AlfalfaGEDB | MS.gene66939

M. sativa cultivar XinJiangDaYe / MS.gene66939

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02229.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66939.t1	XP_004502969.2	58.1	62	19	1	131	185	58	119	1.10E-09	73.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66939.t1	O65154	49.2	63	24	1	131	185	19	81	6.2e-09	62.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66939.t1	A0A1S2YDV6	58.1	62	19	1	131	185	21	82	8.1e-10	73.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene66939	0.826516	2.60E-54	-1.69E-46
MS.gene049159	MS.gene66939	0.84261	2.33E-58	-1.69E-46
MS.gene049254	MS.gene66939	0.813275	2.78E-51	-1.69E-46
MS.gene050559	MS.gene66939	0.812403	4.31E-51	-1.69E-46
MS.gene050561	MS.gene66939	0.821231	4.51E-53	-1.69E-46
MS.gene050562	MS.gene66939	0.812922	3.32E-51	-1.69E-46
MS.gene050844	MS.gene66939	0.82408	9.80E-54	-1.69E-46
MS.gene051247	MS.gene66939	0.80213	6.49E-49	-1.69E-46
MS.gene051279	MS.gene66939	0.814068	1.86E-51	-1.69E-46
MS.gene051710	MS.gene66939	0.801499	8.75E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66939.t1	MTR_3g096690	51.250	80	26	2	119	185	2	81	5.35e-16	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66939.t1	AT5G09250	47.692	65	26	1	131	187	19	83	7.14e-14	64.3
MS.gene66939.t1	AT5G09250	47.692	65	26	1	131	187	19	83	7.14e-14	64.3
MS.gene66939.t1	AT5G09250	49.206	63	24	1	131	185	19	81	1.18e-13	64.3
MS.gene66939.t1	AT5G09250	49.206	63	24	1	131	185	19	81	5.11e-13	63.2

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Find 50 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAGGTCTGGAACTGAAAA+GGG	0.449012	6.2:-21710176	MS.gene66939:CDS
AATCTTTATAGAGAAATGCC+TGG	0.524021	6.2:-21710539	None:intergenic
AGAAATGCCTGGAACTGAAA+AGG	0.469309	6.2:-21710528	None:intergenic
AGCATTGGAACGAAGGGATT+CGG	0.424874	6.2:-21709966	MS.gene66939:CDS
ATAGGTCTGGAACTGAAAAG+GGG	0.667488	6.2:-21710175	MS.gene66939:CDS
CAACTGAAAAGGAGAAGAAT+AGG	0.461723	6.2:-21710193	MS.gene66939:CDS
CAACTGAAAAGGAGAAGAAT+AGG	0.461723	6.2:-21710247	MS.gene66939:CDS
CAACTGAAAAGGAGAAGAAT+AGG	0.461723	6.2:-21710301	MS.gene66939:CDS
CAACTGAAAAGGAGAAGAAT+AGG	0.461723	6.2:-21710409	MS.gene66939:CDS
CGACGAAATCGTCGTATGTG+AGG	0.579073	6.2:-21710099	MS.gene66939:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGCGAATATTACTTAAAAGA+TGG	-	chr6.2:21710182-21710201	MS.gene66939:CDS	30.0%
TGATGAAATTCAAAAGCCTA+AGG	-	chr6.2:21710425-21710444	MS.gene66939:CDS	30.0%
AAAAAACCTTTGTCGTCCTT+AGG	+	chr6.2:21710444-21710463	None:intergenic	35.0%
AAGCAAAGACCTACCAAAAA+AGG	-	chr6.2:21710206-21710225	MS.gene66939:CDS	35.0%
ATGGAATAGCAAATGGACAT+TGG	-	chr6.2:21710316-21710335	MS.gene66939:CDS	35.0%
CAACTGAAAAGGAGAAGAAT+AGG	-	chr6.2:21709707-21709726	MS.gene66939:intron	35.0%
GAACTGAAAAGGAGAAGAAT+AGG	-	chr6.2:21709599-21709618	MS.gene66939:intron	35.0%
AGACTGAGCCTGGTAATAAA+GGG	+	chr6.2:21710525-21710544	None:intergenic	40.0%
AGCCTGGTAATAAAGGGAAA+GGG	+	chr6.2:21710519-21710538	None:intergenic	40.0%
GAAAAGGAGAAGAATAGGTC+TGG	-	chr6.2:21709604-21709623	MS.gene66939:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	21709592	21710546	21709592	ID=MS.gene66939
chr6.2	mRNA	21709592	21710546	21709592	ID=MS.gene66939.t1;Parent=MS.gene66939
chr6.2	exon	21710100	21710546	21710100	ID=MS.gene66939.t1.exon1;Parent=MS.gene66939.t1
chr6.2	CDS	21710100	21710546	21710100	ID=cds.MS.gene66939.t1;Parent=MS.gene66939.t1
chr6.2	exon	21709911	21710016	21709911	ID=MS.gene66939.t1.exon2;Parent=MS.gene66939.t1
chr6.2	CDS	21709911	21710016	21709911	ID=cds.MS.gene66939.t1;Parent=MS.gene66939.t1
chr6.2	exon	21709592	21709602	21709592	ID=MS.gene66939.t1.exon3;Parent=MS.gene66939.t1
chr6.2	CDS	21709592	21709602	21709592	ID=cds.MS.gene66939.t1;Parent=MS.gene66939.t1

Gene Sequence

>MS.gene66939

ATGCCTGGAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGGAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGCAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGGAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGCAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGCAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGAGAAGAAGAGGTCTGCAACTGAAAAGGAGAAGAATAGGTCTGGAACTGAAAAGGGGAAGAAGAGGAAAGAACTTACTGAAGCTCACGCATCTCCCAAAAAGACGGTCAACGACGAAATCGTCGTATGTGAGGTCGGTTCCTCAAAACCCCCAACTCCATTGCTTGGGTTTCTTTTTGCTCTTTTTATTTATTGATATTGATTTGTTTAACGCAGCTTGGGACAAAGAGGAAGGTTTCTGTGAAGCATTGGAACGAAGGGATTCGGATTGACATTCGCGAATATTACTTAAAAGATGGCAAGCAAAGACCTACCAAAAAAGGTATTTCAATTCATTTTCGTTGTTTATGAAATGTTGTTATAATGGGTTGTTTCCTTATCTTTATATAAAGTGATTGATGAAATGTTTAATGGAATAGCAAATGGACATTGGACCTGATTTTGTTTATCAATTTTGAAAATTGTCACCAATTCAATTTTATGGAAATTTTGGTTAACACAACATTTTTTGCATCATGTTGATGAAATTCAAAAGCCTAAGGACGACAAAGGTTTTTTAAAAAAAGGTTTGTGAGCTGCATTTGTGTTGAAAATTTATGTTTGCTTGCTTCCCTTTCCCTTTATTACCAGGCTCAGTCTAG

Protein sequence

>MS.gene66939.t1

MPGTEKEKNRSGTEKEKKRSGTEKEKNRSGTEKEKKRSATEKEKNRSGTEKEKKRSGTEKEKNRSGTEKEKKRSATEKEKNRSGTEKEKKRSATEKEKNRSGTEKEKKRSATEKEKNRSGTEKGKKRKELTEAHASPKKTVNDEIVVCELGTKRKVSVKHWNEGIRIDIREYYLKDGKQRPTKKGSV