1.69E-46
MS.gene053226	MS.gene64981	0.826715	2.33E-54	-1.69E-46
MS.gene054236	MS.gene64981	0.802763	4.81E-49	-1.69E-46
MS.gene054467	MS.gene64981	0.807564	4.75E-50	-1.69E-46
MS.gene054468	MS.gene64981	0.827679	1.37E-54	-1.69E-46
MS.gene054479	MS.gene64981	0.802432	5.62E-49	-1.69E-46
MS.gene054658	MS.gene64981	0.809871	1.53E-50	-1.69E-46
MS.gene055701	MS.gene64981	0.822282	2.58E-53	-1.69E-46
MS.gene055778	MS.gene64981	0.8048	1.82E-49	-1.69E-46
MS.gene05604	MS.gene64981	0.811295	7.52E-51	-1.69E-46
MS.gene056173	MS.gene64981	0.811412	7.09E-51	-1.69E-46
MS.gene056506	MS.gene64981	0.845101	5.01E-59	-1.69E-46
MS.gene056552	MS.gene64981	0.831097	2.02E-55	-1.69E-46
MS.gene057026	MS.gene64981	0.842869	1.99E-58	-1.69E-46
MS.gene057915	MS.gene64981	0.822273	2.59E-53	-1.69E-46
MS.gene058399	MS.gene64981	0.808676	2.75E-50	-1.69E-46
MS.gene058625	MS.gene64981	0.802062	6.71E-49	-1.69E-46
MS.gene058979	MS.gene64981	0.80191	7.21E-49	-1.69E-46
MS.gene059249	MS.gene64981	0.811834	5.74E-51	-1.69E-46
MS.gene060572	MS.gene64981	0.802217	6.23E-49	-1.69E-46
MS.gene060637	MS.gene64981	0.808181	3.51E-50	-1.69E-46
MS.gene060683	MS.gene64981	0.817784	2.76E-52	-1.69E-46
MS.gene060685	MS.gene64981	0.819235	1.29E-52	-1.69E-46
MS.gene060803	MS.gene64981	0.820112	8.15E-53	-1.69E-46
MS.gene060998	MS.gene64981	0.805405	1.36E-49	-1.69E-46
MS.gene061040	MS.gene64981	-0.807246	5.55E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64981.t1	MTR_6g051425	64.115	209	58	2	1	192	1	209	1.36e-88	275
MS.gene64981.t1	MTR_2g039370	78.873	71	15	0	49	119	98	168	1.68e-32	126
MS.gene64981.t1	MTR_3g465760	79.710	69	10	1	41	105	2	70	1.63e-31	116
MS.gene64981.t1	MTR_2g098920	30.088	113	75	2	12	124	78	186	5.21e-12	66.6
MS.gene64981.t1	MTR_4g035820	23.934	305	155	13	18	259	76	366	3.59e-11	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64981.t1	AT2G27110	29.795	292	184	6	189	475	225	500	4.81e-37	145
MS.gene64981.t1	AT2G27110	29.795	292	184	6	189	475	370	645	5.18e-37	145
MS.gene64981.t1	AT2G27110	29.795	292	184	6	189	475	370	645	5.18e-37	145
MS.gene64981.t1	AT4G38180	32.273	220	146	3	189	407	423	640	3.59e-34	137
MS.gene64981.t1	AT4G38180	30.052	193	113	8	13	188	72	259	5.70e-11	65.5
MS.gene64981.t1	AT4G38170	28.507	221	156	2	190	410	189	407	2.79e-31	127
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	282	503	2.23e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	339	560	2.32e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	339	560	2.37e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	339	560	2.37e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	353	574	2.81e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	339	560	3.53e-29	122
MS.gene64981.t1	AT4G19990	31.390	223	152	1	181	403	339	560	3.53e-29	122
MS.gene64981.t1	AT4G15090	31.197	234	154	4	189	422	399	625	2.07e-28	120
MS.gene64981.t1	AT4G15090	31.197	234	154	4	189	422	399	625	2.07e-28	120
MS.gene64981.t1	AT4G15090	31.197	234	154	4	189	422	399	625	2.07e-28	120
MS.gene64981.t1	AT4G15090	31.197	234	154	4	189	422	399	625	2.07e-28	120
MS.gene64981.t1	AT4G15090	31.197	234	154	4	189	422	399	625	2.07e-28	120
MS.gene64981.t1	AT3G22170	30.702	228	149	4	189	413	408	629	4.07e-28	119
MS.gene64981.t1	AT3G22170	30.702	228	149	4	189	413	408	629	4.07e-28	119
MS.gene64981.t1	AT3G06250	25.882	340	220	7	79	401	379	703	2.26e-27	116
MS.gene64981.t1	AT3G06250	25.882	340	220	7	79	401	379	703	2.26e-27	116
MS.gene64981.t1	AT3G06250	25.882	340	220	7	79	401	379	703	2.26e-27	116
MS.gene64981.t1	AT1G76320	28.837	215	148	2	188	402	335	544	1.74e-25	110
MS.gene64981.t1	AT1G76320	28.837	215	148	2	188	402	335	544	1.97e-25	110
MS.gene64981.t1	AT5G18960	26.575	365	237	10	64	413	391	739	1.99e-25	110
MS.gene64981.t1	AT5G18960	26.575	365	237	10	64	413	391	739	1.99e-25	110
MS.gene64981.t1	AT1G76320	28.837	215	148	2	188	402	335	544	1.99e-25	110
MS.gene64981.t1	AT1G76320	28.837	215	148	2	188	402	335	544	1.99e-25	110
MS.gene64981.t1	AT1G52520	26.800	250	167	5	159	400	395	636	2.85e-18	88.6
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	302	511	6.46e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	302	511	6.59e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.36e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.39e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.39e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.39e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.92e-18	87.4
MS.gene64981.t1	AT2G32250	23.721	215	157	3	189	401	343	552	7.92e-18	87.4
MS.gene64981.t1	AT5G28530	23.605	233	161	5	189	418	416	634	7.74e-16	80.9
MS.gene64981.t1	AT5G28530	29.448	163	106	3	18	175	56	214	1.13e-12	70.9
MS.gene64981.t1	AT5G28530	23.605	233	161	5	189	418	416	634	7.74e-16	80.9
MS.gene64981.t1	AT5G28530	29.448	163	106	3	18	175	56	214	1.13e-12	70.9
MS.gene64981.t1	AT5G28530	23.605	233	161	5	189	418	353	571	9.02e-16	80.5
MS.gene64981.t1	AT5G28530	29.448	163	106	3	18	175	56	214	9.56e-13	71.2
MS.gene64981.t1	AT5G28530	24.464	233	163	6	189	418	416	638	2.36e-15	79.3
MS.gene64981.t1	AT5G28530	29.448	163	106	3	18	175	56	214	1.09e-12	70.9
MS.gene64981.t1	AT5G28530	24.464	233	163	6	189	418	353	575	2.93e-15	79.0
MS.gene64981.t1	AT5G28530	29.448	163	106	3	18	175	56	214	9.78e-13	70.9
MS.gene64981.t1	AT1G10240	25.850	294	186	9	183	470	394	661	1.88e-14	76.6
MS.gene64981.t1	AT1G10240	30.168	179	111	6	18	188	49	221	3.02e-12	69.7
MS.gene64981.t1	AT1G10240	25.850	294	186	9	183	470	394	661	1.88e-14	76.6
MS.gene64981.t1	AT1G10240	30.168	179	111	6	18	188	49	221	3.02e-12	69.7
MS.gene64981.t1	AT1G80010	23.906	297	194	12	186	469	441	718	8.12e-13	71.2
MS.gene64981.t1	AT4G12850	31.579	133	83	4	9	139	6	132	4.62e-11	61.2
MS.gene64981.t1	AT3G59470	30.631	111	73	2	10	120	66	172	6.24e-11	63.2
MS.gene64981.t1	AT3G59470	30.631	111	73	2	10	120	66	172	6.24e-11	63.2
MS.gene64981.t1	AT3G59470	30.631	111	73	2	10	120	78	184	6.92e-11	63.2

Find 80 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTACATCTGAATTTAAAT+TGG	0.221172	8.4:+39525429	None:intergenic
TTGCGGATTTATAACATTAA+AGG	0.223732	8.4:-39525724	MS.gene64981:CDS
CTTGTGCTTGTTTACTTTGT+AGG	0.250825	8.4:+39526784	None:intergenic
TGTGGAAATTACTTGATATT+GGG	0.256264	8.4:-39525483	MS.gene64981:CDS
ATGTGGAAATTACTTGATAT+TGG	0.266059	8.4:-39525484	MS.gene64981:CDS
GAAAGTTACCAAGTTGATAT+TGG	0.311387	8.4:-39527024	MS.gene64981:CDS
ACTACAATTAATCTTCATAT+TGG	0.315911	8.4:+39525789	None:intergenic
CAAGAGCATGCTTTCAAAAC+AGG	0.323625	8.4:-39527239	MS.gene64981:CDS
AACTTTCCACACTCCTTCCT+TGG	0.367826	8.4:+39527040	None:intergenic
TTGCCGCAAGTTTGATTCAA+TGG	0.373385	8.4:-39525767	MS.gene64981:CDS
AGAAGACCGCATAAAGTCTT+TGG	0.373881	8.4:-39526928	MS.gene64981:CDS
GCCATTAGAGTTACAAATAG+TGG	0.377299	8.4:-39526897	MS.gene64981:CDS
TTTCTAAATGAGTATCTTGA+AGG	0.382168	8.4:-39525922	MS.gene64981:CDS
TATAAGCAGTGCTCCACTTA+TGG	0.383579	8.4:+39526202	None:intergenic
ATCATCATTGATCACTGAAA+TGG	0.387294	8.4:+39525597	None:intergenic
GTCATTCTACCATCTAGTTT+CGG	0.391713	8.4:-39525539	MS.gene64981:CDS
GAGCCTAGAGATATTTATCT+TGG	0.393295	8.4:-39527302	MS.gene64981:CDS
CTAGGCTCATCAGTTTCAAT+TGG	0.394540	8.4:+39527317	None:intergenic
CTTGACTTTCCGAAACTAGA+TGG	0.401068	8.4:+39525530	None:intergenic
CCCACTATTTGTAACTCTAA+TGG	0.401145	8.4:+39526896	None:intergenic
AAGAAGAATTTCAAAGAACT+TGG	0.405034	8.4:-39526290	MS.gene64981:CDS
TTATAAGCCACTTCACCATC+AGG	0.415225	8.4:+39527113	None:intergenic
TAAATATTAGTGAAACATTA+CGG	0.422498	8.4:-39525984	MS.gene64981:CDS
TGAGCACATGCCTAGGGGTA+TGG	0.429091	8.4:-39525635	MS.gene64981:CDS
TGTTTGTACTCTCAATCCTT+TGG	0.442113	8.4:+39526145	None:intergenic
TGCCGCAAGTTTGATTCAAT+GGG	0.448344	8.4:-39525766	MS.gene64981:CDS
TGTACTCTCAATCCTTTGGC+AGG	0.451258	8.4:+39526149	None:intergenic
TTCTTTGTAGTCATGCTTTG+CGG	0.453705	8.4:-39525741	MS.gene64981:CDS
AATGAGTATCTTGAAGGAAC+AGG	0.455830	8.4:-39525916	MS.gene64981:CDS
CAATAAAGATTGAGCATCTC+CGG	0.458631	8.4:+39526812	None:intergenic
TAACAAGAGGAGGTGTACTT+TGG	0.474858	8.4:+39526007	None:intergenic
AACAAATATCTTTGCTGAAG+TGG	0.482406	8.4:+39526981	None:intergenic
TGTATGAAATTCGCCATAAG+TGG	0.485780	8.4:-39526215	MS.gene64981:CDS
AAGAACAAATTGCTTAGCTA+TGG	0.488702	8.4:-39527078	MS.gene64981:CDS
CCATTAGAGTTACAAATAGT+GGG	0.491139	8.4:-39526896	MS.gene64981:CDS
AGCAAGAATGTATTCTCTGC+TGG	0.493952	8.4:-39526180	MS.gene64981:CDS
AACATTACGGCATGCATCTA+CGG	0.494329	8.4:-39525971	MS.gene64981:CDS
GAGCACATGCCTAGGGGTAT+GGG	0.504100	8.4:-39525634	MS.gene64981:CDS
ATGCATAATTATGTCTCCAC+TGG	0.517136	8.4:-39526855	MS.gene64981:CDS
AAGTTGAAATTTATCGAAGC+CGG	0.519905	8.4:-39526831	MS.gene64981:CDS
TGATTTATGAGCACATGCCT+AGG	0.520789	8.4:-39525642	MS.gene64981:CDS
AAGAAGCTCAAAATATTATG+TGG	0.525327	8.4:-39525501	MS.gene64981:CDS
GACAAATGTCAATGAAAATG+AGG	0.525546	8.4:-39525398	MS.gene64981:CDS
GTGGCGCCGCATAGAGGTTG+AGG	0.528015	8.4:-39526046	MS.gene64981:CDS
TGACCAAGATAAATATCTCT+AGG	0.529714	8.4:+39527299	None:intergenic
AGATTTAATGTGACCAAGGA+AGG	0.533919	8.4:-39527053	MS.gene64981:CDS
AGAAGAATTTCAAAGAACTT+GGG	0.538433	8.4:-39526289	MS.gene64981:CDS
GGAAACATGCTTCAGACCAT+TGG	0.541782	8.4:-39525377	MS.gene64981:CDS
GATTTATGAGCACATGCCTA+GGG	0.541821	8.4:-39525641	MS.gene64981:CDS
ACTTGATATTGGGGCTGAGA+GGG	0.547189	8.4:-39525473	MS.gene64981:CDS
ATAAGCTTCAAGATCATCAA+TGG	0.550335	8.4:-39526248	MS.gene64981:CDS
GTGGAAATTACTTGATATTG+GGG	0.556011	8.4:-39525482	MS.gene64981:CDS
TCACTAATATTTATAACAAG+AGG	0.557518	8.4:+39525994	None:intergenic
AGCATTGCGATAAAGAATAC+CGG	0.559831	8.4:+39525570	None:intergenic
AATATATCAATTCAGACCAA+TGG	0.559963	8.4:+39525361	None:intergenic
GATAAATTTCAACTTTCCAG+TGG	0.566800	8.4:+39526839	None:intergenic
GAGAGGGTGCGAAAAGGTGT+TGG	0.567841	8.4:-39525457	MS.gene64981:CDS
GGGGCTGAGAGGGTGCGAAA+AGG	0.580980	8.4:-39525463	MS.gene64981:CDS
TACTTGATATTGGGGCTGAG+AGG	0.584455	8.4:-39525474	MS.gene64981:CDS
GAGTATCTTGAAGGAACAGG+TGG	0.588038	8.4:-39525913	MS.gene64981:CDS
GGTGCGAAAAGGTGTTGGCA+AGG	0.590379	8.4:-39525452	MS.gene64981:CDS
AAATTCAGATGTAGAAACAA+TGG	0.596835	8.4:-39525422	MS.gene64981:CDS
TGAGAGTACAAACAATGTGT+TGG	0.597259	8.4:-39526136	MS.gene64981:CDS
CTAATATTTATAACAAGAGG+AGG	0.599669	8.4:+39525997	None:intergenic
ATCATTGATCACTGAAATGG+AGG	0.600594	8.4:+39525600	None:intergenic
CATTCACCAAAGACTTTATG+CGG	0.602476	8.4:+39526922	None:intergenic
GAATCTTCTCCCATACCCCT+AGG	0.605803	8.4:+39525625	None:intergenic
TGCCCATTGAATCAAACTTG+CGG	0.606774	8.4:+39525764	None:intergenic
CAATGAACCTGATGGTGAAG+TGG	0.607386	8.4:-39527120	MS.gene64981:CDS
GTGATCAATGATGATGATGC+CGG	0.629234	8.4:-39525589	MS.gene64981:CDS
ATTGTGATCCAATATCAACT+TGG	0.629329	8.4:+39527016	None:intergenic
AGGCATGTGCTCATAAATCA+CGG	0.631426	8.4:+39525645	None:intergenic
CATTAGAGTTACAAATAGTG+GGG	0.634264	8.4:-39526895	MS.gene64981:CDS
CTGGTATCAAGTCCTGCCAA+AGG	0.634306	8.4:-39526161	MS.gene64981:CDS
ATGTGACCAAGGAAGGAGTG+TGG	0.636883	8.4:-39527046	MS.gene64981:CDS
GGTCAGATTTAATGTGACCA+AGG	0.650278	8.4:-39527057	MS.gene64981:CDS
GCGCCGCATAGAGGTTGAGG+AGG	0.668856	8.4:-39526043	MS.gene64981:CDS
ATTAGAGTTACAAATAGTGG+GGG	0.695167	8.4:-39526894	MS.gene64981:CDS
ATTTATGAGCACATGCCTAG+GGG	0.718468	8.4:-39525640	MS.gene64981:CDS
ATTCCTCCTCAACCTCTATG+CGG	0.727553	8.4:+39526040	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATATTAGTGAAACATTA+CGG	-	chr8.4:39526726-39526745	MS.gene64981:intron	15.0%
!!	AAACTTATTTAGTAAATGCA+TGG	-	chr8.4:39526382-39526401	MS.gene64981:intron	20.0%
!!	ACTACAATTAATCTTCATAT+TGG	+	chr8.4:39526924-39526943	None:intergenic	20.0%
!!	TAAGCCTAATAAAAAATATG+TGG	-	chr8.4:39526883-39526902	MS.gene64981:CDS	20.0%
!!	TCACTAATATTTATAACAAG+AGG	+	chr8.4:39526719-39526738	None:intergenic	20.0%
!!	TTCTACATCTGAATTTAAAT+TGG	+	chr8.4:39527284-39527303	None:intergenic	20.0%
!!!	ATTGTTTTTAAATCCTTGTT+TGG	+	chr8.4:39525574-39525593	None:intergenic	20.0%
!!!	CATATTTTTTATTAGGCTTA+TGG	+	chr8.4:39526883-39526902	None:intergenic	20.0%
!	AAATTCAGATGTAGAAACAA+TGG	-	chr8.4:39527288-39527307	MS.gene64981:CDS	25.0%
!	AAGAAGAATTTCAAAGAACT+TGG	-	chr8.4:39526420-39526439	MS.gene64981:intron	25.0%
!	AAGAAGCTCAAAATATTATG+TGG	-	chr8.4:39527209-39527228	MS.gene64981:CDS	25.0%
!	ACCAATACTTCTTAAAAAGA+TGG	-	chr8.4:39527026-39527045	MS.gene64981:CDS	25.0%
!	AGAAGAATTTCAAAGAACTT+GGG	-	chr8.4:39526421-39526440	MS.gene64981:intron	25.0%
!	ATGTGGAAATTACTTGATAT+TGG	-	chr8.4:39527226-39527245	MS.gene64981:CDS	25.0%
!	CTAATATTTATAACAAGAGG+AGG	+	chr8.4:39526716-39526735	None:intergenic	25.0%
!	TAGTTGATTATCATTGCTTT+GGG	-	chr8.4:39526027-39526046	MS.gene64981:CDS	25.0%
!	TGTGGAAATTACTTGATATT+GGG	-	chr8.4:39527227-39527246	MS.gene64981:CDS	25.0%
!	TTATTTAGTAAATGCATGGA+AGG	-	chr8.4:39526386-39526405	MS.gene64981:intron	25.0%
!	TTCACTTTCATCAAATAACA+AGG	+	chr8.4:39526159-39526178	None:intergenic	25.0%
!	TTGCGGATTTATAACATTAA+AGG	-	chr8.4:39526986-39527005	MS.gene64981:CDS	25.0%
!	TTTAAAAACAATGAACCTGA+TGG	-	chr8.4:39525582-39525601	MS.gene64981:CDS	25.0%
!	TTTCTAAATGAGTATCTTGA+AGG	-	chr8.4:39526788-39526807	MS.gene64981:intron	25.0%
!!!	ACCATCTTTTTAAGAAGTAT+TGG	+	chr8.4:39527030-39527049	None:intergenic	25.0%
!!!	GTCACCACATATTTTTTATT+AGG	+	chr8.4:39526890-39526909	None:intergenic	25.0%
!!!	TAAAGATTGTTTTTGGTTGT+TGG	+	chr8.4:39526229-39526248	None:intergenic	25.0%
	AAAGATGGTCAAAAAATGCA+AGG	-	chr8.4:39527041-39527060	MS.gene64981:CDS	30.0%
	AACAAATATCTTTGCTGAAG+TGG	+	chr8.4:39525732-39525751	None:intergenic	30.0%
	AAGAACAAATTGCTTAGCTA+TGG	-	chr8.4:39525632-39525651	MS.gene64981:CDS	30.0%
	AAGTTGAAATTTATCGAAGC+CGG	-	chr8.4:39525879-39525898	MS.gene64981:CDS	30.0%
	AGTTGATTATCATTGCTTTG+GGG	-	chr8.4:39526028-39526047	MS.gene64981:CDS	30.0%
	ATAAGCTTCAAGATCATCAA+TGG	-	chr8.4:39526462-39526481	MS.gene64981:intron	30.0%
	ATCATCATTGATCACTGAAA+TGG	+	chr8.4:39527116-39527135	None:intergenic	30.0%
	ATTAGAGTTACAAATAGTGG+GGG	-	chr8.4:39525816-39525835	MS.gene64981:CDS	30.0%
	ATTGTGATCCAATATCAACT+TGG	+	chr8.4:39525697-39525716	None:intergenic	30.0%
	CATGTCATCGTTTATGTTTA+TGG	-	chr8.4:39526300-39526319	MS.gene64981:intron	30.0%
	CATTAGAGTTACAAATAGTG+GGG	-	chr8.4:39525815-39525834	MS.gene64981:CDS	30.0%
	CCATTAGAGTTACAAATAGT+GGG	-	chr8.4:39525814-39525833	MS.gene64981:CDS	30.0%
	GAAAAAGAAAACACGTTTGA+AGG	-	chr8.4:39525536-39525555	MS.gene64981:CDS	30.0%
	GACAAATGTCAATGAAAATG+AGG	-	chr8.4:39527312-39527331	MS.gene64981:CDS	30.0%
	GATAAATTTCAACTTTCCAG+TGG	+	chr8.4:39525874-39525893	None:intergenic	30.0%
	GTAGTTGATTATCATTGCTT+TGG	-	chr8.4:39526026-39526045	MS.gene64981:CDS	30.0%
	GTGGAAATTACTTGATATTG+GGG	-	chr8.4:39527228-39527247	MS.gene64981:CDS	30.0%
	TGACCAAGATAAATATCTCT+AGG	+	chr8.4:39525414-39525433	None:intergenic	30.0%
	TGATGATTTACACCAACAAA+GGG	+	chr8.4:39526110-39526129	None:intergenic	30.0%
	TTGAGAAGATGTTGAAAAAG+TGG	-	chr8.4:39526645-39526664	MS.gene64981:intron	30.0%
!	AAAGTGAAGTTTCTTTTGCT+TGG	-	chr8.4:39526171-39526190	MS.gene64981:CDS	30.0%
!	GACTTTTATTGTTCCAAACA+AGG	-	chr8.4:39525558-39525577	MS.gene64981:CDS	30.0%
!	TGAGCTGTAAAGATTGTTTT+TGG	+	chr8.4:39526236-39526255	None:intergenic	30.0%
!!	AAAGCATTTTTGGAGAGTAT+GGG	-	chr8.4:39526200-39526219	MS.gene64981:CDS	30.0%
!!	AACAGGTTTTAGTGTAAGAA+AGG	-	chr8.4:39525488-39525507	MS.gene64981:CDS	30.0%
!!	ACAGGTTTTAGTGTAAGAAA+GGG	-	chr8.4:39525489-39525508	MS.gene64981:CDS	30.0%
!!	GAAAGTTACCAAGTTGATAT+TGG	-	chr8.4:39525686-39525705	MS.gene64981:CDS	30.0%
!!	TTGGTTGTTCAAAGCATTTT+TGG	-	chr8.4:39526190-39526209	MS.gene64981:CDS	30.0%
!!!	CTTTTTAAGAAGTATTGGTC+AGG	+	chr8.4:39527025-39527044	None:intergenic	30.0%
	AAGAATGCTCCTTCACATTT+GGG	-	chr8.4:39526332-39526351	MS.gene64981:intron	35.0%
	AATGAGTATCTTGAAGGAAC+AGG	-	chr8.4:39526794-39526813	MS.gene64981:intron	35.0%
	AGATTTAATGTGACCAAGGA+AGG	-	chr8.4:39525657-39525676	MS.gene64981:CDS	35.0%
	AGCATTGCGATAAAGAATAC+CGG	+	chr8.4:39527143-39527162	None:intergenic	35.0%
	ATCATTGATCACTGAAATGG+AGG	+	chr8.4:39527113-39527132	None:intergenic	35.0%
	ATGATTTACACCAACAAAGG+GGG	+	chr8.4:39526108-39526127	None:intergenic	35.0%
	ATGCATAATTATGTCTCCAC+TGG	-	chr8.4:39525855-39525874	MS.gene64981:CDS	35.0%
	CAATAAAGATTGAGCATCTC+CGG	+	chr8.4:39525901-39525920	None:intergenic	35.0%
	CATAAACGATGACATGCATT+TGG	+	chr8.4:39526296-39526315	None:intergenic	35.0%
	CATTCACCAAAGACTTTATG+CGG	+	chr8.4:39525791-39525810	None:intergenic	35.0%
	CCCACTATTTGTAACTCTAA+TGG	+	chr8.4:39525817-39525836	None:intergenic	35.0%
	CTGTACACTGTAATAGAACA+TGG	+	chr8.4:39525955-39525974	None:intergenic	35.0%
	CTTGTGCTTGTTTACTTTGT+AGG	+	chr8.4:39525929-39525948	None:intergenic	35.0%
	GAGCCTAGAGATATTTATCT+TGG	-	chr8.4:39525408-39525427	MS.gene64981:CDS	35.0%
	GATGATTTACACCAACAAAG+GGG	+	chr8.4:39526109-39526128	None:intergenic	35.0%
	GCCATTAGAGTTACAAATAG+TGG	-	chr8.4:39525813-39525832	MS.gene64981:CDS	35.0%
	GTGATGATTTACACCAACAA+AGG	+	chr8.4:39526111-39526130	None:intergenic	35.0%
	TAAGAATGCTCCTTCACATT+TGG	-	chr8.4:39526331-39526350	MS.gene64981:intron	35.0%
	TGTATGAAATTCGCCATAAG+TGG	-	chr8.4:39526495-39526514	MS.gene64981:intron	35.0%
	TGTTTGTACTCTCAATCCTT+TGG	+	chr8.4:39526568-39526587	None:intergenic	35.0%
	TTCTTTGTAGTCATGCTTTG+CGG	-	chr8.4:39526969-39526988	MS.gene64981:CDS	35.0%
	TTGTTGGTGTAAATCATCAC+TGG	-	chr8.4:39526111-39526130	MS.gene64981:CDS	35.0%
!	GTCATTCTACCATCTAGTTT+CGG	-	chr8.4:39527171-39527190	MS.gene64981:CDS	35.0%
!	TGAGAGTACAAACAATGTGT+TGG	-	chr8.4:39526574-39526593	MS.gene64981:intron	35.0%
!	TTTTAGTGTAAGAAAGGGGA+AGG	-	chr8.4:39525494-39525513	MS.gene64981:CDS	35.0%
!!	CAAAGCATTTTTGGAGAGTA+TGG	-	chr8.4:39526199-39526218	MS.gene64981:CDS	35.0%
!!	CAGGTTTTAGTGTAAGAAAG+GGG	-	chr8.4:39525490-39525509	MS.gene64981:CDS	35.0%
	AACATTACGGCATGCATCTA+CGG	-	chr8.4:39526739-39526758	MS.gene64981:intron	40.0%
	ACCATCTCTCCAAAAGACAT+TGG	+	chr8.4:39526000-39526019	None:intergenic	40.0%
	AGAAGACCGCATAAAGTCTT+TGG	-	chr8.4:39525782-39525801	MS.gene64981:CDS	40.0%
	AGCAAGAATGTATTCTCTGC+TGG	-	chr8.4:39526530-39526549	MS.gene64981:intron	40.0%
	AGGCATGTGCTCATAAATCA+CGG	+	chr8.4:39527068-39527087	None:intergenic	40.0%
	ATGAGAGAACCCAAATGTGA+AGG	+	chr8.4:39526344-39526363	None:intergenic	40.0%
	ATTTATGAGCACATGCCTAG+GGG	-	chr8.4:39527070-39527089	MS.gene64981:CDS	40.0%
	CACTGGCAAAATGTCATGTT+TGG	-	chr8.4:39526128-39526147	MS.gene64981:CDS	40.0%
	CATTGGTCAAACGTGATTCA+TGG	+	chr8.4:39525983-39526002	None:intergenic	40.0%
	CTAGGCTCATCAGTTTCAAT+TGG	+	chr8.4:39525396-39525415	None:intergenic	40.0%
	CTTGACTTTCCGAAACTAGA+TGG	+	chr8.4:39527183-39527202	None:intergenic	40.0%
	GATTTATGAGCACATGCCTA+GGG	-	chr8.4:39527069-39527088	MS.gene64981:CDS	40.0%
	GGTCAGATTTAATGTGACCA+AGG	-	chr8.4:39525653-39525672	MS.gene64981:CDS	40.0%
	TATAAGCAGTGCTCCACTTA+TGG	+	chr8.4:39526511-39526530	None:intergenic	40.0%
	TGATTTATGAGCACATGCCT+AGG	-	chr8.4:39527068-39527087	MS.gene64981:CDS	40.0%
	TGCCCATTGAATCAAACTTG+CGG	+	chr8.4:39526949-39526968	None:intergenic	40.0%
	TGCCGCAAGTTTGATTCAAT+GGG	-	chr8.4:39526944-39526963	MS.gene64981:CDS	40.0%
	TTATAAGCCACTTCACCATC+AGG	+	chr8.4:39525600-39525619	None:intergenic	40.0%
	TTGCCGCAAGTTTGATTCAA+TGG	-	chr8.4:39526943-39526962	MS.gene64981:CDS	40.0%
!	CAAGAGCATGCTTTCAAAAC+AGG	-	chr8.4:39525471-39525490	MS.gene64981:CDS	40.0%
!	CACGTTTGACCAATGTCTTT+TGG	-	chr8.4:39525988-39526007	MS.gene64981:CDS	40.0%
!	GTGATCAATGATGATGATGC+CGG	-	chr8.4:39527121-39527140	MS.gene64981:CDS	40.0%
!	TAACAAGAGGAGGTGTACTT+TGG	+	chr8.4:39526706-39526725	None:intergenic	40.0%
!!	ACCAATGTCTTTTGGAGAGA+TGG	-	chr8.4:39525996-39526015	MS.gene64981:CDS	40.0%
!!!	CTGTTTTGAAAGCATGCTCT+TGG	+	chr8.4:39525473-39525492	None:intergenic	40.0%
	AACTTTCCACACTCCTTCCT+TGG	+	chr8.4:39525673-39525692	None:intergenic	45.0%
	ACTTGATATTGGGGCTGAGA+GGG	-	chr8.4:39527237-39527256	MS.gene64981:CDS	45.0%
	ATTCCTCCTCAACCTCTATG+CGG	+	chr8.4:39526673-39526692	None:intergenic	45.0%
	CATGGCTAAAGCTATTGGAG+AGG	-	chr8.4:39526265-39526284	MS.gene64981:CDS	45.0%
	CCAGTCATGGCTAAAGCTAT+TGG	-	chr8.4:39526260-39526279	MS.gene64981:CDS	45.0%
	GAGTATCTTGAAGGAACAGG+TGG	-	chr8.4:39526797-39526816	MS.gene64981:intron	45.0%
	GGAAACATGCTTCAGACCAT+TGG	-	chr8.4:39527333-39527352	MS.gene64981:CDS	45.0%
	TACAGCTCATCATCCAGTCA+TGG	-	chr8.4:39526247-39526266	MS.gene64981:CDS	45.0%
	TACTTGATATTGGGGCTGAG+AGG	-	chr8.4:39527236-39527255	MS.gene64981:CDS	45.0%
	TGTACTCTCAATCCTTTGGC+AGG	+	chr8.4:39526564-39526583	None:intergenic	45.0%
!	CAATGAACCTGATGGTGAAG+TGG	-	chr8.4:39525590-39525609	MS.gene64981:CDS	45.0%
!!	CCAATAGCTTTAGCCATGAC+TGG	+	chr8.4:39526263-39526282	None:intergenic	45.0%
!!	TTGATTTGTGCCCCCTTTGT+TGG	-	chr8.4:39526095-39526114	MS.gene64981:CDS	45.0%
	ATGTGACCAAGGAAGGAGTG+TGG	-	chr8.4:39525664-39525683	MS.gene64981:CDS	50.0%
	CTGGTATCAAGTCCTGCCAA+AGG	-	chr8.4:39526549-39526568	MS.gene64981:intron	50.0%
	GAATCTTCTCCCATACCCCT+AGG	+	chr8.4:39527088-39527107	None:intergenic	50.0%
	GAAAAAGTGGCGCCGCATAG+AGG	-	chr8.4:39526658-39526677	MS.gene64981:intron	55.0%
	TGAGCACATGCCTAGGGGTA+TGG	-	chr8.4:39527075-39527094	MS.gene64981:CDS	55.0%
!	GAGAGGGTGCGAAAAGGTGT+TGG	-	chr8.4:39527253-39527272	MS.gene64981:CDS	55.0%
!	GAGCACATGCCTAGGGGTAT+GGG	-	chr8.4:39527076-39527095	MS.gene64981:CDS	55.0%
!!	GGTGCGAAAAGGTGTTGGCA+AGG	-	chr8.4:39527258-39527277	MS.gene64981:CDS	55.0%
	GCGCCGCATAGAGGTTGAGG+AGG	-	chr8.4:39526667-39526686	MS.gene64981:intron	65.0%
	GTGGCGCCGCATAGAGGTTG+AGG	-	chr8.4:39526664-39526683	MS.gene64981:intron	65.0%
!	GGGGCTGAGAGGGTGCGAAA+AGG	-	chr8.4:39527247-39527266	MS.gene64981:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	39525372	39527360	39525372	ID=MS.gene64981
chr8.4	mRNA	39525372	39527360	39525372	ID=MS.gene64981.t1;Parent=MS.gene64981
chr8.4	exon	39526799	39527360	39526799	ID=MS.gene64981.t1.exon1;Parent=MS.gene64981.t1
chr8.4	CDS	39526799	39527360	39526799	ID=cds.MS.gene64981.t1;Parent=MS.gene64981.t1
chr8.4	exon	39525372	39526312	39525372	ID=MS.gene64981.t1.exon2;Parent=MS.gene64981.t1
chr8.4	CDS	39525372	39526312	39525372	ID=cds.MS.gene64981.t1;Parent=MS.gene64981.t1

Gene Sequence

>MS.gene64981

ATGGAGATAAATGAATGTCAACCAATTGAAACTGATGAGCCTAGAGATATTTATCTTGGTCAAGTTGTAAATAGCAAAGATGAAGCTTATGACTTATACCAAGAGCATGCTTTCAAAACAGGTTTTAGTGTAAGAAAGGGGAAGGAGTTATATTACGATAATGAGAAAAAGAAAACACGTTTGAAGGACTTTTATTGTTCCAAACAAGGATTTAAAAACAATGAACCTGATGGTGAAGTGGCTTATAAAAGAGCAGATTCAAGAACAAATTGCTTAGCTATGGTCAGATTTAATGTGACCAAGGAAGGAGTGTGGAAAGTTACCAAGTTGATATTGGATCACAATCATGAATTTGTACCACTTCAGCAAAGATATTTGTTGCGTTCTATGAGAAATATGTCAAATCTCAAAGAAGACCGCATAAAGTCTTTGGTGAATGATGCCATTAGAGTTACAAATAGTGGGGGTGTAATGTTGAAAGATATGCATAATTATGTCTCCACTGGAAAGTTGAAATTTATCGAAGCCGGAGATGCTCAATCTTTATTGAATCACCTACAAAGTAAACAAGCACAAGATTCCATGTTCTATTACAGTGTACAGTTAGACCATGAATCACGTTTGACCAATGTCTTTTGGAGAGATGGTAAATCTGTAGTTGATTATCATTGCTTTGGGGATGTTGTGATTTTTGACACTACATATCGTAGTAATAAATACAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCACTGGCAAAATGTCATGTTTGGTTGTGCCTTGTTATTTGATGAAAGTGAAGTTTCTTTTGCTTGGTTGTTCAAAGCATTTTTGGAGAGTATGGGAAACCAACAACCAAAAACAATCTTTACAGCTCATCATCCAGTCATGGCTAAAGCTATTGGAGAGGTAATGCCAAATGCATGTCATCGTTTATGTTTATGGCACATAGCTAAGAATGCTCCTTCACATTTGGGTTCTCTCATTTCTGATCAAAAATTTCAAAACTTATTTAGTAAATGCATGGAAGGTTGTGATTCAGAAGAAGAATTTCAAAGAACTTGGGATGAGATGATGAATGTGTATAAGCTTCAAGATCATCAATGGTTGATCAATATGTATGAAATTCGCCATAAGTGGAGCACTGCTTATAGCAAGAATGTATTCTCTGCTGGTATCAAGTCCTGCCAAAGGATTGAGAGTACAAACAATGTGTTGGATGAGATTAGAGAGAAAACGACAACTCTCACACAATTTTTAGTAGCATTTGAGAAGATGTTGAAAAAGTGGCGCCGCATAGAGGTTGAGGAGGAATTCAAAAACAGCCAAAGTACACCTCCTCTTGTTATAAATATTAGTGAAACATTACGGCATGCATCTACGGTATATACTCACAAAGTCTTCAATATTTTTCTAAATGAGTATCTTGAAGGAACAGGTGGAAGCACTTCTATAGAGATTAGTCAATCTAATAATCTGTCAAATCATGAAGTCATGTTGAACCATAAGCCTAATAAAAAATATGTGGTGACATTTGACTCTTCCAATATGAAGATTAATTGTAGTTGCCGCAAGTTTGATTCAATGGGCATTCTTTGTAGTCATGCTTTGCGGATTTATAACATTAAAGGTATTTTAAGAATACCTGACCAATACTTCTTAAAAAGATGGTCAAAAAATGCAAGGTCCGTGATTTATGAGCACATGCCTAGGGGTATGGGAGAAGATTCTACCTCCATTTCAGTGATCAATGATGATGATGCCGGTATTCTTTATCGCAATGCTATTATGAAGTCATTCTACCATCTAGTTTCGGAAAGTCAAGACAGCAAAGAAGCTCAAAATATTATGTGGAAATTACTTGATATTGGGGCTGAGAGGGTGCGAAAAGGTGTTGGCAAGGCCAATTTAAATTCAGATGTAGAAACAATGGAGACAAATGTCAATGAAAATGAGGAAACATGCTTCAGACCATTGGTCTGA

Protein sequence

>MS.gene64981.t1

MEINECQPIETDEPRDIYLGQVVNSKDEAYDLYQEHAFKTGFSVRKGKELYYDNEKKKTRLKDFYCSKQGFKNNEPDGEVAYKRADSRTNCLAMVRFNVTKEGVWKVTKLILDHNHEFVPLQQRYLLRSMRNMSNLKEDRIKSLVNDAIRVTNSGGVMLKDMHNYVSTGKLKFIEAGDAQSLLNHLQKEEFQRTWDEMMNVYKLQDHQWLINMYEIRHKWSTAYSKNVFSAGIKSCQRIESTNNVLDEIREKTTTLTQFLVAFEKMLKKWRRIEVEEEFKNSQSTPPLVINISETLRHASTVYTHKVFNIFLNEYLEGTGGSTSIEISQSNNLSNHEVMLNHKPNKKYVVTFDSSNMKINCSCRKFDSMGILCSHALRIYNIKGILRIPDQYFLKRWSKNARSVIYEHMPRGMGEDSTSISVINDDDAGILYRNAIMKSFYHLVSESQDSKEAQNIMWKLLDIGAERVRKGVGKANLNSDVETMETNVNENEETCFRPLV