AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70566


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70566.t1 MTR_3g078860 96.947 262 8 0 1 262 1 262 0.0 533
MS.gene70566.t1 MTR_1g048990 49.115 226 98 3 43 252 51 275 1.68e-67 211
MS.gene70566.t1 MTR_1g048990 48.128 187 80 3 43 213 51 236 1.73e-50 166
MS.gene70566.t1 MTR_3g094250 32.110 218 131 8 34 243 21 229 7.21e-29 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70566.t1 AT5G23310 66.541 266 82 2 1 262 1 263 1.15e-130 370
MS.gene70566.t1 AT5G51100 50.435 230 95 4 33 245 36 263 3.60e-76 234
MS.gene70566.t1 AT5G51100 48.696 230 90 5 33 245 36 254 1.32e-69 216
MS.gene70566.t1 AT4G25100 50.704 213 100 3 39 250 1 209 2.64e-68 210
MS.gene70566.t1 AT4G25100 50.704 213 100 3 39 250 1 209 2.64e-68 210
MS.gene70566.t1 AT4G25100 50.704 213 100 3 39 250 1 209 2.64e-68 210
MS.gene70566.t1 AT4G25100 50.704 213 100 3 39 250 1 209 2.64e-68 210
MS.gene70566.t1 AT5G51100 50.761 197 79 3 65 245 1 195 1.65e-66 206
MS.gene70566.t1 AT5G51100 50.761 197 79 3 65 245 1 195 1.65e-66 206
MS.gene70566.t1 AT4G25100 49.733 187 89 3 65 250 1 183 1.37e-57 182
MS.gene70566.t1 AT5G51100 50.538 186 73 4 33 201 36 219 6.64e-57 182
MS.gene70566.t1 AT5G51100 50.538 186 73 4 33 201 36 219 6.64e-57 182
MS.gene70566.t1 AT3G10920 33.036 224 130 8 32 243 9 224 8.40e-31 114
MS.gene70566.t1 AT3G10920 32.589 224 130 9 32 243 9 223 1.70e-28 108
MS.gene70566.t1 AT3G56350 34.946 186 97 5 55 228 42 215 2.84e-27 105

Find 67 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAGATTGAAAAGGATTT+TGG 0.090800 3.1:-64659020 MS.gene70566:CDS
GGGAAGGATGATATACTTTA+TGG 0.140754 3.1:-64659840 MS.gene70566:CDS
CACAAATCCAAATTGATTAT+TGG 0.163080 3.1:+64658330 None:intergenic
CGTGCAGCCAATAATCAATT+TGG 0.180074 3.1:-64658337 MS.gene70566:intron
TTTGGAATCATGACTTCTTC+TGG 0.232976 3.1:-64659091 MS.gene70566:CDS
TGGAATAGGGTTTAAGTAAC+AGG 0.279125 3.1:+64661061 None:intergenic
GCACTTACATTGTTTGGTTC+TGG 0.289790 3.1:-64658960 MS.gene70566:CDS
GAAGCTGCACTTACATTGTT+TGG 0.294047 3.1:-64658966 MS.gene70566:CDS
TTACATTGTTTGGTTCTGGC+TGG 0.329309 3.1:-64658956 MS.gene70566:CDS
GGAGGTGATATGCCCATTCT+AGG 0.347578 3.1:-64659050 MS.gene70566:CDS
ACTATATCACCCCACACAAT+TGG 0.353385 3.1:+64658430 None:intergenic
TGTTTGGTTCTGGCTGGGTT+TGG 0.376067 3.1:-64658950 MS.gene70566:CDS
AGACGAGAGCTAGTTGGAAT+AGG 0.389477 3.1:+64661047 None:intergenic
TTGGAATCATGACTTCTTCT+GGG 0.399356 3.1:-64659090 MS.gene70566:CDS
AATGCAGCATGCATACTATC+TGG 0.401361 3.1:-64658193 MS.gene70566:intron
AATAATCAATTTGGATTTGT+GGG 0.402335 3.1:-64658328 MS.gene70566:CDS
GACGAGAGCTAGTTGGAATA+GGG 0.406364 3.1:+64661048 None:intergenic
ACCCCACACAATTGGGCAAA+TGG 0.409488 3.1:+64658438 None:intergenic
TTCTGAACCACCTTGTGTCT+TGG 0.411846 3.1:-64658053 MS.gene70566:CDS
CTTCTGGGAATCCATGCAAC+CGG 0.415502 3.1:-64659075 MS.gene70566:CDS
ATTGTCTGCTTGCTCAAATA+TGG 0.433157 3.1:+64659921 None:intergenic
TACATTGTTTGGTTCTGGCT+GGG 0.439690 3.1:-64658955 MS.gene70566:CDS
TTTACCCTGTGAAGAAGCTT+AGG 0.443807 3.1:+64660990 None:intergenic
CAATAATCAATTTGGATTTG+TGG 0.448288 3.1:-64658329 MS.gene70566:CDS
CTATATCACCCCACACAATT+GGG 0.451922 3.1:+64658431 None:intergenic
AGCAGACAATCGACATGCAC+TGG 0.468183 3.1:-64659908 MS.gene70566:CDS
AAGGTTTGAACGAACAGCTT+GGG 0.470005 3.1:-64659860 MS.gene70566:CDS
AGATTCCTAAGCTTCTTCAC+AGG 0.484788 3.1:-64660995 MS.gene70566:CDS
ATCACCTCCTCCCGGTTGCA+TGG 0.486059 3.1:+64659064 None:intergenic
CTGTTGAAGGAGACCTAGAA+TGG 0.488189 3.1:+64659037 None:intergenic
TCTCCTTCAACAGATTGAAA+AGG 0.504146 3.1:-64659027 MS.gene70566:CDS
CTGCAACGGAACGCTTGACA+TGG 0.509366 3.1:-64658026 MS.gene70566:CDS
CACTTACATGTTCGTAGGGA+GGG 0.519044 3.1:+64660350 None:intergenic
GAAGGTTTGAACGAACAGCT+TGG 0.524067 3.1:-64659861 MS.gene70566:CDS
TGCACTGGGGAGAGCATCAT+CGG 0.535998 3.1:-64659893 MS.gene70566:CDS
TGGTACACTTACATGTTCGT+AGG 0.546092 3.1:+64660345 None:intergenic
TATACTTTATGGTTACACCT+TGG 0.547554 3.1:-64659829 MS.gene70566:CDS
TGCCATTTGCCCAATTGTGT+GGG 0.548387 3.1:-64658440 MS.gene70566:CDS
CACTTTGACTAGTTCATCCA+AGG 0.548426 3.1:+64659812 None:intergenic
TTCTGGGAATCCATGCAACC+GGG 0.558653 3.1:-64659074 MS.gene70566:CDS
GAATCCATGCAACCGGGAGG+AGG 0.560022 3.1:-64659068 MS.gene70566:CDS
GCAGACAATCGACATGCACT+GGG 0.561935 3.1:-64659907 MS.gene70566:CDS
ATGCCATTTGCCCAATTGTG+TGG 0.565068 3.1:-64658441 MS.gene70566:CDS
TGCATACTATCTGGATTACA+AGG 0.567151 3.1:-64658184 MS.gene70566:intron
ACTTACATGTTCGTAGGGAG+GGG 0.579268 3.1:+64660351 None:intergenic
TGTGTCTTGGAATGCTGCAA+CGG 0.582003 3.1:-64658040 MS.gene70566:CDS
GGAACGCTTGACATGGGGAG+AGG 0.586433 3.1:-64658019 MS.gene70566:CDS
GATTCCTAAGCTTCTTCACA+GGG 0.589975 3.1:-64660994 MS.gene70566:intron
TGCAACGGAACGCTTGACAT+GGG 0.591829 3.1:-64658025 MS.gene70566:CDS
GGTACACTTACATGTTCGTA+GGG 0.593745 3.1:+64660346 None:intergenic
GAAATGAGACGAGAGCTAGT+TGG 0.595195 3.1:+64661041 None:intergenic
GCATTGTTGAACTCAGGTGA+GGG 0.599120 3.1:+64659771 None:intergenic
TGTTGAAGGAGACCTAGAAT+GGG 0.600044 3.1:+64659038 None:intergenic
TGCATTGTTGAACTCAGGTG+AGG 0.604713 3.1:+64659770 None:intergenic
TCAGCTGCATTGTTGAACTC+AGG 0.612280 3.1:+64659765 None:intergenic
TGAGTTCAACAATGCAGCTG+AGG 0.616915 3.1:-64659763 MS.gene70566:intron
AATCAATTTGGATTTGTGGG+AGG 0.617816 3.1:-64658325 MS.gene70566:intron
TTTGAACGAACAGCTTGGGA+AGG 0.619243 3.1:-64659856 MS.gene70566:CDS
ATGGGCATATCACCTCCTCC+CGG 0.633695 3.1:+64659056 None:intergenic
GCAACGGAACGCTTGACATG+GGG 0.640768 3.1:-64658024 MS.gene70566:CDS
CAGCATTCCAAGACACAAGG+TGG 0.656423 3.1:+64658046 None:intergenic
ACACTTACATGTTCGTAGGG+AGG 0.658707 3.1:+64660349 None:intergenic
GTCAAAGTGACATACAACAA+TGG 0.665004 3.1:-64659798 MS.gene70566:CDS
TTGCAGCATTCCAAGACACA+AGG 0.678422 3.1:+64658043 None:intergenic
GCCATTTGCCCAATTGTGTG+GGG 0.687217 3.1:-64658439 MS.gene70566:CDS
TGGGAATCCATGCAACCGGG+AGG 0.708383 3.1:-64659071 MS.gene70566:CDS
CAGACAATCGACATGCACTG+GGG 0.790084 3.1:-64659906 MS.gene70566:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAGTAAAAGTTAAA+TGG + chr3.1:64658118-64658137 None:intergenic 10.0%
!! GTATATTACATAATAAAATT+AGG - chr3.1:64659406-64659425 MS.gene70566:intron 10.0%
!! AATGTTTGACTATTAAAATT+TGG - chr3.1:64658284-64658303 MS.gene70566:intron 15.0%
!! ATATATTACAACTGAAAATT+GGG + chr3.1:64658148-64658167 None:intergenic 15.0%
!! TTCTTTCTTTATCATTATAT+TGG + chr3.1:64658894-64658913 None:intergenic 15.0%
!!! ATCATTATATTGGTTAAAAT+CGG + chr3.1:64658884-64658903 None:intergenic 15.0%
!!! TATGACTAAATACATTTTTA+TGG + chr3.1:64659519-64659538 None:intergenic 15.0%
!!! TATTATTGCATTGATAAATA+TGG - chr3.1:64658247-64658266 MS.gene70566:intron 15.0%
!!! TTCAACAAATGATTTTTATT+TGG - chr3.1:64659676-64659695 MS.gene70566:intron 15.0%
!! AAGTAATGATTAATAATCAC+AGG - chr3.1:64658325-64658344 MS.gene70566:intron 20.0%
!! AATAATCAATTTGGATTTGT+GGG - chr3.1:64660718-64660737 MS.gene70566:intron 20.0%
!! AATTCAGAAAAACAAAATCT+TGG + chr3.1:64660291-64660310 None:intergenic 20.0%
!! CAATAACAAAATTACAATTG+TGG - chr3.1:64659857-64659876 MS.gene70566:CDS 20.0%
!! CATATATTACAACTGAAAAT+TGG + chr3.1:64658149-64658168 None:intergenic 20.0%
!! GCATATTAAGAAGATAATAT+GGG + chr3.1:64660199-64660218 None:intergenic 20.0%
!! TTAATATGCCATAAAATCAT+TGG - chr3.1:64660210-64660229 MS.gene70566:intron 20.0%
!! TTATTAATGACACGTAAAAA+TGG + chr3.1:64659638-64659657 None:intergenic 20.0%
!!! ATTTACATATTTTATGCTTG+AGG - chr3.1:64660342-64660361 MS.gene70566:intron 20.0%
!!! CTACTCAATTTTTTATGTTA+AGG + chr3.1:64658422-64658441 None:intergenic 20.0%
!!! GACAGATTTTATATAATGAA+GGG + chr3.1:64660652-64660671 None:intergenic 20.0%
!!! TACATTTTTGAGTTTGTTAA+AGG + chr3.1:64659041-64659060 None:intergenic 20.0%
!!! TGATCTTTTAAAGTTGATTA+TGG - chr3.1:64659334-64659353 MS.gene70566:intron 20.0%
!!! TTTGAAACTATATCAATGTA+AGG - chr3.1:64659563-64659582 MS.gene70566:intron 20.0%
! AAACATTTGCAACAATCAAT+CGG + chr3.1:64660529-64660548 None:intergenic 25.0%
! AAATTGAGTAGAGTCATTAA+AGG - chr3.1:64658431-64658450 MS.gene70566:intron 25.0%
! AACTGTTTAATCTTTCTTGA+AGG - chr3.1:64658214-64658233 MS.gene70566:intron 25.0%
! AAGTTAGAATCATGATATGA+AGG + chr3.1:64659069-64659088 None:intergenic 25.0%
! AATAAAAAAAAAGGGCAACT+TGG + chr3.1:64660502-64660521 None:intergenic 25.0%
! ATAAATGAATACTCTTTCTG+TGG - chr3.1:64659597-64659616 MS.gene70566:intron 25.0%
! ATGTCTTTAATTGTAGAATG+TGG - chr3.1:64659539-64659558 MS.gene70566:intron 25.0%
! CAATAATCAATTTGGATTTG+TGG - chr3.1:64660717-64660736 MS.gene70566:intron 25.0%
! CACAAATCCAAATTGATTAT+TGG + chr3.1:64660719-64660738 None:intergenic 25.0%
! CTCCATTTCAAATTTCAAAT+AGG + chr3.1:64660674-64660693 None:intergenic 25.0%
! GGCATATTAAGAAGATAATA+TGG + chr3.1:64660200-64660219 None:intergenic 25.0%
! TAATTGAAGGATCAACAAAA+AGG + chr3.1:64659011-64659030 None:intergenic 25.0%
! TATATCTCCAATCAAAAACA+TGG + chr3.1:64658742-64658761 None:intergenic 25.0%
! TGTCTTTAATTGTAGAATGT+GGG - chr3.1:64659540-64659559 MS.gene70566:intron 25.0%
! TTCAACTAATCCAAGTATAT+AGG + chr3.1:64658774-64658793 None:intergenic 25.0%
! TTGTATTTAAGCAGAAAAAG+AGG - chr3.1:64658620-64658639 MS.gene70566:intron 25.0%
! TTTCTGCTTAAATACAATTG+AGG + chr3.1:64658617-64658636 None:intergenic 25.0%
!! AAACAGTTTTACTTTAGTGT+CGG + chr3.1:64658202-64658221 None:intergenic 25.0%
!! AATCATTTGTTGAAGAAACA+AGG + chr3.1:64659670-64659689 None:intergenic 25.0%
!! GGACAGATTTTATATAATGA+AGG + chr3.1:64660653-64660672 None:intergenic 25.0%
!! GTCCTATTTGAAATTTGAAA+TGG - chr3.1:64660669-64660688 MS.gene70566:intron 25.0%
!! TCAAAAGTTACAGCATTTTA+TGG - chr3.1:64658664-64658683 MS.gene70566:intron 25.0%
!! TTGAATTTTGTACATAAGTC+TGG + chr3.1:64658032-64658051 None:intergenic 25.0%
!! TTTGTTGCTTCAATATTCAT+AGG - chr3.1:64659091-64659110 MS.gene70566:CDS 25.0%
!!! AATTCTCATTTTTATCTCAC+TGG - chr3.1:64660315-64660334 MS.gene70566:intron 25.0%
!!! ACTGTTTTAACCTATATACT+TGG - chr3.1:64658761-64658780 MS.gene70566:intron 25.0%
!!! ATTCTCATTTTTATCTCACT+GGG - chr3.1:64660316-64660335 MS.gene70566:intron 25.0%
!!! GCAATTTTTTTTCTGATTTG+TGG - chr3.1:64658578-64658597 MS.gene70566:intron 25.0%
!!! TTTTTGAGTTTGTTAAAGGT+TGG + chr3.1:64659037-64659056 None:intergenic 25.0%
AAAACATTAGTGATCGACAA+AGG - chr3.1:64658927-64658946 MS.gene70566:intron 30.0%
AAACATTAGTGATCGACAAA+GGG - chr3.1:64658928-64658947 MS.gene70566:intron 30.0%
AAATAAGCGACGATATATGA+TGG + chr3.1:64660895-64660914 None:intergenic 30.0%
ACCTTATTGTTTGATATTGC+CGG - chr3.1:64660464-64660483 MS.gene70566:intron 30.0%
ATAGCAACAACCTTTATGTT+AGG - chr3.1:64660805-64660824 MS.gene70566:intron 30.0%
ATCGGCAGCAATAAAAAAAA+AGG + chr3.1:64660511-64660530 None:intergenic 30.0%
ATTTGGACTTTAACACTACT+AGG - chr3.1:64658301-64658320 MS.gene70566:intron 30.0%
CCAAAAATATCTACATCACA+TGG + chr3.1:64659812-64659831 None:intergenic 30.0%
CGGAAGAGGAAAAAATAATT+AGG + chr3.1:64659930-64659949 None:intergenic 30.0%
GAAACTATATCAATGTAAGG+TGG - chr3.1:64659566-64659585 MS.gene70566:intron 30.0%
GATTTATTCTCTATGGTAAG+TGG - chr3.1:64658556-64658575 MS.gene70566:intron 30.0%
GTCAAGTGATTTATTCTCTA+TGG - chr3.1:64658549-64658568 MS.gene70566:intron 30.0%
TAAAGGTTGGACTTAATTGA+AGG + chr3.1:64659024-64659043 None:intergenic 30.0%
TATACTTTATGGTTACACCT+TGG - chr3.1:64659217-64659236 MS.gene70566:intron 30.0%
TCCAATCAAAAACATGGATT+CGG + chr3.1:64658736-64658755 None:intergenic 30.0%
TCGGCAGCAATAAAAAAAAA+GGG + chr3.1:64660510-64660529 None:intergenic 30.0%
TGATTGTTGCAAATGTTTGT+TGG - chr3.1:64660531-64660550 MS.gene70566:intron 30.0%
TTTAAGCAGAAAAAGAGGTT+TGG - chr3.1:64658625-64658644 MS.gene70566:intron 30.0%
TTTGGACTTTAACACTACTA+GGG - chr3.1:64658302-64658321 MS.gene70566:intron 30.0%
! AATCCTTTTCAATCTGTTGA+AGG + chr3.1:64660025-64660044 None:intergenic 30.0%
! AGAGAAGTCCAATGATTTTA+TGG + chr3.1:64660221-64660240 None:intergenic 30.0%
! CAACAGATTGAAAAGGATTT+TGG - chr3.1:64660026-64660045 MS.gene70566:intron 30.0%
! CCATGTGATGTAGATATTTT+TGG - chr3.1:64659809-64659828 MS.gene70566:CDS 30.0%
! GCATTTTGAATAGGTTTATG+TGG + chr3.1:64659380-64659399 None:intergenic 30.0%
!! GGCATTTGAAGTTTTAACAA+TGG + chr3.1:64660590-64660609 None:intergenic 30.0%
!! GTGGTTTAGTTCTACAATAA+TGG - chr3.1:64660389-64660408 MS.gene70566:CDS 30.0%
!! TACACTGAAGCATTTTGAAT+AGG + chr3.1:64659389-64659408 None:intergenic 30.0%
!! TTTCTAAAACAAGTAGTCCA+CGG + chr3.1:64658502-64658521 None:intergenic 30.0%
!!! TTATTTTTTCCTCTTCCGAA+AGG - chr3.1:64659932-64659951 MS.gene70566:CDS 30.0%
AAATATGACGATGCAACGTA+TGG + chr3.1:64658831-64658850 None:intergenic 35.0%
AAGGGGGAATCAATTAGAAA+AGG + chr3.1:64660135-64660154 None:intergenic 35.0%
AATATCTACATCACATGGAC+TGG + chr3.1:64659807-64659826 None:intergenic 35.0%
AATCAATTTGGATTTGTGGG+AGG - chr3.1:64660721-64660740 MS.gene70566:intron 35.0%
AATGAGTTTCATTTATGCCG+TGG - chr3.1:64658482-64658501 MS.gene70566:CDS 35.0%
ACAAGTTTCCGGTTATGAAT+GGG + chr3.1:64659469-64659488 None:intergenic 35.0%
ACGCCAATATTATCAACACT+TGG + chr3.1:64659442-64659461 None:intergenic 35.0%
AGTCATGATTCCAAACCTTT+CGG + chr3.1:64659950-64659969 None:intergenic 35.0%
ATATCTACATCACATGGACT+GGG + chr3.1:64659806-64659825 None:intergenic 35.0%
ATGAACAGCAACAAAAGCAA+TGG + chr3.1:64658979-64658998 None:intergenic 35.0%
ATTGTCTGCTTGCTCAAATA+TGG + chr3.1:64659128-64659147 None:intergenic 35.0%
CCAATCAAAAACATGGATTC+GGG + chr3.1:64658735-64658754 None:intergenic 35.0%
CGCCAATATTATCAACACTT+GGG + chr3.1:64659441-64659460 None:intergenic 35.0%
CTGCTTAAATACAATTGAGG+AGG + chr3.1:64658614-64658633 None:intergenic 35.0%
GGGAAGGATGATATACTTTA+TGG - chr3.1:64659206-64659225 MS.gene70566:intron 35.0%
GTCAAAGTGACATACAACAA+TGG - chr3.1:64659248-64659267 MS.gene70566:intron 35.0%
TCTCCTTCAACAGATTGAAA+AGG - chr3.1:64660019-64660038 MS.gene70566:intron 35.0%
TGCATACTATCTGGATTACA+AGG - chr3.1:64660862-64660881 MS.gene70566:intron 35.0%
TGGAATAGGGTTTAAGTAAC+AGG + chr3.1:64657988-64658007 None:intergenic 35.0%
TTGAAGGATCAACAAAAAGG+AGG + chr3.1:64659008-64659027 None:intergenic 35.0%
TTGGAATCATGACTTCTTCT+GGG - chr3.1:64659956-64659975 MS.gene70566:intron 35.0%
TTTCCAATTTCATGCAAGCT+AGG + chr3.1:64659716-64659735 None:intergenic 35.0%
! ATAGTTCTACACAACAGTCT+GGG + chr3.1:64660419-64660438 None:intergenic 35.0%
! CATCATCGGAATTTTGTTGA+AGG - chr3.1:64659167-64659186 MS.gene70566:intron 35.0%
! GTAAAAATGGAAAAGAGTGC+AGG + chr3.1:64659625-64659644 None:intergenic 35.0%
! GTCACTTGTCTTTTGTCATT+TGG - chr3.1:64660367-64660386 MS.gene70566:CDS 35.0%
! TTACCTAGCTTGCATGAAAT+TGG - chr3.1:64659710-64659729 MS.gene70566:intron 35.0%
! TTTGGAATCATGACTTCTTC+TGG - chr3.1:64659955-64659974 MS.gene70566:intron 35.0%
!! ACTTGTCTTTTGTCATTTGG+TGG - chr3.1:64660370-64660389 MS.gene70566:CDS 35.0%
!! CTCCCAAGTGTTGATAATAT+TGG - chr3.1:64659436-64659455 MS.gene70566:intron 35.0%
!! GCTGTAACTTTTGAAGATCT+GGG + chr3.1:64658658-64658677 None:intergenic 35.0%
!! TGCTGTAACTTTTGAAGATC+TGG + chr3.1:64658659-64658678 None:intergenic 35.0%
!!! AGATATTTTTGGCTGTTCGT+CGG - chr3.1:64659820-64659839 MS.gene70566:CDS 35.0%
!!! CTTGTGTTGTTTTGTGTTGT+AGG + chr3.1:64660765-64660784 None:intergenic 35.0%
AAGGTTTGAACGAACAGCTT+GGG - chr3.1:64659186-64659205 MS.gene70566:intron 40.0%
AATGCAGCATGCATACTATC+TGG - chr3.1:64660853-64660872 MS.gene70566:intron 40.0%
ACACAACACTTTAGCAAGAC+AGG + chr3.1:64660161-64660180 None:intergenic 40.0%
ACTATATCACCCCACACAAT+TGG + chr3.1:64660619-64660638 None:intergenic 40.0%
AGATAGTATGCATGCTGCAT+TGG + chr3.1:64660854-64660873 None:intergenic 40.0%
AGATTCCTAAGCTTCTTCAC+AGG - chr3.1:64658051-64658070 MS.gene70566:CDS 40.0%
CAAGTTTCCGGTTATGAATG+GGG + chr3.1:64659468-64659487 None:intergenic 40.0%
CACAACACTTTAGCAAGACA+GGG + chr3.1:64660160-64660179 None:intergenic 40.0%
CACAAGTTTCCGGTTATGAA+TGG + chr3.1:64659470-64659489 None:intergenic 40.0%
CAGCAACAAAAGCAATGGAA+AGG + chr3.1:64658974-64658993 None:intergenic 40.0%
CATGGATTCGGGTAACTATA+TGG + chr3.1:64658724-64658743 None:intergenic 40.0%
CGTGCAGCCAATAATCAATT+TGG - chr3.1:64660709-64660728 MS.gene70566:intron 40.0%
CTATATCACCCCACACAATT+GGG + chr3.1:64660618-64660637 None:intergenic 40.0%
GAAGCTGCACTTACATTGTT+TGG - chr3.1:64660080-64660099 MS.gene70566:intron 40.0%
GATTCCTAAGCTTCTTCACA+GGG - chr3.1:64658052-64658071 MS.gene70566:CDS 40.0%
GCCGGCAATATCAAACAATA+AGG + chr3.1:64660468-64660487 None:intergenic 40.0%
GGTACACTTACATGTTCGTA+GGG + chr3.1:64658703-64658722 None:intergenic 40.0%
GTCAGTGATGCCTAACATAA+AGG + chr3.1:64660818-64660837 None:intergenic 40.0%
TCAGAAGAGTTTCAGACTCT+CGG + chr3.1:64659494-64659513 None:intergenic 40.0%
TGGTACACTTACATGTTCGT+AGG + chr3.1:64658704-64658723 None:intergenic 40.0%
TGTTGAAGGAGACCTAGAAT+GGG + chr3.1:64660011-64660030 None:intergenic 40.0%
TTTACCCTGTGAAGAAGCTT+AGG + chr3.1:64658059-64658078 None:intergenic 40.0%
! AGTTGATTATGGCTCTGTAG+CGG - chr3.1:64659345-64659364 MS.gene70566:intron 40.0%
! ATAGTGTAGCTCTGTAGTGT+TGG - chr3.1:64658358-64658377 MS.gene70566:intron 40.0%
! CACTTTGACTAGTTCATCCA+AGG + chr3.1:64659237-64659256 None:intergenic 40.0%
! CATAGTTCTACACAACAGTC+TGG + chr3.1:64660420-64660439 None:intergenic 40.0%
! GCACTTACATTGTTTGGTTC+TGG - chr3.1:64660086-64660105 MS.gene70566:intron 40.0%
! TTTTCCTCTTCCGAAAGGTT+TGG - chr3.1:64659937-64659956 MS.gene70566:intron 40.0%
!! CCCGAATCCATGTTTTTGAT+TGG - chr3.1:64658732-64658751 MS.gene70566:intron 40.0%
!! TACATTGTTTGGTTCTGGCT+GGG - chr3.1:64660091-64660110 MS.gene70566:intron 40.0%
!! TTACATTGTTTGGTTCTGGC+TGG - chr3.1:64660090-64660109 MS.gene70566:intron 40.0%
AATCTGTGTGGGATAAGGCT+TGG - chr3.1:64659746-64659765 MS.gene70566:intron 45.0%
AATTGTCTGCCCAATCTGTG+TGG - chr3.1:64659734-64659753 MS.gene70566:intron 45.0%
ACACTTACATGTTCGTAGGG+AGG + chr3.1:64658700-64658719 None:intergenic 45.0%
ACTTACATGTTCGTAGGGAG+GGG + chr3.1:64658698-64658717 None:intergenic 45.0%
ACTTTAGCAAGACAGGGAGA+AGG + chr3.1:64660154-64660173 None:intergenic 45.0%
AGACGAGAGCTAGTTGGAAT+AGG + chr3.1:64658002-64658021 None:intergenic 45.0%
ATTGTCTGCCCAATCTGTGT+GGG - chr3.1:64659735-64659754 MS.gene70566:intron 45.0%
CACTTACATGTTCGTAGGGA+GGG + chr3.1:64658699-64658718 None:intergenic 45.0%
CAGAAGAGTTTCAGACTCTC+GGG + chr3.1:64659493-64659512 None:intergenic 45.0%
CTGTTGAAGGAGACCTAGAA+TGG + chr3.1:64660012-64660031 None:intergenic 45.0%
CTTTAGCAAGACAGGGAGAA+GGG + chr3.1:64660153-64660172 None:intergenic 45.0%
GAAATGAGACGAGAGCTAGT+TGG + chr3.1:64658008-64658027 None:intergenic 45.0%
GAAGGTTTGAACGAACAGCT+TGG - chr3.1:64659185-64659204 MS.gene70566:intron 45.0%
GACGAGAGCTAGTTGGAATA+GGG + chr3.1:64658001-64658020 None:intergenic 45.0%
GATTCCAAACCTTTCGGAAG+AGG + chr3.1:64659944-64659963 None:intergenic 45.0%
GCATTGTTGAACTCAGGTGA+GGG + chr3.1:64659278-64659297 None:intergenic 45.0%
TCAGCTGCATTGTTGAACTC+AGG + chr3.1:64659284-64659303 None:intergenic 45.0%
TGAGTTCAACAATGCAGCTG+AGG - chr3.1:64659283-64659302 MS.gene70566:intron 45.0%
TGCATTGTTGAACTCAGGTG+AGG + chr3.1:64659279-64659298 None:intergenic 45.0%
TGTGTCTTGGAATGCTGCAA+CGG - chr3.1:64661006-64661025 MS.gene70566:CDS 45.0%
TTCTGAACCACCTTGTGTCT+TGG - chr3.1:64660993-64661012 MS.gene70566:intron 45.0%
TTGCAGCATTCCAAGACACA+AGG + chr3.1:64661006-64661025 None:intergenic 45.0%
TTTAGCAAGACAGGGAGAAG+GGG + chr3.1:64660152-64660171 None:intergenic 45.0%
TTTGAACGAACAGCTTGGGA+AGG - chr3.1:64659190-64659209 MS.gene70566:intron 45.0%
! AAGCCTTATCCCACACAGAT+TGG + chr3.1:64659747-64659766 None:intergenic 45.0%
! AGCCTTATCCCACACAGATT+GGG + chr3.1:64659746-64659765 None:intergenic 45.0%
! ATGCCATTTGCCCAATTGTG+TGG - chr3.1:64660605-64660624 MS.gene70566:intron 45.0%
! GGAGAGGCTTTTGTGAACTT+GGG - chr3.1:64661043-64661062 MS.gene70566:CDS 45.0%
! TGCCATTTGCCCAATTGTGT+GGG - chr3.1:64660606-64660625 MS.gene70566:intron 45.0%
! TTCTCACGTCGTGCAACTTT+TGG - chr3.1:64660938-64660957 MS.gene70566:intron 45.0%
!! AACTTGGTGCACTAAATCGC+CGG + chr3.1:64660486-64660505 None:intergenic 45.0%
ACCCCACACAATTGGGCAAA+TGG + chr3.1:64660611-64660630 None:intergenic 50.0%
AGCAGACAATCGACATGCAC+TGG - chr3.1:64659138-64659157 MS.gene70566:intron 50.0%
CAGACAATCGACATGCACTG+GGG - chr3.1:64659140-64659159 MS.gene70566:intron 50.0%
CAGCATTCCAAGACACAAGG+TGG + chr3.1:64661003-64661022 None:intergenic 50.0%
GCAGACAATCGACATGCACT+GGG - chr3.1:64659139-64659158 MS.gene70566:intron 50.0%
GCCATTTGCCCAATTGTGTG+GGG - chr3.1:64660607-64660626 MS.gene70566:intron 50.0%
GCGTCTTCCCCATTCATAAC+CGG - chr3.1:64659458-64659477 MS.gene70566:intron 50.0%
GGAGGTGATATGCCCATTCT+AGG - chr3.1:64659996-64660015 MS.gene70566:intron 50.0%
TGCAACGGAACGCTTGACAT+GGG - chr3.1:64661021-64661040 MS.gene70566:CDS 50.0%
TGCCCAATCTGTGTGGGATA+AGG - chr3.1:64659741-64659760 MS.gene70566:intron 50.0%
TTAGCAAGACAGGGAGAAGG+GGG + chr3.1:64660151-64660170 None:intergenic 50.0%
! CTTCTGGGAATCCATGCAAC+CGG - chr3.1:64659971-64659990 MS.gene70566:intron 50.0%
! GGGAGAGGCTTTTGTGAACT+TGG - chr3.1:64661042-64661061 MS.gene70566:CDS 50.0%
! TTCTGGGAATCCATGCAACC+GGG - chr3.1:64659972-64659991 MS.gene70566:intron 50.0%
!! TGTTTGGTTCTGGCTGGGTT+TGG - chr3.1:64660096-64660115 MS.gene70566:intron 50.0%
ATGGGCATATCACCTCCTCC+CGG + chr3.1:64659993-64660012 None:intergenic 55.0%
CTGCAACGGAACGCTTGACA+TGG - chr3.1:64661020-64661039 MS.gene70566:CDS 55.0%
GACTCTCGGGCACAAGTTTC+CGG + chr3.1:64659480-64659499 None:intergenic 55.0%
GCAACGGAACGCTTGACATG+GGG - chr3.1:64661022-64661041 MS.gene70566:CDS 55.0%
!! TGCACTGGGGAGAGCATCAT+CGG - chr3.1:64659153-64659172 MS.gene70566:intron 55.0%
ATCACCTCCTCCCGGTTGCA+TGG + chr3.1:64659985-64660004 None:intergenic 60.0%
GAATCCATGCAACCGGGAGG+AGG - chr3.1:64659978-64659997 MS.gene70566:intron 60.0%
GGAACGCTTGACATGGGGAG+AGG - chr3.1:64661027-64661046 MS.gene70566:CDS 60.0%
TGGGAATCCATGCAACCGGG+AGG - chr3.1:64659975-64659994 MS.gene70566:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 64657978 64661090 64657978 ID=MS.gene70566
chr3.1 mRNA 64657978 64661090 64657978 ID=MS.gene70566.t1;Parent=MS.gene70566
chr3.1 exon 64660995 64661090 64660995 ID=MS.gene70566.t1.exon1;Parent=MS.gene70566.t1
chr3.1 CDS 64660995 64661090 64660995 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64660357 64660434 64660357 ID=MS.gene70566.t1.exon2;Parent=MS.gene70566.t1
chr3.1 CDS 64660357 64660434 64660357 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64659764 64659955 64659764 ID=MS.gene70566.t1.exon3;Parent=MS.gene70566.t1
chr3.1 CDS 64659764 64659955 64659764 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64658943 64659114 64658943 ID=MS.gene70566.t1.exon4;Parent=MS.gene70566.t1
chr3.1 CDS 64658943 64659114 64658943 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64658432 64658505 64658432 ID=MS.gene70566.t1.exon5;Parent=MS.gene70566.t1
chr3.1 CDS 64658432 64658505 64658432 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64658326 64658352 64658326 ID=MS.gene70566.t1.exon6;Parent=MS.gene70566.t1
chr3.1 CDS 64658326 64658352 64658326 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64658185 64658208 64658185 ID=MS.gene70566.t1.exon7;Parent=MS.gene70566.t1
chr3.1 CDS 64658185 64658208 64658185 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
chr3.1 exon 64657978 64658103 64657978 ID=MS.gene70566.t1.exon8;Parent=MS.gene70566.t1
chr3.1 CDS 64657978 64658103 64657978 ID=cds.MS.gene70566.t1;Parent=MS.gene70566.t1
Gene Sequence

>MS.gene70566

ATGGCTTCCTGTTACTTAAACCCTATTCCAACTAGCTCTCGTCTCATTTCACCAGACTTATGTACAAAATTCAAGATTCCTAAGCTTCTTCACAGGGTAAATTATTTGCATTTAACATTCTTAATAAACATGACTTGCCATTTAACTTTTACTATAAATTATATTCACCCAATTTTCAGTTGTAATATATGTCTTTCGATTAACTTTGATAAATGTAGCTACCGACACTAAAGTAAAACTGTTTAATCTTTCTTGAAGGCATCATGATATATTATTGCATTGATAAATATGGATCTTCTGCAAGAAAATGTTTGACTATTAAAATTTGGACTTTAACACTACTAGGGAAGTAATGATTAATAATCACAGGCATGTTTGAGATAGTGTAGCTCTGTAGTGTTGGTTGTTTGTGTGTAGATTATGTGTGTGTTGTCAGTATTTCCTTAACATAAAAAATTGAGTAGAGTCATTAAAGGTTTACTTTTACAGCACTTTGAAAAGTTTAATGAGTTTCATTTATGCCGTGGACTACTTGTTTTAGAAAAAAAATTATTTTTATAGTTTCTGATTCGTCAAGTGATTTATTCTCTATGGTAAGTGGCAATTTTTTTTCTGATTTGTGGCTATCTGTTTCCTCCTCAATTGTATTTAAGCAGAAAAAGAGGTTTGGTGTCTTGCCCAGATCTTCAAAAGTTACAGCATTTTATGGTTTGAAGACCCCTCCCTACGAACATGTAAGTGTACCATATAGTTACCCGAATCCATGTTTTTGATTGGAGATATACTGTTTTAACCTATATACTTGGATTAGTTGAATGCTGCACAATGCTTATCAGAGAGATCATTGCTGCCATACGTTGCATCGTCATATTTTGCTTTAATTGAGCTAGTTACATAGCTATTCCGATTTTAACCAATATAATGATAAAGAAAGAAACTAGAATTGAGAAAAACATTAGTGATCGACAAAGGGATGACATCATGCAATTAAGTCCTTTCCATTGCTTTTGTTGCTGTTCATTTATTTCCTCCTTTTTGTTGATCCTTCAATTAAGTCCAACCTTTAACAAACTCAAAAATGTAACTTACCTTCATATCATGATTCTAACTTTATTTGTTGCTTCAATATTCATAGGATGCATTAGAGCCATATTTGAGCAAGCAGACAATCGACATGCACTGGGGAGAGCATCATCGGAATTTTGTTGAAGGTTTGAACGAACAGCTTGGGAAGGATGATATACTTTATGGTTACACCTTGGATGAACTAGTCAAAGTGACATACAACAATGGCAATCCCTCACCTGAGTTCAACAATGCAGCTGAGGTATTAACTTATTGATAGCTTACTGACTTTGATCTTTTAAAGTTGATTATGGCTCTGTAGCGGCTTACTTTTCCACATAAACCTATTCAAAATGCTTCAGTGTATATTACATAATAAAATTAGGATACACACTCCCAAGTGTTGATAATATTGGCGTCTTCCCCATTCATAACCGGAAACTTGTGCCCGAGAGTCTGAAACTCTTCTGAAACCATAAAAATGTATTTAGTCATAATGTCTTTAATTGTAGAATGTGGGTTTGAAACTATATCAATGTAAGGTGGAAGTTGAAATAAATGAATACTCTTTCTGTGGTTCCTGCACTCTTTTCCATTTTTACGTGTCATTAATAAATGATTTTTCCTTGTTTCTTCAACAAATGATTTTTATTTGGTTCTTTTCATTTTACCTAGCTTGCATGAAATTGGAAATTGTCTGCCCAATCTGTGTGGGATAAGGCTTGGTTGTTGTCGTTGTTGTTGTTGTTGTTGTCGTCTGCCCAGTCCATGTGATGTAGATATTTTTGGCTGTTCGTCGGATTACAATAACTAACAATAACAAAATTACAATTGTGGTAGCTTTGTGCTTTTATATTCAAATACTGTCTATGTGAATTGTAGTACCTAATTATTTTTTCCTCTTCCGAAAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCGGGAGGAGGTGATATGCCCATTCTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACGAATTTCAAAGAAAAGTTTACAGAAGCTGCACTTACATTGTTTGGTTCTGGCTGGGTTTGGCTAGTTTGTAAGTCCTTTTCTAATTGATTCCCCCTTCTCCCTGTCTTGCTAAAGTGTTGTGTGTGAGTTATTCAGTTCCCATATTATCTTCTTAATATGCCATAAAATCATTGGACTTCTCTTATAACAAGCGAATATCTAAAATAAATATTCGATTTAAAAATAAGAACCAAGATTTTGTTTTTCTGAATTGTTAAATTCTCATTTTTATCTCACTGGGAATATTTACATATTTTATGCTTGAGGCTGTCACTTGTCTTTTGTCATTTGGTGGTTTAGTTCTACAATAATGGCATTCCCAGACTGTTGTGTAGAACTATGTTGATGTATACTATCTTAAGCAAAACCTTATTGTTTGATATTGCCGGCGATTTAGTGCACCAAGTTGCCCTTTTTTTTTATTGCTGCCGATTGATTGTTGCAAATGTTTGTTGGTTGTTTCAGTGAAGAGAGAAGAGAAACAATTAGCCATTGTTAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGGTGATATAGTAAGTTATTTACCCTTCATTATATAAAATCTGTCCTATTTGAAATTTGAAATGGAGCTGATAGTCTTTTCTCGTGCAGCCAATAATCAATTTGGATTTGTGGGAGGTATGATTATCTCTCTCTACCTACAACACAAAACAACACAAGTAGATGCATATTAAAATTACATAGCAACAACCTTTATGTTAGGCATCACTGACATTTTTTTTTACTCCAATGCAGCATGCATACTATCTGGATTACAAGGTATGTAACCATCATATATCGTCGCTTATTTTTCGATAAACATGAACTCAGCAATTCTCACGTCGTGCAACTTTTGGACAGAATGACAGAGCAAAGTATGTGAATGTATTTCTGAACCACCTTGTGTCTTGGAATGCTGCAACGGAACGCTTGACATGGGGAGAGGCTTTTGTGAACTTGGGAGAACCTAAAATTCCTGTTGCATAA

Protein sequence

>MS.gene70566.t1

MASCYLNPIPTSSRLISPDLCTKFKIPKLLHRKKRFGVLPRSSKVTAFYGLKTPPYEHDALEPYLSKQTIDMHWGEHHRNFVEGLNEQLGKDDILYGYTLDELVKVTYNNGNPSPEFNNAAEVWNHDFFWESMQPGGGDMPILGLLQQIEKDFGSFTNFKEKFTEAALTLFGSGWVWLVLKREEKQLAIVKTSNAICPIVWGDIPIINLDLWEHAYYLDYKNDRAKYVNVFLNHLVSWNAATERLTWGEAFVNLGEPKIPVA