Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76038.t1 | XP_003592098.1 | 90.9 | 44 | 4 | 0 | 211 | 254 | 165 | 208 | 4.60E-13 | 85.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76038.t1 | P37220 | 62.5 | 40 | 15 | 0 | 215 | 254 | 24 | 63 | 7.2e-07 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76038.t1 | G7IBZ5 | 90.9 | 44 | 4 | 0 | 211 | 254 | 165 | 208 | 3.3e-13 | 85.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene76038 | 0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene76038 | 0.818189 | 2.23E-52 | -1.69E-46 |
| MS.gene049599 | MS.gene76038 | -0.80254 | 5.35E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene76038 | 0.831373 | 1.73E-55 | -1.69E-46 |
| MS.gene050060 | MS.gene76038 | 0.818865 | 1.57E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene76038 | 0.820055 | 8.40E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene76038 | -0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene76038 | 0.801951 | 7.07E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene76038 | 0.8543 | 1.35E-61 | -1.69E-46 |
| MS.gene052135 | MS.gene76038 | 0.810777 | 9.74E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene76038 | 0.826904 | 2.10E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene76038 | 0.824195 | 9.21E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene76038 | 0.860386 | 2.14E-63 | -1.69E-46 |
| MS.gene052758 | MS.gene76038 | 0.804995 | 1.65E-49 | -1.69E-46 |
| MS.gene053073 | MS.gene76038 | 0.821062 | 4.93E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene76038 | 0.836199 | 1.08E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene76038 | 0.802193 | 6.30E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene76038 | 0.820646 | 6.14E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene76038 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene054542 | MS.gene76038 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene76038 | 0.833583 | 4.91E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene76038 | 0.843359 | 1.47E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene76038 | 0.804868 | 1.76E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene76038 | 0.809903 | 1.50E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene76038 | 0.806895 | 6.59E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene76038 | -0.8144 | 1.57E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene76038 | 0.831323 | 1.78E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene76038 | 0.814818 | 1.27E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene76038 | 0.802829 | 4.66E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene76038 | 0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene76038 | 0.806422 | 8.29E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene76038 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene76038 | 0.84304 | 1.79E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene76038 | 0.809967 | 1.46E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene76038 | 0.876137 | 1.77E-68 | -1.69E-46 |
| MS.gene059420 | MS.gene76038 | 0.814637 | 1.39E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene76038 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene76038 | 0.820605 | 6.28E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene76038 | 0.818866 | 1.57E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene76038 | 0.816854 | 4.46E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene76038 | 0.827557 | 1.46E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene76038 | 0.812712 | 3.69E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene76038 | 0.800456 | 1.43E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene76038 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene76038 | 0.862311 | 5.54E-64 | -1.69E-46 |
| MS.gene061154 | MS.gene76038 | 0.800408 | 1.46E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76038.t1 | MTR_1g098680 | 75.987 | 304 | 25 | 5 | 1 | 303 | 1 | 257 | 9.57e-62 | 196 |
| MS.gene76038.t1 | MTR_6g037220 | 70.330 | 91 | 27 | 0 | 212 | 302 | 20 | 110 | 5.25e-20 | 84.0 |
| MS.gene76038.t1 | MTR_0583s0010 | 68.132 | 91 | 26 | 1 | 212 | 302 | 20 | 107 | 4.72e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 103 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAACACCATTTCTT+TGG | 0.265818 | 1.1:+70975158 | MS.gene76038:CDS |
| TTGTGCCTGTGAGCATTCTC+TGG | 0.272448 | 1.1:-70975026 | None:intergenic |
| CCATGAGGATCATGAGAAAA+AGG | 0.283151 | 1.1:+70975103 | MS.gene76038:CDS |
| ACCACCACCGGTGGTGGTTT+TGG | 0.301983 | 1.1:-70973909 | None:intergenic |
| TCCGCCACCGGTGGTTGTTT+TGG | 0.307495 | 1.1:-70973708 | None:intergenic |
| GGCGGCTACGGCGGTGGTTA+TGG | 0.318700 | 1.1:+70973626 | MS.gene76038:CDS |
| GGCGGCTACGGTGGTGGTTA+TGG | 0.321562 | 1.1:+70973824 | MS.gene76038:CDS |
| ACAACCACCGGTGGCGGATA+TGG | 0.322982 | 1.1:+70973713 | MS.gene76038:CDS |
| GCCGCCACCAGTGGTTGTTT+TGG | 0.330964 | 1.1:-70973609 | None:intergenic |
| GGCGGCTACGGTGGTGGATA+TGG | 0.331422 | 1.1:+70973875 | MS.gene76038:CDS |
| GGTGGCTACGGTGGTGGTTA+TGG | 0.331534 | 1.1:+70973674 | MS.gene76038:CDS |
| CATGAGCATCTTGGTGAGTT+AGG | 0.335349 | 1.1:+70973992 | MS.gene76038:CDS |
| GGCGGCTACGGTGGTGGTTA+TGG | 0.343719 | 1.1:+70973773 | MS.gene76038:CDS |
| GGCGGATATGGTGGTGGTTA+TGG | 0.349031 | 1.1:+70973725 | MS.gene76038:CDS |
| ACAGGTGATGACTATGATTC+TGG | 0.353087 | 1.1:+70973428 | MS.gene76038:CDS |
| ACCACCACCGGTGGTGGTTA+TGG | 0.357161 | 1.1:+70973914 | MS.gene76038:CDS |
| GTAGCCACCACCAGTGGTTT+TGG | 0.366481 | 1.1:-70973660 | None:intergenic |
| GAGGAAGAAGAAGAAGTTCA+TGG | 0.387151 | 1.1:+70975134 | MS.gene76038:CDS |
| TCATATGGTAATGACAATTC+TGG | 0.390159 | 1.1:+70973512 | MS.gene76038:CDS |
| GAGTTAGGTGCTGCAGCTGC+TGG | 0.393240 | 1.1:+70974007 | MS.gene76038:CDS |
| GAAGCAGCTGCAGTGGGATC+TGG | 0.415672 | 1.1:+70975068 | MS.gene76038:CDS |
| TACTCTAATAATGAAACATC+TGG | 0.429220 | 1.1:+70973575 | MS.gene76038:CDS |
| GGTTACAATAAAACATCATA+TGG | 0.436340 | 1.1:+70973497 | MS.gene76038:CDS |
| TCTGGTGGTGACTATGAAAC+TGG | 0.450209 | 1.1:+70973530 | MS.gene76038:CDS |
| ACTGGTGGCGGCTACGGCGG+TGG | 0.456265 | 1.1:+70973620 | MS.gene76038:CDS |
| ACAACCACTGGTGGCGGCTA+CGG | 0.469364 | 1.1:+70973614 | MS.gene76038:CDS |
| ACTGGTGGCGGCTACGGTGG+TGG | 0.471209 | 1.1:+70973818 | MS.gene76038:CDS |
| ACTGGAGGCGGCTACGGTGG+TGG | 0.471438 | 1.1:+70973869 | MS.gene76038:CDS |
| TGACCACTGTCAGTGTCTAT+AGG | 0.473940 | 1.1:-70973386 | None:intergenic |
| ACCACTGGCGGCTACGGTGG+TGG | 0.476187 | 1.1:+70973767 | MS.gene76038:CDS |
| CATATGTTCAGCCAAAGAAA+TGG | 0.483204 | 1.1:-70975169 | None:intergenic |
| ACAACCACTGGTGGCGGCTA+CGG | 0.484339 | 1.1:+70973812 | MS.gene76038:CDS |
| TACAATGATGACCAGCCATC+TGG | 0.494200 | 1.1:+70973470 | MS.gene76038:CDS |
| ACCAAAACAACCACCGGTGG+CGG | 0.496756 | 1.1:+70973707 | MS.gene76038:CDS |
| AGTTGCAGAAGCAGCTGCAG+TGG | 0.498157 | 1.1:+70975061 | MS.gene76038:CDS |
| ACCAAAACCACCACCGGTGG+TGG | 0.498197 | 1.1:+70973908 | MS.gene76038:CDS |
| GCCAAAACAACCACTGGTGG+CGG | 0.500275 | 1.1:+70973608 | MS.gene76038:CDS |
| AAAACAACCACTGGCGGCTA+CGG | 0.502509 | 1.1:+70973761 | MS.gene76038:CDS |
| ACTGGTGGTGGCTACGGTGG+TGG | 0.506091 | 1.1:+70973668 | MS.gene76038:CDS |
| TGTGCCTGTGAGCATTCTCT+GGG | 0.507199 | 1.1:-70975025 | None:intergenic |
| CACAGCAAACATGAGCATCT+TGG | 0.507345 | 1.1:+70973983 | MS.gene76038:CDS |
| CATCATCATGCTTCTTGTGA+TGG | 0.509136 | 1.1:-70973352 | None:intergenic |
| AACAAAACATCATACTCTAC+AGG | 0.515763 | 1.1:+70973410 | MS.gene76038:CDS |
| ACCATAACCACCACCGGTGG+TGG | 0.516051 | 1.1:-70973915 | None:intergenic |
| ACAACCACTGGAGGCGGCTA+CGG | 0.519220 | 1.1:+70973863 | MS.gene76038:CDS |
| GACACCAAAACCACTGGTGG+TGG | 0.521255 | 1.1:+70973656 | MS.gene76038:CDS |
| AAAACCACTGGTGGTGGCTA+CGG | 0.535946 | 1.1:+70973662 | MS.gene76038:CDS |
| GCAGCTGCAGTGGGATCTGG+TGG | 0.536922 | 1.1:+70975071 | MS.gene76038:CDS |
| AATGAAACATCTGGTGGCTA+TGG | 0.540775 | 1.1:+70973584 | MS.gene76038:CDS |
| ACTAAAACAACCACTGGTGG+CGG | 0.542116 | 1.1:+70973806 | MS.gene76038:CDS |
| ACCACTGGTGGCGGCTACGG+TGG | 0.543033 | 1.1:+70973815 | MS.gene76038:CDS |
| GATGGAAGAGGCCACGGCTA+CGG | 0.545278 | 1.1:-70973334 | None:intergenic |
| GACTCTGACACCAAAACCAC+TGG | 0.545560 | 1.1:+70973650 | MS.gene76038:CDS |
| GTTGCAGAAGCAGCTGCAGT+GGG | 0.546096 | 1.1:+70975062 | MS.gene76038:CDS |
| ACCACTGGTGGCGGCTACGG+CGG | 0.552249 | 1.1:+70973617 | MS.gene76038:CDS |
| TGTAACCACCACCAGATGGC+TGG | 0.555821 | 1.1:-70973481 | None:intergenic |
| AGCATGATGATGATGATAGT+AGG | 0.556478 | 1.1:+70973363 | MS.gene76038:CDS |
| ACCACCGGTGGCGGATATGG+TGG | 0.560863 | 1.1:+70973716 | MS.gene76038:CDS |
| ACCGGTGGCGGATATGGTGG+TGG | 0.561478 | 1.1:+70973719 | MS.gene76038:CDS |
| ACTAAAACAACCACTGGAGG+CGG | 0.561518 | 1.1:+70973857 | MS.gene76038:CDS |
| ACCACTGGAGGCGGCTACGG+TGG | 0.561554 | 1.1:+70973866 | MS.gene76038:CDS |
| CATGCTTCTTGTGATGGAAG+AGG | 0.565809 | 1.1:-70973346 | None:intergenic |
| ACAACCACTGGCGGCTACGG+TGG | 0.567166 | 1.1:+70973764 | MS.gene76038:CDS |
| TTTCTCATGATCCTCATGGA+AGG | 0.569121 | 1.1:-70975099 | None:intergenic |
| TCTGACACTAAAACAACCAC+TGG | 0.570147 | 1.1:+70973851 | MS.gene76038:CDS |
| TGATGATGTTGATTATAAGA+AGG | 0.572766 | 1.1:+70973949 | MS.gene76038:CDS |
| ACCACTGGTGGTGGCTACGG+TGG | 0.575768 | 1.1:+70973665 | MS.gene76038:CDS |
| ACCACCGTAGCCGCCTCCAG+TGG | 0.576587 | 1.1:-70973867 | None:intergenic |
| TTAGGTGCTGCAGCTGCTGG+TGG | 0.580522 | 1.1:+70974010 | MS.gene76038:CDS |
| TCTGACACTAAAACAACCAC+TGG | 0.581882 | 1.1:+70973752 | MS.gene76038:CDS |
| TCTGACACTAAAACAACCAC+TGG | 0.583853 | 1.1:+70973800 | MS.gene76038:CDS |
| ACCACCACCATATCCGCCAC+CGG | 0.592287 | 1.1:-70973720 | None:intergenic |
| TCTGACACCAAAACAACCAC+CGG | 0.597416 | 1.1:+70973701 | MS.gene76038:CDS |
| TCTGACACCAAAACCACCAC+CGG | 0.597416 | 1.1:+70973902 | MS.gene76038:CDS |
| GACACTAAAACAACCACTGG+TGG | 0.602888 | 1.1:+70973803 | MS.gene76038:CDS |
| CAGCTGCAGTGGGATCTGGT+GGG | 0.605425 | 1.1:+70975072 | MS.gene76038:CDS |
| TCTTGTGATGGAAGAGGCCA+CGG | 0.606734 | 1.1:-70973340 | None:intergenic |
| GACACTAAAACAACCACTGG+CGG | 0.607430 | 1.1:+70973755 | MS.gene76038:CDS |
| ATCGTCACCATAACCACCAC+CGG | 0.607906 | 1.1:-70973921 | None:intergenic |
| ACCACCATATCCGCCACCGG+TGG | 0.608942 | 1.1:-70973717 | None:intergenic |
| TGATGTTGATTATAAGAAGG+AGG | 0.610955 | 1.1:+70973952 | MS.gene76038:CDS |
| TATGGTGCCAAAACAACCAC+TGG | 0.612429 | 1.1:+70973602 | MS.gene76038:CDS |
| TCTAATAATGAAACATCTGG+TGG | 0.616695 | 1.1:+70973578 | MS.gene76038:CDS |
| ACCACCGTAGCCGCCACCAG+TGG | 0.622033 | 1.1:-70973816 | None:intergenic |
| TTATTGTAACCACCACCAGA+TGG | 0.622037 | 1.1:-70973485 | None:intergenic |
| ACCACCACCGTAGCCGCCAG+TGG | 0.623805 | 1.1:-70973768 | None:intergenic |
| ACGGTTCTCTTCATCAGACA+TGG | 0.625188 | 1.1:-70973315 | None:intergenic |
| GACACTAAAACAACCACTGG+AGG | 0.626777 | 1.1:+70973854 | MS.gene76038:CDS |
| ACCGCCGTAGCCGCCACCAG+TGG | 0.626903 | 1.1:-70973618 | None:intergenic |
| GATGACCAGCCATCTGGTGG+TGG | 0.627887 | 1.1:+70973476 | MS.gene76038:CDS |
| CAAGATGCTCATGTTTGCTG+TGG | 0.630178 | 1.1:-70973982 | None:intergenic |
| GACACCAAAACCACCACCGG+TGG | 0.634543 | 1.1:+70973905 | MS.gene76038:CDS |
| GATGAAGAGAACCGTAGCCG+TGG | 0.635065 | 1.1:+70973323 | MS.gene76038:CDS |
| ACCACCGTAGCCACCACCAG+TGG | 0.645976 | 1.1:-70973666 | None:intergenic |
| AAGACCCAGAGAATGCTCAC+AGG | 0.646034 | 1.1:+70975021 | MS.gene76038:CDS |
| TCTGACACCAAAACCACTGG+TGG | 0.658393 | 1.1:+70973653 | MS.gene76038:CDS |
| TGGTGGGTTCGCCTTCCATG+AGG | 0.661123 | 1.1:+70975088 | MS.gene76038:CDS |
| GGTGCCAAAACAACCACTGG+TGG | 0.667985 | 1.1:+70973605 | MS.gene76038:CDS |
| GACACCAAAACAACCACCGG+TGG | 0.679833 | 1.1:+70973704 | MS.gene76038:CDS |
| GTCACCATAACCACCACCGG+TGG | 0.707664 | 1.1:-70973918 | None:intergenic |
| AATGATGACCAGCCATCTGG+TGG | 0.714048 | 1.1:+70973473 | MS.gene76038:CDS |
| TATGGTAATGACAATTCTGG+TGG | 0.722206 | 1.1:+70973515 | MS.gene76038:CDS |
| AGGCCTATAGACACTGACAG+TGG | 0.728496 | 1.1:+70973383 | MS.gene76038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATAAAAAAAATA+AGG | - | chr1.1:70974409-70974428 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTTTATTTTTT+TGG | + | chr1.1:70974749-70974768 | MS.gene76038:intron | 0.0% |
| !! | AAAAAATTAATTACAAAGTT+TGG | - | chr1.1:70974707-70974726 | None:intergenic | 10.0% |
| !! | AGAAACAAATAACAAAAATA+TGG | - | chr1.1:70974092-70974111 | None:intergenic | 15.0% |
| !! | GAAACAAATAACAAAAATAT+GGG | - | chr1.1:70974091-70974110 | None:intergenic | 15.0% |
| !!! | AATTATTCAAATGTTTTGTA+AGG | - | chr1.1:70974192-70974211 | None:intergenic | 15.0% |
| !!! | TACTTTCAAATTTTCAATTT+TGG | - | chr1.1:70974940-70974959 | None:intergenic | 15.0% |
| !! | AATGCAATGTTTAAATACTA+CGG | - | chr1.1:70974607-70974626 | None:intergenic | 20.0% |
| !!! | AATCAATAAATTTTCTCTGA+TGG | + | chr1.1:70974142-70974161 | MS.gene76038:intron | 20.0% |
| !!! | TTAATGCAATTTTCCTATTA+TGG | - | chr1.1:70974652-70974671 | None:intergenic | 20.0% |
| ! | AAATAAAATACGCAAGAACT+TGG | - | chr1.1:70974794-70974813 | None:intergenic | 25.0% |
| ! | AATAAAATACGCAAGAACTT+GGG | - | chr1.1:70974793-70974812 | None:intergenic | 25.0% |
| ! | GACTCATATTCATTAATTAG+TGG | + | chr1.1:70974522-70974541 | MS.gene76038:intron | 25.0% |
| ! | GGTTACAATAAAACATCATA+TGG | + | chr1.1:70973497-70973516 | MS.gene76038:CDS | 25.0% |
| ! | TAAATAGCAATTAGGAGTAA+TGG | - | chr1.1:70974062-70974081 | None:intergenic | 25.0% |
| ! | TACTCTAATAATGAAACATC+TGG | + | chr1.1:70973575-70973594 | MS.gene76038:CDS | 25.0% |
| ! | TGTAAAAATTCGATCTTGAT+TGG | + | chr1.1:70974821-70974840 | MS.gene76038:intron | 25.0% |
| ! | TTACGCTATAAATAGACATA+GGG | + | chr1.1:70974891-70974910 | MS.gene76038:intron | 25.0% |
| ! | TTCCTATTATGGAAATCTTA+GGG | - | chr1.1:70974641-70974660 | None:intergenic | 25.0% |
| ! | TTTCCTATTATGGAAATCTT+AGG | - | chr1.1:70974642-70974661 | None:intergenic | 25.0% |
| !! | TGATGATGTTGATTATAAGA+AGG | + | chr1.1:70973949-70973968 | MS.gene76038:CDS | 25.0% |
| !!! | ATTTTTTTGGTACAAGAAGA+GGG | + | chr1.1:70974762-70974781 | MS.gene76038:intron | 25.0% |
| !!! | TATTTTTTTGGTACAAGAAG+AGG | + | chr1.1:70974761-70974780 | MS.gene76038:intron | 25.0% |
| AACAAAACATCATACTCTAC+AGG | + | chr1.1:70973410-70973429 | MS.gene76038:CDS | 30.0% | |
| AACATCCAACCAAATATGAA+CGG | - | chr1.1:70974848-70974867 | None:intergenic | 30.0% | |
| AAGAAGAAACACCATTTCTT+TGG | + | chr1.1:70975158-70975177 | MS.gene76038:CDS | 30.0% | |
| GGAGAGATTAAATAGCAATT+AGG | - | chr1.1:70974070-70974089 | None:intergenic | 30.0% | |
| GTTACGCTATAAATAGACAT+AGG | + | chr1.1:70974890-70974909 | MS.gene76038:intron | 30.0% | |
| TCTAATAATGAAACATCTGG+TGG | + | chr1.1:70973578-70973597 | MS.gene76038:CDS | 30.0% | |
| TGAGAAAAAGGAAACAAAAG+AGG | + | chr1.1:70975115-70975134 | MS.gene76038:CDS | 30.0% | |
| ! | TCATATGGTAATGACAATTC+TGG | + | chr1.1:70973512-70973531 | MS.gene76038:CDS | 30.0% |
| ! | TGATGTTGATTATAAGAAGG+AGG | + | chr1.1:70973952-70973971 | MS.gene76038:CDS | 30.0% |
| ! | TTCACTAGATGTTAGTTTAG+TGG | - | chr1.1:70974317-70974336 | None:intergenic | 30.0% |
| AATGATTCTCTCAAACATCG+TGG | - | chr1.1:70974566-70974585 | None:intergenic | 35.0% | |
| ATATTTGGTTGGATGTTGGT+AGG | + | chr1.1:70974851-70974870 | MS.gene76038:intron | 35.0% | |
| GTTCATATTTGGTTGGATGT+TGG | + | chr1.1:70974847-70974866 | MS.gene76038:intron | 35.0% | |
| TGTAATCTCCAACAACAAAG+TGG | - | chr1.1:70974675-70974694 | None:intergenic | 35.0% | |
| TTGATTGGACCGTTCATATT+TGG | + | chr1.1:70974836-70974855 | MS.gene76038:intron | 35.0% | |
| ! | AGCATGATGATGATGATAGT+AGG | + | chr1.1:70973363-70973382 | MS.gene76038:CDS | 35.0% |
| ! | TATGGTAATGACAATTCTGG+TGG | + | chr1.1:70973515-70973534 | MS.gene76038:CDS | 35.0% |
| ! | TGCATTAACCACTTTGTTGT+TGG | + | chr1.1:70974664-70974683 | MS.gene76038:intron | 35.0% |
| AATGAAACATCTGGTGGCTA+TGG | + | chr1.1:70973584-70973603 | MS.gene76038:CDS | 40.0% | |
| ACAGGTGATGACTATGATTC+TGG | + | chr1.1:70973428-70973447 | MS.gene76038:CDS | 40.0% | |
| CATCATCATGCTTCTTGTGA+TGG | - | chr1.1:70973355-70973374 | None:intergenic | 40.0% | |
| CCATGAGGATCATGAGAAAA+AGG | + | chr1.1:70975103-70975122 | MS.gene76038:CDS | 40.0% | |
| CGCCCTAAGATTTCCATAAT+AGG | + | chr1.1:70974636-70974655 | MS.gene76038:intron | 40.0% | |
| GAGGAAGAAGAAGAAGTTCA+TGG | + | chr1.1:70975134-70975153 | MS.gene76038:CDS | 40.0% | |
| GAGTCATGCTCAACAAGATT+AGG | - | chr1.1:70974507-70974526 | None:intergenic | 40.0% | |
| TCTGACACTAAAACAACCAC+TGG | + | chr1.1:70973752-70973771 | MS.gene76038:CDS | 40.0% | |
| TTATTGTAACCACCACCAGA+TGG | - | chr1.1:70973488-70973507 | None:intergenic | 40.0% | |
| TTGGACCGTTCATATTTGGT+TGG | + | chr1.1:70974840-70974859 | MS.gene76038:intron | 40.0% | |
| TTTCTCATGATCCTCATGGA+AGG | - | chr1.1:70975102-70975121 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTCATGATCCTCA+TGG | - | chr1.1:70975106-70975125 | None:intergenic | 40.0% |
| AAACATCGTGGAACGACTCA+AGG | - | chr1.1:70974554-70974573 | None:intergenic | 45.0% | |
| ACTAAAACAACCACTGGAGG+CGG | + | chr1.1:70973857-70973876 | MS.gene76038:CDS | 45.0% | |
| ACTAAAACAACCACTGGTGG+CGG | + | chr1.1:70973806-70973825 | MS.gene76038:CDS | 45.0% | |
| CACAGCAAACATGAGCATCT+TGG | + | chr1.1:70973983-70974002 | MS.gene76038:CDS | 45.0% | |
| CATGAGCATCTTGGTGAGTT+AGG | + | chr1.1:70973992-70974011 | MS.gene76038:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+AGG | + | chr1.1:70973755-70973774 | MS.gene76038:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+CGG | + | chr1.1:70973755-70973774 | MS.gene76038:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+TGG | + | chr1.1:70973755-70973774 | MS.gene76038:CDS | 45.0% | |
| TACAATGATGACCAGCCATC+TGG | + | chr1.1:70973470-70973489 | MS.gene76038:CDS | 45.0% | |
| TCTGACACCAAAACAACCAC+CGG | + | chr1.1:70973701-70973720 | MS.gene76038:CDS | 45.0% | |
| TGACCACTGTCAGTGTCTAT+AGG | - | chr1.1:70973389-70973408 | None:intergenic | 45.0% | |
| ! | CAAGATGCTCATGTTTGCTG+TGG | - | chr1.1:70973985-70974004 | None:intergenic | 45.0% |
| ! | CATGCTTCTTGTGATGGAAG+AGG | - | chr1.1:70973349-70973368 | None:intergenic | 45.0% |
| ! | TATGGTGCCAAAACAACCAC+TGG | + | chr1.1:70973602-70973621 | MS.gene76038:CDS | 45.0% |
| ! | TCTGGTGGTGACTATGAAAC+TGG | + | chr1.1:70973530-70973549 | MS.gene76038:CDS | 45.0% |
| !! | TTAAAAATAAATTTGTAAAA+TGG | - | chr1.1:70974382-70974401 | None:intergenic | 5.0% |
| AAAACAACCACTGGCGGCTA+CGG | + | chr1.1:70973761-70973780 | MS.gene76038:CDS | 50.0% | |
| AAGACCCAGAGAATGCTCAC+AGG | + | chr1.1:70975021-70975040 | MS.gene76038:CDS | 50.0% | |
| AATGATGACCAGCCATCTGG+TGG | + | chr1.1:70973473-70973492 | MS.gene76038:CDS | 50.0% | |
| AGGCCTATAGACACTGACAG+TGG | + | chr1.1:70973383-70973402 | MS.gene76038:CDS | 50.0% | |
| ATCGTCACCATAACCACCAC+CGG | - | chr1.1:70973924-70973943 | None:intergenic | 50.0% | |
| GACTCTGACACCAAAACCAC+TGG | + | chr1.1:70973650-70973669 | MS.gene76038:CDS | 50.0% | |
| TCTGACACCAAAACCACCAC+CGG | + | chr1.1:70973902-70973921 | MS.gene76038:CDS | 50.0% | |
| TCTGACACCAAAACCACTGG+TGG | + | chr1.1:70973653-70973672 | MS.gene76038:CDS | 50.0% | |
| TGTGCCTGTGAGCATTCTCT+GGG | - | chr1.1:70975028-70975047 | None:intergenic | 50.0% | |
| TTGTGCCTGTGAGCATTCTC+TGG | - | chr1.1:70975029-70975048 | None:intergenic | 50.0% | |
| ! | TCTTGTGATGGAAGAGGCCA+CGG | - | chr1.1:70973343-70973362 | None:intergenic | 50.0% |
| !! | AAAACCACTGGTGGTGGCTA+CGG | + | chr1.1:70973662-70973681 | MS.gene76038:CDS | 50.0% |
| !! | AGCTGCTGGTGGTTTTGCTT+TGG | + | chr1.1:70974021-70974040 | MS.gene76038:CDS | 50.0% |
| ACCAAAACAACCACCGGTGG+CGG | + | chr1.1:70973707-70973726 | MS.gene76038:CDS | 55.0% | |
| AGTTGCAGAAGCAGCTGCAG+TGG | + | chr1.1:70975061-70975080 | MS.gene76038:CDS | 55.0% | |
| GACACCAAAACAACCACCGG+TGG | + | chr1.1:70973704-70973723 | MS.gene76038:CDS | 55.0% | |
| GACACCAAAACCACTGGTGG+TGG | + | chr1.1:70973656-70973675 | MS.gene76038:CDS | 55.0% | |
| GATGAAGAGAACCGTAGCCG+TGG | + | chr1.1:70973323-70973342 | MS.gene76038:CDS | 55.0% | |
| GCCAAAACAACCACTGGTGG+CGG | + | chr1.1:70973608-70973627 | MS.gene76038:CDS | 55.0% | |
| GGTGCCAAAACAACCACTGG+TGG | + | chr1.1:70973605-70973624 | MS.gene76038:CDS | 55.0% | |
| GTTGCAGAAGCAGCTGCAGT+GGG | + | chr1.1:70975062-70975081 | MS.gene76038:CDS | 55.0% | |
| TGTAACCACCACCAGATGGC+TGG | - | chr1.1:70973484-70973503 | None:intergenic | 55.0% | |
| ! | GTAGCCACCACCAGTGGTTT+TGG | - | chr1.1:70973663-70973682 | None:intergenic | 55.0% |
| !! | GGCGGATATGGTGGTGGTTA+TGG | + | chr1.1:70973725-70973744 | MS.gene76038:CDS | 55.0% |
| ACAACCACTGGAGGCGGCTA+CGG | + | chr1.1:70973863-70973882 | MS.gene76038:CDS | 60.0% | |
| ACCAAAACCACCACCGGTGG+TGG | + | chr1.1:70973908-70973927 | MS.gene76038:CDS | 60.0% | |
| ACCACCACCATATCCGCCAC+CGG | - | chr1.1:70973723-70973742 | None:intergenic | 60.0% | |
| ACCATAACCACCACCGGTGG+TGG | - | chr1.1:70973918-70973937 | None:intergenic | 60.0% | |
| CAGCTGCAGTGGGATCTGGT+GGG | + | chr1.1:70975072-70975091 | MS.gene76038:CDS | 60.0% | |
| GAAGCAGCTGCAGTGGGATC+TGG | + | chr1.1:70975068-70975087 | MS.gene76038:CDS | 60.0% | |
| GACACCAAAACCACCACCGG+TGG | + | chr1.1:70973905-70973924 | MS.gene76038:CDS | 60.0% | |
| GATGACCAGCCATCTGGTGG+TGG | + | chr1.1:70973476-70973495 | MS.gene76038:CDS | 60.0% | |
| GATGGAAGAGGCCACGGCTA+CGG | - | chr1.1:70973337-70973356 | None:intergenic | 60.0% | |
| GTCACCATAACCACCACCGG+TGG | - | chr1.1:70973921-70973940 | None:intergenic | 60.0% | |
| ! | ACCACCACCGGTGGTGGTTA+TGG | + | chr1.1:70973914-70973933 | MS.gene76038:CDS | 60.0% |
| ! | GAGTTAGGTGCTGCAGCTGC+TGG | + | chr1.1:70974007-70974026 | MS.gene76038:CDS | 60.0% |
| ! | GCCGCCACCAGTGGTTGTTT+TGG | - | chr1.1:70973612-70973631 | None:intergenic | 60.0% |
| ! | GGTGGCTACGGTGGTGGTTA+TGG | + | chr1.1:70973674-70973693 | MS.gene76038:CDS | 60.0% |
| ! | TCCGCCACCGGTGGTTGTTT+TGG | - | chr1.1:70973711-70973730 | None:intergenic | 60.0% |
| ! | TTAGGTGCTGCAGCTGCTGG+TGG | + | chr1.1:70974010-70974029 | MS.gene76038:CDS | 60.0% |
| !! | ACAACCACCGGTGGCGGATA+TGG | + | chr1.1:70973713-70973732 | MS.gene76038:CDS | 60.0% |
| !! | ACAACCACTGGTGGCGGCTA+CGG | + | chr1.1:70973614-70973633 | MS.gene76038:CDS | 60.0% |
| !! | ACCACCACCGGTGGTGGTTT+TGG | - | chr1.1:70973912-70973931 | None:intergenic | 60.0% |
| !! | TGGTGGGTTCGCCTTCCATG+AGG | + | chr1.1:70975088-70975107 | MS.gene76038:CDS | 60.0% |
| ACAACCACTGGCGGCTACGG+TGG | + | chr1.1:70973764-70973783 | MS.gene76038:CDS | 65.0% | |
| ACCACCATATCCGCCACCGG+TGG | - | chr1.1:70973720-70973739 | None:intergenic | 65.0% | |
| ACCACCGTAGCCACCACCAG+TGG | - | chr1.1:70973669-70973688 | None:intergenic | 65.0% | |
| GCAGCTGCAGTGGGATCTGG+TGG | + | chr1.1:70975071-70975090 | MS.gene76038:CDS | 65.0% | |
| ! | GGCGGCTACGGTGGTGGTTA+TGG | + | chr1.1:70973773-70973792 | MS.gene76038:CDS | 65.0% |
| !! | ACCACCGGTGGCGGATATGG+TGG | + | chr1.1:70973716-70973735 | MS.gene76038:CDS | 65.0% |
| !! | ACCACTGGTGGTGGCTACGG+TGG | + | chr1.1:70973665-70973684 | MS.gene76038:CDS | 65.0% |
| !! | ACCGGTGGCGGATATGGTGG+TGG | + | chr1.1:70973719-70973738 | MS.gene76038:CDS | 65.0% |
| !! | ACTGGTGGTGGCTACGGTGG+TGG | + | chr1.1:70973668-70973687 | MS.gene76038:CDS | 65.0% |
| !! | GGCGGCTACGGTGGTGGATA+TGG | + | chr1.1:70973875-70973894 | MS.gene76038:CDS | 65.0% |
| ACCACCACCGTAGCCGCCAG+TGG | - | chr1.1:70973771-70973790 | None:intergenic | 70.0% | |
| ACCACCGTAGCCGCCACCAG+TGG | - | chr1.1:70973819-70973838 | None:intergenic | 70.0% | |
| ACCACCGTAGCCGCCTCCAG+TGG | - | chr1.1:70973870-70973889 | None:intergenic | 70.0% | |
| ACCACTGGAGGCGGCTACGG+TGG | + | chr1.1:70973866-70973885 | MS.gene76038:CDS | 70.0% | |
| ACCACTGGCGGCTACGGTGG+TGG | + | chr1.1:70973767-70973786 | MS.gene76038:CDS | 70.0% | |
| ACTGGAGGCGGCTACGGTGG+TGG | + | chr1.1:70973869-70973888 | MS.gene76038:CDS | 70.0% | |
| GGCGGCTACGGCGGTGGTTA+TGG | + | chr1.1:70973626-70973645 | MS.gene76038:CDS | 70.0% | |
| !! | ACCACTGGTGGCGGCTACGG+CGG | + | chr1.1:70973617-70973636 | MS.gene76038:CDS | 70.0% |
| !! | ACCACTGGTGGCGGCTACGG+TGG | + | chr1.1:70973617-70973636 | MS.gene76038:CDS | 70.0% |
| !! | ACTGGTGGCGGCTACGGTGG+TGG | + | chr1.1:70973818-70973837 | MS.gene76038:CDS | 70.0% |
| ACCGCCGTAGCCGCCACCAG+TGG | - | chr1.1:70973621-70973640 | None:intergenic | 75.0% | |
| !! | ACTGGTGGCGGCTACGGCGG+TGG | + | chr1.1:70973620-70973639 | MS.gene76038:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70973317 | 70975184 | 70973317 | ID=MS.gene76038 |
| chr1.1 | mRNA | 70973317 | 70975184 | 70973317 | ID=MS.gene76038.t1;Parent=MS.gene76038 |
| chr1.1 | exon | 70973317 | 70974042 | 70973317 | ID=MS.gene76038.t1.exon1;Parent=MS.gene76038.t1 |
| chr1.1 | CDS | 70973317 | 70974042 | 70973317 | ID=cds.MS.gene76038.t1;Parent=MS.gene76038.t1 |
| chr1.1 | exon | 70974999 | 70975184 | 70974999 | ID=MS.gene76038.t1.exon2;Parent=MS.gene76038.t1 |
| chr1.1 | CDS | 70974999 | 70975184 | 70974999 | ID=cds.MS.gene76038.t1;Parent=MS.gene76038.t1 |
| Gene Sequence |
| Protein sequence |
