Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80025.t1 | RHN74177.1 | 83.4 | 537 | 87 | 2 | 1 | 535 | 1 | 537 | 2.60E-184 | 655.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80025.t1 | Q9LI74 | 28.7 | 342 | 211 | 6 | 16 | 332 | 91 | 424 | 1.7e-19 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80025.t1 | A0A396JGG7 | 83.4 | 537 | 87 | 2 | 1 | 535 | 1 | 537 | 1.9e-184 | 655.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene80025 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene049150 | MS.gene80025 | 0.84804 | 7.90E-60 | -1.69E-46 |
| MS.gene049151 | MS.gene80025 | 0.840186 | 1.01E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene80025 | 0.84464 | 6.67E-59 | -1.69E-46 |
| MS.gene049346 | MS.gene80025 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene80025 | 0.802733 | 4.88E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene80025 | 0.834402 | 3.06E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene80025 | 0.831977 | 1.23E-55 | -1.69E-46 |
| MS.gene049915 | MS.gene80025 | 0.837925 | 3.90E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene80025 | 0.821262 | 4.43E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene80025 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene80025 | 0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene80025 | -0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene80025 | 0.839044 | 2.01E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene80025 | 0.841367 | 4.96E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene80025 | 0.83514 | 2.00E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene80025 | 0.828768 | 7.48E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene80025 | 0.80449 | 2.11E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene80025 | 0.857065 | 2.10E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene80025 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene053184 | MS.gene80025 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene80025 | 0.837185 | 6.04E-57 | -1.69E-46 |
| MS.gene054184 | MS.gene80025 | 0.852654 | 4.01E-61 | -1.69E-46 |
| MS.gene054185 | MS.gene80025 | 0.856862 | 2.41E-62 | -1.69E-46 |
| MS.gene054349 | MS.gene80025 | 0.805902 | 1.07E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene80025 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene80025 | 0.829038 | 6.44E-55 | -1.69E-46 |
| MS.gene056447 | MS.gene80025 | 0.807404 | 5.14E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene80025 | 0.833249 | 5.95E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene80025 | 0.803872 | 2.83E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene80025 | 0.819525 | 1.11E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene80025 | 0.81185 | 5.70E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene80025 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene057750 | MS.gene80025 | 0.843164 | 1.66E-58 | -1.69E-46 |
| MS.gene057754 | MS.gene80025 | 0.853352 | 2.53E-61 | -1.69E-46 |
| MS.gene058002 | MS.gene80025 | 0.829852 | 4.08E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene80025 | 0.830386 | 3.02E-55 | -1.69E-46 |
| MS.gene058142 | MS.gene80025 | 0.821873 | 3.20E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene80025 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene80025 | 0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene80025 | 0.814031 | 1.89E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene80025 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene05907 | MS.gene80025 | 0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene80025 | 0.815673 | 8.20E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene80025 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene80025 | 0.849427 | 3.26E-60 | -1.69E-46 |
| MS.gene059421 | MS.gene80025 | 0.860979 | 1.42E-63 | -1.69E-46 |
| MS.gene05984 | MS.gene80025 | 0.845281 | 4.48E-59 | -1.69E-46 |
| MS.gene060476 | MS.gene80025 | 0.810011 | 1.43E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene80025 | 0.825487 | 4.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80025.t1 | MTR_0170s0030 | 89.362 | 517 | 53 | 2 | 4 | 518 | 31 | 547 | 0.0 | 877 |
| MS.gene80025.t1 | MTR_5g053270 | 36.254 | 331 | 189 | 4 | 56 | 367 | 126 | 453 | 2.40e-41 | 159 |
| MS.gene80025.t1 | MTR_1g093850 | 31.214 | 346 | 199 | 6 | 56 | 367 | 133 | 473 | 1.83e-32 | 133 |
| MS.gene80025.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 113 | 458 | 1.58e-14 | 76.6 |
| MS.gene80025.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 72 | 417 | 2.16e-14 | 76.3 |
| MS.gene80025.t1 | MTR_8g014900 | 22.630 | 327 | 233 | 5 | 61 | 367 | 144 | 470 | 2.94e-14 | 75.9 |
| MS.gene80025.t1 | MTR_1g016290 | 40.426 | 94 | 51 | 1 | 194 | 282 | 207 | 300 | 2.51e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80025.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.61e-41 | 160 |
| MS.gene80025.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.61e-41 | 160 |
| MS.gene80025.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.61e-41 | 160 |
| MS.gene80025.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.61e-41 | 160 |
| MS.gene80025.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 117 | 558 | 1.94e-41 | 160 |
| MS.gene80025.t1 | AT3G25690 | 29.973 | 367 | 214 | 8 | 121 | 448 | 53 | 415 | 1.37e-30 | 127 |
| MS.gene80025.t1 | AT1G52080 | 27.157 | 313 | 213 | 6 | 50 | 355 | 133 | 437 | 6.08e-16 | 81.3 |
| MS.gene80025.t1 | AT1G52080 | 27.157 | 313 | 213 | 6 | 50 | 355 | 133 | 437 | 6.08e-16 | 81.3 |
Find 0 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTATAAATGAGA+TGG | - | 16768:3523-3542 | MS.gene80025:CDS | 10.0% |
| !!! | ATAATTTTAATAATACAAGA+TGG | + | 16768:3877-3896 | MS.gene80025:intergenic | 10.0% |
| !!! | CTAAATTTTGTTAAAATAAT+AGG | - | 16768:4335-4354 | MS.gene80025:intron | 10.0% |
| !! | AACAAAAAATAACACATAAA+AGG | + | 16768:3114-3133 | MS.gene80025:intergenic | 15.0% |
| !! | ATTCTTATGTTCATTAATAT+GGG | - | 16768:3830-3849 | MS.gene80025:CDS | 15.0% |
| !! | TACCTTAAATTTATTGTTTA+AGG | - | 16768:4394-4413 | MS.gene80025:intron | 15.0% |
| !! | TATTAAAGAAAAAATAGAAG+AGG | - | 16768:3469-3488 | MS.gene80025:CDS | 15.0% |
| !! | TATTCTTATGTTCATTAATA+TGG | - | 16768:3829-3848 | MS.gene80025:CDS | 15.0% |
| !!! | AAGTAATGTTGATTAATTAT+AGG | + | 16768:4296-4315 | MS.gene80025:intergenic | 15.0% |
| !!! | TAAAGACAAATCAATTTTTT+GGG | + | 16768:3169-3188 | MS.gene80025:intergenic | 15.0% |
| !!! | TAATAAAAAGCATAATAGAA+AGG | - | 16768:4637-4656 | MS.gene80025:CDS | 15.0% |
| !!! | TTAAAGACAAATCAATTTTT+TGG | + | 16768:3170-3189 | MS.gene80025:intergenic | 15.0% |
| !! | AATCAACATTACTTAAGTTA+TGG | - | 16768:4302-4321 | MS.gene80025:intron | 20.0% |
| !! | AATCCTACAAAAAAAATCAT+TGG | - | 16768:4245-4264 | MS.gene80025:intron | 20.0% |
| !! | AGCCTTAAACAATAAATTTA+AGG | + | 16768:4399-4418 | MS.gene80025:intergenic | 20.0% |
| !! | ATCCTACAAAAAAAATCATT+GGG | - | 16768:4246-4265 | MS.gene80025:intron | 20.0% |
| !! | TGCTTAATAAATTGAAAAGA+TGG | - | 16768:4852-4871 | MS.gene80025:CDS | 20.0% |
| !! | TTGTTAAAATAATAGGTAGT+AGG | - | 16768:4342-4361 | MS.gene80025:intron | 20.0% |
| !! | TTTCAATTTATTAAGCAAAC+TGG | + | 16768:4849-4868 | MS.gene80025:intergenic | 20.0% |
| !!! | AAACAATAAATTTAAGGTAG+AGG | + | 16768:4393-4412 | MS.gene80025:intergenic | 20.0% |
| ! | AAATTGGTTATTCAGATGAT+AGG | - | 16768:5299-5318 | MS.gene80025:intron | 25.0% |
| ! | AATACAAAATTACAAGCAGA+GGG | - | 16768:3295-3314 | MS.gene80025:CDS | 25.0% |
| ! | AATTGAAGGTTGTGAAAATA+TGG | - | 16768:3238-3257 | MS.gene80025:CDS | 25.0% |
| ! | ACATTCAACACTAATCTATT+GGG | - | 16768:3954-3973 | MS.gene80025:intron | 25.0% |
| ! | AGAAAAGAGTTTATAAAGAG+TGG | + | 16768:4108-4127 | MS.gene80025:intergenic | 25.0% |
| ! | ATATAAGAGTTTATCCATTC+GGG | + | 16768:4008-4027 | MS.gene80025:intergenic | 25.0% |
| ! | ATTCAATAAGTTTCCTTTCA+AGG | + | 16768:3328-3347 | MS.gene80025:intergenic | 25.0% |
| ! | ATTTGCTCATTTCATCATAT+TGG | + | 16768:5204-5223 | MS.gene80025:intergenic | 25.0% |
| ! | GAAAGTAAGAAGAATATGAA+TGG | - | 16768:3545-3564 | MS.gene80025:CDS | 25.0% |
| ! | GATATAAGAGTTTATCCATT+CGG | + | 16768:4009-4028 | MS.gene80025:intergenic | 25.0% |
| ! | TAATACAAAATTACAAGCAG+AGG | - | 16768:3294-3313 | MS.gene80025:CDS | 25.0% |
| ! | TATTGAATTGAATAGACTGA+AGG | - | 16768:3340-3359 | MS.gene80025:CDS | 25.0% |
| !! | TATGGATTATATCACTGAAA+AGG | - | 16768:3256-3275 | MS.gene80025:CDS | 25.0% |
| !!! | TGCTTGATAATTTTTTCTAC+AGG | - | 16768:4448-4467 | MS.gene80025:intron | 25.0% |
| AATACAACCAGAAACTATGT+TGG | - | 16768:4213-4232 | MS.gene80025:intron | 30.0% | |
| AATCAAATCTATCAAAGCCA+AGG | - | 16768:4972-4991 | MS.gene80025:CDS | 30.0% | |
| ATGCTAAAAGGACTAACAAA+AGG | + | 16768:5363-5382 | MS.gene80025:intergenic | 30.0% | |
| ATGTTCATTAATATGGGACT+TGG | - | 16768:3836-3855 | MS.gene80025:CDS | 30.0% | |
| ATTGAATTGCCACAAATTGA+AGG | - | 16768:3224-3243 | MS.gene80025:CDS | 30.0% | |
| CACATTCAACACTAATCTAT+TGG | - | 16768:3953-3972 | MS.gene80025:intron | 30.0% | |
| GAATTCAACTATTACATGCT+TGG | - | 16768:5153-5172 | MS.gene80025:CDS | 30.0% | |
| GAGCAAATCATATGAAAATG+TGG | - | 16768:5216-5235 | MS.gene80025:intron | 30.0% | |
| GGTTTCTCTAGATTCATAAA+TGG | + | 16768:5019-5038 | MS.gene80025:intergenic | 30.0% | |
| TACCATATTAAAAGCAGACT+AGG | + | 16768:3907-3926 | MS.gene80025:intergenic | 30.0% | |
| TGATCCTGAAATATGCTAAA+AGG | + | 16768:5375-5394 | MS.gene80025:intergenic | 30.0% | |
| TGCTCACAAAACAATCATAT+TGG | + | 16768:4168-4187 | MS.gene80025:intergenic | 30.0% | |
| TTATGCTAGTGATGTAATAC+AGG | - | 16768:3086-3105 | MS.gene80025:CDS | 30.0% | |
| ! | AACAAGTTGAAATATTGCAG+AGG | - | 16768:4537-4556 | MS.gene80025:intron | 30.0% |
| ! | AGATTAGTGTTGAATGTGAA+AGG | + | 16768:3951-3970 | MS.gene80025:intergenic | 30.0% |
| ! | CACTTATTTCTTCTTGTATC+TGG | + | 16768:4487-4506 | MS.gene80025:intergenic | 30.0% |
| ! | GATTAGTGTTGAATGTGAAA+GGG | + | 16768:3950-3969 | MS.gene80025:intergenic | 30.0% |
| ! | TAGTCCTTTTAGCATATTTC+AGG | - | 16768:5368-5387 | MS.gene80025:CDS | 30.0% |
| ! | TTTTCACAACCTTCAATTTG+TGG | + | 16768:3236-3255 | MS.gene80025:intergenic | 30.0% |
| !! | AACCTAGTCTGCTTTTAATA+TGG | - | 16768:3902-3921 | MS.gene80025:CDS | 30.0% |
| !! | AGATAGAGCATTACAAGTTT+TGG | - | 16768:3673-3692 | MS.gene80025:CDS | 30.0% |
| !! | GATTTTGAGGAAATGGAAAA+TGG | - | 16768:3057-3076 | MS.gene80025:CDS | 30.0% |
| !! | TCTGCTTTTAATATGGTACT+TGG | - | 16768:3909-3928 | MS.gene80025:CDS | 30.0% |
| !! | TGAACATGATTTTGAGGAAA+TGG | - | 16768:3050-3069 | MS.gene80025:CDS | 30.0% |
| !!! | CACCCAATGATTTTTTTTGT+AGG | + | 16768:4251-4270 | MS.gene80025:intergenic | 30.0% |
| !!! | TACAAGTTTTGGAAATGAAG+AGG | - | 16768:3684-3703 | MS.gene80025:CDS | 30.0% |
| AACGAGAAGAATTTGCGAAA+GGG | - | 16768:4893-4912 | MS.gene80025:CDS | 35.0% | |
| AAGAAACAATTGCTTCCCTT+CGG | - | 16768:3432-3451 | MS.gene80025:CDS | 35.0% | |
| AAGAGCTTGAATTGGAAAAG+AGG | - | 16768:3714-3733 | MS.gene80025:CDS | 35.0% | |
| ACTACTAGAAGAACTTTCGA+GGG | + | 16768:4804-4823 | MS.gene80025:intergenic | 35.0% | |
| ACTAGCAAGAAACAAATCAG+AGG | - | 16768:3763-3782 | MS.gene80025:CDS | 35.0% | |
| AGAGCTTGAATTGGAAAAGA+GGG | - | 16768:3715-3734 | MS.gene80025:CDS | 35.0% | |
| AGCAATAGCAAGGATCAAAT+TGG | - | 16768:5283-5302 | MS.gene80025:intron | 35.0% | |
| AGCATATGAAAAGCCATCTT+TGG | + | 16768:4595-4614 | MS.gene80025:intergenic | 35.0% | |
| CAATTCTTTGCCTGAAATCT+TGG | + | 16768:4681-4700 | MS.gene80025:intergenic | 35.0% | |
| CTTGGAGTTGAAGAAACAAA+AGG | - | 16768:5171-5190 | MS.gene80025:CDS | 35.0% | |
| GAATAAAGGTAGCAATAGCA+AGG | - | 16768:5273-5292 | MS.gene80025:intron | 35.0% | |
| GACGAATTAGCGAAGTATAA+CGG | - | 16768:3611-3630 | MS.gene80025:CDS | 35.0% | |
| GAGAAACAAAGAGCTTGAAT+TGG | - | 16768:3706-3725 | MS.gene80025:CDS | 35.0% | |
| GATTCCTCTTCAGAGAATAA+AGG | - | 16768:5259-5278 | MS.gene80025:intron | 35.0% | |
| TGTTATGCAAGAAGAAGTTG+AGG | - | 16768:5096-5115 | MS.gene80025:CDS | 35.0% | |
| TTCCCAACTGAAAATGCAAT+TGG | - | 16768:3379-3398 | MS.gene80025:CDS | 35.0% | |
| ! | AGACTCTGAACATGATTTTG+AGG | - | 16768:3044-3063 | MS.gene80025:CDS | 35.0% |
| ! | CTCCAATTGCATTTTCAGTT+GGG | + | 16768:3384-3403 | MS.gene80025:intergenic | 35.0% |
| ! | GATGGCTTTTCATATGCTTA+AGG | - | 16768:4597-4616 | MS.gene80025:intron | 35.0% |
| ! | TCTCCAATTGCATTTTCAGT+TGG | + | 16768:3385-3404 | MS.gene80025:intergenic | 35.0% |
| ! | TGTTTTGTGAGCAAAGTGAA+AGG | - | 16768:4175-4194 | MS.gene80025:intron | 35.0% |
| !!! | AATTTTGGTTTCGAACCGAA+GGG | + | 16768:3450-3469 | MS.gene80025:intergenic | 35.0% |
| !!! | TAATTTTGGTTTCGAACCGA+AGG | + | 16768:3451-3470 | MS.gene80025:intergenic | 35.0% |
| AAGAGCTTGTGTACCAAAGA+TGG | - | 16768:4579-4598 | MS.gene80025:intron | 40.0% | |
| ACTGGCACATCTAATCTAGT+CGG | + | 16768:4084-4103 | MS.gene80025:intergenic | 40.0% | |
| AGAGGGAAATAAGCCTTGAA+AGG | - | 16768:3312-3331 | MS.gene80025:CDS | 40.0% | |
| CAACGAGAAGAATTTGCGAA+AGG | - | 16768:4892-4911 | MS.gene80025:CDS | 40.0% | |
| CCATGAACCAACATAGTTTC+TGG | + | 16768:4223-4242 | MS.gene80025:intergenic | 40.0% | |
| GAATTGGAAAAGAGGGAAGT+AGG | - | 16768:3722-3741 | MS.gene80025:CDS | 40.0% | |
| GACACTCTCTTCAATCTTGT+CGG | + | 16768:5043-5062 | MS.gene80025:intergenic | 40.0% | |
| GACTACTAGAAGAACTTTCG+AGG | + | 16768:4805-4824 | MS.gene80025:intergenic | 40.0% | |
| GAGTTTATAAAGAGTGGCAC+TGG | + | 16768:4102-4121 | MS.gene80025:intergenic | 40.0% | |
| TCAACATCTGATCGTTGACA+TGG | + | 16768:3574-3593 | MS.gene80025:intergenic | 40.0% | |
| TGATAGGATTAAAAGCCTGC+TGG | - | 16768:5315-5334 | MS.gene80025:CDS | 40.0% | |
| TGTCTCTTCGAATGCTACAT+TGG | - | 16768:4751-4770 | MS.gene80025:CDS | 40.0% | |
| ! | ACGTAGGTTTTCAATGTCGA+TGG | - | 16768:4946-4965 | MS.gene80025:CDS | 40.0% |
| ! | GCTACCTTTATTCTCTGAAG+AGG | + | 16768:5266-5285 | MS.gene80025:intergenic | 40.0% |
| !! | CCAGAAACTATGTTGGTTCA+TGG | - | 16768:4220-4239 | MS.gene80025:intron | 40.0% |
| !! | GAGAGTGTCTTTCAGTGATT+CGG | - | 16768:5054-5073 | MS.gene80025:CDS | 40.0% |
| !! | TCACTTCTTTTGCTTGCTGA+AGG | + | 16768:3018-3037 | MS.gene80025:intergenic | 40.0% |
| AAGCCAAGGAAAAGTTGTGC+TGG | - | 16768:4986-5005 | MS.gene80025:CDS | 45.0% | |
| AATCTATTGGGTTTAGCGCG+TGG | - | 16768:3966-3985 | MS.gene80025:intron | 45.0% | |
| ACTAGAAGAACTTTCGAGGG+TGG | + | 16768:4801-4820 | MS.gene80025:intergenic | 45.0% | |
| ACTCTCTTCAATCTTGTCGG+TGG | + | 16768:5040-5059 | MS.gene80025:intergenic | 45.0% | |
| CAAGACTGCACCAAGATTTC+AGG | - | 16768:4668-4687 | MS.gene80025:CDS | 45.0% | |
| GAAAACCTACGTATCAGTCC+AGG | + | 16768:4938-4957 | MS.gene80025:intergenic | 45.0% | |
| GAGAAGAATTTGCGAAAGGG+TGG | - | 16768:4896-4915 | MS.gene80025:CDS | 45.0% | |
| GATTTCTTGGATGACCCGAA+TGG | - | 16768:3991-4010 | MS.gene80025:intron | 45.0% | |
| GCAGAGGAACAGATTTGACA+TGG | - | 16768:4553-4572 | MS.gene80025:intron | 45.0% | |
| ! | TTAGCGCGTGGTTGATTTCT+TGG | - | 16768:3978-3997 | MS.gene80025:intron | 45.0% |
| !! | GTATAACGGTGCTACTGCTA+TGG | - | 16768:3625-3644 | MS.gene80025:CDS | 45.0% |
| !!! | TATTTTTTCTTTAATAATTT+TGG | + | 16768:3465-3484 | MS.gene80025:intergenic | 5.0% |
| CCAAGGAAAAGTTGTGCTGG+TGG | - | 16768:4989-5008 | MS.gene80025:CDS | 50.0% | |
| GGAAATAGACCAAGCAGACC+TGG | - | 16768:4917-4936 | MS.gene80025:CDS | 50.0% | |
| ! | CCACCAGCACAACTTTTCCT+TGG | + | 16768:4992-5011 | MS.gene80025:intergenic | 50.0% |
| ! | CTTGGTGCAGTCTTGTCTTG+TGG | + | 16768:4663-4682 | MS.gene80025:intergenic | 50.0% |
| ATACTAGCAGCTGCACCAGC+AGG | + | 16768:5333-5352 | MS.gene80025:intergenic | 55.0% | |
| CGTATCAGTCCAGGTCTGCT+TGG | + | 16768:4929-4948 | MS.gene80025:intergenic | 55.0% | |
| GCAGACCTGGACTGATACGT+AGG | - | 16768:4930-4949 | MS.gene80025:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16768 | gene | 3012 | 5399 | 3012 | ID=MS.gene80025 |
| 16768 | mRNA | 3012 | 5399 | 3012 | ID=MS.gene80025.t1;Parent=MS.gene80025 |
| 16768 | exon | 5304 | 5399 | 5304 | ID=MS.gene80025.t1.exon1;Parent=MS.gene80025.t1 |
| 16768 | CDS | 5304 | 5399 | 5304 | ID=cds.MS.gene80025.t1;Parent=MS.gene80025.t1 |
| 16768 | exon | 4627 | 5211 | 4627 | ID=MS.gene80025.t1.exon2;Parent=MS.gene80025.t1 |
| 16768 | CDS | 4627 | 5211 | 4627 | ID=cds.MS.gene80025.t1;Parent=MS.gene80025.t1 |
| 16768 | exon | 3012 | 3941 | 3012 | ID=MS.gene80025.t1.exon3;Parent=MS.gene80025.t1 |
| 16768 | CDS | 3012 | 3941 | 3012 | ID=cds.MS.gene80025.t1;Parent=MS.gene80025.t1 |
| Gene Sequence |
| Protein sequence |
