Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66700.t1 | XP_024636344.1 | 88 | 882 | 86 | 4 | 1 | 877 | 1 | 867 | 0.00E+00 | 1558.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66700.t1 | Q9FQ03 | 46.1 | 842 | 328 | 16 | 1 | 734 | 1 | 824 | 3.4e-190 | 666.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66700.t1 | G7JH90 | 86.8 | 879 | 81 | 4 | 1 | 877 | 1 | 846 | 0.0e+00 | 1525.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene66700 | 0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene66700 | 0.859392 | 4.27E-63 | -1.69E-46 |
| MS.gene049404 | MS.gene66700 | 0.810049 | 1.40E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene66700 | 0.832008 | 1.21E-55 | -1.69E-46 |
| MS.gene050156 | MS.gene66700 | 0.822497 | 2.30E-53 | -1.69E-46 |
| MS.gene050221 | MS.gene66700 | 0.833852 | 4.20E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene66700 | 0.833913 | 4.06E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene66700 | 0.83469 | 2.59E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene66700 | 0.828192 | 1.03E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene66700 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene05125 | MS.gene66700 | 0.804181 | 2.44E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene66700 | 0.854174 | 1.47E-61 | -1.69E-46 |
| MS.gene051332 | MS.gene66700 | 0.816237 | 6.13E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene66700 | 0.850452 | 1.68E-60 | -1.69E-46 |
| MS.gene051800 | MS.gene66700 | 0.829812 | 4.18E-55 | -1.69E-46 |
| MS.gene052037 | MS.gene66700 | 0.806822 | 6.82E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene66700 | 0.824277 | 8.81E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene66700 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene66700 | 0.826226 | 3.05E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene66700 | 0.819131 | 1.36E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene66700 | 0.816838 | 4.50E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene66700 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene66700 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene053296 | MS.gene66700 | 0.802615 | 5.16E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene66700 | 0.830667 | 2.58E-55 | -1.69E-46 |
| MS.gene053998 | MS.gene66700 | 0.819735 | 9.93E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene66700 | 0.803379 | 3.59E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene66700 | 0.833269 | 5.88E-56 | -1.69E-46 |
| MS.gene055464 | MS.gene66700 | 0.821361 | 4.21E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene66700 | 0.804248 | 2.37E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene66700 | 0.82023 | 7.65E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene66700 | 0.808951 | 2.41E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene66700 | 0.841915 | 3.56E-58 | -1.69E-46 |
| MS.gene056162 | MS.gene66700 | 0.814279 | 1.67E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene66700 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene66700 | 0.822102 | 2.83E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene66700 | 0.816648 | 4.96E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene66700 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene66700 | 0.815645 | 8.32E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene66700 | 0.853404 | 2.44E-61 | -1.69E-46 |
| MS.gene057026 | MS.gene66700 | 0.80771 | 4.43E-50 | -1.69E-46 |
| MS.gene057132 | MS.gene66700 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene66700 | 0.800491 | 1.41E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene66700 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene66700 | 0.84154 | 4.47E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene66700 | 0.836235 | 1.05E-56 | -1.69E-46 |
| MS.gene058829 | MS.gene66700 | 0.834664 | 2.63E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene66700 | 0.812623 | 3.86E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene66700 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene66700 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene059272 | MS.gene66700 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene66700 | 0.830803 | 2.39E-55 | -1.69E-46 |
| MS.gene059634 | MS.gene66700 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene66700 | 0.818788 | 1.63E-52 | -1.69E-46 |
| MS.gene060312 | MS.gene66700 | 0.809504 | 1.83E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene66700 | 0.828493 | 8.72E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66700.t1 | MTR_4g051920 | 87.372 | 879 | 76 | 4 | 1 | 877 | 1 | 846 | 0.0 | 1568 |
| MS.gene66700.t1 | MTR_7g114570 | 42.839 | 803 | 303 | 18 | 1 | 732 | 1 | 718 | 0.0 | 579 |
| MS.gene66700.t1 | MTR_7g114570 | 42.680 | 806 | 311 | 19 | 1 | 732 | 1 | 729 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66700.t1 | AT1G75660 | 46.429 | 840 | 324 | 16 | 1 | 732 | 1 | 822 | 0.0 | 661 |
| MS.gene66700.t1 | AT5G42540 | 45.738 | 833 | 334 | 15 | 1 | 732 | 1 | 816 | 0.0 | 647 |
| MS.gene66700.t1 | AT5G42540 | 45.142 | 844 | 334 | 16 | 1 | 732 | 1 | 827 | 0.0 | 639 |
| MS.gene66700.t1 | AT1G54490 | 42.927 | 820 | 314 | 15 | 1 | 746 | 1 | 740 | 0.0 | 613 |
| MS.gene66700.t1 | AT1G54490 | 42.914 | 748 | 294 | 13 | 56 | 746 | 11 | 682 | 0.0 | 557 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACGAATTTCATCGTATT+TGG | 0.150872 | 4.3:+47877615 | None:intergenic |
| TCCATTTGCTTCGGACTTAA+AGG | 0.176185 | 4.3:-47874605 | MS.gene66700:CDS |
| AACACGGTTCACTGTTTATA+TGG | 0.203040 | 4.3:-47877067 | MS.gene66700:CDS |
| AGTCAGCATTATAATCGTTT+TGG | 0.237014 | 4.3:-47873212 | MS.gene66700:CDS |
| GCTCCTTTGTGAATTGATTC+TGG | 0.243447 | 4.3:+47872856 | None:intergenic |
| ATCTTCATTTGTTTCTTTGC+TGG | 0.261003 | 4.3:-47876287 | MS.gene66700:CDS |
| TCTGCCTTACTTGCCATCTT+TGG | 0.273671 | 4.3:-47876255 | MS.gene66700:CDS |
| GCCTCGCAAGCTATTGTATA+TGG | 0.302733 | 4.3:-47879820 | MS.gene66700:CDS |
| GCTGGTATTGGATGGGGTTC+AGG | 0.308029 | 4.3:-47872835 | MS.gene66700:CDS |
| CATTGATCGTCTTGTAACTA+TGG | 0.308198 | 4.3:-47879847 | MS.gene66700:CDS |
| CCACCAAAACTAGTTGAGTT+AGG | 0.311068 | 4.3:+47872904 | None:intergenic |
| TTATCTGATGCTAATGTTCC+TGG | 0.318479 | 4.3:-47877154 | MS.gene66700:CDS |
| ATCAATTGTGCATAGGCTTT+AGG | 0.320131 | 4.3:+47874386 | None:intergenic |
| GGATATCCTCTGATCCATTA+TGG | 0.339612 | 4.3:-47877329 | MS.gene66700:CDS |
| TTGTTGTTGCTATCATCATT+AGG | 0.343938 | 4.3:+47880009 | None:intergenic |
| CGAATTCCAACAGCTCATTT+AGG | 0.348865 | 4.3:-47872618 | MS.gene66700:CDS |
| CAACGTTCGCATGTGCCTTC+TGG | 0.350540 | 4.3:-47872703 | MS.gene66700:CDS |
| GACACTTCACATTCTTGTTT+AGG | 0.353004 | 4.3:+47877429 | None:intergenic |
| CATTTGAAGTGTTTGTGTTA+AGG | 0.354839 | 4.3:+47880088 | None:intergenic |
| TGTATGCAAACTTCCATATA+TGG | 0.356068 | 4.3:-47874063 | MS.gene66700:CDS |
| TTGAACCGCATTGGAGCATT+TGG | 0.362324 | 4.3:+47876500 | None:intergenic |
| GAAATTCAGTTGAAGTTGAT+AGG | 0.363011 | 4.3:-47873886 | MS.gene66700:CDS |
| ATGACAGTCCAAGCATTATA+AGG | 0.371121 | 4.3:+47876944 | None:intergenic |
| TTAATGTCTTCAAACACCTT+TGG | 0.379530 | 4.3:+47880111 | None:intergenic |
| CATGTTCGGCACCTCTTATC+TGG | 0.384581 | 4.3:-47873462 | MS.gene66700:CDS |
| ACCATAACACCCTTCCATAA+TGG | 0.385087 | 4.3:+47877315 | None:intergenic |
| CCATTTGCTTCGGACTTAAA+GGG | 0.386749 | 4.3:-47874604 | MS.gene66700:CDS |
| TAAGATCCTCCATGATCATT+AGG | 0.398845 | 4.3:+47872736 | None:intergenic |
| TTGAGAGTTATATTTCTTCA+AGG | 0.402191 | 4.3:-47877350 | MS.gene66700:CDS |
| AAGCTATTGTATATGGCTAT+TGG | 0.413300 | 4.3:-47879813 | MS.gene66700:intron |
| TGAGATAGAAATGAAGATAC+AGG | 0.417312 | 4.3:-47876360 | MS.gene66700:CDS |
| CACCAAAACTAGTTGAGTTA+GGG | 0.419048 | 4.3:+47872905 | None:intergenic |
| TAAACCGTCTAGTCCTTTGC+TGG | 0.424583 | 4.3:+47877644 | None:intergenic |
| CTTCCTCAGTCTCTCTTCCT+CGG | 0.425369 | 4.3:+47877482 | None:intergenic |
| TAGATAAAATTAGGAACTGT+TGG | 0.427627 | 4.3:-47875229 | MS.gene66700:CDS |
| ACTGAGGAAGGAATTTGAAA+TGG | 0.428253 | 4.3:-47877469 | MS.gene66700:CDS |
| TCCATTATGGAAGGGTGTTA+TGG | 0.432134 | 4.3:-47877316 | MS.gene66700:intron |
| TGCTCCTTCAACAACATTTG+TGG | 0.434639 | 4.3:-47879895 | MS.gene66700:CDS |
| GGTTCACTGTTTATATGGAT+TGG | 0.435103 | 4.3:-47877062 | MS.gene66700:intron |
| CATAAACAACCTAATGATCA+TGG | 0.436115 | 4.3:-47872745 | MS.gene66700:CDS |
| ATTCACAAAGGAGCTGGTAT+TGG | 0.439239 | 4.3:-47872847 | MS.gene66700:CDS |
| ATTGGATGGGGTTCAGGTAG+AGG | 0.441242 | 4.3:-47872829 | MS.gene66700:CDS |
| AAATGCTCCAATGCGGTTCA+AGG | 0.446020 | 4.3:-47876498 | MS.gene66700:intron |
| CCCTTTAAGTCCGAAGCAAA+TGG | 0.454665 | 4.3:+47874604 | None:intergenic |
| AGTTGAAGTTGATAGGTTGT+TGG | 0.457586 | 4.3:-47873879 | MS.gene66700:CDS |
| TGCTTCGGACTTAAAGGGCA+TGG | 0.458359 | 4.3:-47874599 | MS.gene66700:CDS |
| CCACTATGGTCCATTTGCTT+CGG | 0.459238 | 4.3:-47874614 | MS.gene66700:CDS |
| TGGTGTAAACCTTCCAGAAA+AGG | 0.459319 | 4.3:-47873442 | MS.gene66700:intron |
| TCATTAGGTTGTTTATGAAA+AGG | 0.459890 | 4.3:+47872751 | None:intergenic |
| CCACCAACATTGAGCTAAAA+CGG | 0.460173 | 4.3:-47875162 | MS.gene66700:CDS |
| TTTGCATATTTGGTTGTTGA+GGG | 0.461938 | 4.3:-47876390 | MS.gene66700:CDS |
| TATAAACAGTGAACCGTGTT+CGG | 0.463074 | 4.3:+47877070 | None:intergenic |
| AGTTGATCAAAAGGTAAGAA+TGG | 0.463553 | 4.3:+47874544 | None:intergenic |
| ACCGTGTTCGGATCATAATC+AGG | 0.465301 | 4.3:+47877082 | None:intergenic |
| ACACTTAAAAGTTGATCAAA+AGG | 0.465449 | 4.3:+47874535 | None:intergenic |
| TGCAGCTTCTCATTATAGTC+AGG | 0.471855 | 4.3:+47876524 | None:intergenic |
| ACTTCCACAAATGTTGTTGA+AGG | 0.478416 | 4.3:+47879891 | None:intergenic |
| ATATCCAAAGATGGCAAGTA+AGG | 0.478852 | 4.3:+47876251 | None:intergenic |
| TAAGTGTTCTCCCTCAAAAG+AGG | 0.480997 | 4.3:-47874519 | MS.gene66700:intron |
| ATAAAATTATGTCATTCATA+AGG | 0.481208 | 4.3:-47877120 | MS.gene66700:CDS |
| TAATCCATTCTTGAGTTCGC+TGG | 0.481878 | 4.3:+47874016 | None:intergenic |
| AATTAAACCTTGAACCGCAT+TGG | 0.483273 | 4.3:+47876491 | None:intergenic |
| CAGGAGTTGCTTCATGGACA+TGG | 0.488947 | 4.3:-47874890 | MS.gene66700:intron |
| ACAGCTCATTTAGGCCTCAA+TGG | 0.490917 | 4.3:-47872609 | MS.gene66700:CDS |
| TCGCATGTGCCTTCTGGTAG+AGG | 0.498657 | 4.3:-47872697 | MS.gene66700:CDS |
| CAAAGGAGCTGGTATTGGAT+GGG | 0.513467 | 4.3:-47872842 | MS.gene66700:CDS |
| AGGAAAGCGCTTCATGTGGC+AGG | 0.513892 | 4.3:-47874223 | MS.gene66700:intron |
| TGTTGCTATCATCATTAGGA+TGG | 0.516700 | 4.3:+47880013 | None:intergenic |
| TTTAGCAGCGACGGCATTGG+AGG | 0.516743 | 4.3:-47873663 | MS.gene66700:intron |
| GCTTCGGACTTAAAGGGCAT+GGG | 0.518549 | 4.3:-47874598 | MS.gene66700:CDS |
| AGCAAATGCATAAAAGAGAA+AGG | 0.519730 | 4.3:-47875451 | MS.gene66700:CDS |
| ATGCTAATGTTCCTGGAGAA+GGG | 0.520161 | 4.3:-47877147 | MS.gene66700:CDS |
| TTGAGGCCTAAATGAGCTGT+TGG | 0.520881 | 4.3:+47872612 | None:intergenic |
| TGCTGCATGAATTCTGTCCC+TGG | 0.521072 | 4.3:+47877387 | None:intergenic |
| GAAACCAGCGAACTCAAGAA+TGG | 0.521588 | 4.3:-47874020 | MS.gene66700:CDS |
| GATGCTAATGTTCCTGGAGA+AGG | 0.521838 | 4.3:-47877148 | MS.gene66700:CDS |
| ACCTCGTGAATATCCAAAGA+TGG | 0.523973 | 4.3:+47876242 | None:intergenic |
| GTCAAATACGAGCATCCTGC+TGG | 0.524098 | 4.3:-47873495 | MS.gene66700:CDS |
| AGCCTATGCACAATTGATGT+TGG | 0.525564 | 4.3:-47874381 | MS.gene66700:CDS |
| TCCTTTGAATCACTCCATTG+AGG | 0.527231 | 4.3:+47872595 | None:intergenic |
| TTGGATGGGGTTCAGGTAGA+GGG | 0.528433 | 4.3:-47872828 | MS.gene66700:CDS |
| ACAAAGGAGCTGGTATTGGA+TGG | 0.528593 | 4.3:-47872843 | MS.gene66700:CDS |
| ACAAGGTGGACACAAGCATA+AGG | 0.533115 | 4.3:-47873808 | MS.gene66700:intron |
| AAAGGCGACTTGTTTAAAAG+TGG | 0.535755 | 4.3:-47875433 | MS.gene66700:CDS |
| GAAGGTTTACACCAGATAAG+AGG | 0.537906 | 4.3:+47873451 | None:intergenic |
| GTACACTGAAGGATTGTTGT+GGG | 0.539897 | 4.3:-47874931 | MS.gene66700:CDS |
| GAATCAATTCACAAAGGAGC+TGG | 0.539955 | 4.3:-47872853 | MS.gene66700:CDS |
| GATGCTGACCTTATAATGCT+TGG | 0.541003 | 4.3:-47876952 | MS.gene66700:CDS |
| ACAGAATGCATGTGATTACA+TGG | 0.542418 | 4.3:-47875696 | MS.gene66700:CDS |
| CTGGTGGTACAAGTCATGTT+CGG | 0.544677 | 4.3:-47873476 | MS.gene66700:CDS |
| AGGAAGGAATTTGAAATGGA+AGG | 0.549315 | 4.3:-47877465 | MS.gene66700:CDS |
| ACCAAAACTAGTTGAGTTAG+GGG | 0.549416 | 4.3:+47872906 | None:intergenic |
| ATCCTCTGATCCATTATGGA+AGG | 0.552359 | 4.3:-47877325 | MS.gene66700:CDS |
| ACTTCGTCTTTGATCTTGAG+CGG | 0.552614 | 4.3:-47876325 | MS.gene66700:CDS |
| GCCTCAATGGAGTGATTCAA+AGG | 0.557141 | 4.3:-47872596 | MS.gene66700:CDS |
| TAACACAAACACTTCAAATG+TGG | 0.557233 | 4.3:-47880085 | MS.gene66700:CDS |
| ATTCGAACAATGTGTATGCA+TGG | 0.563839 | 4.3:-47872654 | MS.gene66700:CDS |
| ACATGACTTGTACCACCAGC+AGG | 0.569156 | 4.3:+47873480 | None:intergenic |
| CTCACTTAAATTAAACAAGG+TGG | 0.569573 | 4.3:-47873822 | MS.gene66700:CDS |
| GTGCCTTCTGGTAGAGGACG+AGG | 0.576409 | 4.3:-47872691 | MS.gene66700:CDS |
| CAGGTAGAGGGAAATCAGAA+AGG | 0.576545 | 4.3:-47872816 | MS.gene66700:CDS |
| AAAGGAGCTGGTATTGGATG+GGG | 0.579160 | 4.3:-47872841 | MS.gene66700:CDS |
| CCTTTGTGAATTGATTCTGG+AGG | 0.581542 | 4.3:+47872859 | None:intergenic |
| TGCTAATGTTCCTGGAGAAG+GGG | 0.588627 | 4.3:-47877146 | MS.gene66700:CDS |
| GCCATATACAATAGCTTGCG+AGG | 0.591780 | 4.3:+47879819 | None:intergenic |
| ATTCAAAGGATAAAAGTCGT+TGG | 0.593054 | 4.3:-47872582 | MS.gene66700:CDS |
| AGACTGAGGACAAACATTGT+CGG | 0.594878 | 4.3:+47875616 | None:intergenic |
| GGTCAAATAATCAAGACACT+TGG | 0.597825 | 4.3:-47872966 | MS.gene66700:CDS |
| GTTGATAGGTTGTTGGTCAG+CGG | 0.602504 | 4.3:-47873872 | MS.gene66700:CDS |
| GATTCAAATATTATAACACC+AGG | 0.602504 | 4.3:-47877405 | MS.gene66700:CDS |
| AGTACACTGAAGGATTGTTG+TGG | 0.604142 | 4.3:-47874932 | MS.gene66700:CDS |
| TTAGCAGCGACGGCATTGGA+GGG | 0.605881 | 4.3:-47873662 | MS.gene66700:intron |
| GCAAATGGACCATAGTGGTA+GGG | 0.606211 | 4.3:+47874619 | None:intergenic |
| TGTTGTTCTCAACACACTCG+TGG | 0.606281 | 4.3:+47873625 | None:intergenic |
| TCCTCTGATCCATTATGGAA+GGG | 0.606739 | 4.3:-47877324 | MS.gene66700:CDS |
| TAAACTTGGAGAATATCTTG+TGG | 0.609289 | 4.3:-47876088 | MS.gene66700:CDS |
| ATTCATGCAGCAACTTTCGA+AGG | 0.609533 | 4.3:-47877376 | MS.gene66700:CDS |
| CGAGGAAGAGAGACTGAGGA+AGG | 0.609831 | 4.3:-47877481 | MS.gene66700:CDS |
| ATCCAACATCAATTGTGCAT+AGG | 0.611572 | 4.3:+47874379 | None:intergenic |
| GAGCGAAAATGAACCAGCAA+AGG | 0.612334 | 4.3:-47877657 | MS.gene66700:CDS |
| ACATAAATGAGACGATATTG+TGG | 0.612573 | 4.3:-47873244 | MS.gene66700:CDS |
| ACCCTTCCATAATGGATCAG+AGG | 0.615223 | 4.3:+47877323 | None:intergenic |
| TGGATGAATTCAAACAGAGA+AGG | 0.615569 | 4.3:-47872946 | MS.gene66700:CDS |
| TTGCTCACTTAAATTAAACA+AGG | 0.615653 | 4.3:-47873825 | MS.gene66700:CDS |
| AGCAAATGGACCATAGTGGT+AGG | 0.618914 | 4.3:+47874618 | None:intergenic |
| CCGAAGCAAATGGACCATAG+TGG | 0.629001 | 4.3:+47874614 | None:intergenic |
| TCCTGATTATGATCCGAACA+CGG | 0.629375 | 4.3:-47877083 | MS.gene66700:CDS |
| CAACATTGAGCTAAAACGGA+AGG | 0.632099 | 4.3:-47875158 | MS.gene66700:CDS |
| GTTACTCAACAAATATCCAA+AGG | 0.635055 | 4.3:-47880127 | MS.gene66700:CDS |
| TGAACCAGCAAAGGACTAGA+CGG | 0.636674 | 4.3:-47877648 | MS.gene66700:CDS |
| TGGAGATTTCTTGACTGACA+AGG | 0.644849 | 4.3:-47875413 | MS.gene66700:intron |
| GCCATCTTTGGATATTCACG+AGG | 0.647327 | 4.3:-47876243 | MS.gene66700:intron |
| CTACCTCGTCCTCTACCAGA+AGG | 0.650269 | 4.3:+47872688 | None:intergenic |
| TAGGTTCAGAAGTACACTGA+AGG | 0.653526 | 4.3:-47874942 | MS.gene66700:CDS |
| TCATCATTAGGATGGAAACA+AGG | 0.654793 | 4.3:+47880021 | None:intergenic |
| AGTAACCATCTATAAAACGA+TGG | 0.659634 | 4.3:+47880144 | None:intergenic |
| TTTGTATTTATAGGAAGCCG+AGG | 0.659675 | 4.3:-47877499 | MS.gene66700:intron |
| ATATCTTGTGGACATAAACA+AGG | 0.669996 | 4.3:-47876076 | MS.gene66700:intron |
| TAGAAGGAAAGCGCTTCATG+TGG | 0.670368 | 4.3:-47874227 | MS.gene66700:CDS |
| AAATACGAGCATCCTGCTGG+TGG | 0.671206 | 4.3:-47873492 | MS.gene66700:CDS |
| AAGCCGAGGAAGAGAGACTG+AGG | 0.671391 | 4.3:-47877485 | MS.gene66700:CDS |
| CTTACTTCTTCATCAGACTG+AGG | 0.677507 | 4.3:+47875602 | None:intergenic |
| AAACAGTTAGGGGAGAAACA+TGG | 0.682040 | 4.3:-47875942 | MS.gene66700:intron |
| CCAAAACTAGTTGAGTTAGG+GGG | 0.684296 | 4.3:+47872907 | None:intergenic |
| CAGAAGGCACATGCGAACGT+TGG | 0.688305 | 4.3:+47872704 | None:intergenic |
| CTTCTGGTAGAGGACGAGGT+AGG | 0.693183 | 4.3:-47872687 | MS.gene66700:CDS |
| CCTCCAGAATCAATTCACAA+AGG | 0.701480 | 4.3:-47872859 | MS.gene66700:CDS |
| TGCAACCAAATGCTCCAATG+CGG | 0.710410 | 4.3:-47876505 | MS.gene66700:CDS |
| ATTCAAATATTATAACACCA+GGG | 0.720952 | 4.3:-47877404 | MS.gene66700:CDS |
| AAACAACCTAATGATCATGG+AGG | 0.725320 | 4.3:-47872742 | MS.gene66700:CDS |
| TCATTCATAAGGAAACAGCG+TGG | 0.793260 | 4.3:-47877109 | MS.gene66700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 47872579 | 47880175 | 47872579 | ID=MS.gene66700 |
| chr4.3 | mRNA | 47872579 | 47880175 | 47872579 | ID=MS.gene66700.t1;Parent=MS.gene66700 |
| chr4.3 | exon | 47880008 | 47880175 | 47880008 | ID=MS.gene66700.t1.exon1;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47880008 | 47880175 | 47880008 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47879814 | 47879919 | 47879814 | ID=MS.gene66700.t1.exon2;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47879814 | 47879919 | 47879814 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47877618 | 47877694 | 47877618 | ID=MS.gene66700.t1.exon3;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47877618 | 47877694 | 47877618 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47877317 | 47877508 | 47877317 | ID=MS.gene66700.t1.exon4;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47877317 | 47877508 | 47877317 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47877063 | 47877182 | 47877063 | ID=MS.gene66700.t1.exon5;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47877063 | 47877182 | 47877063 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47876912 | 47876974 | 47876912 | ID=MS.gene66700.t1.exon6;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47876912 | 47876974 | 47876912 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47876499 | 47876552 | 47876499 | ID=MS.gene66700.t1.exon7;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47876499 | 47876552 | 47876499 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47876244 | 47876414 | 47876244 | ID=MS.gene66700.t1.exon8;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47876244 | 47876414 | 47876244 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47876077 | 47876154 | 47876077 | ID=MS.gene66700.t1.exon9;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47876077 | 47876154 | 47876077 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47875809 | 47875958 | 47875809 | ID=MS.gene66700.t1.exon10;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47875809 | 47875958 | 47875809 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47875607 | 47875726 | 47875607 | ID=MS.gene66700.t1.exon11;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47875607 | 47875726 | 47875607 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47875414 | 47875509 | 47875414 | ID=MS.gene66700.t1.exon12;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47875414 | 47875509 | 47875414 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47875153 | 47875248 | 47875153 | ID=MS.gene66700.t1.exon13;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47875153 | 47875248 | 47875153 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47874891 | 47874961 | 47874891 | ID=MS.gene66700.t1.exon14;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47874891 | 47874961 | 47874891 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47874520 | 47874648 | 47874520 | ID=MS.gene66700.t1.exon15;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47874520 | 47874648 | 47874520 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47874345 | 47874421 | 47874345 | ID=MS.gene66700.t1.exon16;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47874345 | 47874421 | 47874345 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47874224 | 47874264 | 47874224 | ID=MS.gene66700.t1.exon17;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47874224 | 47874264 | 47874224 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47874013 | 47874087 | 47874013 | ID=MS.gene66700.t1.exon18;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47874013 | 47874087 | 47874013 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47873809 | 47873924 | 47873809 | ID=MS.gene66700.t1.exon19;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47873809 | 47873924 | 47873809 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47873606 | 47873677 | 47873606 | ID=MS.gene66700.t1.exon20;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47873606 | 47873677 | 47873606 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47873443 | 47873521 | 47873443 | ID=MS.gene66700.t1.exon21;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47873443 | 47873521 | 47873443 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47873209 | 47873282 | 47873209 | ID=MS.gene66700.t1.exon22;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47873209 | 47873282 | 47873209 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| chr4.3 | exon | 47872579 | 47872987 | 47872579 | ID=MS.gene66700.t1.exon23;Parent=MS.gene66700.t1 |
| chr4.3 | CDS | 47872579 | 47872987 | 47872579 | ID=cds.MS.gene66700.t1;Parent=MS.gene66700.t1 |
| Gene Sequence |
| Protein sequence |
