Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72026.t1 | XP_013462044.1 | 98.3 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 1.30E-129 | 472.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72026.t1 | Q9XI47 | 44.4 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 2.4e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72026.t1 | A0A072V207 | 98.3 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 9.7e-130 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene72026 | 0.806327 | 8.68E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene72026 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene72026 | 0.830249 | 3.27E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene72026 | 0.811745 | 6.00E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene72026 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene049666 | MS.gene72026 | 0.832704 | 8.12E-56 | -1.69E-46 |
| MS.gene050355 | MS.gene72026 | 0.829192 | 5.90E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene72026 | 0.802901 | 4.50E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene72026 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene72026 | 0.830113 | 3.53E-55 | -1.69E-46 |
| MS.gene051832 | MS.gene72026 | 0.849495 | 3.12E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene72026 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene72026 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene72026 | 0.818553 | 1.85E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene72026 | 0.824775 | 6.72E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene72026 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene72026 | 0.836116 | 1.13E-56 | -1.69E-46 |
| MS.gene052717 | MS.gene72026 | 0.827506 | 1.51E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene72026 | 0.83313 | 6.36E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene72026 | 0.829871 | 4.04E-55 | -1.69E-46 |
| MS.gene05365 | MS.gene72026 | 0.854375 | 1.28E-61 | -1.69E-46 |
| MS.gene053963 | MS.gene72026 | 0.83066 | 2.59E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene72026 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene72026 | 0.808321 | 3.28E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene72026 | 0.805162 | 1.52E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene72026 | 0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene055586 | MS.gene72026 | 0.826498 | 2.62E-54 | -1.69E-46 |
| MS.gene055589 | MS.gene72026 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene72026 | 0.81153 | 6.69E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene72026 | 0.821274 | 4.40E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene72026 | 0.808035 | 3.77E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene72026 | 0.828477 | 8.80E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene72026 | 0.816812 | 4.56E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene72026 | 0.822138 | 2.78E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene72026 | 0.812031 | 5.20E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene72026 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene72026 | 0.810296 | 1.24E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene72026 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene72026 | 0.801494 | 8.77E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene72026 | -0.826957 | 2.04E-54 | -1.69E-46 |
| MS.gene059935 | MS.gene72026 | 0.851485 | 8.61E-61 | -1.69E-46 |
| MS.gene060365 | MS.gene72026 | 0.816806 | 4.57E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene72026 | 0.804392 | 2.21E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene72026 | 0.811374 | 7.23E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene72026 | 0.811609 | 6.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72026.t1 | MTR_3g110260 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 1.29e-173 | 476 |
| MS.gene72026.t1 | MTR_8g061040 | 40.076 | 262 | 125 | 4 | 1 | 232 | 1 | 260 | 5.75e-65 | 206 |
| MS.gene72026.t1 | MTR_8g014075 | 38.800 | 250 | 130 | 4 | 1 | 230 | 1 | 247 | 1.75e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72026.t1 | AT1G15215 | 44.355 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 9.70e-66 | 204 |
| MS.gene72026.t1 | AT3G18380 | 39.068 | 279 | 118 | 4 | 1 | 232 | 1 | 274 | 2.57e-61 | 196 |
| MS.gene72026.t1 | AT1G15215 | 44.118 | 238 | 102 | 4 | 12 | 220 | 11 | 246 | 5.14e-61 | 192 |
| MS.gene72026.t1 | AT1G15215 | 43.802 | 242 | 105 | 4 | 12 | 224 | 11 | 250 | 1.05e-60 | 191 |
| MS.gene72026.t1 | AT3G18380 | 38.929 | 280 | 118 | 5 | 1 | 232 | 1 | 275 | 1.71e-59 | 191 |
| MS.gene72026.t1 | AT3G18380 | 39.416 | 274 | 122 | 7 | 1 | 232 | 1 | 272 | 1.14e-58 | 189 |
| MS.gene72026.t1 | AT1G15215 | 35.484 | 155 | 69 | 4 | 12 | 137 | 11 | 163 | 1.99e-18 | 79.7 |
Find 45 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCAGATTGAGAAAA+TGG | 0.159542 | 3.4:-95558492 | MS.gene72026:intron |
| GAACATAGTCTCCAACTTTC+AGG | 0.226239 | 3.4:+95556508 | None:intergenic |
| GAAAACAGACTTGAAACTTT+TGG | 0.264857 | 3.4:+95558406 | None:intergenic |
| CGAAAGGAACTGAGCGTTCC+CGG | 0.320535 | 3.4:+95556550 | None:intergenic |
| AGAGTCAGATTTGTTGGGTT+TGG | 0.339869 | 3.4:-95556612 | MS.gene72026:CDS |
| AGCTTATCATCTGGTCGTGC+TGG | 0.372792 | 3.4:-95558311 | MS.gene72026:CDS |
| AGACTATGTTCTGTGCTTCC+AGG | 0.376950 | 3.4:-95556496 | MS.gene72026:intron |
| AAAAGTACCTCAAAATGAAT+TGG | 0.377374 | 3.4:-95558109 | MS.gene72026:CDS |
| GGATATCATGCATTCTCCTT+TGG | 0.380382 | 3.4:+95556344 | None:intergenic |
| GAAGTCAGAGTCAGATTTGT+TGG | 0.404906 | 3.4:-95556618 | MS.gene72026:CDS |
| AAATGTGACACCTGCAACCT+CGG | 0.422569 | 3.4:+95556323 | None:intergenic |
| CTGGGAAACCTGTCATCAAA+TGG | 0.437508 | 3.4:-95558292 | MS.gene72026:CDS |
| GTCATGTATATCTAAGATCT+TGG | 0.438432 | 3.4:+95556151 | None:intergenic |
| GTAGGAAGGTACCTCAGAAT+TGG | 0.440658 | 3.4:+95558561 | None:intergenic |
| ACCTGAGTCCATTTGATGAC+AGG | 0.456466 | 3.4:+95558284 | None:intergenic |
| TTCCAACTCTGATGAGTCTC+GGG | 0.471097 | 3.4:+95557627 | None:intergenic |
| AAGTCAGAGTCAGATTTGTT+GGG | 0.473120 | 3.4:-95556617 | MS.gene72026:CDS |
| TTGTCTTGTAGCTTATCATC+TGG | 0.483456 | 3.4:-95558320 | MS.gene72026:intron |
| GCACACAGATTTCTTAGCAC+AGG | 0.502053 | 3.4:-95556736 | MS.gene72026:CDS |
| CACACAGATTTCTTAGCACA+GGG | 0.505636 | 3.4:-95556735 | MS.gene72026:CDS |
| TTGCTAAGGGAATCATCAAA+AGG | 0.520977 | 3.4:-95558464 | MS.gene72026:CDS |
| ATTCCAACTCTGATGAGTCT+CGG | 0.521550 | 3.4:+95557626 | None:intergenic |
| CTCAGTTCCTTTCGAGAACA+CGG | 0.527058 | 3.4:-95556541 | MS.gene72026:CDS |
| GTCTGACCTTCCTTGCATTG+AGG | 0.531906 | 3.4:+95558081 | None:intergenic |
| ATTTGTTGGGTTTGGAGCTG+AGG | 0.536262 | 3.4:-95556604 | MS.gene72026:CDS |
| TGCATGATATCCGAGGTTGC+AGG | 0.537901 | 3.4:-95556333 | MS.gene72026:CDS |
| GCATATGTGCTCACCATGCT+TGG | 0.545702 | 3.4:+95557581 | None:intergenic |
| CACCCGAGACTCATCAGAGT+TGG | 0.547609 | 3.4:-95557629 | MS.gene72026:CDS |
| GCTTATCATCTGGTCGTGCT+GGG | 0.552961 | 3.4:-95558310 | MS.gene72026:CDS |
| TTCTGGATTCACCAATTCTG+AGG | 0.559706 | 3.4:-95558572 | MS.gene72026:intron |
| GAGTGTTCCAACCTGAAAGT+TGG | 0.564740 | 3.4:-95556519 | MS.gene72026:CDS |
| ATAGTCTCCAACTTTCAGGT+TGG | 0.570305 | 3.4:+95556512 | None:intergenic |
| ATTGGTTTCTCCTCAATGCA+AGG | 0.583252 | 3.4:-95558091 | MS.gene72026:CDS |
| TCTAGGAAAGAGTTCGCTTG+AGG | 0.588698 | 3.4:-95556189 | MS.gene72026:intron |
| GAACACTCCGTGTTCTCGAA+AGG | 0.592495 | 3.4:+95556534 | None:intergenic |
| ACCTGTCATCAAATGGACTC+AGG | 0.592515 | 3.4:-95558285 | MS.gene72026:intron |
| CTCACATTGTAGAGATCCAA+AGG | 0.594628 | 3.4:-95556360 | MS.gene72026:CDS |
| TGGAGCTGAGGAAGATGAGT+GGG | 0.595934 | 3.4:-95556592 | MS.gene72026:CDS |
| GATCTTCGAAAGACCAAGCA+TGG | 0.600049 | 3.4:-95557594 | MS.gene72026:intron |
| GTTTCTCCTCAATGCAAGGA+AGG | 0.620933 | 3.4:-95558087 | MS.gene72026:intron |
| ATATCTAAGATCTTGGTCTG+TGG | 0.670538 | 3.4:+95556158 | None:intergenic |
| TTGGAGCTGAGGAAGATGAG+TGG | 0.671942 | 3.4:-95556593 | MS.gene72026:CDS |
| AGGAGAATGCATGATATCCG+AGG | 0.689625 | 3.4:-95556340 | MS.gene72026:CDS |
| ACACAGATTTCTTAGCACAG+GGG | 0.750555 | 3.4:-95556734 | MS.gene72026:CDS |
| ATATGATCACGACAACAACG+AGG | 0.764532 | 3.4:-95556293 | MS.gene72026:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATGATTTAGT+TGG | + | chr3.4:95557882-95557901 | None:intergenic | 15.0% |
| !! | ATATAATTGTAAAAACTTAC+AGG | + | chr3.4:95558063-95558082 | None:intergenic | 15.0% |
| !! | ATATATACAACTTAAATGAA+TGG | + | chr3.4:95557746-95557765 | None:intergenic | 15.0% |
| !! | CTAACTAAATAAAAAAGTAA+AGG | + | chr3.4:95557027-95557046 | None:intergenic | 15.0% |
| !! | TAAAAAATAACAATTTAGTG+TGG | + | chr3.4:95557341-95557360 | None:intergenic | 15.0% |
| !! | TAAAATTCCCATAAAAATAA+AGG | + | chr3.4:95556601-95556620 | None:intergenic | 15.0% |
| !! | TTATGGTTTATAGTTAAAAT+TGG | + | chr3.4:95557801-95557820 | None:intergenic | 15.0% |
| !!! | AATTGTTCCTTTATTTTTAT+GGG | - | chr3.4:95556591-95556610 | MS.gene72026:CDS | 15.0% |
| !!! | TAATTGTTCCTTTATTTTTA+TGG | - | chr3.4:95556590-95556609 | MS.gene72026:CDS | 15.0% |
| !!! | TTTTCTTTTTGTTATATTCT+AGG | - | chr3.4:95558563-95558582 | MS.gene72026:intron | 15.0% |
| !! | AAATGTTTAATGCATAATTG+AGG | + | chr3.4:95557474-95557493 | None:intergenic | 20.0% |
| !! | ATTATAAATCACACATGAAA+TGG | + | chr3.4:95558534-95558553 | None:intergenic | 20.0% |
| !! | CTGAAATGAAATAAGATTAA+AGG | + | chr3.4:95556267-95556286 | None:intergenic | 20.0% |
| !! | TGAAATAAGATTAAAGGTAA+CGG | + | chr3.4:95556261-95556280 | None:intergenic | 20.0% |
| !!! | AACTTTTTCACATCTATAAT+AGG | - | chr3.4:95557526-95557545 | MS.gene72026:intron | 20.0% |
| !!! | ATTTTTTAGCATGTATGATA+CGG | + | chr3.4:95557619-95557638 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTCACTGAA+AGG | - | chr3.4:95557267-95557286 | MS.gene72026:intron | 20.0% |
| !!! | TAATTAAAAGTGCATTTCAA+AGG | + | chr3.4:95556572-95556591 | None:intergenic | 20.0% |
| ! | AAGATTCTTTGACTAAAATC+TGG | - | chr3.4:95557711-95557730 | MS.gene72026:intron | 25.0% |
| ! | AGAAAATGGAAAAATTGCTA+AGG | - | chr3.4:95556291-95556310 | MS.gene72026:intron | 25.0% |
| ! | AGTAAAAGAAAAAAGTAGGA+AGG | + | chr3.4:95556225-95556244 | None:intergenic | 25.0% |
| ! | ATACATGCTAAAAAATTGTG+AGG | - | chr3.4:95557623-95557642 | MS.gene72026:CDS | 25.0% |
| ! | ATGAAGCTATAAACAATCTA+TGG | + | chr3.4:95557393-95557412 | None:intergenic | 25.0% |
| ! | ATGTAATTTACTTCAGAATG+CGG | - | chr3.4:95556844-95556863 | MS.gene72026:intron | 25.0% |
| ! | CCATAAAACAGATAGTATAT+AGG | - | chr3.4:95557815-95557834 | MS.gene72026:intron | 25.0% |
| ! | GAAAATGGAAAAATTGCTAA+GGG | - | chr3.4:95556292-95556311 | MS.gene72026:intron | 25.0% |
| ! | GTAGTATTCAGTTAATTATC+TGG | - | chr3.4:95557562-95557581 | MS.gene72026:intron | 25.0% |
| ! | GTTGTATATATGTATATGTG+TGG | - | chr3.4:95557755-95557774 | MS.gene72026:intron | 25.0% |
| ! | TCAACATAAAAAATTCAGTC+CGG | - | chr3.4:95558200-95558219 | MS.gene72026:intron | 25.0% |
| ! | TGAGAGTAAAAGAAAAAAGT+AGG | + | chr3.4:95556229-95556248 | None:intergenic | 25.0% |
| ! | TTCATTTCAGATTGAGAAAA+TGG | - | chr3.4:95556277-95556296 | MS.gene72026:intron | 25.0% |
| !! | CCTATATACTATCTGTTTTA+TGG | + | chr3.4:95557818-95557837 | None:intergenic | 25.0% |
| !! | CTTTTATAACTATACATCGA+TGG | - | chr3.4:95557686-95557705 | MS.gene72026:intron | 25.0% |
| !! | TTATGGGAATTTTAGATACA+TGG | - | chr3.4:95556607-95556626 | MS.gene72026:CDS | 25.0% |
| !!! | AAAAGTACCTCAAAATGAAT+TGG | - | chr3.4:95556660-95556679 | MS.gene72026:intron | 25.0% |
| !!! | AATTCATTTTGAGGTACTTT+TGG | + | chr3.4:95556661-95556680 | None:intergenic | 25.0% |
| !!! | ATGTTAAACTGCATTGATTA+TGG | - | chr3.4:95556894-95556913 | MS.gene72026:intron | 25.0% |
| !!! | GTAAGAGTTTTGAAAATCAT+TGG | + | chr3.4:95557857-95557876 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGGTAAAAATCGA+GGG | + | chr3.4:95556342-95556361 | None:intergenic | 25.0% |
| !!! | TTTTTTAGCATGTATGATAC+GGG | + | chr3.4:95557618-95557637 | None:intergenic | 25.0% |
| AAAATCTAGTACACCCTATA+AGG | + | chr3.4:95558100-95558119 | None:intergenic | 30.0% | |
| AAATCTAGTACACCCTATAA+GGG | + | chr3.4:95558099-95558118 | None:intergenic | 30.0% | |
| AACTATCCTAACAACGTTTA+AGG | + | chr3.4:95556725-95556744 | None:intergenic | 30.0% | |
| AAGTAAAGGAAAACAGAAAG+TGG | + | chr3.4:95557013-95557032 | None:intergenic | 30.0% | |
| AATCATTGGAGGAAGAAAAT+TGG | + | chr3.4:95557843-95557862 | None:intergenic | 30.0% | |
| ACATTACCTTAAACGTTGTT+AGG | - | chr3.4:95556716-95556735 | MS.gene72026:intron | 30.0% | |
| AGTAAAGGAAAACAGAAAGT+GGG | + | chr3.4:95557012-95557031 | None:intergenic | 30.0% | |
| ATATATGCAGAATTCACGAA+TGG | + | chr3.4:95557238-95557257 | None:intergenic | 30.0% | |
| CAACATAAAAAATTCAGTCC+GGG | - | chr3.4:95558201-95558220 | MS.gene72026:intron | 30.0% | |
| TACAATTTGTCCAAGTCTAA+AGG | - | chr3.4:95557978-95557997 | MS.gene72026:intron | 30.0% | |
| TCCTGTGTATTTCAATGTTT+GGG | - | chr3.4:95556779-95556798 | MS.gene72026:intron | 30.0% | |
| TTAAACGTTGTTAGGATAGT+TGG | - | chr3.4:95556724-95556743 | MS.gene72026:intron | 30.0% | |
| TTGGTGAATCCAGAAAAAAT+AGG | + | chr3.4:95556192-95556211 | None:intergenic | 30.0% | |
| ! | AACAACGTTTAAGGTAATGT+AGG | + | chr3.4:95556716-95556735 | None:intergenic | 30.0% |
| ! | AACAGTTTCTCCTTTTGTAA+AGG | - | chr3.4:95558129-95558148 | MS.gene72026:CDS | 30.0% |
| ! | ATCATTGTTTCTTTGTTGGT+CGG | - | chr3.4:95556393-95556412 | MS.gene72026:CDS | 30.0% |
| ! | CTCAATCATTGTTTCTTTGT+TGG | - | chr3.4:95556389-95556408 | MS.gene72026:CDS | 30.0% |
| ! | GAAAACAGACTTGAAACTTT+TGG | + | chr3.4:95556366-95556385 | None:intergenic | 30.0% |
| ! | GACAGTTTCAATGTGTTTTT+AGG | - | chr3.4:95558356-95558375 | MS.gene72026:intron | 30.0% |
| !!! | AGAGTTTTGAAAATCATTGG+AGG | + | chr3.4:95557854-95557873 | None:intergenic | 30.0% |
| !!! | CTAGTTTTTGGTAAAAATCG+AGG | + | chr3.4:95556343-95556362 | None:intergenic | 30.0% |
| !!! | CTTCAATGCCATTTTTACTT+TGG | - | chr3.4:95557363-95557382 | MS.gene72026:intron | 30.0% |
| !!! | GTTTTAAGAAAATGACACCA+AGG | - | chr3.4:95556933-95556952 | MS.gene72026:intron | 30.0% |
| !!! | TGAAACTTTTGGCTAGTTTT+TGG | + | chr3.4:95556355-95556374 | None:intergenic | 30.0% |
| !!! | TTTCAATGTGTTTTTAGGAG+AGG | - | chr3.4:95558361-95558380 | MS.gene72026:intron | 30.0% |
| AAACTTTGACCTAAATCACC+TGG | + | chr3.4:95558294-95558313 | None:intergenic | 35.0% | |
| AAAGGAGAAACTGTTTAAGC+TGG | + | chr3.4:95558124-95558143 | None:intergenic | 35.0% | |
| AATCTAGTACACCCTATAAG+GGG | + | chr3.4:95558098-95558117 | None:intergenic | 35.0% | |
| ACTCTGACTTCCTTTACAAA+AGG | + | chr3.4:95558142-95558161 | None:intergenic | 35.0% | |
| ATGGACCACCAAAGTAAAAA+TGG | + | chr3.4:95557374-95557393 | None:intergenic | 35.0% | |
| ATTTCAATGTTTGGGCCTTT+AGG | - | chr3.4:95556787-95556806 | MS.gene72026:intron | 35.0% | |
| CAGTTAATTATCTGGTGTTC+TGG | - | chr3.4:95557570-95557589 | MS.gene72026:intron | 35.0% | |
| CTCAAATATTTGCGAACACA+AGG | + | chr3.4:95557056-95557075 | None:intergenic | 35.0% | |
| GAAAAAATAGGTCTGTTACG+AGG | + | chr3.4:95556180-95556199 | None:intergenic | 35.0% | |
| GATGTCCTTTAACTGTTCTA+TGG | + | chr3.4:95558322-95558341 | None:intergenic | 35.0% | |
| GTCCTGTGTATTTCAATGTT+TGG | - | chr3.4:95556778-95556797 | MS.gene72026:intron | 35.0% | |
| TTCATAGCTTTCCCCTTATA+GGG | - | chr3.4:95558084-95558103 | MS.gene72026:intron | 35.0% | |
| TTGCTAAGGGAATCATCAAA+AGG | - | chr3.4:95556305-95556324 | MS.gene72026:CDS | 35.0% | |
| TTGTCTTGTAGCTTATCATC+TGG | - | chr3.4:95556449-95556468 | MS.gene72026:intron | 35.0% | |
| TTTCAATGTTTGGGCCTTTA+GGG | - | chr3.4:95556788-95556807 | MS.gene72026:intron | 35.0% | |
| ! | AAGTCAGAGTCAGATTTGTT+GGG | - | chr3.4:95558152-95558171 | MS.gene72026:intron | 35.0% |
| ! | ATTTTCGACAATGACATCAG+TGG | - | chr3.4:95557943-95557962 | MS.gene72026:intron | 35.0% |
| ! | GGAGAAACCAATTCATTTTG+AGG | + | chr3.4:95556670-95556689 | None:intergenic | 35.0% |
| ! | GGGAATTTTAGATACATGGT+TGG | - | chr3.4:95556611-95556630 | MS.gene72026:CDS | 35.0% |
| ! | TGTGGATTAATATCAGCATG+TGG | + | chr3.4:95557323-95557342 | None:intergenic | 35.0% |
| !!! | CAATGCCATTTTTACTTTGG+TGG | - | chr3.4:95557366-95557385 | MS.gene72026:intron | 35.0% |
| !!! | CGTAACAGACCTATTTTTTC+TGG | - | chr3.4:95556180-95556199 | MS.gene72026:CDS | 35.0% |
| !!! | GTCTGAAATGAGTTTTTTGC+AGG | - | chr3.4:95557111-95557130 | MS.gene72026:intron | 35.0% |
| !!! | TGGGTGTTATTTCTGCATTT+TGG | - | chr3.4:95558499-95558518 | MS.gene72026:intron | 35.0% |
| ACACAGATTTCTTAGCACAG+GGG | - | chr3.4:95558035-95558054 | MS.gene72026:intron | 40.0% | |
| AGAAAATGACACCAAGGACA+AGG | - | chr3.4:95556939-95556958 | MS.gene72026:intron | 40.0% | |
| AGCAATGAGGGACTATCAAA+AGG | - | chr3.4:95556974-95556993 | MS.gene72026:intron | 40.0% | |
| ATATGATCACGACAACAACG+AGG | - | chr3.4:95558476-95558495 | MS.gene72026:CDS | 40.0% | |
| ATTCCAACTCTGATGAGTCT+CGG | + | chr3.4:95557146-95557165 | None:intergenic | 40.0% | |
| CACACAGATTTCTTAGCACA+GGG | - | chr3.4:95558034-95558053 | MS.gene72026:intron | 40.0% | |
| CCTCACCATAGAACAGTTAA+AGG | - | chr3.4:95558314-95558333 | MS.gene72026:intron | 40.0% | |
| CCTTTAACTGTTCTATGGTG+AGG | + | chr3.4:95558317-95558336 | None:intergenic | 40.0% | |
| CTCACATTGTAGAGATCCAA+AGG | - | chr3.4:95558409-95558428 | MS.gene72026:intron | 40.0% | |
| GAACATAGTCTCCAACTTTC+AGG | + | chr3.4:95558264-95558283 | None:intergenic | 40.0% | |
| GAAGTCAGAGTCAGATTTGT+TGG | - | chr3.4:95558151-95558170 | MS.gene72026:intron | 40.0% | |
| GCCCAAACATTGAAATACAC+AGG | + | chr3.4:95556783-95556802 | None:intergenic | 40.0% | |
| GGATATCATGCATTCTCCTT+TGG | + | chr3.4:95558428-95558447 | None:intergenic | 40.0% | |
| GTTCATAGCTTTCCCCTTAT+AGG | - | chr3.4:95558083-95558102 | MS.gene72026:intron | 40.0% | |
| TTAAACCAGCACTTCTAGTG+AGG | - | chr3.4:95557084-95557103 | MS.gene72026:intron | 40.0% | |
| TTCTGGATTCACCAATTCTG+AGG | - | chr3.4:95556197-95556216 | MS.gene72026:intron | 40.0% | |
| ! | ATAGTCTCCAACTTTCAGGT+TGG | + | chr3.4:95558260-95558279 | None:intergenic | 40.0% |
| ! | ATTGGTTTCTCCTCAATGCA+AGG | - | chr3.4:95556678-95556697 | MS.gene72026:intron | 40.0% |
| ! | CATATCTGAAGTGACCCTAA+AGG | + | chr3.4:95556805-95556824 | None:intergenic | 40.0% |
| ! | TGTGGTGTGTTTCAAGTGAA+AGG | - | chr3.4:95557773-95557792 | MS.gene72026:intron | 40.0% |
| !! | AGAGTCAGATTTGTTGGGTT+TGG | - | chr3.4:95558157-95558176 | MS.gene72026:intron | 40.0% |
| AAATGTGACACCTGCAACCT+CGG | + | chr3.4:95558449-95558468 | None:intergenic | 45.0% | |
| AAGTGACTGGGAAGCAATGA+GGG | - | chr3.4:95556962-95556981 | MS.gene72026:intron | 45.0% | |
| AGACTATGTTCTGTGCTTCC+AGG | - | chr3.4:95558273-95558292 | MS.gene72026:intron | 45.0% | |
| AGGAGAATGCATGATATCCG+AGG | - | chr3.4:95558429-95558448 | MS.gene72026:CDS | 45.0% | |
| CACTGATCTCACTGTATTCC+TGG | - | chr3.4:95557413-95557432 | MS.gene72026:intron | 45.0% | |
| CTCAGTTCCTTTCGAGAACA+CGG | - | chr3.4:95558228-95558247 | MS.gene72026:intron | 45.0% | |
| CTGCAGCAAACCTTTAGACT+TGG | + | chr3.4:95557991-95558010 | None:intergenic | 45.0% | |
| CTGGGAAACCTGTCATCAAA+TGG | - | chr3.4:95556477-95556496 | MS.gene72026:intron | 45.0% | |
| GAGTGTTCCAACCTGAAAGT+TGG | - | chr3.4:95558250-95558269 | MS.gene72026:intron | 45.0% | |
| GATCTTCGAAAGACCAAGCA+TGG | - | chr3.4:95557175-95557194 | MS.gene72026:intron | 45.0% | |
| GCACACAGATTTCTTAGCAC+AGG | - | chr3.4:95558033-95558052 | MS.gene72026:intron | 45.0% | |
| GTTTCTCCTCAATGCAAGGA+AGG | - | chr3.4:95556682-95556701 | MS.gene72026:intron | 45.0% | |
| TCTAGGAAAGAGTTCGCTTG+AGG | - | chr3.4:95558580-95558599 | MS.gene72026:CDS | 45.0% | |
| TCTGTGCTTCCAGGTGATTT+AGG | - | chr3.4:95558282-95558301 | MS.gene72026:intron | 45.0% | |
| TTCCAACTCTGATGAGTCTC+GGG | + | chr3.4:95557145-95557164 | None:intergenic | 45.0% | |
| TTGCCTAGTCGTAGACATAC+AGG | - | chr3.4:95557914-95557933 | MS.gene72026:intron | 45.0% | |
| ! | ACCTGAGTCCATTTGATGAC+AGG | + | chr3.4:95556488-95556507 | None:intergenic | 45.0% |
| ! | ACCTGTCATCAAATGGACTC+AGG | - | chr3.4:95556484-95556503 | MS.gene72026:intron | 45.0% |
| ! | ATTTGTTGGGTTTGGAGCTG+AGG | - | chr3.4:95558165-95558184 | MS.gene72026:intron | 45.0% |
| ! | TGTCAAATCGAAAGCATGCC+AGG | + | chr3.4:95557434-95557453 | None:intergenic | 45.0% |
| !! | CAAGTCTAAAGGTTTGCTGC+AGG | - | chr3.4:95557989-95558008 | MS.gene72026:intron | 45.0% |
| !! | GAAGTGCTGGTTTAAGCAGT+TGG | + | chr3.4:95557079-95557098 | None:intergenic | 45.0% |
| !! | GAGGTACTTTTGGTGAGTCT+TGG | + | chr3.4:95556651-95556670 | None:intergenic | 45.0% |
| !! | GTAGGAAGGTACCTCAGAAT+TGG | + | chr3.4:95556211-95556230 | None:intergenic | 45.0% |
| ACCAAGGACAAGGAAGTGAC+TGG | - | chr3.4:95556949-95556968 | MS.gene72026:intron | 50.0% | |
| AGCTTATCATCTGGTCGTGC+TGG | - | chr3.4:95556458-95556477 | MS.gene72026:intron | 50.0% | |
| CCAAGGACAAGGAAGTGACT+GGG | - | chr3.4:95556950-95556969 | MS.gene72026:intron | 50.0% | |
| GAACACTCCGTGTTCTCGAA+AGG | + | chr3.4:95558238-95558257 | None:intergenic | 50.0% | |
| GAAGTGACTGGGAAGCAATG+AGG | - | chr3.4:95556961-95556980 | MS.gene72026:intron | 50.0% | |
| GATCACGACAACAACGAGGT+GGG | - | chr3.4:95558480-95558499 | MS.gene72026:CDS | 50.0% | |
| GCATATGTGCTCACCATGCT+TGG | + | chr3.4:95557191-95557210 | None:intergenic | 50.0% | |
| GCTTATCATCTGGTCGTGCT+GGG | - | chr3.4:95556459-95556478 | MS.gene72026:intron | 50.0% | |
| GTCTGACCTTCCTTGCATTG+AGG | + | chr3.4:95556691-95556710 | None:intergenic | 50.0% | |
| GTGCCTGTATGTCTACGACT+AGG | + | chr3.4:95557920-95557939 | None:intergenic | 50.0% | |
| TGATCACGACAACAACGAGG+TGG | - | chr3.4:95558479-95558498 | MS.gene72026:CDS | 50.0% | |
| TGCATGATATCCGAGGTTGC+AGG | - | chr3.4:95558436-95558455 | MS.gene72026:CDS | 50.0% | |
| TGGAGCTGAGGAAGATGAGT+GGG | - | chr3.4:95558177-95558196 | MS.gene72026:intron | 50.0% | |
| TTGGAGCTGAGGAAGATGAG+TGG | - | chr3.4:95558176-95558195 | MS.gene72026:intron | 50.0% | |
| ! | CTCAACCTCACTAGAAGTGC+TGG | + | chr3.4:95557092-95557111 | None:intergenic | 50.0% |
| CACCCGAGACTCATCAGAGT+TGG | - | chr3.4:95557140-95557159 | MS.gene72026:intron | 55.0% | |
| CCCAGTCACTTCCTTGTCCT+TGG | + | chr3.4:95556953-95556972 | None:intergenic | 55.0% | |
| CGAAAGGAACTGAGCGTTCC+CGG | + | chr3.4:95558222-95558241 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95556162 | 95558629 | 95556162 | ID=MS.gene72026 |
| chr3.4 | mRNA | 95556162 | 95558629 | 95556162 | ID=MS.gene72026.t1;Parent=MS.gene72026 |
| chr3.4 | exon | 95558573 | 95558629 | 95558573 | ID=MS.gene72026.t1.exon1;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95558573 | 95558629 | 95558573 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95558416 | 95558504 | 95558416 | ID=MS.gene72026.t1.exon2;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95558416 | 95558504 | 95558416 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95558286 | 95558331 | 95558286 | ID=MS.gene72026.t1.exon3;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95558286 | 95558331 | 95558286 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95558088 | 95558169 | 95558088 | ID=MS.gene72026.t1.exon4;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95558088 | 95558169 | 95558088 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95557595 | 95557658 | 95557595 | ID=MS.gene72026.t1.exon5;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95557595 | 95557658 | 95557595 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95556729 | 95556780 | 95556729 | ID=MS.gene72026.t1.exon6;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95556729 | 95556780 | 95556729 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95556497 | 95556640 | 95556497 | ID=MS.gene72026.t1.exon7;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95556497 | 95556640 | 95556497 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95556294 | 95556413 | 95556294 | ID=MS.gene72026.t1.exon8;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95556294 | 95556413 | 95556294 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| chr3.4 | exon | 95556162 | 95556206 | 95556162 | ID=MS.gene72026.t1.exon9;Parent=MS.gene72026.t1 |
| chr3.4 | CDS | 95556162 | 95556206 | 95556162 | ID=cds.MS.gene72026.t1;Parent=MS.gene72026.t1 |
| Gene Sequence |
| Protein sequence |
