Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70122.t1 | RHN43232.1 | 94.9 | 316 | 13 | 1 | 1 | 313 | 1 | 316 | 1.20E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70122.t1 | Q9M2E2 | 40.1 | 297 | 144 | 7 | 39 | 312 | 9 | 294 | 3.0e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70122.t1 | A0A396GQ34 | 94.9 | 316 | 13 | 1 | 1 | 313 | 1 | 316 | 8.4e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019527 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene009163 | PPI |
| MS.gene70122 | MS.gene58268 | PPI |
| MS.gene70985 | MS.gene70122 | PPI |
| MS.gene58269 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene58347 | PPI |
| MS.gene47525 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene58343 | PPI |
| MS.gene019536 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene58348 | PPI |
| MS.gene70122 | MS.gene39579 | PPI |
| MS.gene70122 | MS.gene57560 | PPI |
| MS.gene019535 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene57559 | PPI |
| MS.gene70122 | MS.gene019530 | PPI |
| MS.gene019540 | MS.gene70122 | PPI |
| MS.gene26577 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene57563 | PPI |
| MS.gene58267 | MS.gene70122 | PPI |
| MS.gene58271 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene019531 | PPI |
| MS.gene019532 | MS.gene70122 | PPI |
| MS.gene58346 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene019537 | PPI |
| MS.gene70122 | MS.gene58344 | PPI |
| MS.gene70122 | MS.gene57562 | PPI |
| MS.gene57558 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene038616 | PPI |
| MS.gene58270 | MS.gene70122 | PPI |
| MS.gene58272 | MS.gene70122 | PPI |
| MS.gene70122 | MS.gene008719 | PPI |
| MS.gene70122 | MS.gene57564 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70122.t1 | MTR_8g096060 | 95.847 | 313 | 10 | 1 | 1 | 313 | 1 | 310 | 0.0 | 614 |
| MS.gene70122.t1 | MTR_3g098470 | 83.706 | 313 | 49 | 1 | 1 | 313 | 1 | 311 | 0.0 | 557 |
| MS.gene70122.t1 | MTR_1g031180 | 73.826 | 298 | 78 | 0 | 16 | 313 | 19 | 316 | 2.36e-171 | 478 |
| MS.gene70122.t1 | MTR_4g087460 | 41.017 | 295 | 156 | 8 | 31 | 313 | 16 | 304 | 1.11e-70 | 222 |
| MS.gene70122.t1 | MTR_8g032000 | 38.983 | 295 | 143 | 5 | 39 | 307 | 9 | 292 | 2.33e-65 | 207 |
| MS.gene70122.t1 | MTR_8g032010 | 38.384 | 297 | 146 | 6 | 35 | 305 | 5 | 290 | 2.59e-64 | 205 |
| MS.gene70122.t1 | MTR_8g031960 | 39.333 | 300 | 144 | 6 | 38 | 311 | 9 | 296 | 1.18e-63 | 203 |
| MS.gene70122.t1 | MTR_8g031980 | 38.284 | 303 | 149 | 6 | 36 | 312 | 6 | 296 | 2.47e-63 | 202 |
| MS.gene70122.t1 | MTR_8g031990 | 36.721 | 305 | 156 | 5 | 35 | 313 | 5 | 298 | 1.12e-62 | 201 |
| MS.gene70122.t1 | MTR_7g076660 | 39.792 | 289 | 149 | 6 | 39 | 313 | 9 | 286 | 2.93e-62 | 199 |
| MS.gene70122.t1 | MTR_7g076660 | 39.792 | 289 | 149 | 6 | 39 | 313 | 10 | 287 | 3.47e-62 | 199 |
| MS.gene70122.t1 | MTR_7g076655 | 40.138 | 289 | 148 | 6 | 39 | 313 | 9 | 286 | 7.49e-62 | 198 |
| MS.gene70122.t1 | MTR_8g031910 | 41.237 | 291 | 143 | 6 | 34 | 308 | 4 | 282 | 2.34e-61 | 197 |
| MS.gene70122.t1 | MTR_8g032020 | 37.748 | 302 | 150 | 6 | 39 | 313 | 10 | 300 | 3.11e-60 | 194 |
| MS.gene70122.t1 | MTR_3g079320 | 37.748 | 302 | 149 | 5 | 33 | 305 | 7 | 298 | 3.17e-60 | 194 |
| MS.gene70122.t1 | MTR_8g031940 | 40.136 | 294 | 138 | 8 | 39 | 305 | 9 | 291 | 7.88e-59 | 191 |
| MS.gene70122.t1 | MTR_5g062280 | 38.158 | 304 | 152 | 6 | 34 | 313 | 4 | 295 | 7.03e-58 | 188 |
| MS.gene70122.t1 | MTR_8g031630 | 37.874 | 301 | 149 | 9 | 39 | 313 | 9 | 297 | 1.26e-57 | 187 |
| MS.gene70122.t1 | MTR_8g031610 | 37.667 | 300 | 150 | 8 | 39 | 313 | 7 | 294 | 8.64e-57 | 185 |
| MS.gene70122.t1 | MTR_8g031900 | 35.135 | 296 | 160 | 5 | 39 | 313 | 9 | 293 | 1.71e-56 | 184 |
| MS.gene70122.t1 | MTR_8g031650 | 37.667 | 300 | 149 | 9 | 40 | 313 | 104 | 391 | 1.05e-55 | 186 |
| MS.gene70122.t1 | MTR_8g031650 | 37.984 | 129 | 69 | 4 | 179 | 302 | 2 | 124 | 7.31e-16 | 77.8 |
| MS.gene70122.t1 | MTR_8g031600 | 37.255 | 306 | 149 | 7 | 37 | 313 | 7 | 298 | 4.47e-55 | 181 |
| MS.gene70122.t1 | MTR_8g031650 | 37.667 | 300 | 149 | 9 | 40 | 313 | 270 | 557 | 2.09e-54 | 186 |
| MS.gene70122.t1 | MTR_8g031650 | 38.567 | 293 | 140 | 9 | 39 | 302 | 9 | 290 | 5.17e-53 | 182 |
| MS.gene70122.t1 | MTR_7g076660 | 38.235 | 272 | 143 | 6 | 56 | 313 | 2 | 262 | 1.05e-53 | 176 |
| MS.gene70122.t1 | MTR_7g076665 | 35.117 | 299 | 158 | 6 | 39 | 313 | 9 | 295 | 4.55e-49 | 166 |
| MS.gene70122.t1 | MTR_7g106800 | 35.816 | 282 | 132 | 7 | 39 | 313 | 11 | 250 | 1.42e-46 | 158 |
| MS.gene70122.t1 | MTR_8g031850 | 32.130 | 277 | 156 | 5 | 39 | 313 | 9 | 255 | 3.15e-43 | 149 |
| MS.gene70122.t1 | MTR_5g083430 | 36.224 | 196 | 113 | 4 | 118 | 313 | 1 | 184 | 9.41e-34 | 122 |
| MS.gene70122.t1 | MTR_8g032030 | 39.665 | 179 | 80 | 5 | 36 | 187 | 6 | 183 | 2.37e-31 | 117 |
| MS.gene70122.t1 | MTR_4g105310 | 27.211 | 294 | 156 | 11 | 39 | 310 | 51 | 308 | 2.95e-14 | 72.8 |
| MS.gene70122.t1 | MTR_3g077410 | 26.531 | 294 | 158 | 12 | 39 | 310 | 40 | 297 | 2.80e-13 | 69.7 |
| MS.gene70122.t1 | MTR_4g105310 | 28.926 | 242 | 129 | 8 | 39 | 273 | 51 | 256 | 5.02e-13 | 68.2 |
| MS.gene70122.t1 | MTR_3g068070 | 35.374 | 147 | 86 | 4 | 31 | 172 | 12 | 154 | 1.44e-12 | 67.0 |
| MS.gene70122.t1 | MTR_8g442750 | 31.973 | 147 | 93 | 2 | 35 | 174 | 15 | 161 | 1.64e-11 | 64.3 |
| MS.gene70122.t1 | MTR_7g063390 | 32.886 | 149 | 95 | 4 | 30 | 175 | 12 | 158 | 8.12e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70122.t1 | AT5G51030 | 70.607 | 313 | 92 | 0 | 1 | 313 | 2 | 314 | 9.83e-175 | 486 |
| MS.gene70122.t1 | AT5G61830 | 68.354 | 316 | 97 | 2 | 1 | 313 | 1 | 316 | 9.85e-161 | 451 |
| MS.gene70122.t1 | AT5G61830 | 68.354 | 316 | 97 | 2 | 1 | 313 | 1 | 316 | 9.85e-161 | 451 |
| MS.gene70122.t1 | AT3G59710 | 42.807 | 285 | 148 | 6 | 25 | 305 | 7 | 280 | 1.27e-76 | 236 |
| MS.gene70122.t1 | AT3G59710 | 42.908 | 282 | 146 | 6 | 28 | 305 | 39 | 309 | 2.55e-75 | 234 |
| MS.gene70122.t1 | AT3G59710 | 42.254 | 284 | 149 | 6 | 26 | 305 | 18 | 290 | 5.00e-74 | 230 |
| MS.gene70122.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 9 | 294 | 5.87e-62 | 199 |
| MS.gene70122.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 16 | 301 | 1.18e-61 | 198 |
| MS.gene70122.t1 | AT3G61220 | 40.741 | 297 | 142 | 8 | 39 | 312 | 40 | 325 | 2.62e-61 | 198 |
| MS.gene70122.t1 | AT2G24190 | 39.057 | 297 | 147 | 7 | 39 | 312 | 9 | 294 | 6.35e-61 | 196 |
| MS.gene70122.t1 | AT2G24190 | 39.057 | 297 | 147 | 7 | 39 | 312 | 14 | 299 | 8.44e-61 | 196 |
| MS.gene70122.t1 | AT1G01800 | 37.542 | 301 | 152 | 7 | 38 | 313 | 6 | 295 | 3.81e-57 | 186 |
| MS.gene70122.t1 | AT1G01800 | 37.705 | 183 | 103 | 3 | 131 | 313 | 89 | 260 | 4.07e-32 | 120 |
| MS.gene70122.t1 | AT5G50130 | 28.296 | 311 | 160 | 15 | 27 | 312 | 27 | 299 | 3.39e-19 | 87.0 |
| MS.gene70122.t1 | AT5G50130 | 29.054 | 296 | 148 | 15 | 41 | 312 | 8 | 265 | 1.98e-17 | 81.6 |
| MS.gene70122.t1 | AT5G50130 | 29.297 | 256 | 134 | 12 | 27 | 273 | 27 | 244 | 2.20e-17 | 80.5 |
| MS.gene70122.t1 | AT5G50130 | 28.956 | 297 | 148 | 15 | 41 | 312 | 8 | 266 | 2.71e-17 | 81.3 |
| MS.gene70122.t1 | AT5G50130 | 29.183 | 257 | 134 | 12 | 27 | 273 | 27 | 245 | 2.83e-17 | 80.5 |
| MS.gene70122.t1 | AT5G50130 | 29.297 | 256 | 134 | 12 | 27 | 273 | 27 | 244 | 1.23e-16 | 79.7 |
| MS.gene70122.t1 | AT5G50130 | 29.183 | 257 | 134 | 12 | 27 | 273 | 27 | 245 | 1.67e-16 | 79.3 |
| MS.gene70122.t1 | AT4G23420 | 29.352 | 293 | 145 | 11 | 39 | 307 | 49 | 303 | 1.98e-15 | 76.3 |
| MS.gene70122.t1 | AT4G23420 | 29.010 | 293 | 146 | 11 | 39 | 307 | 32 | 286 | 5.67e-15 | 74.7 |
| MS.gene70122.t1 | AT4G23420 | 29.010 | 293 | 146 | 11 | 39 | 307 | 32 | 286 | 5.67e-15 | 74.7 |
| MS.gene70122.t1 | AT5G50130 | 30.165 | 242 | 122 | 12 | 41 | 273 | 8 | 211 | 1.30e-14 | 73.2 |
| MS.gene70122.t1 | AT5G50130 | 30.041 | 243 | 122 | 12 | 41 | 273 | 8 | 212 | 1.92e-14 | 72.8 |
| MS.gene70122.t1 | AT4G23430 | 26.621 | 293 | 151 | 11 | 39 | 307 | 32 | 284 | 3.42e-12 | 66.6 |
| MS.gene70122.t1 | AT4G23430 | 27.304 | 293 | 151 | 11 | 39 | 307 | 32 | 286 | 3.70e-12 | 66.6 |
| MS.gene70122.t1 | AT4G23420 | 35.374 | 147 | 82 | 4 | 39 | 176 | 32 | 174 | 1.84e-11 | 63.9 |
| MS.gene70122.t1 | AT4G23420 | 29.555 | 247 | 137 | 10 | 39 | 261 | 32 | 265 | 1.93e-11 | 63.9 |
| MS.gene70122.t1 | AT2G29350 | 30.233 | 172 | 108 | 3 | 28 | 187 | 9 | 180 | 5.84e-11 | 62.0 |
| MS.gene70122.t1 | AT2G29350 | 30.769 | 169 | 105 | 3 | 28 | 184 | 9 | 177 | 6.46e-11 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGGATTAATTTCAATTT+TGG | 0.065690 | 4.1:-7233052 | MS.gene70122:CDS |
| GTTATTGATACAAATTATTT+TGG | 0.142059 | 4.1:-7232998 | MS.gene70122:CDS |
| TAATGCTTATACAAGATTTA+TGG | 0.146212 | 4.1:-7232539 | MS.gene70122:CDS |
| TAATTGCTTGTTCAGGAATA+AGG | 0.220393 | 4.1:+7232377 | None:intergenic |
| CCAATTCTCTGAGTGGTTAA+AGG | 0.248625 | 4.1:-7233238 | MS.gene70122:CDS |
| GCAGCGGAAGCCTTCATTAA+TGG | 0.259600 | 4.1:+7232947 | None:intergenic |
| CTATGGTGGCTTAAATATTC+TGG | 0.279719 | 4.1:-7233211 | MS.gene70122:intron |
| CCTTTAACCACTCAGAGAAT+TGG | 0.295244 | 4.1:+7233238 | None:intergenic |
| ATTCCTGAACAAGCAATTAC+AGG | 0.309492 | 4.1:-7232373 | MS.gene70122:CDS |
| CGTATATAGGTGGTGGTCTA+AGG | 0.312809 | 4.1:-7233457 | MS.gene70122:intron |
| ACCGGTGGAAATAGAGGAAT+TGG | 0.315043 | 4.1:-7233417 | MS.gene70122:CDS |
| GTTGAGGATGGTGCTGATAC+TGG | 0.341232 | 4.1:-7232412 | MS.gene70122:CDS |
| TTTCCTGTAATTGCTTGTTC+AGG | 0.345287 | 4.1:+7232370 | None:intergenic |
| GAAACAATTGCTGTGGTTAC+CGG | 0.352211 | 4.1:-7233435 | MS.gene70122:CDS |
| TCGCGTCTAGGTCGACTAAA+TGG | 0.361109 | 4.1:-7232899 | MS.gene70122:CDS |
| TGTTGGCGTTGAATCAATTA+AGG | 0.363055 | 4.1:-7233328 | MS.gene70122:CDS |
| AACCTTTGGTGATCAGAATA+AGG | 0.364854 | 4.1:+7234011 | None:intergenic |
| CATAGCTTCAATCATACGTT+TGG | 0.371958 | 4.1:+7232973 | None:intergenic |
| TGGGTTAAAACAGCTCTAAC+AGG | 0.375689 | 4.1:-7232454 | MS.gene70122:CDS |
| CTTTAACCACTCAGAGAATT+GGG | 0.379720 | 4.1:+7233239 | None:intergenic |
| AATTGCTTGTTCAGGAATAA+GGG | 0.408591 | 4.1:+7232378 | None:intergenic |
| TAATTGTTATTGTCCTGGTT+GGG | 0.411270 | 4.1:-7232473 | MS.gene70122:CDS |
| ATGGTGCTGATACTGGAGTT+TGG | 0.414592 | 4.1:-7232405 | MS.gene70122:CDS |
| TGTATTAATTGTTATTGTCC+TGG | 0.437312 | 4.1:-7232478 | MS.gene70122:CDS |
| TTAATGAAGGCTTCCGCTGC+TGG | 0.440633 | 4.1:-7232944 | MS.gene70122:CDS |
| AGAGGATGGAACTTGGAAAT+CGG | 0.442067 | 4.1:-7232611 | MS.gene70122:CDS |
| TCAAGACAACTTGCTGATCA+TGG | 0.448076 | 4.1:-7233384 | MS.gene70122:CDS |
| GAGTGGTTAAAGGAAAACTA+TGG | 0.450433 | 4.1:-7233228 | MS.gene70122:CDS |
| ATCAAGTAGAGGATGGAACT+TGG | 0.475460 | 4.1:-7232618 | MS.gene70122:CDS |
| AGCTATGATTCCATTAATGA+AGG | 0.476938 | 4.1:-7232957 | MS.gene70122:CDS |
| TTAATTGTTATTGTCCTGGT+TGG | 0.477713 | 4.1:-7232474 | MS.gene70122:CDS |
| GAGGATGGAACTTGGAAATC+GGG | 0.486517 | 4.1:-7232610 | MS.gene70122:CDS |
| TTCAGTTGAAAATGCTCATA+CGG | 0.503882 | 4.1:-7233020 | MS.gene70122:CDS |
| CTTTCAGAGGAACTTATTGA+CGG | 0.507419 | 4.1:-7232661 | MS.gene70122:CDS |
| TATTTGCAGGTAAACAATGC+AGG | 0.514024 | 4.1:-7233070 | MS.gene70122:intron |
| GTAAATGTTAGCTCGCGTCT+AGG | 0.519334 | 4.1:-7232911 | MS.gene70122:CDS |
| CCGGTGGAAATAGAGGAATT+GGG | 0.523137 | 4.1:-7233416 | MS.gene70122:CDS |
| ACAGCTCTAACAGGTTATGC+AGG | 0.530819 | 4.1:-7232445 | MS.gene70122:CDS |
| TTCCTTATTCTGATCACCAA+AGG | 0.539751 | 4.1:-7234013 | MS.gene70122:intron |
| CCCAATTCCTCTATTTCCAC+CGG | 0.540422 | 4.1:+7233416 | None:intergenic |
| GAGTAGTCGGTAAATATTCG+AGG | 0.558560 | 4.1:+7232580 | None:intergenic |
| TTTCTACATCAAGTAGAGGA+TGG | 0.561046 | 4.1:-7232625 | MS.gene70122:CDS |
| GAACTTGGAAATCGGGAGGA+TGG | 0.561877 | 4.1:-7232603 | MS.gene70122:CDS |
| TCAATTAAGGTCTTGCAAGA+AGG | 0.563494 | 4.1:-7233315 | MS.gene70122:CDS |
| TGCAGGAAGTGTCTCAGTTG+AGG | 0.575602 | 4.1:-7232428 | MS.gene70122:CDS |
| ATTTGCAGGTAAACAATGCA+GGG | 0.577061 | 4.1:-7233069 | MS.gene70122:intron |
| GTGGTTACCGGTGGAAATAG+AGG | 0.582403 | 4.1:-7233423 | MS.gene70122:CDS |
| TAGTTTCGACAACGAGTAGT+CGG | 0.587214 | 4.1:+7232567 | None:intergenic |
| CCACTCAGAGAATTGGGTGA+TGG | 0.590667 | 4.1:+7233245 | None:intergenic |
| ATGAAGGCTTCCGCTGCTGG+TGG | 0.593984 | 4.1:-7232941 | MS.gene70122:CDS |
| ATTAAGGTCTTGCAAGAAGG+TGG | 0.604917 | 4.1:-7233312 | MS.gene70122:CDS |
| TACAATACGACCACCAGCAG+CGG | 0.610026 | 4.1:+7232931 | None:intergenic |
| AAACTTTCAGATAGACCTGA+GGG | 0.619922 | 4.1:-7232511 | MS.gene70122:CDS |
| ACAACAAGAGATGCTAGTGT+TGG | 0.621330 | 4.1:-7233345 | MS.gene70122:CDS |
| GTCTAAGGAAACAATTGCTG+TGG | 0.624623 | 4.1:-7233442 | MS.gene70122:CDS |
| CAATGTGGATAATCTTTCAG+AGG | 0.637147 | 4.1:-7232674 | MS.gene70122:CDS |
| ACAATTGCTGTGGTTACCGG+TGG | 0.637799 | 4.1:-7233432 | MS.gene70122:CDS |
| GGAAGTGTCTCAGTTGAGGA+TGG | 0.651463 | 4.1:-7232424 | MS.gene70122:CDS |
| TTGGTGATCAGAATAAGGAA+TGG | 0.653400 | 4.1:+7234016 | None:intergenic |
| GATGGAACTTGGAAATCGGG+AGG | 0.664292 | 4.1:-7232607 | MS.gene70122:CDS |
| CCATCACCCAATTCTCTGAG+TGG | 0.664499 | 4.1:-7233245 | MS.gene70122:CDS |
| TGGTTAAAGGAAAACTATGG+TGG | 0.666602 | 4.1:-7233225 | MS.gene70122:CDS |
| GCAAGAAGGTGGTCTCGATG+TGG | 0.670613 | 4.1:-7233301 | MS.gene70122:CDS |
| GAAACTTTCAGATAGACCTG+AGG | 0.686755 | 4.1:-7232512 | MS.gene70122:CDS |
| GAGAGAGCAATTAAGCAATG+TGG | 0.690143 | 4.1:-7232689 | MS.gene70122:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATCATTTATTGA+TGG | - | chr4.1:7232873-7232892 | MS.gene70122:intron | 10.0% |
| !!! | CATGTGTTAAATTTAATTTT+GGG | - | chr4.1:7232927-7232946 | MS.gene70122:CDS | 15.0% |
| !!! | GTTATTGATACAAATTATTT+TGG | - | chr4.1:7233421-7233440 | MS.gene70122:CDS | 15.0% |
| !!! | TGTTATTTCATCTTATAATT+AGG | - | chr4.1:7232451-7232470 | MS.gene70122:CDS | 15.0% |
| !! | ATAATGTATCATATATTTGC+AGG | - | chr4.1:7233336-7233355 | MS.gene70122:CDS | 20.0% |
| !! | ATCATTTATTGATGGAATTA+AGG | - | chr4.1:7232881-7232900 | MS.gene70122:intron | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | + | chr4.1:7232628-7232647 | None:intergenic | 20.0% |
| !! | CTATATAATTAAGCGTATAA+TGG | - | chr4.1:7232743-7232762 | MS.gene70122:intron | 20.0% |
| !! | TAATGCTTATACAAGATTTA+TGG | - | chr4.1:7233880-7233899 | MS.gene70122:intron | 20.0% |
| !!! | AATTTGCTTATAATAATGAC+CGG | + | chr4.1:7232555-7232574 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTTGACTTTT+AGG | - | chr4.1:7232564-7232583 | MS.gene70122:CDS | 20.0% |
| !!! | CGCTTAATTATATAGTTTTT+AGG | + | chr4.1:7232738-7232757 | None:intergenic | 20.0% |
| !!! | GCATGTGTTAAATTTAATTT+TGG | - | chr4.1:7232926-7232945 | MS.gene70122:CDS | 20.0% |
| ! | AATACATATACGTATATAGG+TGG | - | chr4.1:7232952-7232971 | MS.gene70122:CDS | 25.0% |
| ! | ATGAATAATGTTTCAGAGAT+TGG | - | chr4.1:7233694-7233713 | MS.gene70122:intron | 25.0% |
| ! | GCAAGTTTATTAAGCAAATA+TGG | - | chr4.1:7233230-7233249 | MS.gene70122:CDS | 25.0% |
| ! | GCTAATACATATACGTATAT+AGG | - | chr4.1:7232949-7232968 | MS.gene70122:CDS | 25.0% |
| ! | TAGAAATTAAATGCAACCTT+TGG | + | chr4.1:7232425-7232444 | None:intergenic | 25.0% |
| ! | TATTCAATAAATGATGCATG+TGG | - | chr4.1:7232589-7232608 | MS.gene70122:CDS | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr4.1:7232663-7232682 | MS.gene70122:CDS | 25.0% |
| !! | AGTAGTTTAATAAGAGGTTT+TGG | - | chr4.1:7232690-7232709 | MS.gene70122:CDS | 25.0% |
| !! | CAGGGATTAATTTCAATTTT+GGG | - | chr4.1:7233368-7233387 | MS.gene70122:CDS | 25.0% |
| !! | TAATTTTCTACATCAAGTAG+AGG | - | chr4.1:7233790-7233809 | MS.gene70122:intron | 25.0% |
| !! | TGTATTAATTGTTATTGTCC+TGG | - | chr4.1:7233941-7233960 | MS.gene70122:intron | 25.0% |
| !!! | AATAGTTAACCTTTTGAGTT+TGG | - | chr4.1:7232782-7232801 | MS.gene70122:intron | 25.0% |
| !!! | ATAGTTAACCTTTTGAGTTT+GGG | - | chr4.1:7232783-7232802 | MS.gene70122:intron | 25.0% |
| AATTGCTTGTTCAGGAATAA+GGG | + | chr4.1:7234044-7234063 | None:intergenic | 30.0% | |
| ACGAGTTTAATTATGTCACA+CGG | - | chr4.1:7233568-7233587 | MS.gene70122:intron | 30.0% | |
| AGCTATGATTCCATTAATGA+AGG | - | chr4.1:7233462-7233481 | MS.gene70122:intron | 30.0% | |
| TAATTGCTTGTTCAGGAATA+AGG | + | chr4.1:7234045-7234064 | None:intergenic | 30.0% | |
| TTCAGTTGAAAATGCTCATA+CGG | - | chr4.1:7233399-7233418 | MS.gene70122:CDS | 30.0% | |
| ! | GCAGGGATTAATTTCAATTT+TGG | - | chr4.1:7233367-7233386 | MS.gene70122:CDS | 30.0% |
| ! | TAATTGTTATTGTCCTGGTT+GGG | - | chr4.1:7233946-7233965 | MS.gene70122:intron | 30.0% |
| ! | TCTAAAGTTGCACATATGAT+TGG | + | chr4.1:7233631-7233650 | None:intergenic | 30.0% |
| ! | TTAATTGTTATTGTCCTGGT+TGG | - | chr4.1:7233945-7233964 | MS.gene70122:intron | 30.0% |
| AAACTTTCAGATAGACCTGA+GGG | - | chr4.1:7233908-7233927 | MS.gene70122:intron | 35.0% | |
| ACATATACGTATATAGGTGG+TGG | - | chr4.1:7232955-7232974 | MS.gene70122:CDS | 35.0% | |
| ATTCCTGAACAAGCAATTAC+AGG | - | chr4.1:7234046-7234065 | MS.gene70122:CDS | 35.0% | |
| ATTTGCAGGTAAACAATGCA+GGG | - | chr4.1:7233350-7233369 | MS.gene70122:CDS | 35.0% | |
| CAATGTGGATAATCTTTCAG+AGG | - | chr4.1:7233745-7233764 | MS.gene70122:intron | 35.0% | |
| CATAGCTTCAATCATACGTT+TGG | + | chr4.1:7233449-7233468 | None:intergenic | 35.0% | |
| CTATGGTGGCTTAAATATTC+TGG | - | chr4.1:7233208-7233227 | MS.gene70122:intron | 35.0% | |
| CTTTAACCACTCAGAGAATT+GGG | + | chr4.1:7233183-7233202 | None:intergenic | 35.0% | |
| CTTTCAGAGGAACTTATTGA+CGG | - | chr4.1:7233758-7233777 | MS.gene70122:intron | 35.0% | |
| GAGTGGTTAAAGGAAAACTA+TGG | - | chr4.1:7233191-7233210 | MS.gene70122:intron | 35.0% | |
| TATTTGCAGGTAAACAATGC+AGG | - | chr4.1:7233349-7233368 | MS.gene70122:CDS | 35.0% | |
| TCAACTATCCAATAGTTGCT+TGG | - | chr4.1:7232501-7232520 | MS.gene70122:CDS | 35.0% | |
| TCAATTAAGGTCTTGCAAGA+AGG | - | chr4.1:7233104-7233123 | MS.gene70122:intron | 35.0% | |
| TCTTATTAAACTACTCCCTC+CGG | + | chr4.1:7232685-7232704 | None:intergenic | 35.0% | |
| TGCTTATAATAATGACCGGA+AGG | + | chr4.1:7232551-7232570 | None:intergenic | 35.0% | |
| TGGTTAAAGGAAAACTATGG+TGG | - | chr4.1:7233194-7233213 | MS.gene70122:intron | 35.0% | |
| TTCCTTATTCTGATCACCAA+AGG | - | chr4.1:7232406-7232425 | MS.gene70122:CDS | 35.0% | |
| TTTCCTGTAATTGCTTGTTC+AGG | + | chr4.1:7234052-7234071 | None:intergenic | 35.0% | |
| TTTCTACATCAAGTAGAGGA+TGG | - | chr4.1:7233794-7233813 | MS.gene70122:intron | 35.0% | |
| ! | AACCTTTGGTGATCAGAATA+AGG | + | chr4.1:7232411-7232430 | None:intergenic | 35.0% |
| ! | ATACAAATCTTTTCACCCTC+AGG | + | chr4.1:7233926-7233945 | None:intergenic | 35.0% |
| ! | TGTTGGCGTTGAATCAATTA+AGG | - | chr4.1:7233091-7233110 | MS.gene70122:intron | 35.0% |
| ! | TTGGTGATCAGAATAAGGAA+TGG | + | chr4.1:7232406-7232425 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTTGGGAGAGTTT+GGG | - | chr4.1:7232793-7232812 | MS.gene70122:intron | 35.0% |
| ACAACAAGAGATGCTAGTGT+TGG | - | chr4.1:7233074-7233093 | MS.gene70122:intron | 40.0% | |
| AGAGGATGGAACTTGGAAAT+CGG | - | chr4.1:7233808-7233827 | MS.gene70122:intron | 40.0% | |
| ATCAAGTAGAGGATGGAACT+TGG | - | chr4.1:7233801-7233820 | MS.gene70122:intron | 40.0% | |
| ATTAAGGTCTTGCAAGAAGG+TGG | - | chr4.1:7233107-7233126 | MS.gene70122:intron | 40.0% | |
| CAAACTCTCCCAAACTCAAA+AGG | + | chr4.1:7232794-7232813 | None:intergenic | 40.0% | |
| CATCTCATCCAAGCAACTAT+TGG | + | chr4.1:7232512-7232531 | None:intergenic | 40.0% | |
| CCAATTCTCTGAGTGGTTAA+AGG | - | chr4.1:7233181-7233200 | MS.gene70122:intron | 40.0% | |
| CCTTTAACCACTCAGAGAAT+TGG | + | chr4.1:7233184-7233203 | None:intergenic | 40.0% | |
| GAAACAATTGCTGTGGTTAC+CGG | - | chr4.1:7232984-7233003 | MS.gene70122:CDS | 40.0% | |
| GAAACTTTCAGATAGACCTG+AGG | - | chr4.1:7233907-7233926 | MS.gene70122:intron | 40.0% | |
| GAGAGAGCAATTAAGCAATG+TGG | - | chr4.1:7233730-7233749 | MS.gene70122:intron | 40.0% | |
| GAGTAGTCGGTAAATATTCG+AGG | + | chr4.1:7233842-7233861 | None:intergenic | 40.0% | |
| GGAGGGAGTAGTTTAATAAG+AGG | - | chr4.1:7232684-7232703 | MS.gene70122:CDS | 40.0% | |
| GTCTAAGGAAACAATTGCTG+TGG | - | chr4.1:7232977-7232996 | MS.gene70122:CDS | 40.0% | |
| TAGTTTCGACAACGAGTAGT+CGG | + | chr4.1:7233855-7233874 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr4.1:7232667-7232686 | MS.gene70122:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr4.1:7232666-7232685 | MS.gene70122:CDS | 40.0% | |
| ! | TGGGTTAAAACAGCTCTAAC+AGG | - | chr4.1:7233965-7233984 | MS.gene70122:intron | 40.0% |
| !! | TCAAGACAACTTGCTGATCA+TGG | - | chr4.1:7233035-7233054 | MS.gene70122:CDS | 40.0% |
| !!! | CTTTTGAGTTTGGGAGAGTT+TGG | - | chr4.1:7232792-7232811 | MS.gene70122:intron | 40.0% |
| ACCGGTGGAAATAGAGGAAT+TGG | - | chr4.1:7233002-7233021 | MS.gene70122:CDS | 45.0% | |
| ACGAGATCACATACTCCTTC+CGG | - | chr4.1:7232533-7232552 | MS.gene70122:CDS | 45.0% | |
| CCCAATTCCTCTATTTCCAC+CGG | + | chr4.1:7233006-7233025 | None:intergenic | 45.0% | |
| CCGGTGGAAATAGAGGAATT+GGG | - | chr4.1:7233003-7233022 | MS.gene70122:CDS | 45.0% | |
| GAGGATGGAACTTGGAAATC+GGG | - | chr4.1:7233809-7233828 | MS.gene70122:intron | 45.0% | |
| GGTGTCAGGTTCGACAATTT+AGG | - | chr4.1:7232833-7232852 | MS.gene70122:intron | 45.0% | |
| GTAAATGTTAGCTCGCGTCT+AGG | - | chr4.1:7233508-7233527 | MS.gene70122:intron | 45.0% | |
| GTCAGGTTCGACAATTTAGG+TGG | - | chr4.1:7232836-7232855 | MS.gene70122:intron | 45.0% | |
| ! | ACAGCTCTAACAGGTTATGC+AGG | - | chr4.1:7233974-7233993 | MS.gene70122:intron | 45.0% |
| ! | CGTATATAGGTGGTGGTCTA+AGG | - | chr4.1:7232962-7232981 | MS.gene70122:CDS | 45.0% |
| !! | ATGGTGCTGATACTGGAGTT+TGG | - | chr4.1:7234014-7234033 | MS.gene70122:CDS | 45.0% |
| !! | CGCAAGAGATATCGCTTTTG+AGG | - | chr4.1:7232379-7232398 | MS.gene70122:CDS | 45.0% |
| !!! | AGAGCTGTTTTAACCCAACC+AGG | + | chr4.1:7233962-7233981 | None:intergenic | 45.0% |
| ACAATTGCTGTGGTTACCGG+TGG | - | chr4.1:7232987-7233006 | MS.gene70122:CDS | 50.0% | |
| CCACTCAGAGAATTGGGTGA+TGG | + | chr4.1:7233177-7233196 | None:intergenic | 50.0% | |
| CCATCACCCAATTCTCTGAG+TGG | - | chr4.1:7233174-7233193 | MS.gene70122:intron | 50.0% | |
| GAACTTGGAAATCGGGAGGA+TGG | - | chr4.1:7233816-7233835 | MS.gene70122:intron | 50.0% | |
| GATGGAACTTGGAAATCGGG+AGG | - | chr4.1:7233812-7233831 | MS.gene70122:intron | 50.0% | |
| GCAGCGGAAGCCTTCATTAA+TGG | + | chr4.1:7233475-7233494 | None:intergenic | 50.0% | |
| GTGGTTACCGGTGGAAATAG+AGG | - | chr4.1:7232996-7233015 | MS.gene70122:CDS | 50.0% | |
| TACAATACGACCACCAGCAG+CGG | + | chr4.1:7233491-7233510 | None:intergenic | 50.0% | |
| TCGCGTCTAGGTCGACTAAA+TGG | - | chr4.1:7233520-7233539 | MS.gene70122:intron | 50.0% | |
| TTAATGAAGGCTTCCGCTGC+TGG | - | chr4.1:7233475-7233494 | MS.gene70122:intron | 50.0% | |
| TTGTCGAACCTGACACCTCT+AGG | + | chr4.1:7232830-7232849 | None:intergenic | 50.0% | |
| !! | GGAAGTGTCTCAGTTGAGGA+TGG | - | chr4.1:7233995-7234014 | MS.gene70122:intron | 50.0% |
| !! | GTTGAGGATGGTGCTGATAC+TGG | - | chr4.1:7234007-7234026 | MS.gene70122:intron | 50.0% |
| !! | TGCAGGAAGTGTCTCAGTTG+AGG | - | chr4.1:7233991-7234010 | MS.gene70122:intron | 50.0% |
| GCAAGAAGGTGGTCTCGATG+TGG | - | chr4.1:7233118-7233137 | MS.gene70122:intron | 55.0% | |
| TCGAACCTGACACCTCTAGG+AGG | + | chr4.1:7232827-7232846 | None:intergenic | 55.0% | |
| ATGAAGGCTTCCGCTGCTGG+TGG | - | chr4.1:7233478-7233497 | MS.gene70122:intron | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTAG+AGG | - | chr4.1:7232812-7232831 | MS.gene70122:intron | 60.0% |
| !! | GTGCTCCTCCTAGAGGTGTC+AGG | - | chr4.1:7232819-7232838 | MS.gene70122:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 7232336 | 7234105 | 7232336 | ID=MS.gene70122 |
| chr4.1 | mRNA | 7232336 | 7234105 | 7232336 | ID=MS.gene70122.t1;Parent=MS.gene70122 |
| chr4.1 | exon | 7234014 | 7234105 | 7234014 | ID=MS.gene70122.t1.exon1;Parent=MS.gene70122.t1 |
| chr4.1 | CDS | 7234014 | 7234105 | 7234014 | ID=cds.MS.gene70122.t1;Parent=MS.gene70122.t1 |
| chr4.1 | exon | 7233212 | 7233470 | 7233212 | ID=MS.gene70122.t1.exon2;Parent=MS.gene70122.t1 |
| chr4.1 | CDS | 7233212 | 7233470 | 7233212 | ID=cds.MS.gene70122.t1;Parent=MS.gene70122.t1 |
| chr4.1 | exon | 7232889 | 7233083 | 7232889 | ID=MS.gene70122.t1.exon3;Parent=MS.gene70122.t1 |
| chr4.1 | CDS | 7232889 | 7233083 | 7232889 | ID=cds.MS.gene70122.t1;Parent=MS.gene70122.t1 |
| chr4.1 | exon | 7232336 | 7232731 | 7232336 | ID=MS.gene70122.t1.exon4;Parent=MS.gene70122.t1 |
| chr4.1 | CDS | 7232336 | 7232731 | 7232336 | ID=cds.MS.gene70122.t1;Parent=MS.gene70122.t1 |
| Gene Sequence |
| Protein sequence |
