Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75134.t1 | KHN23130.1 | 94.8 | 115 | 6 | 0 | 1 | 115 | 555 | 669 | 1.90E-55 | 224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75134.t1 | Q59536 | 65.2 | 115 | 40 | 0 | 1 | 115 | 546 | 660 | 1.4e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75134.t1 | I1NF29 | 94.8 | 115 | 6 | 0 | 1 | 115 | 628 | 742 | 1.3e-55 | 224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene75134 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene75134 | 0.819394 | 1.19E-52 | -1.69E-46 |
| MS.gene050020 | MS.gene75134 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene75134 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene75134 | 0.840027 | 1.11E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene75134 | 0.800177 | 1.63E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene75134 | 0.800809 | 1.21E-48 | -1.69E-46 |
| MS.gene05157 | MS.gene75134 | 0.804535 | 2.06E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene75134 | 0.809556 | 1.79E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene75134 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene75134 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene75134 | 0.806569 | 7.72E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene75134 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene75134 | 0.806052 | 9.92E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene75134 | 0.831064 | 2.06E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene75134 | 0.814751 | 1.31E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene75134 | 0.811959 | 5.39E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene75134 | 0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene75134 | 0.821008 | 5.07E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene75134 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene75134 | 0.805081 | 1.59E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene75134 | 0.832844 | 7.49E-56 | -1.69E-46 |
| MS.gene053967 | MS.gene75134 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene75134 | 0.822663 | 2.10E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene75134 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene75134 | 0.822867 | 1.88E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene75134 | 0.806825 | 6.81E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene75134 | 0.801478 | 8.83E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene75134 | 0.825092 | 5.66E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene75134 | 0.808664 | 2.77E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene75134 | 0.846893 | 1.63E-59 | -1.69E-46 |
| MS.gene05604 | MS.gene75134 | 0.811793 | 5.86E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene75134 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene75134 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene75134 | 0.833542 | 5.02E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene75134 | 0.811263 | 7.64E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene75134 | 0.814944 | 1.19E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene75134 | 0.823372 | 1.44E-53 | -1.69E-46 |
| MS.gene057414 | MS.gene75134 | 0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene75134 | 0.81242 | 4.28E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene75134 | 0.813912 | 2.01E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene75134 | 0.810666 | 1.03E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene75134 | 0.819601 | 1.07E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene75134 | 0.825455 | 4.64E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene75134 | 0.819823 | 9.48E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene75134 | 0.825042 | 5.82E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene75134 | 0.808833 | 2.55E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene75134 | 0.803869 | 2.84E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene75134 | 0.806703 | 7.23E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene75134 | 0.836967 | 6.86E-57 | -1.69E-46 |
| MS.gene060781 | MS.gene75134 | 0.813469 | 2.52E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene75134 | 0.812196 | 4.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75134.t1 | MTR_1g115230 | 93.913 | 115 | 7 | 0 | 1 | 115 | 564 | 678 | 1.79e-71 | 226 |
| MS.gene75134.t1 | MTR_5g048280 | 38.983 | 118 | 69 | 2 | 1 | 115 | 662 | 779 | 1.11e-21 | 89.0 |
| MS.gene75134.t1 | MTR_8g079030 | 41.053 | 95 | 54 | 2 | 3 | 96 | 655 | 748 | 1.54e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75134.t1 | AT1G50380 | 83.478 | 115 | 19 | 0 | 1 | 115 | 571 | 685 | 1.53e-64 | 207 |
| MS.gene75134.t1 | AT1G50380 | 83.478 | 115 | 19 | 0 | 1 | 115 | 637 | 751 | 3.80e-64 | 207 |
| MS.gene75134.t1 | AT1G69020 | 40.678 | 118 | 67 | 2 | 1 | 115 | 616 | 733 | 2.84e-21 | 87.8 |
| MS.gene75134.t1 | AT1G69020 | 40.678 | 118 | 67 | 2 | 1 | 115 | 648 | 765 | 3.27e-21 | 87.8 |
| MS.gene75134.t1 | AT5G66960 | 42.105 | 95 | 53 | 2 | 3 | 96 | 661 | 754 | 7.29e-15 | 69.7 |
Find 33 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTACAGCTGGATTAAA+TGG | 0.255776 | 1.1:-80839556 | MS.gene75134:intron |
| TACATTATCAACAAGGGAAT+AGG | 0.376538 | 1.1:+80839748 | None:intergenic |
| TGCTGTTGCCAGAGTACCTT+TGG | 0.379745 | 1.1:-80841749 | MS.gene75134:CDS |
| TGTTGTTTAAATGTGAGCTT+GGG | 0.399931 | 1.1:-80839106 | MS.gene75134:CDS |
| TTTAAATGTGAGCTTGGGGC+TGG | 0.402664 | 1.1:-80839101 | MS.gene75134:CDS |
| CCACATATTCTTGTTACAGC+TGG | 0.425203 | 1.1:-80839565 | MS.gene75134:CDS |
| CAAAGTTTGTGGCAAAATTG+AGG | 0.443374 | 1.1:-80839154 | MS.gene75134:CDS |
| GAAGTAGTGAGAGGAATAGT+TGG | 0.463287 | 1.1:+80841700 | None:intergenic |
| AAAGTTTGTGGCAAAATTGA+GGG | 0.472675 | 1.1:-80839153 | MS.gene75134:CDS |
| AAGTAGAATTCCTCCTTCCT+AGG | 0.474833 | 1.1:+80839782 | None:intergenic |
| CCAGCTGTAACAAGAATATG+TGG | 0.480307 | 1.1:+80839565 | None:intergenic |
| CTGTTGTTTAAATGTGAGCT+TGG | 0.484448 | 1.1:-80839107 | MS.gene75134:CDS |
| TTCTGAACCTGCAAAGTTTG+TGG | 0.489176 | 1.1:-80839165 | MS.gene75134:CDS |
| TATGAGACCGGATTTATTCA+AGG | 0.499871 | 1.1:-80841773 | MS.gene75134:CDS |
| TGTAGGAATGGGGTGATCCT+AGG | 0.505042 | 1.1:-80839799 | MS.gene75134:intron |
| TTCCTCTCACTACTTCCGAC+TGG | 0.515826 | 1.1:-80841693 | MS.gene75134:CDS |
| ACAGCAGCCTTGAATAAATC+CGG | 0.515832 | 1.1:+80841766 | None:intergenic |
| AACATCCACCAAAGGTACTC+TGG | 0.534806 | 1.1:+80841741 | None:intergenic |
| TGTTGCCAGAGTACCTTTGG+TGG | 0.562757 | 1.1:-80841746 | MS.gene75134:CDS |
| TGGAGTTCTGAATATGAGAC+CGG | 0.565149 | 1.1:-80841785 | None:intergenic |
| TGTTCTTACATTATCAACAA+GGG | 0.574837 | 1.1:+80839742 | None:intergenic |
| TTGTTCTTACATTATCAACA+AGG | 0.588588 | 1.1:+80839741 | None:intergenic |
| GGAATGGGGTGATCCTAGGA+AGG | 0.598189 | 1.1:-80839795 | MS.gene75134:CDS |
| AAAGAAATTTACTTCCCAGT+CGG | 0.599604 | 1.1:+80841678 | None:intergenic |
| TCCTCTCACTACTTCCGACT+GGG | 0.600599 | 1.1:-80841692 | MS.gene75134:CDS |
| CTTATGTTACTGTAGGAATG+GGG | 0.605360 | 1.1:-80839809 | MS.gene75134:intron |
| TCCCAGTCGGAAGTAGTGAG+AGG | 0.656613 | 1.1:+80841691 | None:intergenic |
| GTTGTTTAAATGTGAGCTTG+GGG | 0.656860 | 1.1:-80839105 | MS.gene75134:CDS |
| GGTTCAGAATACAAAACACG+TGG | 0.664416 | 1.1:+80839179 | None:intergenic |
| CAGCTGTAACAAGAATATGT+GGG | 0.675217 | 1.1:+80839566 | None:intergenic |
| ATGGGGTGATCCTAGGAAGG+AGG | 0.677198 | 1.1:-80839792 | MS.gene75134:CDS |
| GTTGTCACAACATCCACCAA+AGG | 0.686944 | 1.1:+80841733 | None:intergenic |
| GTTCAGAATACAAAACACGT+GGG | 0.759019 | 1.1:+80839180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATATTAATTTTTT+TGG | + | chr1.1:80839851-80839870 | None:intergenic | 0.0% |
| !! | AATATAAATAAATAGTGTTT+AGG | - | chr1.1:80841447-80841466 | MS.gene75134:intron | 10.0% |
| !!! | TGTGTTTTATTTTATATAAA+GGG | + | chr1.1:80839704-80839723 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTATTTTATATAA+AGG | + | chr1.1:80839705-80839724 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGAAATTCTAT+AGG | - | chr1.1:80840108-80840127 | MS.gene75134:intron | 10.0% |
| !! | TAAAACATTCTATTATTTAG+TGG | - | chr1.1:80841366-80841385 | MS.gene75134:intron | 15.0% |
| !!! | TAATTTTTTTGGAAACAAAT+TGG | + | chr1.1:80839840-80839859 | None:intergenic | 15.0% |
| !!! | TTTTATATAAAGGGTAAATT+TGG | + | chr1.1:80839695-80839714 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACATGCCA+GGG | + | chr1.1:80840548-80840567 | None:intergenic | 20.0% |
| !! | AAAAATTAGAAATACATACC+TGG | - | chr1.1:80840344-80840363 | MS.gene75134:intron | 20.0% |
| !! | AAAATCAATTAAAACTAGAG+AGG | + | chr1.1:80839593-80839612 | None:intergenic | 20.0% |
| !! | AAATCATGTTGAAATTGTTT+CGG | + | chr1.1:80840712-80840731 | None:intergenic | 20.0% |
| !! | TATATAATCTAAGTTTGATC+TGG | + | chr1.1:80840147-80840166 | None:intergenic | 20.0% |
| !! | TGAGTATTCCAAAAAAAATT+CGG | - | chr1.1:80840303-80840322 | MS.gene75134:intron | 20.0% |
| !!! | AAACTTTTCCGAATTTTTTT+TGG | + | chr1.1:80840314-80840333 | None:intergenic | 20.0% |
| !!! | AATTTGTTTGTCTTTTAAAC+TGG | - | chr1.1:80840834-80840853 | MS.gene75134:intron | 20.0% |
| !!! | ATTTTATAACTTGTAAGAGA+AGG | - | chr1.1:80839482-80839501 | MS.gene75134:intron | 20.0% |
| !!! | GAATTTTAAAAGATTTGTAG+GGG | - | chr1.1:80840470-80840489 | MS.gene75134:intron | 20.0% |
| !!! | GGAATTTTAAAAGATTTGTA+GGG | - | chr1.1:80840469-80840488 | MS.gene75134:intron | 20.0% |
| !!! | GTAATGTTTTAACATTCTAT+TGG | - | chr1.1:80840073-80840092 | MS.gene75134:intron | 20.0% |
| !!! | TGGAATTTTAAAAGATTTGT+AGG | - | chr1.1:80840468-80840487 | MS.gene75134:intron | 20.0% |
| !!! | TTTGAATCATTTTCATATGT+TGG | + | chr1.1:80839217-80839236 | None:intergenic | 20.0% |
| !!! | TTTTTAAGAAATTCTATAGG+AGG | - | chr1.1:80840111-80840130 | MS.gene75134:intron | 20.0% |
| ! | AAAGGATTTATTGTGATTTC+CGG | - | chr1.1:80840222-80840241 | MS.gene75134:intron | 25.0% |
| ! | AAATCACAATAAATCCTTTC+CGG | + | chr1.1:80840221-80840240 | None:intergenic | 25.0% |
| ! | AAGAATAAAGCATGAGATTA+AGG | + | chr1.1:80840006-80840025 | None:intergenic | 25.0% |
| ! | AATCATGTTGAAATTGTTTC+GGG | + | chr1.1:80840711-80840730 | None:intergenic | 25.0% |
| ! | ACTCAGTTTATTTATCAGTT+TGG | + | chr1.1:80840616-80840635 | None:intergenic | 25.0% |
| ! | ATAAAACGTTAAATAGCACA+AGG | - | chr1.1:80840437-80840456 | MS.gene75134:intron | 25.0% |
| ! | CAAAAAAAAAAAAACATGCC+AGG | + | chr1.1:80840549-80840568 | None:intergenic | 25.0% |
| ! | GAAAAAATAAGGAAGGTTAA+AGG | + | chr1.1:80839549-80839568 | None:intergenic | 25.0% |
| ! | GAAGTTTATGTAAAATGTTG+GGG | + | chr1.1:80839673-80839692 | None:intergenic | 25.0% |
| ! | GGAAGTTTATGTAAAATGTT+GGG | + | chr1.1:80839674-80839693 | None:intergenic | 25.0% |
| ! | TAAAACGTTAAATAGCACAA+GGG | - | chr1.1:80840438-80840457 | MS.gene75134:intron | 25.0% |
| ! | TAAAACTCACATACTTATCT+CGG | + | chr1.1:80840907-80840926 | None:intergenic | 25.0% |
| ! | TAAAGTGATTTAGTAGTTTG+AGG | - | chr1.1:80841519-80841538 | MS.gene75134:intron | 25.0% |
| ! | TCAGACAAAAAATAAATAGG+CGG | + | chr1.1:80841162-80841181 | None:intergenic | 25.0% |
| ! | TGCTCAGACAAAAAATAAAT+AGG | + | chr1.1:80841165-80841184 | None:intergenic | 25.0% |
| ! | TGGAAGTTTATGTAAAATGT+TGG | + | chr1.1:80839675-80839694 | None:intergenic | 25.0% |
| ! | TGTTCTTACATTATCAACAA+GGG | + | chr1.1:80841109-80841128 | None:intergenic | 25.0% |
| ! | TTGATTGGAAAATTCTACTA+TGG | - | chr1.1:80841419-80841438 | MS.gene75134:intron | 25.0% |
| ! | TTGTTCTTACATTATCAACA+AGG | + | chr1.1:80841110-80841129 | None:intergenic | 25.0% |
| ! | TTTAAACTGGTATTAAGAAG+AGG | - | chr1.1:80840847-80840866 | MS.gene75134:intron | 25.0% |
| ! | TTTAGTGGTCACTAATAATT+TGG | - | chr1.1:80841381-80841400 | MS.gene75134:intron | 25.0% |
| !! | AAATTCTATAGGAGGATTTT+AGG | - | chr1.1:80840119-80840138 | MS.gene75134:intron | 25.0% |
| !! | AATTTTTATTCTCTCCTGTA+AGG | - | chr1.1:80841186-80841205 | MS.gene75134:intron | 25.0% |
| !! | ATATAATTTTGTGCACATAC+TGG | - | chr1.1:80840651-80840670 | MS.gene75134:intron | 25.0% |
| !! | ATCATTTTCATATGTTGGTA+TGG | + | chr1.1:80839212-80839231 | None:intergenic | 25.0% |
| !!! | AACATTTCTAGTATACATAC+CGG | + | chr1.1:80840244-80840263 | None:intergenic | 25.0% |
| !!! | AATTCGGAAAAGTTTTATAG+TGG | - | chr1.1:80840319-80840338 | MS.gene75134:intron | 25.0% |
| !!! | ACCATTTTTTTCAGAAAATG+TGG | + | chr1.1:80839743-80839762 | None:intergenic | 25.0% |
| !!! | ATGTTTTAACATTCTATTGG+AGG | - | chr1.1:80840076-80840095 | MS.gene75134:intron | 25.0% |
| !!! | ATTTTTTTCAGAAAATGTGG+GGG | + | chr1.1:80839740-80839759 | None:intergenic | 25.0% |
| !!! | CATTTTTTTCAGAAAATGTG+GGG | + | chr1.1:80839741-80839760 | None:intergenic | 25.0% |
| !!! | CCATTTTTTTCAGAAAATGT+GGG | + | chr1.1:80839742-80839761 | None:intergenic | 25.0% |
| !!! | CTGGCATGTTTTTTTTTTTT+TGG | - | chr1.1:80840547-80840566 | MS.gene75134:intron | 25.0% |
| !!! | GATTTCTTTTGCTTTTCTTT+TGG | - | chr1.1:80841000-80841019 | MS.gene75134:intron | 25.0% |
| !!! | TTGGAAAACTGTATTTTGAT+TGG | - | chr1.1:80841404-80841423 | MS.gene75134:intron | 25.0% |
| AAAAAATAAATAGGCGGTGA+AGG | + | chr1.1:80841156-80841175 | None:intergenic | 30.0% | |
| AAAACGTTAAATAGCACAAG+GGG | - | chr1.1:80840439-80840458 | MS.gene75134:intron | 30.0% | |
| AAAGAAATTTACTTCCCAGT+CGG | + | chr1.1:80839173-80839192 | None:intergenic | 30.0% | |
| AAAGTTTGTGGCAAAATTGA+GGG | - | chr1.1:80841695-80841714 | MS.gene75134:CDS | 30.0% | |
| AAGAAAGCTTACTGTTTGTT+AGG | + | chr1.1:80839790-80839809 | None:intergenic | 30.0% | |
| AAGGTCAATTAAAACTAGAG+AGG | + | chr1.1:80839530-80839549 | None:intergenic | 30.0% | |
| AAGTAAACAAGCAAATGTCT+CGG | - | chr1.1:80840790-80840809 | MS.gene75134:intron | 30.0% | |
| AATACAAATGCATGCTGTTA+GGG | + | chr1.1:80839425-80839444 | None:intergenic | 30.0% | |
| AGAACAAATACTGCACTTAA+TGG | - | chr1.1:80841123-80841142 | MS.gene75134:intron | 30.0% | |
| AGTATTCATTCGGAAAATGT+CGG | + | chr1.1:80839401-80839420 | None:intergenic | 30.0% | |
| ATTTCACGAAAATCTTGAAC+CGG | - | chr1.1:80840199-80840218 | MS.gene75134:intron | 30.0% | |
| CAAAATGAGACATTCTTACA+TGG | + | chr1.1:80841596-80841615 | None:intergenic | 30.0% | |
| CAATTAAAACTAGAGAGGAT+GGG | + | chr1.1:80839588-80839607 | None:intergenic | 30.0% | |
| CATTTGCTTGTTTACTTTCA+TGG | + | chr1.1:80840787-80840806 | None:intergenic | 30.0% | |
| GTCATGAGAGAGAAAAAATA+AGG | + | chr1.1:80839560-80839579 | None:intergenic | 30.0% | |
| TACATTATCAACAAGGGAAT+AGG | + | chr1.1:80841103-80841122 | None:intergenic | 30.0% | |
| TCAATTAAAACTAGAGAGGA+TGG | + | chr1.1:80839589-80839608 | None:intergenic | 30.0% | |
| TGAGAGAGAAAAAATAAGGA+AGG | + | chr1.1:80839556-80839575 | None:intergenic | 30.0% | |
| TGATTTCCTTATGTTACTGT+AGG | - | chr1.1:80841032-80841051 | MS.gene75134:intron | 30.0% | |
| ! | ATACTTTTAATGCATCAAGC+TGG | + | chr1.1:80840759-80840778 | None:intergenic | 30.0% |
| ! | CGAGTCTTACGAATAATTTT+CGG | - | chr1.1:80840269-80840288 | MS.gene75134:intron | 30.0% |
| ! | TGTTGTTTAAATGTGAGCTT+GGG | - | chr1.1:80841742-80841761 | MS.gene75134:CDS | 30.0% |
| !! | CCCACATTTTCTGAAAAAAA+TGG | - | chr1.1:80839739-80839758 | MS.gene75134:intron | 30.0% |
| !! | TCTCATGGTGTCTTTTAAAA+TGG | - | chr1.1:80839273-80839292 | MS.gene75134:intron | 30.0% |
| !!! | CTCATGGTGTCTTTTAAAAT+GGG | - | chr1.1:80839274-80839293 | MS.gene75134:intron | 30.0% |
| !!! | TTTTTTTGGTAAAACATCCC+TGG | - | chr1.1:80840561-80840580 | MS.gene75134:intron | 30.0% |
| AATACAGAAGTAACATGCCA+GGG | + | chr1.1:80840581-80840600 | None:intergenic | 35.0% | |
| AATAGCACAAGGGGTAAAAT+TGG | - | chr1.1:80840448-80840467 | MS.gene75134:intron | 35.0% | |
| AATTATATGACACAGCAGCA+AGG | + | chr1.1:80840639-80840658 | None:intergenic | 35.0% | |
| AGCTACTATTTGTAGCTTCA+TGG | + | chr1.1:80840735-80840754 | None:intergenic | 35.0% | |
| ATACAAATGCATGCTGTTAG+GGG | + | chr1.1:80839424-80839443 | None:intergenic | 35.0% | |
| ATACCTGGAAGAATATCATG+TGG | - | chr1.1:80840359-80840378 | MS.gene75134:intron | 35.0% | |
| CAAAGTTTGTGGCAAAATTG+AGG | - | chr1.1:80841694-80841713 | MS.gene75134:CDS | 35.0% | |
| CAATACAAATGCATGCTGTT+AGG | + | chr1.1:80839426-80839445 | None:intergenic | 35.0% | |
| CAGCTGTAACAAGAATATGT+GGG | + | chr1.1:80841285-80841304 | None:intergenic | 35.0% | |
| CCTTATGTTACTGTAGGAAT+GGG | - | chr1.1:80841038-80841057 | MS.gene75134:intron | 35.0% | |
| CGTTGAAAAGAATACGATCA+TGG | + | chr1.1:80839917-80839936 | None:intergenic | 35.0% | |
| CTTATGTTACTGTAGGAATG+GGG | - | chr1.1:80841039-80841058 | MS.gene75134:intron | 35.0% | |
| CTTGTTACAGCTGGATTAAA+TGG | - | chr1.1:80841292-80841311 | MS.gene75134:intron | 35.0% | |
| GTGGTCACTAATAATTTGGT+TGG | - | chr1.1:80841385-80841404 | MS.gene75134:intron | 35.0% | |
| GTTCAGAATACAAAACACGT+GGG | + | chr1.1:80841671-80841690 | None:intergenic | 35.0% | |
| GTTGTTTAAATGTGAGCTTG+GGG | - | chr1.1:80841743-80841762 | MS.gene75134:CDS | 35.0% | |
| TAATACAGAAGTAACATGCC+AGG | + | chr1.1:80840582-80840601 | None:intergenic | 35.0% | |
| TACCTGGAAGAATATCATGT+GGG | - | chr1.1:80840360-80840379 | MS.gene75134:intron | 35.0% | |
| TATCTCGGAAGGAATATAAG+CGG | + | chr1.1:80840892-80840911 | None:intergenic | 35.0% | |
| TATGTAAAATGTTGGGGTCA+AGG | + | chr1.1:80839667-80839686 | None:intergenic | 35.0% | |
| TCATTCCATACGATATCATG+TGG | + | chr1.1:80840982-80841001 | None:intergenic | 35.0% | |
| TCCCTGTGATTTCTTCTAAA+CGG | + | chr1.1:80839616-80839635 | None:intergenic | 35.0% | |
| TCCGTTTAGAAGAAATCACA+GGG | - | chr1.1:80839612-80839631 | MS.gene75134:intron | 35.0% | |
| TCCTTATGTTACTGTAGGAA+TGG | - | chr1.1:80841037-80841056 | MS.gene75134:intron | 35.0% | |
| TTATTCTCTCCTGTAAGGAA+TGG | - | chr1.1:80841191-80841210 | MS.gene75134:intron | 35.0% | |
| TTCCGTTTAGAAGAAATCAC+AGG | - | chr1.1:80839611-80839630 | MS.gene75134:intron | 35.0% | |
| TTGTTTCGGGAAATGAGAAA+TGG | + | chr1.1:80840698-80840717 | None:intergenic | 35.0% | |
| TTTCATATGTTGGTATGGAG+TGG | + | chr1.1:80839207-80839226 | None:intergenic | 35.0% | |
| ! | AATTTTGCCACAAACTTTGC+AGG | + | chr1.1:80841693-80841712 | None:intergenic | 35.0% |
| ! | ACGTGTTTTATGTTGCCTTT+AGG | - | chr1.1:80839323-80839342 | MS.gene75134:intron | 35.0% |
| ! | CGTTTTCTTATGCTTCCTAA+AGG | + | chr1.1:80839341-80839360 | None:intergenic | 35.0% |
| ! | CTGTTGTTTAAATGTGAGCT+TGG | - | chr1.1:80841741-80841760 | MS.gene75134:CDS | 35.0% |
| ! | TGATCGTATTCTTTTCAACG+AGG | - | chr1.1:80839917-80839936 | MS.gene75134:intron | 35.0% |
| ! | TTAAAACTAGAGAGGTGTAC+AGG | + | chr1.1:80839522-80839541 | None:intergenic | 35.0% |
| ! | TTCTATTTCTCGTTCTATGC+AGG | - | chr1.1:80841243-80841262 | MS.gene75134:intron | 35.0% |
| ! | TTCTGAAAAAAATGGTCGCT+GGG | - | chr1.1:80839747-80839766 | MS.gene75134:intron | 35.0% |
| ! | TTCTGTTTGACTTTCTCTCA+TGG | - | chr1.1:80839258-80839277 | MS.gene75134:intron | 35.0% |
| ! | TTTCTGAAAAAAATGGTCGC+TGG | - | chr1.1:80839746-80839765 | MS.gene75134:intron | 35.0% |
| !! | ATTTTGTGCACATACTGGTT+TGG | - | chr1.1:80840656-80840675 | MS.gene75134:intron | 35.0% |
| !!! | TTTTTTCTCTCTCATGACAC+TGG | - | chr1.1:80839562-80839581 | MS.gene75134:CDS | 35.0% |
| AAGTAGAATTCCTCCTTCCT+AGG | + | chr1.1:80841069-80841088 | None:intergenic | 40.0% | |
| ACAGCAGCCTTGAATAAATC+CGG | + | chr1.1:80839085-80839104 | None:intergenic | 40.0% | |
| ACCTGGAAGAATATCATGTG+GGG | - | chr1.1:80840361-80840380 | MS.gene75134:intron | 40.0% | |
| ACGAAAATCTTGAACCGGAA+AGG | - | chr1.1:80840204-80840223 | MS.gene75134:intron | 40.0% | |
| ACTCACATACTTATCTCGGA+AGG | + | chr1.1:80840903-80840922 | None:intergenic | 40.0% | |
| ATAGTTCAGTGCCAAGAATC+AGG | + | chr1.1:80841326-80841345 | None:intergenic | 40.0% | |
| CAACTCCACATGATATCGTA+TGG | - | chr1.1:80840974-80840993 | MS.gene75134:intron | 40.0% | |
| CCACATATTCTTGTTACAGC+TGG | - | chr1.1:80841283-80841302 | MS.gene75134:intron | 40.0% | |
| CCAGCTGTAACAAGAATATG+TGG | + | chr1.1:80841286-80841305 | None:intergenic | 40.0% | |
| CCCATTCCTACAGTAACATA+AGG | + | chr1.1:80841041-80841060 | None:intergenic | 40.0% | |
| GAAGTAGTGAGAGGAATAGT+TGG | + | chr1.1:80839151-80839170 | None:intergenic | 40.0% | |
| GGGGTCAAGGTATAATAGTA+GGG | + | chr1.1:80839654-80839673 | None:intergenic | 40.0% | |
| GGGTCAAGGTATAATAGTAG+GGG | + | chr1.1:80839653-80839672 | None:intergenic | 40.0% | |
| GGTTCAGAATACAAAACACG+TGG | + | chr1.1:80841672-80841691 | None:intergenic | 40.0% | |
| TCCTAGTAACCATTCCTTAC+AGG | + | chr1.1:80841203-80841222 | None:intergenic | 40.0% | |
| TCCTGTAAGGAATGGTTACT+AGG | - | chr1.1:80841199-80841218 | MS.gene75134:intron | 40.0% | |
| TGGGGTCAAGGTATAATAGT+AGG | + | chr1.1:80839655-80839674 | None:intergenic | 40.0% | |
| TGGTAAGCATACCTGATTCT+TGG | - | chr1.1:80841312-80841331 | MS.gene75134:intron | 40.0% | |
| TTCTGAACCTGCAAAGTTTG+TGG | - | chr1.1:80841683-80841702 | MS.gene75134:intron | 40.0% | |
| TTCTTCTTCAACGAGAGAAG+TGG | + | chr1.1:80839969-80839988 | None:intergenic | 40.0% | |
| ! | AGCTTACTGTTTGTTAGGAG+TGG | + | chr1.1:80839785-80839804 | None:intergenic | 40.0% |
| ! | AGGTATAATAGTAGGGGTGT+AGG | + | chr1.1:80839647-80839666 | None:intergenic | 40.0% |
| ! | GCTTACTGTTTGTTAGGAGT+GGG | + | chr1.1:80839784-80839803 | None:intergenic | 40.0% |
| ! | GGTATAATAGTAGGGGTGTA+GGG | + | chr1.1:80839646-80839665 | None:intergenic | 40.0% |
| !! | ACATACTGGTTTGGATGTGT+GGG | - | chr1.1:80840665-80840684 | MS.gene75134:intron | 40.0% |
| !! | CTGTTAGGGGAGTATTCATT+CGG | + | chr1.1:80839411-80839430 | None:intergenic | 40.0% |
| !!! | GACTTTTTTCGAAGTCAGGA+AGG | - | chr1.1:80841769-80841788 | MS.gene75134:CDS | 40.0% |
| AAATAGGCGGTGAAGGTTAG+AGG | + | chr1.1:80841149-80841168 | None:intergenic | 45.0% | |
| AAGTACATGTGTCGGGGTAT+AGG | - | chr1.1:80840496-80840515 | MS.gene75134:intron | 45.0% | |
| AGTACATGTGTCGGGGTATA+GGG | - | chr1.1:80840497-80840516 | MS.gene75134:intron | 45.0% | |
| CAGAAAATGTGGGGGTGAAA+GGG | + | chr1.1:80839732-80839751 | None:intergenic | 45.0% | |
| CCTGGAAGAATATCATGTGG+GGG | - | chr1.1:80840362-80840381 | MS.gene75134:intron | 45.0% | |
| GATGTCACTGTGAGATGCAT+TGG | - | chr1.1:80839375-80839394 | MS.gene75134:intron | 45.0% | |
| GTTGTCACAACATCCACCAA+AGG | + | chr1.1:80839118-80839137 | None:intergenic | 45.0% | |
| TCAGAAAATGTGGGGGTGAA+AGG | + | chr1.1:80839733-80839752 | None:intergenic | 45.0% | |
| TTCTCGTTCTATGCAGGTCA+AGG | - | chr1.1:80841249-80841268 | MS.gene75134:intron | 45.0% | |
| TTTAAATGTGAGCTTGGGGC+TGG | - | chr1.1:80841747-80841766 | MS.gene75134:CDS | 45.0% | |
| ! | AGGGGTGAAAGTACATGTGT+CGG | - | chr1.1:80840488-80840507 | MS.gene75134:intron | 45.0% |
| !! | AACATCCACCAAAGGTACTC+TGG | + | chr1.1:80839110-80839129 | None:intergenic | 45.0% |
| !! | CACATACTGGTTTGGATGTG+TGG | - | chr1.1:80840664-80840683 | MS.gene75134:intron | 45.0% |
| !! | GAGGCACTGCACTTAACATA+TGG | - | chr1.1:80840866-80840885 | MS.gene75134:intron | 45.0% |
| !!! | GCTGGACTTTTTTCGAAGTC+AGG | - | chr1.1:80841765-80841784 | MS.gene75134:CDS | 45.0% |
| CCAAATCACAGCTACATCCC+TGG | - | chr1.1:80840528-80840547 | MS.gene75134:intron | 50.0% | |
| CCAGGGATGTAGCTGTGATT+TGG | + | chr1.1:80840531-80840550 | None:intergenic | 50.0% | |
| CCCCCACATGATATTCTTCC+AGG | + | chr1.1:80840365-80840384 | None:intergenic | 50.0% | |
| TCCTCTCACTACTTCCGACT+GGG | - | chr1.1:80839156-80839175 | MS.gene75134:CDS | 50.0% | |
| TGTAGGAATGGGGTGATCCT+AGG | - | chr1.1:80841049-80841068 | MS.gene75134:intron | 50.0% | |
| TTCCTCTCACTACTTCCGAC+TGG | - | chr1.1:80839155-80839174 | MS.gene75134:CDS | 50.0% | |
| ! | GGGGTGAAAGTACATGTGTC+GGG | - | chr1.1:80840489-80840508 | MS.gene75134:intron | 50.0% |
| ! | GGGTGAAAGTACATGTGTCG+GGG | - | chr1.1:80840490-80840509 | MS.gene75134:intron | 50.0% |
| ! | TGCTGTTGCCAGAGTACCTT+TGG | - | chr1.1:80839099-80839118 | MS.gene75134:CDS | 50.0% |
| ! | TGTTGCCAGAGTACCTTTGG+TGG | - | chr1.1:80839102-80839121 | MS.gene75134:CDS | 50.0% |
| ATGGGGTGATCCTAGGAAGG+AGG | - | chr1.1:80841056-80841075 | MS.gene75134:intron | 55.0% | |
| GGAATGGGGTGATCCTAGGA+AGG | - | chr1.1:80841053-80841072 | MS.gene75134:intron | 55.0% | |
| TCCCAGTCGGAAGTAGTGAG+AGG | + | chr1.1:80839160-80839179 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80839076 | 80841794 | 80839076 | ID=MS.gene75134 |
| chr1.1 | mRNA | 80839076 | 80841794 | 80839076 | ID=MS.gene75134.t1;Parent=MS.gene75134 |
| chr1.1 | exon | 80841690 | 80841794 | 80841690 | ID=MS.gene75134.t1.exon1;Parent=MS.gene75134.t1 |
| chr1.1 | CDS | 80841690 | 80841794 | 80841690 | ID=cds.MS.gene75134.t1;Parent=MS.gene75134.t1 |
| chr1.1 | exon | 80839751 | 80839816 | 80839751 | ID=MS.gene75134.t1.exon2;Parent=MS.gene75134.t1 |
| chr1.1 | CDS | 80839751 | 80839816 | 80839751 | ID=cds.MS.gene75134.t1;Parent=MS.gene75134.t1 |
| chr1.1 | exon | 80839557 | 80839605 | 80839557 | ID=MS.gene75134.t1.exon3;Parent=MS.gene75134.t1 |
| chr1.1 | CDS | 80839557 | 80839605 | 80839557 | ID=cds.MS.gene75134.t1;Parent=MS.gene75134.t1 |
| chr1.1 | exon | 80839076 | 80839203 | 80839076 | ID=MS.gene75134.t1.exon4;Parent=MS.gene75134.t1 |
| chr1.1 | CDS | 80839076 | 80839203 | 80839076 | ID=cds.MS.gene75134.t1;Parent=MS.gene75134.t1 |
| Gene Sequence |
| Protein sequence |
