AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75260.t1 MTR_2g047838 98.125 160 3 0 1 160 1 160 9.47e-114 321
MS.gene75260.t1 MTR_8g089310 69.880 166 41 2 1 160 14 176 4.61e-78 231
MS.gene75260.t1 MTR_8g089310 69.880 166 41 2 1 160 1 163 7.11e-78 230
MS.gene75260.t1 MTR_8g089310 69.880 166 41 2 1 160 48 210 1.43e-77 231
MS.gene75260.t1 MTR_4g098500 59.649 114 43 2 2 115 5 115 3.31e-46 148
MS.gene75260.t1 MTR_4g098500 58.772 114 44 1 2 115 31 141 1.71e-45 147
MS.gene75260.t1 MTR_4g088850 43.182 88 50 0 44 131 40 127 4.07e-24 92.4
MS.gene75260.t1 MTR_4g088850 44.737 76 42 0 44 119 40 115 1.43e-21 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 6 176 2.23e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 6 176 2.23e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 1 171 3.33e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 1 171 3.33e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 1 171 3.33e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 1 171 3.33e-54 171
MS.gene75260.t1 AT4G20380 58.721 172 58 4 1 160 1 171 3.33e-54 171
MS.gene75260.t1 AT4G20380 51.010 198 58 4 1 160 1 197 6.98e-51 163
MS.gene75260.t1 AT1G32540 59.292 113 43 2 2 114 65 174 6.75e-45 147
MS.gene75260.t1 AT1G32540 57.895 114 45 1 2 115 32 142 2.38e-44 144
MS.gene75260.t1 AT1G32540 57.895 114 45 1 2 115 32 142 2.38e-44 144
MS.gene75260.t1 AT1G32540 58.559 111 43 1 2 112 32 139 1.24e-43 143
MS.gene75260.t1 AT4G20380 57.600 125 43 3 1 116 1 124 3.79e-41 135
MS.gene75260.t1 AT1G32540 59.740 77 28 2 2 78 65 138 5.65e-27 100
MS.gene75260.t1 AT1G32540 50.000 68 33 1 45 111 66 133 3.15e-14 67.0
MS.gene75260.t1 AT1G32540 58.442 77 29 1 2 78 32 105 1.59e-26 98.2
MS.gene75260.t1 AT1G32540 50.000 68 33 1 45 111 33 100 2.03e-14 66.6
MS.gene75260.t1 AT1G32540 58.442 77 29 1 2 78 32 105 1.59e-26 98.2
MS.gene75260.t1 AT1G32540 50.000 68 33 1 45 111 33 100 2.03e-14 66.6
MS.gene75260.t1 AT4G21610 47.500 80 42 0 43 122 57 136 2.26e-24 94.0
MS.gene75260.t1 AT4G21610 33.750 80 49 1 2 81 58 133 7.68e-11 58.2
MS.gene75260.t1 AT4G21610 45.946 74 40 0 43 116 57 130 9.71e-21 84.3

Find 51 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGATTCAAGTGGGAAAT+TGG 0.251370 2.1:-43725418 MS.gene75260:intron
TCGGAGCTGGTTGTTTCATT+AGG 0.307392 2.1:+43725616 None:intergenic
TTCCTAGACACAAGTTCTAT+TGG 0.335185 2.1:-43724386 MS.gene75260:CDS
GGAGGAAGAACAGGAATAAC+AGG 0.354231 2.1:+43729740 None:intergenic
TGCGTCTAGTGGCCATATTC+CGG 0.359962 2.1:+43724335 None:intergenic
GGCAGTTCCCACAACGGATA+TGG 0.376956 2.1:+43726398 None:intergenic
GTTATTCCTGTTCTTCCTCC+TGG 0.387766 2.1:-43729737 MS.gene75260:intron
CGGAGCCACATTATGTGTAC+TGG 0.429482 2.1:-43729833 MS.gene75260:CDS
AAGATACCAGGAGGAAGAAC+AGG 0.433787 2.1:+43729731 None:intergenic
AGAAGATACCGTTTCGGAGC+TGG 0.444161 2.1:+43725603 None:intergenic
CAAACATTGCTTGCTCCTCT+AGG 0.449369 2.1:+43729788 None:intergenic
CCACTTGAATCAACGGACAT+AGG 0.456065 2.1:+43725426 None:intergenic
AGGAGTTGGCGGCCTTCCAT+TGG 0.478744 2.1:+43725648 None:intergenic
ATATCCGTTGTGGGAACTGC+CGG 0.504182 2.1:-43726396 MS.gene75260:CDS
TGCAGTAGAAGATACCGTTT+CGG 0.505298 2.1:+43725597 None:intergenic
AAATGAACCATATCCGTTGT+GGG 0.521367 2.1:-43726405 MS.gene75260:CDS
GTTTCATTAGGTGTCAGTAC+AGG 0.522934 2.1:+43725628 None:intergenic
CAATTTCCCACTTGAATCAA+CGG 0.526156 2.1:+43725419 None:intergenic
TTGCTCCTCTAGGGTAAAGC+AGG 0.536954 2.1:+43729798 None:intergenic
GAGGATACATGAGTGTTGTC+CGG 0.538194 2.1:+43726377 None:intergenic
AAACATTGCTTGCTCCTCTA+GGG 0.540478 2.1:+43729789 None:intergenic
GAAATGTCACAACTTTATTG+TGG 0.542581 2.1:-43728674 MS.gene75260:CDS
CAAATGAACCATATCCGTTG+TGG 0.547355 2.1:-43726406 MS.gene75260:CDS
TGAAACAACCAGCTCCGAAA+CGG 0.550490 2.1:-43725611 MS.gene75260:intron
AAGATTTATAGTGTTACAGC+AGG 0.559794 2.1:+43728598 None:intergenic
AACACTATAAATCTTGTGCC+AGG 0.563885 2.1:-43728590 MS.gene75260:intron
TTAGGTGTCAGTACAGGAGT+TGG 0.564205 2.1:+43725634 None:intergenic
GGTGTCAGTACAGGAGTTGG+CGG 0.576256 2.1:+43725637 None:intergenic
CTCCAATAGAACTTGTGTCT+AGG 0.578093 2.1:+43724384 None:intergenic
ACAACACTCATGTATCCTCA+TGG 0.578970 2.1:-43726373 MS.gene75260:CDS
CTATTGGAGCAAGAATTGCT+AGG 0.582605 2.1:-43724370 MS.gene75260:CDS
ATGTCACAACTTTATTGTGG+AGG 0.583864 2.1:-43728671 MS.gene75260:CDS
GTCTAGGAAGGTGGTTGACG+CGG 0.585120 2.1:+43724400 None:intergenic
AATAGAACTTGTGTCTAGGA+AGG 0.592039 2.1:+43724388 None:intergenic
ACATTATGTGTACTGGGTGT+AGG 0.596546 2.1:-43729826 MS.gene75260:CDS
TCCTGTAGATGACCAATGGA+AGG 0.615310 2.1:-43725660 MS.gene75260:intron
CCTATGTCCGTTGATTCAAG+TGG 0.615696 2.1:-43725426 MS.gene75260:CDS
AGAACTTGTGTCTAGGAAGG+TGG 0.629321 2.1:+43724391 None:intergenic
AACATCCTGCTTTACCCTAG+AGG 0.636037 2.1:-43729803 MS.gene75260:CDS
CTATGTCCGTTGATTCAAGT+GGG 0.636368 2.1:-43725425 MS.gene75260:CDS
CAAACTGCACATTTGACTGA+AGG 0.636685 2.1:+43726346 None:intergenic
TACACCCAGTACACATAATG+TGG 0.639256 2.1:+43729828 None:intergenic
ATTGTCCTGTAGATGACCAA+TGG 0.647818 2.1:-43725664 MS.gene75260:intron
ACAGTTTGGCTCTCAAAGTG+AGG 0.651282 2.1:+43725462 None:intergenic
GGAGCCACATTATGTGTACT+GGG 0.663903 2.1:-43729832 MS.gene75260:CDS
GAGGAAGAACAGGAATAACA+GGG 0.675525 2.1:+43729741 None:intergenic
ACATTGCTAATGCACGCACG+TGG 0.683036 2.1:-43728641 MS.gene75260:CDS
TTGTCCGGCAGTTCCCACAA+CGG 0.690082 2.1:+43726392 None:intergenic
GTTACAGCAGGAACATCTCA+CGG 0.690666 2.1:+43728610 None:intergenic
TTGACTGAAGGAGCTCCATG+AGG 0.723404 2.1:+43726358 None:intergenic
AGGAAGAACAGGAATAACAG+GGG 0.773701 2.1:+43729742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAACAATTAAATT+TGG - chr2.1:43724743-43724762 MS.gene75260:intron 10.0%
!! TAAAAACAACAATTAAATTT+GGG - chr2.1:43724744-43724763 MS.gene75260:intron 10.0%
!! TGTTAAAAAAAAAAAATCAA+AGG + chr2.1:43724582-43724601 None:intergenic 10.0%
!! TTATTTATACATTAAAAGAA+TGG - chr2.1:43724713-43724732 MS.gene75260:intron 10.0%
!!! AAAACTATAAAATATTTTAC+AGG - chr2.1:43729127-43729146 MS.gene75260:intron 10.0%
!!! TTATTTTGGTAATTAAAAAA+AGG + chr2.1:43729722-43729741 None:intergenic 10.0%
!!! TTTTATTTTTTTGTTAGTTT+TGG - chr2.1:43728794-43728813 MS.gene75260:intron 10.0%
!! AAAAAAAAAAAATCAAAGGA+AGG + chr2.1:43724578-43724597 None:intergenic 15.0%
!! AAACAATTATAGATATTCAA+TGG - chr2.1:43729671-43729690 MS.gene75260:intron 15.0%
!! ATTATAATTATATATCACCA+AGG - chr2.1:43726211-43726230 MS.gene75260:intron 15.0%
!! GATTTAAACTATAAACTAAA+TGG - chr2.1:43725435-43725454 MS.gene75260:CDS 15.0%
!! TTCAAAATAATATCAAATTG+TGG + chr2.1:43726864-43726883 None:intergenic 15.0%
!!! AAAATATGAAATTACTGATT+TGG + chr2.1:43729098-43729117 None:intergenic 15.0%
!!! AATCAAAGTTTTTTTTTTTC+AGG + chr2.1:43728883-43728902 None:intergenic 15.0%
!!! ATCAAAGTTTTTTTTTTTCA+GGG + chr2.1:43728882-43728901 None:intergenic 15.0%
!!! ATTTAATTGTTGTTTTTATG+AGG + chr2.1:43724742-43724761 None:intergenic 15.0%
!!! CATTACTTCAAATATATTTT+AGG - chr2.1:43728330-43728349 MS.gene75260:intron 15.0%
!!! TTTAAAACTAATCTGAATTT+CGG + chr2.1:43727484-43727503 None:intergenic 15.0%
!!! TTTAATTGTTGTTTTTATGA+GGG + chr2.1:43724741-43724760 None:intergenic 15.0%
!! AAATCAATTTAAACCTTGAA+CGG + chr2.1:43729404-43729423 None:intergenic 20.0%
!! AATAATATTTCCCACTAAAT+TGG + chr2.1:43724698-43724717 None:intergenic 20.0%
!! AATTAAAAAAAGGACAAGAT+TGG + chr2.1:43729712-43729731 None:intergenic 20.0%
!! ATAATATTTCCCACTAAATT+GGG + chr2.1:43724697-43724716 None:intergenic 20.0%
!! ATAGTCATCTCATATTATAA+AGG + chr2.1:43728912-43728931 None:intergenic 20.0%
!! ATATTTAAGAAAAGAAAGAC+AGG - chr2.1:43728209-43728228 MS.gene75260:intron 20.0%
!! ATTTAGCCAATTATTAACAA+GGG - chr2.1:43725344-43725363 MS.gene75260:intron 20.0%
!! CAAAATTCACTTATTCTATA+GGG + chr2.1:43728850-43728869 None:intergenic 20.0%
!! CATTTGATTAGAATCTTTAA+AGG + chr2.1:43727756-43727775 None:intergenic 20.0%
!! GTATTTATATGCATTATACA+AGG - chr2.1:43729427-43729446 MS.gene75260:intron 20.0%
!! GTTGAAAATCAGAAAATAAT+TGG - chr2.1:43728105-43728124 MS.gene75260:intron 20.0%
!! TATAAAAGCTTGATATAGAT+GGG - chr2.1:43728247-43728266 MS.gene75260:intron 20.0%
!! TATAAATTAAGTGTATACCA+GGG + chr2.1:43725738-43725757 None:intergenic 20.0%
!! TATCAAAATAGAATCTTGAT+TGG + chr2.1:43727998-43728017 None:intergenic 20.0%
!! TATTTAGCCAATTATTAACA+AGG - chr2.1:43725343-43725362 MS.gene75260:intron 20.0%
!! TTAAAACTAATCTGAATTTC+GGG + chr2.1:43727483-43727502 None:intergenic 20.0%
!! TTAACTACAAAAATATTGCA+TGG + chr2.1:43726310-43726329 None:intergenic 20.0%
!! TTATAAATTAAGTGTATACC+AGG + chr2.1:43725739-43725758 None:intergenic 20.0%
!! TTGAAAACAAAAACAGTAAA+AGG + chr2.1:43724472-43724491 None:intergenic 20.0%
!! TTGATTAGGAAAAAAATCAT+AGG + chr2.1:43727380-43727399 None:intergenic 20.0%
!! TTGTAAATATATATCATACC+TGG + chr2.1:43725607-43725626 None:intergenic 20.0%
!!! AAACATATTAAGCTTTTAGA+AGG + chr2.1:43726094-43726113 None:intergenic 20.0%
!!! AAGCAAAGAATTTTTTTTTC+TGG - chr2.1:43727170-43727189 MS.gene75260:intron 20.0%
!!! ACAAAAATTATTGAGTTGAA+TGG + chr2.1:43726617-43726636 None:intergenic 20.0%
!!! AGCAAAGAATTTTTTTTTCT+GGG - chr2.1:43727171-43727190 MS.gene75260:intron 20.0%
!!! GTTTTTGTAGTTTATAGATA+AGG + chr2.1:43727424-43727443 None:intergenic 20.0%
!!! TAATATGAGATGACTATTTT+TGG - chr2.1:43728915-43728934 MS.gene75260:intron 20.0%
!!! TCAAAGTTTTTTTTTTTCAG+GGG + chr2.1:43728881-43728900 None:intergenic 20.0%
!!! TCAAATATATTTTAGGATTC+TGG - chr2.1:43728337-43728356 MS.gene75260:intron 20.0%
!!! TGTTGAGTTAATTTTTCTAT+TGG + chr2.1:43724878-43724897 None:intergenic 20.0%
!!! TTAATTGTTGTTTTTATGAG+GGG + chr2.1:43724740-43724759 None:intergenic 20.0%
!!! TTAATTTTAAGAATGTGAAC+TGG - chr2.1:43729254-43729273 MS.gene75260:intron 20.0%
!!! TTCTAAAAGCTTAATATGTT+TGG - chr2.1:43726093-43726112 MS.gene75260:intron 20.0%
! AAAATGCAAAATGTTGACAA+CGG + chr2.1:43728450-43728469 None:intergenic 25.0%
! AAAATTTACGTGTAAACTTC+AGG - chr2.1:43727600-43727619 MS.gene75260:intron 25.0%
! AAATACACTTAATTCATCGA+TGG - chr2.1:43725703-43725722 MS.gene75260:intron 25.0%
! AAATCATATACCCAATTTAG+TGG - chr2.1:43724684-43724703 MS.gene75260:intron 25.0%
! AATATCTTCTGATTATTCCA+AGG - chr2.1:43726174-43726193 MS.gene75260:intron 25.0%
! AATCATATACCCAATTTAGT+GGG - chr2.1:43724685-43724704 MS.gene75260:intron 25.0%
! AATTAAAATTATGCTGTCCT+TGG + chr2.1:43726194-43726213 None:intergenic 25.0%
! ACAAAAACAAGATAGAATCT+TGG - chr2.1:43727436-43727455 MS.gene75260:intron 25.0%
! ATATCCATAGATGAAGAAAA+TGG + chr2.1:43727661-43727680 None:intergenic 25.0%
! CCAAAATTCACTTATTCTAT+AGG + chr2.1:43728851-43728870 None:intergenic 25.0%
! CTAAATTGGGTATATGATTT+CGG + chr2.1:43724684-43724703 None:intergenic 25.0%
! CTATAAAAGCTTGATATAGA+TGG - chr2.1:43728246-43728265 MS.gene75260:intron 25.0%
! GAATGATATTATGATAGTAC+TGG - chr2.1:43726947-43726966 MS.gene75260:intron 25.0%
! GACTAATAACGATCAATATA+GGG + chr2.1:43725310-43725329 None:intergenic 25.0%
! GCTTATTCGTTAAAAAGAAA+TGG + chr2.1:43727306-43727325 None:intergenic 25.0%
! GTAAATTAATTCTGTTGATC+TGG - chr2.1:43727940-43727959 MS.gene75260:intron 25.0%
! TCAGAAGATATTACGTTAAA+TGG + chr2.1:43726166-43726185 None:intergenic 25.0%
! TTAAATTGAAAACTCCTTCT+TGG - chr2.1:43725147-43725166 MS.gene75260:intron 25.0%
!! CCTATAGAATAAGTGAATTT+TGG - chr2.1:43728848-43728867 MS.gene75260:intron 25.0%
!! GAACAAGTGAATTTTTAATC+TGG + chr2.1:43725412-43725431 None:intergenic 25.0%
!! TCAACATTTTGCATTTTATG+TGG - chr2.1:43728453-43728472 MS.gene75260:intron 25.0%
!! TCAACTCAATAATTTTTGTC+CGG - chr2.1:43726618-43726637 MS.gene75260:intron 25.0%
!!! CTATACTTTTGACTTTCTTT+TGG - chr2.1:43728605-43728624 MS.gene75260:CDS 25.0%
!!! GCAAAGAATTTTTTTTTCTG+GGG - chr2.1:43727172-43727191 MS.gene75260:intron 25.0%
!!! TAATTGTTGTTTTTATGAGG+GGG + chr2.1:43724739-43724758 None:intergenic 25.0%
!!! TGGTTTTGATGTTTATGTTT+TGG - chr2.1:43729577-43729596 MS.gene75260:intron 25.0%
AAAACTTACAACTTAATCGC+AGG + chr2.1:43724820-43724839 None:intergenic 30.0%
AAACTAAATGGTTACATCCA+GGG - chr2.1:43725447-43725466 MS.gene75260:CDS 30.0%
AAACTCCTTCTTGGAATAAT+CGG - chr2.1:43725156-43725175 MS.gene75260:intron 30.0%
AAACTTACAACTTAATCGCA+GGG + chr2.1:43724819-43724838 None:intergenic 30.0%
AAGATTTATAGTGTTACAGC+AGG + chr2.1:43725581-43725600 None:intergenic 30.0%
AATATTGTACTGTTTAGCGA+AGG - chr2.1:43725901-43725920 MS.gene75260:intron 30.0%
ACTGATTGGATTTGAAGAAT+AGG - chr2.1:43728040-43728059 MS.gene75260:intron 30.0%
AGATAGAATCTTGGTTCATT+TGG - chr2.1:43727445-43727464 MS.gene75260:intron 30.0%
AGGATATGGTAACTATACAA+TGG + chr2.1:43729171-43729190 None:intergenic 30.0%
ATGCATCCCTTGTTAATAAT+TGG + chr2.1:43725353-43725372 None:intergenic 30.0%
CATACACAATCAAATAGATG+AGG + chr2.1:43726928-43726947 None:intergenic 30.0%
GAAATGTCACAACTTTATTG+TGG - chr2.1:43725502-43725521 MS.gene75260:intron 30.0%
GAGTATGATGTACATATAGT+TGG + chr2.1:43725838-43725857 None:intergenic 30.0%
GCTAAACAGTACAATATTTG+TGG + chr2.1:43725899-43725918 None:intergenic 30.0%
GGACTAATAACGATCAATAT+AGG + chr2.1:43725311-43725330 None:intergenic 30.0%
GGCTAAATAGACTATAGATA+TGG + chr2.1:43725332-43725351 None:intergenic 30.0%
TAAACTAAATGGTTACATCC+AGG - chr2.1:43725446-43725465 MS.gene75260:CDS 30.0%
TATGACAAAAGTTACTCCTT+TGG + chr2.1:43725038-43725057 None:intergenic 30.0%
TCAAATTATCTTTCCCAACA+TGG - chr2.1:43726261-43726280 MS.gene75260:intron 30.0%
TCAACAAAGAGTTGTTAAGT+GGG + chr2.1:43725066-43725085 None:intergenic 30.0%
TCACTTTCATTCAGAAGAAT+GGG - chr2.1:43726006-43726025 MS.gene75260:intron 30.0%
TTAACTAAACACACTAAGCA+TGG + chr2.1:43724516-43724535 None:intergenic 30.0%
TTAGGAAAAAAATCATAGGC+TGG + chr2.1:43727376-43727395 None:intergenic 30.0%
TTCACTTTCATTCAGAAGAA+TGG - chr2.1:43726005-43726024 MS.gene75260:intron 30.0%
TTCGTTAAAAAGAAATGGAG+AGG + chr2.1:43727301-43727320 None:intergenic 30.0%
TTGGAATTGAAACAGATCAA+GGG + chr2.1:43727027-43727046 None:intergenic 30.0%
! AGTTCCATTTTCTTCATCTA+TGG - chr2.1:43727654-43727673 MS.gene75260:intron 30.0%
! CTTTTTAACGAATAAGCAGT+TGG - chr2.1:43727309-43727328 MS.gene75260:intron 30.0%
! GATTTTCTACTACTACAGTT+TGG + chr2.1:43728731-43728750 None:intergenic 30.0%
! GCAAAAAGGACGATTTATTT+TGG + chr2.1:43729736-43729755 None:intergenic 30.0%
! GCTAAAGATTTTAGACTGAT+TGG - chr2.1:43728026-43728045 MS.gene75260:intron 30.0%
! GGGAAGAAAGAATTCATTTT+AGG + chr2.1:43729057-43729076 None:intergenic 30.0%
! GTTGTAAGTTTTTGCAGTAA+TGG - chr2.1:43724828-43724847 MS.gene75260:intron 30.0%
! TCAAAATGAACCTATCGATT+TGG + chr2.1:43729529-43729548 None:intergenic 30.0%
!! GTTGTTTACTGACTTATTGT+TGG - chr2.1:43727725-43727744 MS.gene75260:intron 30.0%
!! TCAGATTACGTCATTTTGTT+CGG - chr2.1:43728128-43728147 MS.gene75260:intron 30.0%
!! TTTTCATTTTTGCCGGAATA+TGG - chr2.1:43729829-43729848 MS.gene75260:CDS 30.0%
!!! AATGCTACACTAGTTTTCAT+CGG + chr2.1:43724971-43724990 None:intergenic 30.0%
!!! ATGTTTATGTTTTGGTGACT+TGG - chr2.1:43729585-43729604 MS.gene75260:intron 30.0%
!!! GAATAAGTGAATTTTGGTTC+TGG - chr2.1:43728854-43728873 MS.gene75260:intron 30.0%
AAATGAACCATATCCGTTGT+GGG - chr2.1:43727771-43727790 MS.gene75260:intron 35.0%
AACAACTTAGCATGCATGAT+TGG + chr2.1:43727711-43727730 None:intergenic 35.0%
AACACTATAAATCTTGTGCC+AGG - chr2.1:43725586-43725605 MS.gene75260:intron 35.0%
AAGGATATTAAGGATGACAG+TGG + chr2.1:43726473-43726492 None:intergenic 35.0%
AATAGAACTTGTGTCTAGGA+AGG + chr2.1:43729791-43729810 None:intergenic 35.0%
ACACACGCTATATTGCAAAA+AGG + chr2.1:43729750-43729769 None:intergenic 35.0%
ACAGTAAAAGGAAAGATACC+AGG + chr2.1:43724460-43724479 None:intergenic 35.0%
ACCTTCAATACATAAACGCA+TGG + chr2.1:43725202-43725221 None:intergenic 35.0%
ACGGATATCAAGTAAATTGC+AGG + chr2.1:43728431-43728450 None:intergenic 35.0%
ACTCGGGGATACAAAAAATT+AGG + chr2.1:43726783-43726802 None:intergenic 35.0%
AGACTGTTTGATGCCATATA+AGG + chr2.1:43726806-43726825 None:intergenic 35.0%
AGATAAGGAATTACTGCAAG+TGG + chr2.1:43727409-43727428 None:intergenic 35.0%
AGGATATTAAGGATGACAGT+GGG + chr2.1:43726472-43726491 None:intergenic 35.0%
AGTTAAAGAATGTCACCTGT+CGG + chr2.1:43728947-43728966 None:intergenic 35.0%
ATATGTCATGTCATCTCGAA+TGG - chr2.1:43728988-43729007 MS.gene75260:intron 35.0%
ATCCACATAGCTCAATAATG+AGG - chr2.1:43727563-43727582 MS.gene75260:intron 35.0%
ATCTTTCCCAACATGGTATT+CGG - chr2.1:43726268-43726287 MS.gene75260:intron 35.0%
ATGTCACAACTTTATTGTGG+AGG - chr2.1:43725505-43725524 MS.gene75260:intron 35.0%
ATTAAGTGTATACCAGGGTT+TGG + chr2.1:43725733-43725752 None:intergenic 35.0%
ATTGCATACTTAGACTAAGC+AGG - chr2.1:43724540-43724559 MS.gene75260:intron 35.0%
CAACAAAGAGTTGTTAAGTG+GGG + chr2.1:43725065-43725084 None:intergenic 35.0%
CAATTTCCCACTTGAATCAA+CGG + chr2.1:43728760-43728779 None:intergenic 35.0%
CTTCTTGTCTGATCCAAATT+AGG - chr2.1:43725258-43725277 MS.gene75260:intron 35.0%
CTTGGAATTGAAACAGATCA+AGG + chr2.1:43727028-43727047 None:intergenic 35.0%
GAATTCTTTCTTCCCTCAAA+TGG - chr2.1:43729062-43729081 MS.gene75260:intron 35.0%
GACTTCAATTCAATCATTGC+AGG + chr2.1:43729370-43729389 None:intergenic 35.0%
GATCTTTAACTCTCGTATCA+TGG - chr2.1:43727107-43727126 MS.gene75260:intron 35.0%
GCATATCATCAACTTACCAA+AGG - chr2.1:43725019-43725038 MS.gene75260:intron 35.0%
GGAATAACAAACTGAACCTA+TGG + chr2.1:43726843-43726862 None:intergenic 35.0%
GGTAGAGTACAGAAATTAGT+TGG + chr2.1:43729016-43729035 None:intergenic 35.0%
GTACAATATTTGTGGAGAGT+AGG + chr2.1:43725891-43725910 None:intergenic 35.0%
GTCAACAAAGAGTTGTTAAG+TGG + chr2.1:43725067-43725086 None:intergenic 35.0%
TAAACATCAAAACCACATCC+AGG + chr2.1:43729572-43729591 None:intergenic 35.0%
TACTGGTATCAAGACAGTAA+AGG - chr2.1:43726964-43726983 MS.gene75260:intron 35.0%
TATCAGTAGTGATTAGACAC+AGG + chr2.1:43728971-43728990 None:intergenic 35.0%
TCAAACAGTCTCTTCAAGAA+TGG - chr2.1:43726815-43726834 MS.gene75260:intron 35.0%
TCCACATAGCTCAATAATGA+GGG - chr2.1:43727564-43727583 MS.gene75260:intron 35.0%
TCCATGCGTTTATGTATTGA+AGG - chr2.1:43725198-43725217 MS.gene75260:intron 35.0%
TCGATGTAAGTGTACATTGA+TGG - chr2.1:43727870-43727889 MS.gene75260:intron 35.0%
TGATCCAAATTAGGATCTAG+AGG - chr2.1:43725267-43725286 MS.gene75260:intron 35.0%
TGATGATTGTGGAGTTGTTA+AGG + chr2.1:43727076-43727095 None:intergenic 35.0%
TGCGTTTATGTATTGAAGGT+AGG - chr2.1:43725202-43725221 MS.gene75260:intron 35.0%
TGTCTAAGCAATGATGATTG+TGG + chr2.1:43727087-43727106 None:intergenic 35.0%
TTAGGATTCTGGTACTTGTA+TGG - chr2.1:43728348-43728367 MS.gene75260:intron 35.0%
TTATATATCACCAAGGTGTG+TGG - chr2.1:43726218-43726237 MS.gene75260:intron 35.0%
TTCCTAGACACAAGTTCTAT+TGG - chr2.1:43729790-43729809 MS.gene75260:CDS 35.0%
TTGCATACTTAGACTAAGCA+GGG - chr2.1:43724541-43724560 MS.gene75260:intron 35.0%
TTTGATGCCATATAAGGACT+CGG + chr2.1:43726800-43726819 None:intergenic 35.0%
! AAAAAGGGTTGACTTTCGAT+TGG - chr2.1:43726032-43726051 MS.gene75260:intron 35.0%
! AAACTTCCAAGGTATCAAAG+TGG + chr2.1:43726683-43726702 None:intergenic 35.0%
! ATCAGGAAATTTTAGATCCC+TGG + chr2.1:43725467-43725486 None:intergenic 35.0%
! CACCAAAAAGCATATGAAGA+TGG + chr2.1:43724997-43725016 None:intergenic 35.0%
! GCAAGTGGATGATATTGATT+AGG + chr2.1:43727394-43727413 None:intergenic 35.0%
! GGTTTTTGTACACACAATGA+TGG - chr2.1:43726711-43726730 MS.gene75260:intron 35.0%
! TACCTTGGAAGTTTCACTTT+TGG - chr2.1:43726689-43726708 MS.gene75260:intron 35.0%
! TCATATCTTTTACCCTTTCC+TGG - chr2.1:43728489-43728508 MS.gene75260:intron 35.0%
!! ACCTTGGAAGTTTCACTTTT+GGG - chr2.1:43726690-43726709 MS.gene75260:intron 35.0%
!! CAGATTACGTCATTTTGTTC+GGG - chr2.1:43728129-43728148 MS.gene75260:intron 35.0%
!! CTGATGCTTTAAAACGTTGT+TGG - chr2.1:43729327-43729346 MS.gene75260:intron 35.0%
!! TGCTAGGTTTTCATTTTTGC+CGG - chr2.1:43729822-43729841 MS.gene75260:CDS 35.0%
!! TGTTGGTTTATGTGATGTTG+AGG - chr2.1:43729344-43729363 MS.gene75260:intron 35.0%
!!! ATGCTACACTAGTTTTCATC+GGG + chr2.1:43724970-43724989 None:intergenic 35.0%
!!! ATTTTTGTCCGGCCTTATTT+AGG - chr2.1:43726629-43726648 MS.gene75260:intron 35.0%
AAACATTGCTTGCTCCTCTA+GGG + chr2.1:43724390-43724409 None:intergenic 40.0%
AAGACTCAACCAACACAGTA+TGG + chr2.1:43726756-43726775 None:intergenic 40.0%
AATCAAAGGAAGGATCAACG+CGG + chr2.1:43724568-43724587 None:intergenic 40.0%
ACAACACTCATGTATCCTCA+TGG - chr2.1:43727803-43727822 MS.gene75260:intron 40.0%
ACACAGTATGGGTGAAAACA+AGG + chr2.1:43726744-43726763 None:intergenic 40.0%
ACAGGTAAGCAATGTTGTTG+TGG - chr2.1:43729278-43729297 MS.gene75260:intron 40.0%
ACATTATGTGTACTGGGTGT+AGG - chr2.1:43724350-43724369 MS.gene75260:CDS 40.0%
ACCCAAAAGTGAAACTTCCA+AGG + chr2.1:43726694-43726713 None:intergenic 40.0%
ACTGAACCAGTAGAAAATGC+AGG + chr2.1:43729191-43729210 None:intergenic 40.0%
AGACTCAACCAACACAGTAT+GGG + chr2.1:43726755-43726774 None:intergenic 40.0%
AGGAAGAACAGGAATAACAG+GGG + chr2.1:43724437-43724456 None:intergenic 40.0%
ATAGCTGAAATACACCGCAA+GGG + chr2.1:43725785-43725804 None:intergenic 40.0%
ATGGATCCGAATACCATGTT+GGG + chr2.1:43726277-43726296 None:intergenic 40.0%
ATTGCATGGTCCATCAAGTA+TGG + chr2.1:43726296-43726315 None:intergenic 40.0%
ATTGTCCTGTAGATGACCAA+TGG - chr2.1:43728512-43728531 MS.gene75260:intron 40.0%
ATTGTGGAGTTGTTAAGGAG+CGG + chr2.1:43727071-43727090 None:intergenic 40.0%
CAAACTGCACATTTGACTGA+AGG + chr2.1:43727833-43727852 None:intergenic 40.0%
CAAATGAACCATATCCGTTG+TGG - chr2.1:43727770-43727789 MS.gene75260:intron 40.0%
CAAGTAAATTGCAGGCATAG+AGG + chr2.1:43728423-43728442 None:intergenic 40.0%
CAATGCAGAGGAAAGAGAAA+AGG + chr2.1:43726397-43726416 None:intergenic 40.0%
CACAGTATGGGTGAAAACAA+GGG + chr2.1:43726743-43726762 None:intergenic 40.0%
CAGAAGAATGGGAGCAAAAA+GGG - chr2.1:43726017-43726036 MS.gene75260:intron 40.0%
CAGGTAAGCAATGTTGTTGT+GGG - chr2.1:43729279-43729298 MS.gene75260:intron 40.0%
CCAAATTAGGATCTAGAGGT+TGG - chr2.1:43725271-43725290 MS.gene75260:intron 40.0%
CCAACCTCTAGATCCTAATT+TGG + chr2.1:43725274-43725293 None:intergenic 40.0%
CCAGTAGAAAATGCAGGATA+TGG + chr2.1:43729185-43729204 None:intergenic 40.0%
CGTGTAAACTTCAGGATGTT+TGG - chr2.1:43727608-43727627 MS.gene75260:intron 40.0%
CTATTGGAGCAAGAATTGCT+AGG - chr2.1:43729806-43729825 MS.gene75260:CDS 40.0%
CTCCAATAGAACTTGTGTCT+AGG + chr2.1:43729795-43729814 None:intergenic 40.0%
CTCTTCAAGAATGGTTCCAT+AGG - chr2.1:43726824-43726843 MS.gene75260:intron 40.0%
CTTCCCTCAAATGGATGTTT+GGG - chr2.1:43729071-43729090 MS.gene75260:intron 40.0%
GAAAAGAAAGACAGGATCGT+AGG - chr2.1:43728217-43728236 MS.gene75260:intron 40.0%
GAGGAAGAACAGGAATAACA+GGG + chr2.1:43724438-43724457 None:intergenic 40.0%
GCATCTACATCCAAATCGAT+AGG - chr2.1:43729516-43729535 MS.gene75260:intron 40.0%
GGATATTAAGGATGACAGTG+GGG + chr2.1:43726471-43726490 None:intergenic 40.0%
GGTTTCTATCTGGTTGTCAA+GGG - chr2.1:43726584-43726603 MS.gene75260:intron 40.0%
GTAAAAGGAAAGATACCAGG+AGG + chr2.1:43724457-43724476 None:intergenic 40.0%
GTATTCGGATCCATACTTGA+TGG - chr2.1:43726283-43726302 MS.gene75260:intron 40.0%
GTCCACATTTCAAACCCAAA+GGG + chr2.1:43725973-43725992 None:intergenic 40.0%
GTGTAAAAGCTGTACAGATC+TGG + chr2.1:43725640-43725659 None:intergenic 40.0%
GTGTGGTATAGTTGAGACAT+AGG - chr2.1:43726235-43726254 MS.gene75260:intron 40.0%
GTTTCATTAGGTGTCAGTAC+AGG + chr2.1:43728551-43728570 None:intergenic 40.0%
TACACCCAGTACACATAATG+TGG + chr2.1:43724351-43724370 None:intergenic 40.0%
TACACTGAGCACAGTAGATA+GGG + chr2.1:43726361-43726380 None:intergenic 40.0%
TATAGCTGAAATACACCGCA+AGG + chr2.1:43725786-43725805 None:intergenic 40.0%
TATGGATCCGAATACCATGT+TGG + chr2.1:43726278-43726297 None:intergenic 40.0%
TCAGAAGAATGGGAGCAAAA+AGG - chr2.1:43726016-43726035 MS.gene75260:intron 40.0%
TCTTCCCTCAAATGGATGTT+TGG - chr2.1:43729070-43729089 MS.gene75260:intron 40.0%
TGCAGTAGAAGATACCGTTT+CGG + chr2.1:43728582-43728601 None:intergenic 40.0%
TGGACACGCTAAGGATATTA+AGG + chr2.1:43726483-43726502 None:intergenic 40.0%
TGGATCCGATTATTCCAAGA+AGG + chr2.1:43725164-43725183 None:intergenic 40.0%
TGGTTTCTATCTGGTTGTCA+AGG - chr2.1:43726583-43726602 MS.gene75260:intron 40.0%
TTAAGAATGTGAACTGGCAC+AGG - chr2.1:43729260-43729279 MS.gene75260:intron 40.0%
TTGACAACCAGATAGAAACC+AGG + chr2.1:43726584-43726603 None:intergenic 40.0%
TTGATGCCATATAAGGACTC+GGG + chr2.1:43726799-43726818 None:intergenic 40.0%
TTGGATGTAGATGCGAAATG+AGG + chr2.1:43729510-43729529 None:intergenic 40.0%
TTGTCTCGAATTACAAGTCC+TGG - chr2.1:43729551-43729570 MS.gene75260:intron 40.0%
TTGTTCGGGCTTCAATTTGT+TGG - chr2.1:43728143-43728162 MS.gene75260:intron 40.0%
! AACCACCCAACTATTGGTTA+TGG - chr2.1:43727274-43727293 MS.gene75260:intron 40.0%
! AACCCTTTGGGTTTGAAATG+TGG - chr2.1:43725968-43725987 MS.gene75260:intron 40.0%
! ACCACCCAACTATTGGTTAT+GGG - chr2.1:43727275-43727294 MS.gene75260:intron 40.0%
! AGTTTTTGATACCATGCCCA+CGG - chr2.1:43726063-43726082 MS.gene75260:intron 40.0%
! ATTTGTCTGAGATGTGTCCA+TGG - chr2.1:43727130-43727149 MS.gene75260:intron 40.0%
! CAAGGTATCAAAGTGGCTTT+GGG + chr2.1:43726676-43726695 None:intergenic 40.0%
! CCATATCCTGCATTTTCTAC+TGG - chr2.1:43729182-43729201 MS.gene75260:intron 40.0%
! CGCCATCTTCATATGCTTTT+TGG - chr2.1:43724992-43725011 MS.gene75260:intron 40.0%
! TGTTCGGGCTTCAATTTGTT+GGG - chr2.1:43728144-43728163 MS.gene75260:intron 40.0%
! TGTTTTCACCCATACTGTGT+TGG - chr2.1:43726744-43726763 MS.gene75260:intron 40.0%
!! CGTTGATTCAAGTGGGAAAT+TGG - chr2.1:43728758-43728777 MS.gene75260:intron 40.0%
!! CTATGTCCGTTGATTCAAGT+GGG - chr2.1:43728751-43728770 MS.gene75260:intron 40.0%
!! GATCTAGAGGTTGGTAAAGA+TGG - chr2.1:43725280-43725299 MS.gene75260:intron 40.0%
!!! ACTAGTTTTCATCGGGAATG+AGG + chr2.1:43724963-43724982 None:intergenic 40.0%
!!! TATTTTTGGTCTCTACCGAC+AGG - chr2.1:43728929-43728948 MS.gene75260:intron 40.0%
AAAACGTGAGTTTCGAACCC+AGG - chr2.1:43724618-43724637 MS.gene75260:intron 45.0%
AAAGAGAAAAGGCTACACCG+AGG + chr2.1:43726386-43726405 None:intergenic 45.0%
AAAGTGAGGTCTTGACTGCA+GGG + chr2.1:43728703-43728722 None:intergenic 45.0%
AAATTTCCTGATGTGCCTGC+AGG - chr2.1:43725475-43725494 MS.gene75260:intron 45.0%
AACAGAAACCTTGCAGGATG+TGG + chr2.1:43726546-43726565 None:intergenic 45.0%
AACATCCTGCTTTACCCTAG+AGG - chr2.1:43724373-43724392 MS.gene75260:CDS 45.0%
AAGATACCAGGAGGAAGAAC+AGG + chr2.1:43724448-43724467 None:intergenic 45.0%
AAGGACACACACAATCTCAG+GGG - chr2.1:43727230-43727249 MS.gene75260:intron 45.0%
AAGGTTTCTGTTCCCTTGCT+TGG - chr2.1:43726554-43726573 MS.gene75260:intron 45.0%
ACAAGGACACACACAATCTC+AGG - chr2.1:43727228-43727247 MS.gene75260:intron 45.0%
AGAACTTGTGTCTAGGAAGG+TGG + chr2.1:43729788-43729807 None:intergenic 45.0%
AGAGGCCCATAACCAATAGT+TGG + chr2.1:43727283-43727302 None:intergenic 45.0%
AGGAGAATCCGTGCAAGTTA+CGG + chr2.1:43729037-43729056 None:intergenic 45.0%
ATCAAAGGAAGGATCAACGC+GGG + chr2.1:43724567-43724586 None:intergenic 45.0%
ATCAAATAGATGAGGCCCCA+AGG + chr2.1:43726920-43726939 None:intergenic 45.0%
ATCGATGGTATACCAAACCC+TGG - chr2.1:43725718-43725737 MS.gene75260:intron 45.0%
ATTAAGGATGACAGTGGGGT+AGG + chr2.1:43726467-43726486 None:intergenic 45.0%
ATTTGTGGAGAGTAGGTCAC+TGG + chr2.1:43725884-43725903 None:intergenic 45.0%
CAAACATTGCTTGCTCCTCT+AGG + chr2.1:43724391-43724410 None:intergenic 45.0%
CAAGGACACACACAATCTCA+GGG - chr2.1:43727229-43727248 MS.gene75260:intron 45.0%
CAAGGGGAAAGAAGAAAGGA+AGG + chr2.1:43725768-43725787 None:intergenic 45.0%
CAGACTTCTCGAAAGTAGCT+TGG + chr2.1:43727046-43727065 None:intergenic 45.0%
CCACTTGAATCAACGGACAT+AGG + chr2.1:43728753-43728772 None:intergenic 45.0%
CCCTTGTGCAAAAACCCTTT+GGG - chr2.1:43725956-43725975 MS.gene75260:intron 45.0%
CGAATTACAAGTCCTGGATG+TGG - chr2.1:43729557-43729576 MS.gene75260:intron 45.0%
CGTCCACATTTCAAACCCAA+AGG + chr2.1:43725974-43725993 None:intergenic 45.0%
CTACAGGACAATCCAGGAAA+GGG + chr2.1:43728504-43728523 None:intergenic 45.0%
CTCAACTATACCACACACCT+TGG + chr2.1:43726231-43726250 None:intergenic 45.0%
GAGGCCCATAACCAATAGTT+GGG + chr2.1:43727282-43727301 None:intergenic 45.0%
GCCCTCATTATTGAGCTATG+TGG + chr2.1:43727568-43727587 None:intergenic 45.0%
GCTAACAACCACCCAACTAT+TGG - chr2.1:43727268-43727287 MS.gene75260:intron 45.0%
GGAAAAACCAACAGCCAAAG+TGG + chr2.1:43724857-43724876 None:intergenic 45.0%
GGAGCCACATTATGTGTACT+GGG - chr2.1:43724344-43724363 MS.gene75260:CDS 45.0%
GGAGGAAGAACAGGAATAAC+AGG + chr2.1:43724439-43724458 None:intergenic 45.0%
GGTCCCAAACATCCATTTGA+GGG + chr2.1:43729077-43729096 None:intergenic 45.0%
GTACACTGAGCACAGTAGAT+AGG + chr2.1:43726362-43726381 None:intergenic 45.0%
GTGTAGCACTTAGCAGTAGA+AGG + chr2.1:43726896-43726915 None:intergenic 45.0%
GTTACAGCAGGAACATCTCA+CGG + chr2.1:43725569-43725588 None:intergenic 45.0%
GTTATTCCTGTTCTTCCTCC+TGG - chr2.1:43724439-43724458 MS.gene75260:intron 45.0%
TAGCTGAAATACACCGCAAG+GGG + chr2.1:43725784-43725803 None:intergenic 45.0%
TCCTGTAGATGACCAATGGA+AGG - chr2.1:43728516-43728535 MS.gene75260:intron 45.0%
TCCTTTCTTCTTTCCCCTTG+CGG - chr2.1:43725768-43725787 MS.gene75260:intron 45.0%
TCGTACAAGTGTCAGACACA+AGG - chr2.1:43727211-43727230 MS.gene75260:intron 45.0%
TCTACAGGACAATCCAGGAA+AGG + chr2.1:43728505-43728524 None:intergenic 45.0%
TCTAGACTCTTCTCCGTTCA+AGG - chr2.1:43729388-43729407 MS.gene75260:intron 45.0%
TCTCTTTCCTCTGCATTGCT+TGG - chr2.1:43726399-43726418 MS.gene75260:CDS 45.0%
TGAAACAACCAGCTCCGAAA+CGG - chr2.1:43728565-43728584 MS.gene75260:intron 45.0%
TGATGCCATATAAGGACTCG+GGG + chr2.1:43726798-43726817 None:intergenic 45.0%
TGGTCCCAAACATCCATTTG+AGG + chr2.1:43729078-43729097 None:intergenic 45.0%
TGTATCCCCGAGTCCTTATA+TGG - chr2.1:43726790-43726809 MS.gene75260:intron 45.0%
TGTGACATTTCCATTCCTGC+AGG + chr2.1:43725493-43725512 None:intergenic 45.0%
TTACAACTTAATCGCAGGGC+CGG + chr2.1:43724815-43724834 None:intergenic 45.0%
TTAGGTGTCAGTACAGGAGT+TGG + chr2.1:43728545-43728564 None:intergenic 45.0%
TTGTGGAGTTGTTAAGGAGC+GGG + chr2.1:43727070-43727089 None:intergenic 45.0%
TTTCCTCTGCATTGCTTGGT+GGG - chr2.1:43726403-43726422 MS.gene75260:CDS 45.0%
! ACCCAAAGGGTTTTTGCACA+AGG + chr2.1:43725960-43725979 None:intergenic 45.0%
! AGGGTTGACTTTCGATTGGT+TGG - chr2.1:43726036-43726055 MS.gene75260:intron 45.0%
! CAAGCTACTTTCGAGAAGTC+TGG - chr2.1:43727044-43727063 MS.gene75260:intron 45.0%
! CCAAAGCCACTTTGATACCT+TGG - chr2.1:43726674-43726693 MS.gene75260:intron 45.0%
! CCAAAGGGTTTTTGCACAAG+GGG + chr2.1:43725958-43725977 None:intergenic 45.0%
! CCAAGGTATCAAAGTGGCTT+TGG + chr2.1:43726677-43726696 None:intergenic 45.0%
! CCCAAAGGGTTTTTGCACAA+GGG + chr2.1:43725959-43725978 None:intergenic 45.0%
! GACTTGGTAAGCATGATCAG+TGG - chr2.1:43729601-43729620 MS.gene75260:intron 45.0%
! GAGGATACATGAGTGTTGTC+CGG + chr2.1:43727802-43727821 None:intergenic 45.0%
! GTACTCTACCGTAACTTGCA+CGG - chr2.1:43729026-43729045 MS.gene75260:intron 45.0%
! GTTTGAAATGTGGACGTGGT+GGG - chr2.1:43725978-43725997 MS.gene75260:intron 45.0%
! GTTTTTGATACCATGCCCAC+GGG - chr2.1:43726064-43726083 MS.gene75260:intron 45.0%
! TCGGAGCTGGTTGTTTCATT+AGG + chr2.1:43728563-43728582 None:intergenic 45.0%
! TTGGGTTTGAAATGTGGACG+TGG - chr2.1:43725974-43725993 MS.gene75260:intron 45.0%
! TTTGAAATGTGGACGTGGTG+GGG - chr2.1:43725979-43725998 MS.gene75260:intron 45.0%
! TTTGGGCCCTCCAAATTTTG+TGG - chr2.1:43724761-43724780 MS.gene75260:intron 45.0%
!! ACAGTTTGGCTCTCAAAGTG+AGG + chr2.1:43728717-43728736 None:intergenic 45.0%
!! ATATGATTTCGGTGCTGCAG+TGG + chr2.1:43724673-43724692 None:intergenic 45.0%
!! CCTATGTCCGTTGATTCAAG+TGG - chr2.1:43728750-43728769 MS.gene75260:intron 45.0%
!! CTTTTAGAAGGTTTGCCCGT+GGG + chr2.1:43726082-43726101 None:intergenic 45.0%
!! TGCAGTAATGGATGCCACTT+TGG - chr2.1:43724840-43724859 MS.gene75260:intron 45.0%
AAACCAGGTGCACCAAGCAA+GGG + chr2.1:43726569-43726588 None:intergenic 50.0%
AATTATGTCCCCCGTGACCT+GGG + chr2.1:43724638-43724657 None:intergenic 50.0%
ACATTGCTAATGCACGCACG+TGG - chr2.1:43725535-43725554 MS.gene75260:intron 50.0%
ACCGCAAGGGGAAAGAAGAA+AGG + chr2.1:43725772-43725791 None:intergenic 50.0%
ACTGTGCTCAGTGTACACCT+CGG - chr2.1:43726366-43726385 MS.gene75260:CDS 50.0%
AGAAACCTTGCAGGATGTGG+TGG + chr2.1:43726543-43726562 None:intergenic 50.0%
AGAAGATACCGTTTCGGAGC+TGG + chr2.1:43728576-43728595 None:intergenic 50.0%
ATATCCGTTGTGGGAACTGC+CGG - chr2.1:43727780-43727799 MS.gene75260:intron 50.0%
CAAAGTGAGGTCTTGACTGC+AGG + chr2.1:43728704-43728723 None:intergenic 50.0%
CAAGGGAACAGAAACCTTGC+AGG + chr2.1:43726552-43726571 None:intergenic 50.0%
CATGGACACACATACGTGTG+TGG + chr2.1:43725184-43725203 None:intergenic 50.0%
CCAGGGCCACAAAATTTGGA+GGG + chr2.1:43724770-43724789 None:intergenic 50.0%
CCCCTTGTGCAAAAACCCTT+TGG - chr2.1:43725955-43725974 MS.gene75260:intron 50.0%
CGGAGCCACATTATGTGTAC+TGG - chr2.1:43724343-43724362 MS.gene75260:CDS 50.0%
CTCATGACAGTCGCGTGTTA+TGG + chr2.1:43728386-43728405 None:intergenic 50.0%
CTTTCCTCTGCATTGCTTGG+TGG - chr2.1:43726402-43726421 MS.gene75260:CDS 50.0%
GCATGATCAGTGGATCGATG+TGG - chr2.1:43729611-43729630 MS.gene75260:intron 50.0%
GCCAGCTAAGGGCCTAAATA+AGG + chr2.1:43726644-43726663 None:intergenic 50.0%
GCCCATAACCAATAGTTGGG+TGG + chr2.1:43727279-43727298 None:intergenic 50.0%
GCCTTCCATTGGTCATCTAC+AGG + chr2.1:43728520-43728539 None:intergenic 50.0%
GCTAAGGGCCTAAATAAGGC+CGG + chr2.1:43726640-43726659 None:intergenic 50.0%
GCTTCATTTGCAGCACACCA+TGG + chr2.1:43726511-43726530 None:intergenic 50.0%
GGCCTGATTGCACTTGCTTT+GGG - chr2.1:43724789-43724808 MS.gene75260:intron 50.0%
GGTCATCTACAGGACAATCC+AGG + chr2.1:43728510-43728529 None:intergenic 50.0%
TAATTATGTCCCCCGTGACC+TGG + chr2.1:43724639-43724658 None:intergenic 50.0%
TGAGCACAGTAGATAGGGCA+GGG + chr2.1:43726356-43726375 None:intergenic 50.0%
TGAGTTTCGAACCCAGGTCA+CGG - chr2.1:43724624-43724643 MS.gene75260:intron 50.0%
TGCTAAGTGCTACACGCCTT+GGG - chr2.1:43726901-43726920 MS.gene75260:intron 50.0%
TGGGGCTGTAGAGTTACTGT+TGG - chr2.1:43726422-43726441 MS.gene75260:intron 50.0%
TGGTGCACCTGGTTTCTATC+TGG - chr2.1:43726574-43726593 MS.gene75260:intron 50.0%
TTGACTGAAGGAGCTCCATG+AGG + chr2.1:43727821-43727840 None:intergenic 50.0%
TTGTGGGCGTTACAACAGAG+AGG - chr2.1:43729295-43729314 MS.gene75260:intron 50.0%
! CCTCCAAATTTTGTGGCCCT+GGG - chr2.1:43724768-43724787 MS.gene75260:intron 50.0%
! GATGTGTCCATGGAGTGCTA+AGG - chr2.1:43727140-43727159 MS.gene75260:intron 50.0%
! GGTTTGAAATGTGGACGTGG+TGG - chr2.1:43725977-43725996 MS.gene75260:intron 50.0%
! TGATTGCACTTGCTTTGGGC+CGG - chr2.1:43724793-43724812 MS.gene75260:intron 50.0%
! TTCCTCTGCATTGCTTGGTG+GGG - chr2.1:43726404-43726423 MS.gene75260:CDS 50.0%
!! ATGGATGCCACTTTGGCTGT+TGG - chr2.1:43724847-43724866 MS.gene75260:intron 50.0%
!! GCCTTATTTAGGCCCTTAGC+TGG - chr2.1:43726640-43726659 MS.gene75260:intron 50.0%
!! GCTTTTAGAAGGTTTGCCCG+TGG + chr2.1:43726083-43726102 None:intergenic 50.0%
!! TTGCTCCTCTAGGGTAAAGC+AGG + chr2.1:43724381-43724400 None:intergenic 50.0%
AAGCAAGTGCAATCAGGCCC+AGG + chr2.1:43724788-43724807 None:intergenic 55.0%
ACACGCGACTGTCATGAGCA+CGG - chr2.1:43728388-43728407 MS.gene75260:intron 55.0%
AGCAAGTGCAATCAGGCCCA+GGG + chr2.1:43724787-43724806 None:intergenic 55.0%
AGGCCCAGGGCCACAAAATT+TGG + chr2.1:43724774-43724793 None:intergenic 55.0%
AGTTTCGAACCCAGGTCACG+GGG - chr2.1:43724626-43724645 MS.gene75260:intron 55.0%
ATGGTGCACTGGACACGCTA+AGG + chr2.1:43726492-43726511 None:intergenic 55.0%
CCCAGGGCCACAAAATTTGG+AGG + chr2.1:43724771-43724790 None:intergenic 55.0%
CGACACACCTTAGCACTCCA+TGG + chr2.1:43727150-43727169 None:intergenic 55.0%
CTGAGCACAGTAGATAGGGC+AGG + chr2.1:43726357-43726376 None:intergenic 55.0%
CTGCTAAGTGCTACACGCCT+TGG - chr2.1:43726900-43726919 MS.gene75260:intron 55.0%
GAAACCAGGTGCACCAAGCA+AGG + chr2.1:43726570-43726589 None:intergenic 55.0%
GAGCACAGTAGATAGGGCAG+GGG + chr2.1:43726355-43726374 None:intergenic 55.0%
GAGTTTCGAACCCAGGTCAC+GGG - chr2.1:43724625-43724644 MS.gene75260:intron 55.0%
GCTAAGTGCTACACGCCTTG+GGG - chr2.1:43726902-43726921 MS.gene75260:intron 55.0%
GGCAGTTCCCACAACGGATA+TGG + chr2.1:43727781-43727800 None:intergenic 55.0%
GGCCCAAAGCAAGTGCAATC+AGG + chr2.1:43724794-43724813 None:intergenic 55.0%
GGGCCTGATTGCACTTGCTT+TGG - chr2.1:43724788-43724807 MS.gene75260:intron 55.0%
GGTGTCAGTACAGGAGTTGG+CGG + chr2.1:43728542-43728561 None:intergenic 55.0%
GTCTAGGAAGGTGGTTGACG+CGG + chr2.1:43729779-43729798 None:intergenic 55.0%
GTGTACCACCACATCCTGCA+AGG - chr2.1:43726535-43726554 MS.gene75260:intron 55.0%
TCCATTCCTGCAGGCACATC+AGG + chr2.1:43725484-43725503 None:intergenic 55.0%
TCCTGATGTGCCTGCAGGAA+TGG - chr2.1:43725480-43725499 MS.gene75260:intron 55.0%
TTAGCGTGTCCAGTGCACCA+TGG - chr2.1:43726491-43726510 MS.gene75260:intron 55.0%
TTGTCCGGCAGTTCCCACAA+CGG + chr2.1:43727787-43727806 None:intergenic 55.0%
! CCCTCCAAATTTTGTGGCCC+TGG - chr2.1:43724767-43724786 MS.gene75260:intron 55.0%
!! AAGTGGCTTTGGGCAAGTGC+TGG + chr2.1:43726666-43726685 None:intergenic 55.0%
AGAAGGTTTGCCCGTGGGCA+TGG + chr2.1:43726077-43726096 None:intergenic 60.0%
AGCCCCACCAAGCAATGCAG+AGG + chr2.1:43726409-43726428 None:intergenic 60.0%
AGGAGTTGGCGGCCTTCCAT+TGG + chr2.1:43728531-43728550 None:intergenic 60.0%
CACGCGACTGTCATGAGCAC+GGG - chr2.1:43728389-43728408 MS.gene75260:intron 60.0%
GTTTCGAACCCAGGTCACGG+GGG - chr2.1:43724627-43724646 MS.gene75260:intron 60.0%
TGCAGCACACCATGGTGCAC+TGG + chr2.1:43726503-43726522 None:intergenic 60.0%
!! GGCAAGTGCTGGCCAGCTAA+GGG + chr2.1:43726655-43726674 None:intergenic 60.0%
!! GTTCCCTTGCTTGGTGCACC+TGG - chr2.1:43726563-43726582 MS.gene75260:intron 60.0%
!! GGGCAAGTGCTGGCCAGCTA+AGG + chr2.1:43726656-43726675 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 43724340 43729858 43724340 ID=MS.gene75260
chr2.1 mRNA 43724340 43729858 43724340 ID=MS.gene75260.t1;Parent=MS.gene75260
chr2.1 exon 43729738 43729858 43729738 ID=MS.gene75260.t1.exon1;Parent=MS.gene75260.t1
chr2.1 CDS 43729738 43729858 43729738 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
chr2.1 exon 43728591 43728701 43728591 ID=MS.gene75260.t1.exon2;Parent=MS.gene75260.t1
chr2.1 CDS 43728591 43728701 43728591 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
chr2.1 exon 43726324 43726436 43726324 ID=MS.gene75260.t1.exon3;Parent=MS.gene75260.t1
chr2.1 CDS 43726324 43726436 43726324 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
chr2.1 exon 43725612 43725674 43725612 ID=MS.gene75260.t1.exon4;Parent=MS.gene75260.t1
chr2.1 CDS 43725612 43725674 43725612 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
chr2.1 exon 43725419 43725490 43725419 ID=MS.gene75260.t1.exon5;Parent=MS.gene75260.t1
chr2.1 CDS 43725419 43725490 43725419 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
chr2.1 exon 43724340 43724435 43724340 ID=MS.gene75260.t1.exon6;Parent=MS.gene75260.t1
chr2.1 CDS 43724340 43724435 43724340 ID=cds.MS.gene75260.t1;Parent=MS.gene75260.t1
Gene Sequence

>MS.gene75260

ATGCGGAGCCACATTATGTGTACTGGGTGTAGGAACATCCTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTACAGTGTGCAGCACAATTACCCCTGTTATTCCTGTTCTTCCTCCTGGTATCTTTCCTTTTACTGTTTTTGTTTTCAATATTTCAAGAATTTTCTTGCTCCATGCTTAGTGTGTTTAGTTAATTTGATTGCATACTTAGACTAAGCAGGGCCCGCGTTGATCCTTCCTTTGATTTTTTTTTTTTAACAGAAAATGTAATATTGCAAAACGTGAGTTTCGAACCCAGGTCACGGGGGACATAATTAAAACGCATTTACCACTGCAGCACCGAAATCATATACCCAATTTAGTGGGAAATATTATTTATACATTAAAAGAATGGCCCCCTCATAAAAACAACAATTAAATTTGGGCCCTCCAAATTTTGTGGCCCTGGGCCTGATTGCACTTGCTTTGGGCCGGCCCTGCGATTAAGTTGTAAGTTTTTGCAGTAATGGATGCCACTTTGGCTGTTGGTTTTTCCAATAGAAAAATTAACTCAACAATACTAGTTTTGTTCATAATTGAACTCAAGTTCTATAAAATAGTTCAACTGCTATCATGATTCCTCATTCCCGATGAAAACTAGTGTAGCATTTCGCCATCTTCATATGCTTTTTGGTGTAGCATATCATCAACTTACCAAAGGAGTAACTTTTGTCATACTTGCCCCACTTAACAACTCTTTGTTGACGTTAAATATTGTAATTTTTTTAGTTGATATTTAGTTATATTTTAAAAAGTATATTATACATTAAATTGAAAACTCCTTCTTGGAATAATCGGATCCACACACGTATGTGTGTCCATGCGTTTATGTATTGAAGGTAGGATATTCTTTTTTATGCTGTGATATACGTATTCACTTCTTGTCTGATCCAAATTAGGATCTAGAGGTTGGTAAAGATGGTGTGCCCTATATTGATCGTTATTAGTCCATATCTATAGTCTATTTAGCCAATTATTAACAAGGGATGCATACGTGAGTATAAAGTAGAAAGCAACTATGCAACTAGCCAGATTAAAAATTCACTTGTTCTTAGATTTAAACTATAAACTAAATGGTTACATCCAGGGATCTAAAATTTCCTGATGTGCCTGCAGGAATGGAAATGTCACAACTTTATTGTGGAGGTTGTAGAACATTGCTAATGCACGCACGTGGAGCTACTACCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTGCCAGGTATGATATATATTTACAATTATGTGTTGCCAGATCTGTACAGCTTTTACACTGCATGCTAATTTGCTGATTAATTTACGTGTTGCTTGATCATTAAATACACTTAATTCATCGATGGTATACCAAACCCTGGTATACACTTAATTTATAATTCTTTCCTTCCTTTCTTCTTTCCCCTTGCGGTGTATTTCAGCTATATATGTCTGTGAGAAATTAAAGAATGTAAGCCAACTATATGTACATCATACTCAAACAAGTATTTGTTGACTACTTCCAGTGACCTACTCTCCACAAATATTGTACTGTTTAGCGAAGGATCATGAATAATTTTTATATCTCACACACTTCCCCTTGTGCAAAAACCCTTTGGGTTTGAAATGTGGACGTGGTGGGGAAATTCACTTTCATTCAGAAGAATGGGAGCAAAAAGGGTTGACTTTCGATTGGTTGGTCATAGTTTTTGATACCATGCCCACGGGCAAACCTTCTAAAAGCTTAATATGTTTGGTAAAATGCTTTTTTTGTCTCTAATAACTAAAAAATTCTGCAATAAATCCATTTAACGTAATATCTTCTGATTATTCCAAGGACAGCATAATTTTAATTATAATTATATATCACCAAGGTGTGTGGTATAGTTGAGACATAGGTTCTCAAATTATCTTTCCCAACATGGTATTCGGATCCATACTTGATGGACCATGCAATATTTTTGTAGTTAACTGACTGTGTTTCAACTTCGATCCCCTGCCCTATCTACTGTGCTCAGTGTACACCTCGGTGTAGCCTTTTCTCTTTCCTCTGCATTGCTTGGTGGGGCTGTAGAGTTACTGTTGGTGAGCATTATCTTCACTGACCTACCCCACTGTCATCCTTAATATCCTTAGCGTGTCCAGTGCACCATGGTGTGCTGCAAATGAAGCTGTTGTGTACCACCACATCCTGCAAGGTTTCTGTTCCCTTGCTTGGTGCACCTGGTTTCTATCTGGTTGTCAAGGGATGTGTTCCATTCAACTCAATAATTTTTGTCCGGCCTTATTTAGGCCCTTAGCTGGCCAGCACTTGCCCAAAGCCACTTTGATACCTTGGAAGTTTCACTTTTGGGTTTTTGTACACACAATGATGGTAGAGACCCTTGTTTTCACCCATACTGTGTTGGTTGAGTCTTCTAGCCTAATTTTTTGTATCCCCGAGTCCTTATATGGCATCAAACAGTCTCTTCAAGAATGGTTCCATAGGTTCAGTTTGTTATTCCACAATTTGATATTATTTTGAATAAATTTAACCTTCTACTGCTAAGTGCTACACGCCTTGGGGCCTCATCTATTTGATTGTGTATGAATGATATTATGATAGTACTGGTATCAAGACAGTAAAGGAAATTGAATTCTAATGCTAAAAGATAAAATAAAACTTCCCTTGATCTGTTTCAATTCCAAGCTACTTTCGAGAAGTCTGGCCCGCTCCTTAACAACTCCACAATCATCATTGCTTAGACAGATCTTTAACTCTCGTATCATGGATTTGTCTGAGATGTGTCCATGGAGTGCTAAGGTGTGTCGAAGCAAAGAATTTTTTTTTCTGGGGACACTTGTCTGAGTTGTCGTACAAGTGTCAGACACAAGGACACACACAATCTCAGGGGAGAACGTGCTTCATAGCTAACAACCACCCAACTATTGGTTATGGGCCTCTCCATTTCTTTTTAACGAATAAGCAGTTGGATATGACTCATATGAGCATATCAACATAAAAGTCGAATAAACCAGCCTATGATTTTTTTCCTAATCAATATCATCCACTTGCAGTAATTCCTTATCTATAAACTACAAAAACAAGATAGAATCTTGGTTCATTTGGATATGAGCATAACCCGAAATTCAGATTAGTTTTAAATAACTTGATTAGTTTTCTATGCTTGATGACAGTTTGTATTGAAAAATGCTGTCATTATTATCCACATAGCTCAATAATGAGGGCGTTTTAAATGTAAAAATTTACGTGTAAACTTCAGGATGTTTGGTGTTCATGAAGTTTCATTTAGTTAGTTCCATTTTCTTCATCTATGGATATTTTATTTTATTGTAATGATTAATGTTGCCAATCATGCATGCTAAGTTGTTTACTGACTTATTGTTGGCTTTGCCTTTAAAGATTCTAATCAAATGAACCATATCCGTTGTGGGAACTGCCGGACAACACTCATGTATCCTCATGGAGCTCCTTCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCGATGTAAGTGTACATTGATGGATTATATTAATCTGTTATTTCACTTTCTATTTTCACAAATATTTTCAGTAAATTAATTCTGTTGATCTGGAGTTCATTTTGTTGTAAACTTAGTTAGTTGTGCCAATCAAGATTCTATTTTGATAAGATTGTAGCTAAAGATTTTAGACTGATTGGATTTGAAGAATAGGAAGTAAAGTTGTAGCTAATTGATTATGTTTTATGATTAACTTGTTGAAAATCAGAAAATAATTGGTCAGATTACGTCATTTTGTTCGGGCTTCAATTTGTTGGGTAGTTTCTGCAGTTATTAGAACTATCTGCACTATGTTGAAAGATATTTAAGAAAAGAAAGACAGGATCGTAGGAAAGAACTATAAAAGCTTGATATAGATGGGTACATAAATGTTATGATGCATGTTATTTTAATAGAAAAAGATTGCATTTATTGTTATATACATTACTTCAAATATATTTTAGGATTCTGGTACTTGTATGGTTATAACTGTCTCCATAACACGCGACTGTCATGAGCACGGGTTCAAATTCCTCTATGCCTGCAATTTACTTGATATCCGTTGTCAACATTTTGCATTTTATGTGGTTTTGTATTGAGCTCATATCTTTTACCCTTTCCTGGATTGTCCTGTAGATGACCAATGGAAGGCCGCCAACTCCTGTACTGACACCTAATGAAACAACCAGCTCCGAAACGGTATCTTCTACTGCATCACTATACTTTTGACTTTCTTTTGGTGATTATTCATATTACATGTCGAATTATTGTTATGACATTGATATCTAACAAATATACATGTGATCTTAATACCCTGCAGTCAAGACCTCACTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAATTACTCTCTCTTTTATTTTTTTGTTAGTTTTGGATATATATTTTTTGAGTAAATATGCTTACTCCCTATAGAATAAGTGAATTTTGGTTCTGGTCCCCTGAAAAAAAAAAACTTTGATTTTTATTCCTTTATAATATGAGATGACTATTTTTGGTCTCTACCGACAGGTGACATTCTTTAACTGCCTGTGTCTAATCACTACTGATATGTCATGTCATCTCGAATGGCACCAACTAATTTCTGTACTCTACCGTAACTTGCACGGATTCTCCTAAAATGAATTCTTTCTTCCCTCAAATGGATGTTTGGGACCAAATCAGTAATTTCATATTTTAGAGTGATGAAAACTATAAAATATTTTACAGGAATCTTAATTAAAAGTTTCCATTGTATAGTTACCATATCCTGCATTTTCTACTGGTTCAGTGATTTTTTGTTGTTGTTGTTGTGATATTTGAGCAAAACAAGATTTAATTTTAAGAATGTGAACTGGCACAGGTAAGCAATGTTGTTGTGGGCGTTACAACAGAGAGGAAATGATTGCTGATGCTTTAAAACGTTGTTGGTTTATGTGATGTTGAGGCCTGCAATGATTGAATTGAAGTCTAGACTCTTCTCCGTTCAAGGTTTAAATTGATTTCATGTATTTATATGCATTATACAAGGTTTGAAATGTGAGAAAGTGCAGAAAGCTTTTCAATTTTGTGATTTGCTACTTTTTTGCCTCATTTCGCATCTACATCCAAATCGATAGGTTCATTTTGATTTTGTCTCGAATTACAAGTCCTGGATGTGGTTTTGATGTTTATGTTTTGGTGACTTGGTAAGCATGATCAGTGGATCGATGTGGTGTTCAAATTGCATTTTTACGTAGAAAAGTTGATTTTAAACAATTATAGATATTCAATGGTGCAATTATACATTACCAATCTTGTCCTTTTTTTAATTACCAAAATAAATCGTCCTTTTTGCAATATAGCGTGTGTTTGTTTCCGCGTCAACCACCTTCCTAGACACAAGTTCTATTGGAGCAAGAATTGCTAGGTTTTCATTTTTGCCGGAATATGGCCACTAG

Protein sequence

>MS.gene75260.t1

MRSHIMCTGCRNILLYPRGASNVCCTVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVLTPNETTSSETSRPHFESQTVVVENPMSVDSSGKLRVFVSASTTFLDTSSIGARIARFSFLPEYGH