AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83774


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83774.t1 MTR_4g102460 65.269 167 55 2 1 166 1 165 1.04e-56 202
MS.gene83774.t1 MTR_8g054490 94.286 105 6 0 1 105 1 105 1.29e-51 179
MS.gene83774.t1 MTR_7g105270 69.799 149 45 0 18 166 1 149 8.36e-51 185
MS.gene83774.t1 MTR_7g034745 94.681 94 5 0 1 94 1 94 1.83e-47 163
MS.gene83774.t1 MTR_7g056297 67.669 133 43 0 18 150 1 133 1.65e-42 160
MS.gene83774.t1 MTR_1g105095 63.107 103 38 0 27 129 76 178 2.21e-32 124
MS.gene83774.t1 MTR_6g045307 24.740 481 310 13 266 721 143 596 5.84e-31 130
MS.gene83774.t1 MTR_1g050845 29.592 294 177 9 433 721 453 721 1.45e-23 107
MS.gene83774.t1 MTR_0045s0120 67.416 89 29 0 18 106 1 89 6.00e-22 91.7
MS.gene83774.t1 MTR_1g052140 29.304 273 124 8 261 500 98 334 1.18e-20 97.4
MS.gene83774.t1 MTR_1361s0010 72.414 58 16 0 93 150 1 58 3.31e-20 91.3
MS.gene83774.t1 MTR_7g060240 56.311 103 43 2 1 102 1 102 5.75e-20 85.9
MS.gene83774.t1 MTR_2g076860 24.479 192 102 1 42 233 72 220 1.35e-13 71.2
MS.gene83774.t1 MTR_0003s0410 41.935 93 53 1 261 353 672 763 9.08e-13 72.4
MS.gene83774.t1 MTR_6g060120 60.000 75 28 2 1 74 1 74 1.63e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCTGTTAACAGGATTT+TGG 0.128661 3.2:+17101863 MS.gene83774:CDS
CTCTACGAGAAGCCATTATT+TGG 0.166385 3.2:+17101337 MS.gene83774:CDS
AAGGAAATTGTTCGTCTTCA+TGG 0.230556 3.2:+17101711 MS.gene83774:CDS
AGACAACAAATCTTTAAAAT+TGG 0.231722 3.2:+17102182 MS.gene83774:CDS
GGAGGATTAGCAGGTCATTT+TGG 0.239147 3.2:+17101372 MS.gene83774:CDS
AACTTGGCATTTGGTTGTTT+TGG 0.251939 3.2:-17102242 None:intergenic
AATCTTTAAAATTGGAGATT+TGG 0.253491 3.2:+17102190 MS.gene83774:CDS
AGTTGTGACGCTTCCAATTC+AGG 0.261063 3.2:+17100817 MS.gene83774:CDS
CTTCAGTTTGTCCATCTGTC+TGG 0.267583 3.2:-17101845 None:intergenic
TAAATGTTTCTCCACTCTTA+TGG 0.272967 3.2:-17098880 None:intergenic
TACCCAAGAAGCATTCTTAC+AGG 0.289115 3.2:+17098901 MS.gene83774:CDS
AGTGTTTGGTCGTTTCTTCT+TGG 0.293836 3.2:-17098201 None:intergenic
CTTGGTGACAACTTGGCATT+TGG 0.298252 3.2:-17102251 None:intergenic
GACGCTTCCAATTCAGGAAT+TGG 0.321227 3.2:+17100823 MS.gene83774:CDS
TCTCTGAATGATTGTCTTTG+TGG 0.337173 3.2:-17098372 None:intergenic
CAAAGACCCGTTCAACAGTT+TGG 0.339906 3.2:-17098464 None:intergenic
ATTCCTGTAAGAATGCTTCT+TGG 0.340428 3.2:-17098904 None:intergenic
CTCTAGGATTACTATAAATA+AGG 0.341795 3.2:+17102624 MS.gene83774:intron
TGTAGCTTTCCTTCAAAATC+AGG 0.348866 3.2:-17098417 None:intergenic
TTCAGTTTGTCCATCTGTCT+GGG 0.358457 3.2:-17101844 None:intergenic
TTTGAATATCTCTAAGTGTT+TGG 0.372498 3.2:-17098215 None:intergenic
ATCATGGGCTTCCCAAATAA+TGG 0.381536 3.2:-17101349 None:intergenic
AACCGCGCCAATTCCTGAAT+TGG 0.382822 3.2:-17100830 None:intergenic
GACAAACTGAAGCTGTTAAC+AGG 0.383273 3.2:+17101856 MS.gene83774:CDS
CAGTTCAACTCCAACAATAC+TGG 0.388842 3.2:+17098832 MS.gene83774:CDS
GGCATAAAATTCTTTATCAT+AGG 0.389535 3.2:-17100923 None:intergenic
CCGCTTACAGATTGCATAAA+GGG 0.395776 3.2:+17100682 MS.gene83774:intron
CCCGCTTACAGATTGCATAA+AGG 0.395951 3.2:+17100681 MS.gene83774:intron
TTTGTGCTTGCTCGGTCCAT+TGG 0.405567 3.2:-17100714 None:intergenic
AAATGCACAACAAGCACAAT+TGG 0.413256 3.2:+17098281 MS.gene83774:CDS
AACCTACTTCGGAGCTTTAT+CGG 0.415868 3.2:+17101888 MS.gene83774:CDS
CGTCTAATGTCCAGTATTGT+TGG 0.417557 3.2:-17098842 None:intergenic
AATTCAACTAATCAAGCTAC+TGG 0.420334 3.2:+17101966 MS.gene83774:CDS
TTACAGTTTCTTGTAACTGT+TGG 0.421464 3.2:-17098260 None:intergenic
AGTACCCATCTTCCTCCATA+AGG 0.423435 3.2:-17101793 None:intergenic
TTCCTGTAAGAATGCTTCTT+GGG 0.424057 3.2:-17098903 None:intergenic
TTAAAATTGGAGATTTGGTA+TGG 0.425994 3.2:+17102195 MS.gene83774:CDS
TCCGTTCTTACTAAAACATA+AGG 0.427155 3.2:+17101092 MS.gene83774:CDS
CAGTATTGTTGGAGTTGAAC+TGG 0.432608 3.2:-17098831 None:intergenic
CACTGATTCGCAATCCTCTC+AGG 0.433846 3.2:+17101254 MS.gene83774:CDS
TCTACGAGAAGCCATTATTT+GGG 0.435089 3.2:+17101338 MS.gene83774:CDS
AGTTGCTGACTTATACTTCA+AGG 0.436251 3.2:+17101692 MS.gene83774:CDS
ACTATGCAAATGAAAGTCAT+TGG 0.441211 3.2:+17101171 MS.gene83774:CDS
TGAAGAAGCATGCTTCCATT+TGG 0.441960 3.2:+17098538 MS.gene83774:CDS
ATCCAGATGAGTTCGTTGAT+TGG 0.442139 3.2:+17098439 MS.gene83774:CDS
GTTTGGTCGTTTCTTCTTGG+AGG 0.442999 3.2:-17098198 None:intergenic
AGCCAATCAACGAACTCATC+TGG 0.446536 3.2:-17098441 None:intergenic
TTGGCTCCAAACTGTTGAAC+GGG 0.451354 3.2:+17098458 MS.gene83774:CDS
AATGACTTTCATTTGCATAG+TGG 0.452688 3.2:-17101169 None:intergenic
TTCGAACACCTGGTCAAAGT+TGG 0.453463 3.2:-17100791 None:intergenic
AAAACAATGGGATCTCATCT+TGG 0.455984 3.2:+17101920 MS.gene83774:CDS
ATCAGCTCTTGGTGACAACT+TGG 0.464395 3.2:-17102258 None:intergenic
GAGAACCTTATGGAGGAAGA+TGG 0.467806 3.2:+17101788 MS.gene83774:CDS
TTGAAAGGACCATCAGCTCT+TGG 0.469552 3.2:-17102269 None:intergenic
TCATTTGCATAGTGGCAAGT+AGG 0.470951 3.2:-17101161 None:intergenic
AACGTCTGATTGCATGTGTT+GGG 0.474342 3.2:-17098307 None:intergenic
GTTCCGTATGCTACCTCAAA+AGG 0.478007 3.2:-17101996 None:intergenic
ACAATCGCTCGTTACCTTGG+TGG 0.488980 3.2:+17098786 MS.gene83774:CDS
CATTTGCATAGTGGCAAGTA+GGG 0.490498 3.2:-17101160 None:intergenic
TACTGATGTTTATCTGATGA+TGG 0.491367 3.2:-17102047 None:intergenic
GCCCATGATGGAGGATTAGC+AGG 0.491823 3.2:+17101363 MS.gene83774:CDS
TTGTCCGAGCCTTGCAACAT+TGG 0.495282 3.2:+17100947 MS.gene83774:CDS
TCGAACACCTGGTCAAAGTT+GGG 0.496804 3.2:-17100790 None:intergenic
TTGTTGCAGATGCTCTTAGC+AGG 0.500657 3.2:+17101130 MS.gene83774:CDS
CAACGTCTGATTGCATGTGT+TGG 0.501216 3.2:-17098308 None:intergenic
GACCTGCTAATCCTCCATCA+TGG 0.508910 3.2:-17101365 None:intergenic
AATCAATGACAATGCTTACA+AGG 0.509061 3.2:+17102304 MS.gene83774:CDS
CAAACAATCGCTCGTTACCT+TGG 0.510512 3.2:+17098783 MS.gene83774:CDS
AACATCTCTATCAGAAGTGA+TGG 0.512734 3.2:-17101745 None:intergenic
GACTCCAATGTTGCAAGGCT+CGG 0.513210 3.2:-17100951 None:intergenic
AGAAGCATGCTTCCATTTGG+TGG 0.517055 3.2:+17098541 MS.gene83774:CDS
AACACTTAGAGATATTCAAA+TGG 0.522436 3.2:+17098218 MS.gene83774:CDS
TCAGTTTGTCCATCTGTCTG+GGG 0.535123 3.2:-17101843 None:intergenic
AGCCCTTCCCAACTTTGACC+AGG 0.535813 3.2:+17100783 MS.gene83774:CDS
ATGTTGCAAGGCTCGGACAA+TGG 0.549135 3.2:-17100944 None:intergenic
ACCTGCTAATCCTCCATCAT+GGG 0.552793 3.2:-17101364 None:intergenic
TCAATCGCAGACATGCCGCT+TGG 0.555509 3.2:+17101049 MS.gene83774:CDS
CACAACTTACTTCGAACACC+TGG 0.555960 3.2:-17100801 None:intergenic
ATTATTTGGGAAGCCCATGA+TGG 0.557585 3.2:+17101351 MS.gene83774:CDS
GAAGTGCGACATTCATGAAA+GGG 0.562630 3.2:+17098755 MS.gene83774:CDS
CAGTTTGTCCATCTGTCTGG+GGG 0.573970 3.2:-17101842 None:intergenic
GAAGCATGCTTCCATTTGGT+GGG 0.576938 3.2:+17098542 MS.gene83774:CDS
ACACCTGGTCAAAGTTGGGA+AGG 0.579818 3.2:-17100786 None:intergenic
ATTGGCTCCAAACTGTTGAA+CGG 0.580900 3.2:+17098457 MS.gene83774:CDS
TACCGATAAAGCTCCGAAGT+AGG 0.583170 3.2:-17101890 None:intergenic
AGAGCACTGAGGAATACATA+AGG 0.585072 3.2:-17101316 None:intergenic
TGAAGTGCGACATTCATGAA+AGG 0.588057 3.2:+17098754 MS.gene83774:CDS
ATTCAGAGACAACGACATCA+AGG 0.588760 3.2:+17098386 MS.gene83774:CDS
AAAACAAAGCGAGCCCGTGA+AGG 0.589611 3.2:+17098573 MS.gene83774:CDS
TTTAGTGAAAAGCTCAACAA+TGG 0.590823 3.2:+17100883 MS.gene83774:CDS
AAGTTGTCACCAAGAGCTGA+TGG 0.598597 3.2:+17102260 MS.gene83774:CDS
TATTCGTTTAGCCATAAGAG+TGG 0.600070 3.2:+17098869 MS.gene83774:CDS
AGAACCTTATGGAGGAAGAT+GGG 0.600585 3.2:+17101789 MS.gene83774:CDS
CTGAGAGGATTGCGAATCAG+TGG 0.600915 3.2:-17101253 None:intergenic
ATTTGGGAAGCCCATGATGG+AGG 0.604783 3.2:+17101354 MS.gene83774:CDS
CATTGGATTTGAGACAGTCA+AGG 0.605582 3.2:+17101188 MS.gene83774:CDS
TTCTTACTAAAACATAAGGC+GGG 0.617806 3.2:+17101096 MS.gene83774:CDS
TGCATGAACAAGTTCGCCAA+CGG 0.617808 3.2:+17102111 MS.gene83774:CDS
GGCGCGGTTCTATGTCAAGA+AGG 0.618948 3.2:+17100844 MS.gene83774:CDS
TTATCTTGATAATAATGAGA+AGG 0.621198 3.2:-17098654 None:intergenic
CACCTGGTCAAAGTTGGGAA+GGG 0.621586 3.2:-17100785 None:intergenic
TAAAGGGAGATCAATTCCAA+TGG 0.621858 3.2:+17100698 MS.gene83774:CDS
GTTCTTACTAAAACATAAGG+CGG 0.624357 3.2:+17101095 MS.gene83774:CDS
CAGGACTACTACAGACATGA+GGG 0.625095 3.2:+17101273 MS.gene83774:CDS
GATGATGGAGTCAAGTCTAA+CGG 0.626466 3.2:-17102032 None:intergenic
TCAGGACTACTACAGACATG+AGG 0.632763 3.2:+17101272 MS.gene83774:CDS
GTATAAGTCAGCAACTTGAA+CGG 0.634263 3.2:-17101685 None:intergenic
GTAATGACTCCAATGTTGCA+AGG 0.650624 3.2:-17100956 None:intergenic
GTCAAGTCTAACGGACTGTG+TGG 0.657876 3.2:-17102023 None:intergenic
GTGCGACATTCATGAAAGGG+AGG 0.658783 3.2:+17098758 MS.gene83774:CDS
ATAAGAAGAATTCTCAGTGG+AGG 0.665480 3.2:-17098931 None:intergenic
TTCCAATTCAGGAATTGGCG+CGG 0.668895 3.2:+17100828 MS.gene83774:CDS
CGTCAGTATTTAATCCACCA+AGG 0.673418 3.2:-17098800 None:intergenic
ATGTCTGTAGTAGTCCTGAG+AGG 0.696842 3.2:-17101268 None:intergenic
GGGATAAGAAGAATTCTCAG+TGG 0.734712 3.2:-17098934 None:intergenic
GCTTCTCGTAGAGAGCACTG+AGG 0.826263 3.2:-17101327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGTACTATTTTGAA+AGG - chr3.2:17102287-17102306 None:intergenic 15.0%
!!! TTAAATTCTTAAGTCATTTT+TGG + chr3.2:17101766-17101785 MS.gene83774:CDS 15.0%
!! TTAGTGATTAAAGACATTAA+TGG - chr3.2:17099701-17099720 None:intergenic 20.0%
!!! TTATCTTGATAATAATGAGA+AGG - chr3.2:17098657-17098676 None:intergenic 20.0%
! AAATTAGTAAATGGCAAACA+TGG - chr3.2:17102575-17102594 None:intergenic 25.0%
! AACACTTAGAGATATTCAAA+TGG + chr3.2:17098218-17098237 MS.gene83774:CDS 25.0%
! AATGGACACAAATTAGTAAA+TGG - chr3.2:17102584-17102603 None:intergenic 25.0%
! ACATCTTTGAATATGTTTGT+AGG - chr3.2:17101460-17101479 None:intergenic 25.0%
! ACTTATTGTTAATAGTAGAG+TGG - chr3.2:17102488-17102507 None:intergenic 25.0%
! GGCATAAAATTCTTTATCAT+AGG - chr3.2:17100926-17100945 None:intergenic 25.0%
! TCTAATAAATCATCAAGTCT+AGG - chr3.2:17100139-17100158 None:intergenic 25.0%
! TTTGAATATCTCTAAGTGTT+TGG - chr3.2:17098218-17098237 None:intergenic 25.0%
!! ATCCAGATTTTCAAAAGTTT+TGG + chr3.2:17101226-17101245 MS.gene83774:CDS 25.0%
!! CGGTAAAAATCTAAAACAAT+GGG + chr3.2:17101908-17101927 MS.gene83774:CDS 25.0%
!! TCGGTAAAAATCTAAAACAA+TGG + chr3.2:17101907-17101926 MS.gene83774:CDS 25.0%
!! TTAAAATTGGAGATTTGGTA+TGG + chr3.2:17102195-17102214 MS.gene83774:CDS 25.0%
!!! TTCCAAAACTTTTGAAAATC+TGG - chr3.2:17101231-17101250 None:intergenic 25.0%
!!! TTTCAGTCAAAAGTTGTTTT+AGG - chr3.2:17100753-17100772 None:intergenic 25.0%
AAAAAGCAAGATCAAGACTT+GGG + chr3.2:17098596-17098615 MS.gene83774:CDS 30.0%
AAATCATCAAGTCTAGGTAT+CGG - chr3.2:17100133-17100152 None:intergenic 30.0%
AATCAATGACAATGCTTACA+AGG + chr3.2:17102304-17102323 MS.gene83774:CDS 30.0%
AATGACTTTCATTTGCATAG+TGG - chr3.2:17101172-17101191 None:intergenic 30.0%
AATTCAACTAATCAAGCTAC+TGG + chr3.2:17101966-17101985 MS.gene83774:CDS 30.0%
ACTATGCAAATGAAAGTCAT+TGG + chr3.2:17101171-17101190 MS.gene83774:CDS 30.0%
AGCATTTGTTCAATTTCTAC+TGG - chr3.2:17099806-17099825 None:intergenic 30.0%
ATGAGCTCTTCATCATAAAT+TGG - chr3.2:17099185-17099204 None:intergenic 30.0%
ATGATGTTAGAAGTTTCCAT+GGG + chr3.2:17100608-17100627 MS.gene83774:intron 30.0%
CATGGTAGTTGAAATAGTAA+TGG - chr3.2:17102602-17102621 None:intergenic 30.0%
CATTACTATTTCAACTACCA+TGG + chr3.2:17102600-17102619 MS.gene83774:intron 30.0%
CCACTCTACTATTAACAATA+AGG + chr3.2:17102485-17102504 MS.gene83774:intron 30.0%
CCTTATTGTTAATAGTAGAG+TGG - chr3.2:17102544-17102563 None:intergenic 30.0%
GATTAAAGACATTAATGGCT+TGG - chr3.2:17099696-17099715 None:intergenic 30.0%
GATTTATTAGATCAGTTGCA+TGG + chr3.2:17100148-17100167 MS.gene83774:intron 30.0%
GTTCTTACTAAAACATAAGG+CGG + chr3.2:17101095-17101114 MS.gene83774:CDS 30.0%
TAAATGTTTCTCCACTCTTA+TGG - chr3.2:17098883-17098902 None:intergenic 30.0%
TACTGATGTTTATCTGATGA+TGG - chr3.2:17102050-17102069 None:intergenic 30.0%
TAGTGAGAGAGAATTTCTAT+TGG + chr3.2:17101415-17101434 MS.gene83774:intron 30.0%
TATTGTTAATAGTAGAGTGG+TGG - chr3.2:17102485-17102504 None:intergenic 30.0%
TCCGTTCTTACTAAAACATA+AGG + chr3.2:17101092-17101111 MS.gene83774:CDS 30.0%
TCTAACTCTTCTTCTTTCTT+AGG - chr3.2:17099161-17099180 None:intergenic 30.0%
TGTGATGTTATAATAGACAG+TGG + chr3.2:17099326-17099345 MS.gene83774:intron 30.0%
TTACAGTTTCTTGTAACTGT+TGG - chr3.2:17098263-17098282 None:intergenic 30.0%
TTCTTACTAAAACATAAGGC+GGG + chr3.2:17101096-17101115 MS.gene83774:CDS 30.0%
TTTAGTGAAAAGCTCAACAA+TGG + chr3.2:17100883-17100902 MS.gene83774:CDS 30.0%
TTTGTTCAATTTCTACTGGA+AGG - chr3.2:17099802-17099821 None:intergenic 30.0%
! AAGATCGATCTTTGAAAAGA+TGG - chr3.2:17100179-17100198 None:intergenic 30.0%
! AATTTTGCTGAATTATCCGT+TGG - chr3.2:17102130-17102149 None:intergenic 30.0%
! ATTCTATAAGCTGGTCTATT+AGG - chr3.2:17099929-17099948 None:intergenic 30.0%
! GCATATAAAAACCAGTGTTT+TGG - chr3.2:17101512-17101531 None:intergenic 30.0%
! GTAGATATTCCTGATTTTGA+AGG + chr3.2:17098408-17098427 MS.gene83774:CDS 30.0%
! TGTGGATAGATTTTCAAAGA+TGG + chr3.2:17101629-17101648 MS.gene83774:intron 30.0%
! TGTTTCAAATGTCAAGGTTT+TGG + chr3.2:17099041-17099060 MS.gene83774:intron 30.0%
! TTTTACTCCATCTTTGACAA+AGG - chr3.2:17099621-17099640 None:intergenic 30.0%
! TTTTAGATTTTCCCACCAAA+TGG - chr3.2:17098556-17098575 None:intergenic 30.0%
! TTTTCACTAAAGAAGGCTAT+AGG - chr3.2:17100874-17100893 None:intergenic 30.0%
!! AGAAGTATCAAGATCAAGTT+TGG + chr3.2:17099498-17099517 MS.gene83774:intron 30.0%
!!! AAAACTTTTTTGTGCTTGCT+CGG - chr3.2:17100725-17100744 None:intergenic 30.0%
!!! GCCTTATGTTTTAGTAAGAA+CGG - chr3.2:17101096-17101115 None:intergenic 30.0%
!!! TTGTTTTTATCAAGTCCACT+CGG - chr3.2:17099665-17099684 None:intergenic 30.0%
AAAACAATGGGATCTCATCT+TGG + chr3.2:17101920-17101939 MS.gene83774:CDS 35.0%
AAACTACAATGGCTCAACAA+AGG + chr3.2:17099425-17099444 MS.gene83774:intron 35.0%
AAATGCACAACAAGCACAAT+TGG + chr3.2:17098281-17098300 MS.gene83774:CDS 35.0%
AACATCTCTATCAGAAGTGA+TGG - chr3.2:17101748-17101767 None:intergenic 35.0%
AAGGAAATTGTTCGTCTTCA+TGG + chr3.2:17101711-17101730 MS.gene83774:CDS 35.0%
ACTACAAACTTGCCAATGAA+TGG - chr3.2:17100355-17100374 None:intergenic 35.0%
ATAAGAAGAATTCTCAGTGG+AGG - chr3.2:17098934-17098953 None:intergenic 35.0%
ATAGGATAAAGCTCATGGTT+TGG - chr3.2:17099754-17099773 None:intergenic 35.0%
ATCTTGATACTTCTGACCAA+TGG - chr3.2:17099492-17099511 None:intergenic 35.0%
ATTCATTGGCAAGTTTGTAG+TGG + chr3.2:17100354-17100373 MS.gene83774:intron 35.0%
ATTCCTGTAAGAATGCTTCT+TGG - chr3.2:17098907-17098926 None:intergenic 35.0%
CATGATGTTAGAAGTTTCCA+TGG + chr3.2:17100607-17100626 MS.gene83774:intron 35.0%
CCAGAGATGGTTTATATGAA+TGG + chr3.2:17100260-17100279 MS.gene83774:intron 35.0%
CCATTCATATAAACCATCTC+TGG - chr3.2:17100263-17100282 None:intergenic 35.0%
CTAACATCATGAATTGACTG+TGG - chr3.2:17100598-17100617 None:intergenic 35.0%
CTCATCCTTACAAACTACAA+TGG + chr3.2:17099414-17099433 MS.gene83774:intron 35.0%
GAAAAAGCAAGATCAAGACT+TGG + chr3.2:17098595-17098614 MS.gene83774:CDS 35.0%
GAACAATAGGATAAAGCTCA+TGG - chr3.2:17099759-17099778 None:intergenic 35.0%
GACCAATGGAAAAATTCACA+AGG - chr3.2:17099478-17099497 None:intergenic 35.0%
GTAATTTCAGCATGTTCTTG+TGG - chr3.2:17099956-17099975 None:intergenic 35.0%
GTATAAGTCAGCAACTTGAA+CGG - chr3.2:17101688-17101707 None:intergenic 35.0%
TAAAGGGAGATCAATTCCAA+TGG + chr3.2:17100698-17100717 MS.gene83774:CDS 35.0%
TATAAAACGAAGCTAACCCA+TGG - chr3.2:17100627-17100646 None:intergenic 35.0%
TATCGGAAATCGATACTTGA+TGG - chr3.2:17100116-17100135 None:intergenic 35.0%
TATTCGTTTAGCCATAAGAG+TGG + chr3.2:17098869-17098888 MS.gene83774:CDS 35.0%
TCATGAATTGACTGTGGAAT+AGG - chr3.2:17100592-17100611 None:intergenic 35.0%
TCTACGAGAAGCCATTATTT+GGG + chr3.2:17101338-17101357 MS.gene83774:CDS 35.0%
TCTCTGAATGATTGTCTTTG+TGG - chr3.2:17098375-17098394 None:intergenic 35.0%
TGTAGCTTTCCTTCAAAATC+AGG - chr3.2:17098420-17098439 None:intergenic 35.0%
TTAATCTGTATCATTCTCCC+CGG - chr3.2:17102438-17102457 None:intergenic 35.0%
TTCCTGTAAGAATGCTTCTT+GGG - chr3.2:17098906-17098925 None:intergenic 35.0%
TTGGGTTTATTTACTGTGGT+GGG - chr3.2:17099011-17099030 None:intergenic 35.0%
TTGTAAAAACTCACTCCAAG+CGG - chr3.2:17101067-17101086 None:intergenic 35.0%
! AAATGTGGTATCGAACTACA+TGG + chr3.2:17099358-17099377 MS.gene83774:intron 35.0%
! AACCAACAAAGTTACTTTCC+TGG + chr3.2:17100501-17100520 MS.gene83774:intron 35.0%
! AACCTTGACATTTGAAACAC+TGG - chr3.2:17099040-17099059 None:intergenic 35.0%
! AACTTGGCATTTGGTTGTTT+TGG - chr3.2:17102245-17102264 None:intergenic 35.0%
! ACCAACAAAGTTACTTTCCT+GGG + chr3.2:17100502-17100521 MS.gene83774:intron 35.0%
! ACCTTGACATTTGAAACACT+GGG - chr3.2:17099039-17099058 None:intergenic 35.0%
! ACTGCATTTAAAACCAGAGA+TGG + chr3.2:17100247-17100266 MS.gene83774:intron 35.0%
! AGTAACTTTGTTGGTTAGGA+AGG - chr3.2:17100497-17100516 None:intergenic 35.0%
! ATCGATCTTTGAAAAGATGG+TGG - chr3.2:17100176-17100195 None:intergenic 35.0%
! CAGACAAGTTTTTCTGACAA+AGG - chr3.2:17098698-17098717 None:intergenic 35.0%
! CATGAGGGATTTTTGTTCAA+AGG + chr3.2:17101288-17101307 MS.gene83774:CDS 35.0%
! CATTGTAGTTTGTAAGGATG+AGG - chr3.2:17099416-17099435 None:intergenic 35.0%
! CTATCAGAAGTGATGGTTTT+TGG - chr3.2:17101741-17101760 None:intergenic 35.0%
! CTGCATTTTCTTCGAACAAT+AGG - chr3.2:17099772-17099791 None:intergenic 35.0%
! GAAGCTGTTAACAGGATTTT+GGG + chr3.2:17101864-17101883 MS.gene83774:CDS 35.0%
! GGAAAGTAACTTTGTTGGTT+AGG - chr3.2:17100501-17100520 None:intergenic 35.0%
! GTTGAGCTTTTCACTAAAGA+AGG - chr3.2:17100881-17100900 None:intergenic 35.0%
! TACTGGAAAATGTCCTTTTG+AGG + chr3.2:17101983-17102002 MS.gene83774:CDS 35.0%
! TCTGCGATTGATCTTTTGTT+GGG - chr3.2:17101040-17101059 None:intergenic 35.0%
! TGAAGCTGTTAACAGGATTT+TGG + chr3.2:17101863-17101882 MS.gene83774:CDS 35.0%
! TGCCTTGTGAATTTTTCCAT+TGG + chr3.2:17099473-17099492 MS.gene83774:intron 35.0%
! TTGAGCCATTGTAGTTTGTA+AGG - chr3.2:17099422-17099441 None:intergenic 35.0%
! TTTGGGTTTATTTACTGTGG+TGG - chr3.2:17099012-17099031 None:intergenic 35.0%
!! AGAAGGTTTTGTAGAAGTAC+TGG - chr3.2:17098982-17099001 None:intergenic 35.0%
!! AGCTTATGAAGAAGTTGATG+AGG + chr3.2:17099118-17099137 MS.gene83774:intron 35.0%
!! AGCTTTGGGTTTATTTACTG+TGG - chr3.2:17099015-17099034 None:intergenic 35.0%
!! AGTTGCTGACTTATACTTCA+AGG + chr3.2:17101692-17101711 MS.gene83774:CDS 35.0%
!! ATGAACTTGCTATAAACTCG+AGG + chr3.2:17102396-17102415 MS.gene83774:intron 35.0%
!! ATTTTAGTCCCCAAAAAGGA+TGG + chr3.2:17100046-17100065 MS.gene83774:intron 35.0%
!! ATTTTTGGAGAACCTTATGG+AGG + chr3.2:17101781-17101800 MS.gene83774:CDS 35.0%
!! CATGCTATTGACTTTATTCC+TGG + chr3.2:17099893-17099912 MS.gene83774:intron 35.0%
!! TGCAATTTTAGTCCCCAAAA+AGG + chr3.2:17100042-17100061 MS.gene83774:intron 35.0%
!! TTTTTGGGGACTAAAATTGC+AGG - chr3.2:17100043-17100062 None:intergenic 35.0%
!!! CATCATTAGTCTTTTGGCAT+GGG - chr3.2:17101665-17101684 None:intergenic 35.0%
!!! CTGATCGTTATTTGTTTTGC+GGG - chr3.2:17098958-17098977 None:intergenic 35.0%
!!! GAAGGTTTTGTAGAAGTACT+GGG - chr3.2:17098981-17099000 None:intergenic 35.0%
!!! GCTGATCGTTATTTGTTTTG+CGG - chr3.2:17098959-17098978 None:intergenic 35.0%
!!! GGTTAGCTTCGTTTTATAGA+AGG + chr3.2:17100629-17100648 MS.gene83774:intron 35.0%
!!! GTCATTTTTGGAGAACCTTA+TGG + chr3.2:17101778-17101797 MS.gene83774:CDS 35.0%
!!! TGATCGTTATTTGTTTTGCG+GGG - chr3.2:17098957-17098976 None:intergenic 35.0%
!!! TGATCTTGCTTTTTCCTTCA+CGG - chr3.2:17098590-17098609 None:intergenic 35.0%
AAAATTGCAGGAACAGCACA+AGG - chr3.2:17100031-17100050 None:intergenic 40.0%
AAATTGCAGGAACAGCACAA+GGG - chr3.2:17100030-17100049 None:intergenic 40.0%
AACGTCTGATTGCATGTGTT+GGG - chr3.2:17098310-17098329 None:intergenic 40.0%
AAGATGTCGAGTATGCCATT+TGG + chr3.2:17101473-17101492 MS.gene83774:intron 40.0%
ACCCAGGAAAGTAACTTTGT+TGG - chr3.2:17100506-17100525 None:intergenic 40.0%
ACCCAGTGTTTCAAATGTCA+AGG + chr3.2:17099035-17099054 MS.gene83774:intron 40.0%
ACCTACTCCTTTGTCAAAGA+TGG + chr3.2:17099611-17099630 MS.gene83774:intron 40.0%
ACTTTGTGCTTGGATTACCT+CGG + chr3.2:17101574-17101593 MS.gene83774:intron 40.0%
AGAACCATCACCATCATCAA+AGG + chr3.2:17099092-17099111 MS.gene83774:intron 40.0%
AGAACCTTATGGAGGAAGAT+GGG + chr3.2:17101789-17101808 MS.gene83774:CDS 40.0%
AGAAGATGACATGCATCCAT+TGG - chr3.2:17099536-17099555 None:intergenic 40.0%
AGTGTTTGGTCGTTTCTTCT+TGG - chr3.2:17098204-17098223 None:intergenic 40.0%
ATAAGCTTCGCCTTTGATGA+TGG - chr3.2:17099105-17099124 None:intergenic 40.0%
ATCATGGGCTTCCCAAATAA+TGG - chr3.2:17101352-17101371 None:intergenic 40.0%
ATCCAGATATGGTGAAAGGT+CGG - chr3.2:17102375-17102394 None:intergenic 40.0%
ATCCAGATGAGTTCGTTGAT+TGG + chr3.2:17098439-17098458 MS.gene83774:CDS 40.0%
ATTATTTGGGAAGCCCATGA+TGG + chr3.2:17101351-17101370 MS.gene83774:CDS 40.0%
ATTCAGAGACAACGACATCA+AGG + chr3.2:17098386-17098405 MS.gene83774:CDS 40.0%
CAACAAAGGTAGTGAAGTGA+AGG + chr3.2:17099439-17099458 MS.gene83774:intron 40.0%
CAAGTACTTCGACCATTCAT+TGG + chr3.2:17100340-17100359 MS.gene83774:intron 40.0%
CAGTATTGTTGGAGTTGAAC+TGG - chr3.2:17098834-17098853 None:intergenic 40.0%
CAGTGGTAGTTGTGAAAATG+TGG + chr3.2:17099343-17099362 MS.gene83774:intron 40.0%
CAGTTCAACTCCAACAATAC+TGG + chr3.2:17098832-17098851 MS.gene83774:CDS 40.0%
CATCATCCAGATATGGTGAA+AGG - chr3.2:17102379-17102398 None:intergenic 40.0%
CATTTGCATAGTGGCAAGTA+GGG - chr3.2:17101163-17101182 None:intergenic 40.0%
CCCTTTATGCAATCTGTAAG+CGG - chr3.2:17100685-17100704 None:intergenic 40.0%
CCGCTTACAGATTGCATAAA+GGG + chr3.2:17100682-17100701 MS.gene83774:intron 40.0%
CCTTTATGCAATCTGTAAGC+GGG - chr3.2:17100684-17100703 None:intergenic 40.0%
CGTCAGTATTTAATCCACCA+AGG - chr3.2:17098803-17098822 None:intergenic 40.0%
CGTCTAATGTCCAGTATTGT+TGG - chr3.2:17098845-17098864 None:intergenic 40.0%
CTCTACGAGAAGCCATTATT+TGG + chr3.2:17101337-17101356 MS.gene83774:CDS 40.0%
CTTGAGCTGACATTGTATGT+AGG - chr3.2:17099247-17099266 None:intergenic 40.0%
CTTGATCTACAGCAAACACA+AGG + chr3.2:17100393-17100412 MS.gene83774:intron 40.0%
CTTTATGCAATCTGTAAGCG+GGG - chr3.2:17100683-17100702 None:intergenic 40.0%
GAAGTGCGACATTCATGAAA+GGG + chr3.2:17098755-17098774 MS.gene83774:CDS 40.0%
GAAGTGGATACCATCAAATC+AGG + chr3.2:17100200-17100219 MS.gene83774:intron 40.0%
GACAAACTGAAGCTGTTAAC+AGG + chr3.2:17101856-17101875 MS.gene83774:CDS 40.0%
GACTCAATTCAAAGAAGCTG+TGG + chr3.2:17099721-17099740 MS.gene83774:intron 40.0%
GATACCATCAAATCAGGCTT+AGG + chr3.2:17100206-17100225 MS.gene83774:intron 40.0%
GCAAGTTCATCATCCAGATA+TGG - chr3.2:17102386-17102405 None:intergenic 40.0%
GGGATAAGAAGAATTCTCAG+TGG - chr3.2:17098937-17098956 None:intergenic 40.0%
GGTTACATAATCACAGCTGA+AGG + chr3.2:17100523-17100542 MS.gene83774:intron 40.0%
GTAATGACTCCAATGTTGCA+AGG - chr3.2:17100959-17100978 None:intergenic 40.0%
TAATCTGTATCATTCTCCCC+GGG - chr3.2:17102437-17102456 None:intergenic 40.0%
TATAGTAATCCTAGAGGCCA+TGG - chr3.2:17102620-17102639 None:intergenic 40.0%
TCAAAGATCGATCTTCGAAG+TGG + chr3.2:17100184-17100203 MS.gene83774:intron 40.0%
TCATTTGCATAGTGGCAAGT+AGG - chr3.2:17101164-17101183 None:intergenic 40.0%
TCCATCTTTGACAAAGGAGT+AGG - chr3.2:17099615-17099634 None:intergenic 40.0%
TGAAGTGCGACATTCATGAA+AGG + chr3.2:17098754-17098773 MS.gene83774:CDS 40.0%
TGTGGACTCATTCTATAAGC+TGG - chr3.2:17099938-17099957 None:intergenic 40.0%
TTCAGTTTGTCCATCTGTCT+GGG - chr3.2:17101847-17101866 None:intergenic 40.0%
TTGAAACACTGGGTAGCTTT+GGG - chr3.2:17099029-17099048 None:intergenic 40.0%
TTGATTCATGAGACGCATGA+AGG - chr3.2:17100323-17100342 None:intergenic 40.0%
TTGGTGTGATGTTGTTCCAA+TGG + chr3.2:17099517-17099536 MS.gene83774:intron 40.0%
TTTGACAAAGGAGTAGGTGT+TGG - chr3.2:17099609-17099628 None:intergenic 40.0%
! AAATGGCAAACATGGCTTGT+TGG - chr3.2:17102567-17102586 None:intergenic 40.0%
! AACCTACTTCGGAGCTTTAT+CGG + chr3.2:17101888-17101907 MS.gene83774:CDS 40.0%
! AGTGGTGGAATATGAGGTAA+GGG - chr3.2:17102470-17102489 None:intergenic 40.0%
! ATCACAAACTTTTCCAGCAG+TGG - chr3.2:17099312-17099331 None:intergenic 40.0%
! ATTGGCTCCAAACTGTTGAA+CGG + chr3.2:17098457-17098476 MS.gene83774:CDS 40.0%
! CATTGGATTTGAGACAGTCA+AGG + chr3.2:17101188-17101207 MS.gene83774:CDS 40.0%
! GGAGCATTAGATAACCCAAA+GGG - chr3.2:17100295-17100314 None:intergenic 40.0%
! GTCTGCGATTGATCTTTTGT+TGG - chr3.2:17101041-17101060 None:intergenic 40.0%
! TAGTAGAGTGGTGGAATATG+AGG - chr3.2:17102476-17102495 None:intergenic 40.0%
! TGAAGAAGCATGCTTCCATT+TGG + chr3.2:17098538-17098557 MS.gene83774:CDS 40.0%
! TGGAGCATTAGATAACCCAA+AGG - chr3.2:17100296-17100315 None:intergenic 40.0%
! TTTGAAACACTGGGTAGCTT+TGG - chr3.2:17099030-17099049 None:intergenic 40.0%
! TTTTTATCAAGTCCACTCGG+TGG - chr3.2:17099662-17099681 None:intergenic 40.0%
!! AGAGCACTGAGGAATACATA+AGG - chr3.2:17101319-17101338 None:intergenic 40.0%
!! GATGATGGAGTCAAGTCTAA+CGG - chr3.2:17102035-17102054 None:intergenic 40.0%
!! GGATTTTGGGAAACCTACTT+CGG + chr3.2:17101877-17101896 MS.gene83774:CDS 40.0%
!! TACCCAAGAAGCATTCTTAC+AGG + chr3.2:17098901-17098920 MS.gene83774:CDS 40.0%
!!! AAAACCAGTGTTTTGGCCTT+TGG - chr3.2:17101505-17101524 None:intergenic 40.0%
!!! GAACGGCATCATTAGTCTTT+TGG - chr3.2:17101671-17101690 None:intergenic 40.0%
!!! GATCTTGCTTTTTCCTTCAC+GGG - chr3.2:17098589-17098608 None:intergenic 40.0%
!!! GCATCATTAGTCTTTTGGCA+TGG - chr3.2:17101666-17101685 None:intergenic 40.0%
!!! TGTCCTTTTGAGGTAGCATA+CGG + chr3.2:17101993-17102012 MS.gene83774:CDS 40.0%
AAGTTGTCACCAAGAGCTGA+TGG + chr3.2:17102260-17102279 MS.gene83774:CDS 45.0%
AATCCTTGTGGAACAGCTTC+TGG - chr3.2:17099851-17099870 None:intergenic 45.0%
AATGGACAGTGATGCCCTTT+GGG + chr3.2:17100278-17100297 MS.gene83774:intron 45.0%
ACAGCTTCTGGTACAACATC+TGG - chr3.2:17099839-17099858 None:intergenic 45.0%
ACCTGCTAATCCTCCATCAT+GGG - chr3.2:17101367-17101386 None:intergenic 45.0%
ACCTTGGGAAGATGTTAGCA+TGG + chr3.2:17101551-17101570 MS.gene83774:intron 45.0%
AGCCAATCAACGAACTCATC+TGG - chr3.2:17098444-17098463 None:intergenic 45.0%
AGGTTGAAGCCATCAACAGT+TGG + chr3.2:17100566-17100585 MS.gene83774:intron 45.0%
AGTACCCATCTTCCTCCATA+AGG - chr3.2:17101796-17101815 None:intergenic 45.0%
AGTTGTGACGCTTCCAATTC+AGG + chr3.2:17100817-17100836 MS.gene83774:CDS 45.0%
ATGAGGTAAGGGATGATGCA+AGG - chr3.2:17102459-17102478 None:intergenic 45.0%
ATGTCTGTAGTAGTCCTGAG+AGG - chr3.2:17101271-17101290 None:intergenic 45.0%
CAAACAATCGCTCGTTACCT+TGG + chr3.2:17098783-17098802 MS.gene83774:CDS 45.0%
CAAAGACCCGTTCAACAGTT+TGG - chr3.2:17098467-17098486 None:intergenic 45.0%
CAACGTCTGATTGCATGTGT+TGG - chr3.2:17098311-17098330 None:intergenic 45.0%
CACAACTTACTTCGAACACC+TGG - chr3.2:17100804-17100823 None:intergenic 45.0%
CAGCTGTGATTATGTAACCC+AGG - chr3.2:17100522-17100541 None:intergenic 45.0%
CAGCTTCTGGTACAACATCT+GGG - chr3.2:17099838-17099857 None:intergenic 45.0%
CAGGACTACTACAGACATGA+GGG + chr3.2:17101273-17101292 MS.gene83774:CDS 45.0%
CCCGCTTACAGATTGCATAA+AGG + chr3.2:17100681-17100700 MS.gene83774:intron 45.0%
CTACCATCACAGAATCCTTC+TGG - chr3.2:17101608-17101627 None:intergenic 45.0%
CTATTAGGAATGACAGCTCC+AGG - chr3.2:17099914-17099933 None:intergenic 45.0%
CTTCAGTTTGTCCATCTGTC+TGG - chr3.2:17101848-17101867 None:intergenic 45.0%
GAAGCATGCTTCCATTTGGT+GGG + chr3.2:17098542-17098561 MS.gene83774:CDS 45.0%
GACGCTTCCAATTCAGGAAT+TGG + chr3.2:17100823-17100842 MS.gene83774:CDS 45.0%
GAGAACCTTATGGAGGAAGA+TGG + chr3.2:17101788-17101807 MS.gene83774:CDS 45.0%
GATCTACAGCAAACACAAGG+AGG + chr3.2:17100396-17100415 MS.gene83774:intron 45.0%
GATGCATGTCATCTTCTCCT+TGG + chr3.2:17099539-17099558 MS.gene83774:intron 45.0%
GCATGTTGAATGTCTCGCAT+TGG - chr3.2:17099878-17099897 None:intergenic 45.0%
GCTTACAAGGTAGAATTGCC+AGG + chr3.2:17102317-17102336 MS.gene83774:intron 45.0%
GGATGAGGATGACTTTGTGT+TGG - chr3.2:17099401-17099420 None:intergenic 45.0%
GGATTCTGTGATGGTAGTTG+TGG + chr3.2:17101611-17101630 MS.gene83774:intron 45.0%
GTAGAATTGCCAGGAACCTA+TGG + chr3.2:17102326-17102345 MS.gene83774:intron 45.0%
GTCAAGTCGAAGAATTGCTG+AGG + chr3.2:17099978-17099997 MS.gene83774:intron 45.0%
GTCGAAGAATTGCTGAGGAA+AGG + chr3.2:17099983-17100002 MS.gene83774:intron 45.0%
GTTAGCATGGACTTTGTGCT+TGG + chr3.2:17101564-17101583 MS.gene83774:intron 45.0%
GTTCCGTATGCTACCTCAAA+AGG - chr3.2:17101999-17102018 None:intergenic 45.0%
GTTTGGTCGTTTCTTCTTGG+AGG - chr3.2:17098201-17098220 None:intergenic 45.0%
TACCGATAAAGCTCCGAAGT+AGG - chr3.2:17101893-17101912 None:intergenic 45.0%
TCAGGACTACTACAGACATG+AGG + chr3.2:17101272-17101291 MS.gene83774:CDS 45.0%
TCAGTTTGTCCATCTGTCTG+GGG - chr3.2:17101846-17101865 None:intergenic 45.0%
TCCATGCTAACATCTTCCCA+AGG - chr3.2:17101555-17101574 None:intergenic 45.0%
TCGAACACCTGGTCAAAGTT+GGG - chr3.2:17100793-17100812 None:intergenic 45.0%
TGAAAGGTCGGCAACATTGA+AGG - chr3.2:17102363-17102382 None:intergenic 45.0%
TGCATGAACAAGTTCGCCAA+CGG + chr3.2:17102111-17102130 MS.gene83774:CDS 45.0%
TGGAATAGGCCAACTGTTGA+TGG - chr3.2:17100578-17100597 None:intergenic 45.0%
TGTTGAATGTCTCGCATTGG+CGG - chr3.2:17099875-17099894 None:intergenic 45.0%
TTAACTCCATTACCACCGAG+TGG + chr3.2:17099647-17099666 MS.gene83774:intron 45.0%
TTCCAATTCAGGAATTGGCG+CGG + chr3.2:17100828-17100847 MS.gene83774:CDS 45.0%
TTCGAACACCTGGTCAAAGT+TGG - chr3.2:17100794-17100813 None:intergenic 45.0%
TTGAAAGGACCATCAGCTCT+TGG - chr3.2:17102272-17102291 None:intergenic 45.0%
TTGGCTCCAAACTGTTGAAC+GGG + chr3.2:17098458-17098477 MS.gene83774:CDS 45.0%
TTGTTGCAGATGCTCTTAGC+AGG + chr3.2:17101130-17101149 MS.gene83774:CDS 45.0%
TTTCAACTACCATGGCCTCT+AGG + chr3.2:17102608-17102627 MS.gene83774:intron 45.0%
! AGAAGCATGCTTCCATTTGG+TGG + chr3.2:17098541-17098560 MS.gene83774:CDS 45.0%
! ATCAGCTCTTGGTGACAACT+TGG - chr3.2:17102261-17102280 None:intergenic 45.0%
! CTCCAGCTTCCATCCTTTTT+GGG - chr3.2:17100058-17100077 None:intergenic 45.0%
! CTTGGTGACAACTTGGCATT+TGG - chr3.2:17102254-17102273 None:intergenic 45.0%
! GAGTGGTGGAATATGAGGTA+AGG - chr3.2:17102471-17102490 None:intergenic 45.0%
! TAGGCGTCTCTTTCAAGTCT+TGG - chr3.2:17101441-17101460 None:intergenic 45.0%
! TCCAGCTTCCATCCTTTTTG+GGG - chr3.2:17100057-17100076 None:intergenic 45.0%
! TCGAGTATGCCATTTGGCAA+AGG + chr3.2:17101479-17101498 MS.gene83774:intron 45.0%
! TCTCCAGCTTCCATCCTTTT+TGG - chr3.2:17100059-17100078 None:intergenic 45.0%
! TGTCAGCTCAAGAAGAGCAT+TGG + chr3.2:17099255-17099274 MS.gene83774:intron 45.0%
!! ACTGTGGTGGGTTTAAGAGA+AGG - chr3.2:17098999-17099018 None:intergenic 45.0%
!! ATGAGACGCATGAAGGTACT+TGG - chr3.2:17100316-17100335 None:intergenic 45.0%
!! ATGGTGATGGTTCTTCGTGT+TGG - chr3.2:17099086-17099105 None:intergenic 45.0%
!! CTCAAGAAGAGCATTGGTTG+AGG + chr3.2:17099261-17099280 MS.gene83774:intron 45.0%
!! GGAGGATTAGCAGGTCATTT+TGG + chr3.2:17101372-17101391 MS.gene83774:CDS 45.0%
!! TATTCGAGTTGACTCCAGCA+AGG + chr3.2:17100546-17100565 MS.gene83774:intron 45.0%
!! TTCGCCTTTGATGATGGTGA+TGG - chr3.2:17099099-17099118 None:intergenic 45.0%
AAAACAAAGCGAGCCCGTGA+AGG + chr3.2:17098573-17098592 MS.gene83774:CDS 50.0%
AACCGCGCCAATTCCTGAAT+TGG - chr3.2:17100833-17100852 None:intergenic 50.0%
AAGGCCAAAGGCCAAAACAC+TGG + chr3.2:17101498-17101517 MS.gene83774:intron 50.0%
ACAATCGCTCGTTACCTTGG+TGG + chr3.2:17098786-17098805 MS.gene83774:CDS 50.0%
ACACCTGGTCAAAGTTGGGA+AGG - chr3.2:17100789-17100808 None:intergenic 50.0%
ACGCCAGAAGGATTCTGTGA+TGG + chr3.2:17101602-17101621 MS.gene83774:intron 50.0%
AGGACGAGTTCTGTTCAACC+CGG + chr3.2:17102416-17102435 MS.gene83774:intron 50.0%
ATCTTCTCCTTGGAAGACCC+TGG + chr3.2:17099549-17099568 MS.gene83774:intron 50.0%
ATGTTGCAAGGCTCGGACAA+TGG - chr3.2:17100947-17100966 None:intergenic 50.0%
ATTTGGGAAGCCCATGATGG+AGG + chr3.2:17101354-17101373 MS.gene83774:CDS 50.0%
CACCTGGTCAAAGTTGGGAA+GGG - chr3.2:17100788-17100807 None:intergenic 50.0%
CAGTTTGTCCATCTGTCTGG+GGG - chr3.2:17101845-17101864 None:intergenic 50.0%
CATCAAATCAGGCTTAGGCC+AGG + chr3.2:17100211-17100230 MS.gene83774:intron 50.0%
CTGAGAGGATTGCGAATCAG+TGG - chr3.2:17101256-17101275 None:intergenic 50.0%
GAAGGTTGCTGAGACACCAT+AGG - chr3.2:17102345-17102364 None:intergenic 50.0%
GAATGGACAGTGATGCCCTT+TGG + chr3.2:17100277-17100296 MS.gene83774:intron 50.0%
GACCTGCTAATCCTCCATCA+TGG - chr3.2:17101368-17101387 None:intergenic 50.0%
GACTCCAATGTTGCAAGGCT+CGG - chr3.2:17100954-17100973 None:intergenic 50.0%
GAGCTCATTGTTGCTGACCA+TGG + chr3.2:17099197-17099216 MS.gene83774:intron 50.0%
GCAGTCTTCCATTCATCTCC+TGG - chr3.2:17100232-17100251 None:intergenic 50.0%
GGTAAGGGATGATGCAAGGT+AGG - chr3.2:17102511-17102530 None:intergenic 50.0%
GTACCAGAAGCTGTTCCACA+AGG + chr3.2:17099845-17099864 MS.gene83774:intron 50.0%
GTGCGACATTCATGAAAGGG+AGG + chr3.2:17098758-17098777 MS.gene83774:CDS 50.0%
TCCCCAAAAAGGATGGAAGC+TGG + chr3.2:17100053-17100072 MS.gene83774:intron 50.0%
TGCCGACCTTTCACCATATC+TGG + chr3.2:17102370-17102389 MS.gene83774:intron 50.0%
TTGTCCGAGCCTTGCAACAT+TGG + chr3.2:17100947-17100966 MS.gene83774:CDS 50.0%
TTTGTGCTTGCTCGGTCCAT+TGG - chr3.2:17100717-17100736 None:intergenic 50.0%
! ACATCTTCCCAAGGTGCTTC+TGG - chr3.2:17101546-17101565 None:intergenic 50.0%
! CTGGCCTAAGCCTGATTTGA+TGG - chr3.2:17100213-17100232 None:intergenic 50.0%
! TCAAGTCCACTCGGTGGTAA+TGG - chr3.2:17099656-17099675 None:intergenic 50.0%
! TGCCATTTGGCAAAGGCCAA+AGG + chr3.2:17101486-17101505 MS.gene83774:intron 50.0%
!! CACTGATTCGCAATCCTCTC+AGG + chr3.2:17101254-17101273 MS.gene83774:CDS 50.0%
!! GTCAAGTCTAACGGACTGTG+TGG - chr3.2:17102026-17102045 None:intergenic 50.0%
!! GTTGATGGCTTCAACCTTGC+TGG - chr3.2:17100563-17100582 None:intergenic 50.0%
AGCACGACGATCGTATTGCC+AGG - chr3.2:17099570-17099589 None:intergenic 55.0%
AGCCCTTCCCAACTTTGACC+AGG + chr3.2:17100783-17100802 MS.gene83774:CDS 55.0%
CAGCAGTGGTGCAACGAGTA+TGG - chr3.2:17099298-17099317 None:intergenic 55.0%
CATACTCGTTGCACCACTGC+TGG + chr3.2:17099296-17099315 MS.gene83774:intron 55.0%
CGTATTGCCAGGGTCTTCCA+AGG - chr3.2:17099559-17099578 None:intergenic 55.0%
GACGAGTTCTGTTCAACCCG+GGG + chr3.2:17102418-17102437 MS.gene83774:intron 55.0%
GCACGACGATCGTATTGCCA+GGG - chr3.2:17099569-17099588 None:intergenic 55.0%
GCTGAGACACCATAGGTTCC+TGG - chr3.2:17102338-17102357 None:intergenic 55.0%
GGACGAGTTCTGTTCAACCC+GGG + chr3.2:17102417-17102436 MS.gene83774:intron 55.0%
GGCGCGGTTCTATGTCAAGA+AGG + chr3.2:17100844-17100863 MS.gene83774:CDS 55.0%
GGCTTAGGCCAGGAGATGAA+TGG + chr3.2:17100221-17100240 MS.gene83774:intron 55.0%
TCAATCGCAGACATGCCGCT+TGG + chr3.2:17101049-17101068 MS.gene83774:CDS 55.0%
TGATCACCAGAGACTCGCCA+TGG - chr3.2:17099217-17099236 None:intergenic 55.0%
! GCCCATGATGGAGGATTAGC+AGG + chr3.2:17101363-17101382 MS.gene83774:CDS 55.0%
! GGCCTTTGGCCTTTGCCAAA+TGG - chr3.2:17101491-17101510 None:intergenic 55.0%
!! CCCAAGGTGCTTCTGGAACA+GGG - chr3.2:17101539-17101558 None:intergenic 55.0%
!! CCCTGTTCCAGAAGCACCTT+GGG + chr3.2:17101536-17101555 MS.gene83774:intron 55.0%
!! GCTTCTCGTAGAGAGCACTG+AGG - chr3.2:17101330-17101349 None:intergenic 55.0%
!! TCCCAAGGTGCTTCTGGAAC+AGG - chr3.2:17101540-17101559 None:intergenic 55.0%
!! TCCCTGTTCCAGAAGCACCT+TGG + chr3.2:17101535-17101554 MS.gene83774:intron 55.0%
ACCTCGGACTCAACGCCAGA+AGG + chr3.2:17101590-17101609 MS.gene83774:intron 60.0%
GCTAGTCACCCCCAGACAGA+TGG + chr3.2:17101834-17101853 MS.gene83774:CDS 60.0%
TGCTGACCATGGCGAGTCTC+TGG + chr3.2:17099208-17099227 MS.gene83774:intron 60.0%
! CGCATTGGCGGCAATCCTTG+TGG - chr3.2:17099863-17099882 None:intergenic 60.0%
! TCCTTCTGGCGTTGAGTCCG+AGG - chr3.2:17101594-17101613 None:intergenic 60.0%
!! GGTGCTTCTGGAACAGGGAG+TGG - chr3.2:17101534-17101553 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 17098195 17102644 17098195 ID=MS.gene83774
chr3.2 mRNA 17098195 17102644 17098195 ID=MS.gene83774.t1;Parent=MS.gene83774
chr3.2 exon 17098195 17098981 17098195 ID=MS.gene83774.t1.exon1;Parent=MS.gene83774.t1
chr3.2 CDS 17098195 17098981 17098195 ID=cds.MS.gene83774.t1;Parent=MS.gene83774.t1
chr3.2 exon 17100692 17101416 17100692 ID=MS.gene83774.t1.exon2;Parent=MS.gene83774.t1
chr3.2 CDS 17100692 17101416 17100692 ID=cds.MS.gene83774.t1;Parent=MS.gene83774.t1
chr3.2 exon 17101675 17102325 17101675 ID=MS.gene83774.t1.exon3;Parent=MS.gene83774.t1
chr3.2 CDS 17101675 17102325 17101675 ID=cds.MS.gene83774.t1;Parent=MS.gene83774.t1
chr3.2 exon 17102630 17102644 17102630 ID=MS.gene83774.t1.exon4;Parent=MS.gene83774.t1
chr3.2 CDS 17102630 17102644 17102630 ID=cds.MS.gene83774.t1;Parent=MS.gene83774.t1
Gene Sequence

>MS.gene83774

ATGCCTCCAAGAAGAAACGACCAAACACTTAGAGATATTCAAATGGAAGAAATGAGAAGACAAATCCAACAGTTACAAGAAACTGTAAATGCACAACAAGCACAATTGGAAGCCCAACACATGCAATCAGACGTTGATGAATCAAGTAACGAATCATCATCATTAAGAAGTCGTCGTCCACAAAGACAATCATTCAGAGACAACGACATCAAGGTAGATATTCCTGATTTTGAAGGAAAGCTACATCCAGATGAGTTCGTTGATTGGCTCCAAACTGTTGAACGGGTCTTTGAGTATAAAGAGATACTTGAAGAAAAGAAAGTCAAGATCATTGCTGTCAAATTGAAGAAGCATGCTTCCATTTGGTGGGAAAATCTAAAAACAAAGCGAGCCCGTGAAGGAAAAAGCAAGATCAAGACTTGGGAGAAAATGCGTCGAGAACTAAGCAAAAAGTTCTTGCCTTCTCATTATTATCAAGATAATTTTATTCAACTACAGAACCTTTGTCAGAAAAACTTGTCTGTAGAAGAATACACTAGAGAATTTGAGAAGTTAATGATGAAGTGCGACATTCATGAAAGGGAGGAGCAAACAATCGCTCGTTACCTTGGTGGATTAAATACTGACGTTGCTCATCCAGTTCAACTCCAACAATACTGGACATTAGACGATGTTATTCGTTTAGCCATAAGAGTGGAGAAACATTTACCCAAGAAGCATTCTTACAGGAATTTTTCCTCCACTGAGAATTCTTCTTATCCCCGCAAAACAAATAACGATCAGCCCAGTACTTCTACAAAACCTTCTCTTAAACCCACCACAGTAAATAAACCCAAAGCTACCCAGTGTTTCAAATGTCAAGGTTTTGGACATATAGCTTCAAATTGTCCAACACGAAGAACCATCACCATCATCAAAGGCGAAGCTTATGAAGAAGTTGATGAGGAAACAAATCAAGATGAACCTAAGAAAGAAGAAGAGTTAGAGCCAATTTATGATGAAGAGCTCATTGTTGCTGACCATGGCGAGTCTCTGGTGATCAGACGAAGCCTACATACAATGTCAGCTCAAGAAGAGCATTGGTTGAGGAAAAACATTTTCCATACTCGTTGCACCACTGCTGGAAAAGTTTGTGATGTTATAATAGACAGTGGTAGTTGTGAAAATGTGGTATCGAACTACATGGTAGAGAAGTTAGAGATGCCAACACAAAGTCATCCTCATCCTTACAAACTACAATGGCTCAACAAAGGTAGTGAAGTGAAGGTTACGAAGCGTTGCCTTGTGAATTTTTCCATTGGTCAGAAGTATCAAGATCAAGTTTGGTGTGATGTTGTTCCAATGGATGCATGTCATCTTCTCCTTGGAAGACCCTGGCAATACGATCGTCGTGCTCATCATGATTGTTATGCCAACACCTACTCCTTTGTCAAAGATGGAGTAAAAATCAAGTTAACTCCATTACCACCGAGTGGACTTGATAAAAACAAAAATGAGTCCAAGCCATTAATGTCTTTAATCACTAAGACTCAATTCAAAGAAGCTGTGGATGAAGTCCAAACCATGAGCTTTATCCTATTGTTCGAAGAAAATGCAGAAACTGTCCTTCCAGTAGAAATTGAACAAATGCTCAGTGAATTCCCAGATGTTGTACCAGAAGCTGTTCCACAAGGATTGCCGCCAATGCGAGACATTCAACATGCTATTGACTTTATTCCTGGAGCTGTCATTCCTAATAGACCAGCTTATAGAATGAGTCCACAAGAACATGCTGAAATTACACGTCAAGTCGAAGAATTGCTGAGGAAAGGACTAATACAAGAAAGTGTTAGCCCTTGTGCTGTTCCTGCAATTTTAGTCCCCAAAAAGGATGGAAGCTGGAGAATGTGTGTTGATAGTCGAGCTGTCAACAAGATTACCATCAAGTATCGATTTCCGATACCTAGACTTGATGATTTATTAGATCAGTTGCATGGTGCCACCATCTTTTCAAAGATCGATCTTCGAAGTGGATACCATCAAATCAGGCTTAGGCCAGGAGATGAATGGAAGACTGCATTTAAAACCAGAGATGGTTTATATGAATGGACAGTGATGCCCTTTGGGTTATCTAATGCTCCAAGTACCTTCATGCGTCTCATGAATCAAGTACTTCGACCATTCATTGGCAAGTTTGTAGTGGTCTACTTTGACGATATCTTGATCTACAGCAAACACAAGGAGGAACACTTAGAGCAGCTTCGACAAGTGTTACAAACTCTTCGCAAACAAAAACTCTATGCAAATTTGAAGAAATGTTCCTTCCTAACCAACAAAGTTACTTTCCTGGGTTACATAATCACAGCTGAAGGTATTCGAGTTGACTCCAGCAAGGTTGAAGCCATCAACAGTTGGCCTATTCCACAGTCAATTCATGATGTTAGAAGTTTCCATGGGTTAGCTTCGTTTTATAGAAGGTTCATCAAGAATTTTAGCTCTGTTGCTGCCCCGCTTACAGATTGCATAAAGGGAGATCAATTCCAATGGACCGAGCAAGCACAAAAAAGTTTTGACAACCTAAAACAACTTTTGACTGAAACACAAGTGCTAGCCCTTCCCAACTTTGACCAGGTGTTCGAAGTAAGTTGTGACGCTTCCAATTCAGGAATTGGCGCGGTTCTATGTCAAGAAGGTCATCCTATAGCCTTCTTTAGTGAAAAGCTCAACAATGGTAAACTTAGATACTCAACCTATGATAAAGAATTTTATGCCATTGTCCGAGCCTTGCAACATTGGAGTCATTACTTGTTGAATAAAGAATTTATTCTTTATTCTGATCATGAAGCTCTAAAGCATTTGAATTCCCAACAAAAGATCAATCGCAGACATGCCGCTTGGAGTGAGTTTTTACAAGCTTATCCGTTCTTACTAAAACATAAGGCGGGAGTTCAAAATGTTGTTGCAGATGCTCTTAGCAGGCGTCATACCCTACTTGCCACTATGCAAATGAAAGTCATTGGATTTGAGACAGTCAAGGAGTTATACAAAGATGATCCAGATTTTCAAAAGTTTTGGAATGCCACTGATTCGCAATCCTCTCAGGACTACTACAGACATGAGGGATTTTTGTTCAAAGGAAAAACCTTATGTATTCCTCAGTGCTCTCTACGAGAAGCCATTATTTGGGAAGCCCATGATGGAGGATTAGCAGGTCATTTTGGACGAGATAAAACTGTTGCTTTAGTGAGAGAGAATTTCTATTGGCCAAGACTTGAAAGAGACGCCTACAAACATATTCAAAGATGTCGAGTATGCCATTTGGCAAAGGCCAAAGGCCAAAACACTGGTTTTTATATGCCACTCCCTGTTCCAGAAGCACCTTGGGAAGATGTTAGCATGGACTTTGTGCTTGGATTACCTCGGACTCAACGCCAGAAGGATTCTGTGATGGTAGTTGTGGATAGATTTTCAAAGATGGCTCATTTCATCCCATGCCAAAAGACTAATGATGCCGTTCAAGTTGCTGACTTATACTTCAAGGAAATTGTTCGTCTTCATGGAATTCCAAAAACCATCACTTCTGATAGAGATGTTAAATTCTTAAGTCATTTTTGGAGAACCTTATGGAGGAAGATGGGTACTAAACTTCAGTTCAGTAGTGCTAGTCACCCCCAGACAGATGGACAAACTGAAGCTGTTAACAGGATTTTGGGAAACCTACTTCGGAGCTTTATCGGTAAAAATCTAAAACAATGGGATCTCATCTTGGCACAAGTTGAATTTGCATACAATAATTCAACTAATCAAGCTACTGGAAAATGTCCTTTTGAGGTAGCATACGGAACTCGACCACACAGTCCGTTAGACTTGACTCCATCATCAGATAAACATCAGTATAGTGCAGATGCAGAAAGCAGAGCAAAAGAGATCAAGAAACTGCATGAACAAGTTCGCCAACGGATAATTCAGCAAAATTCACGATACAAGACTAATCGTGACAAGCACAGAAGACAACAAATCTTTAAAATTGGAGATTTGGTATGGATACATTTGCGTAAAGAACGATTTCCAAAACAACCAAATGCCAAGTTGTCACCAAGAGCTGATGGTCCTTTCAAAATAGTACAAAAAATCAATGACAATGCTTACAAGGTAGAATTGCCAGGAACCTATGGTGTCTCAGCAACCTTCAATGTTGCCGACCTTTCACCATATCTGGATGATGAACTTGCTATAAACTCGAGGACGAGTTCTGTTCAACCCGGGGAGAATGATACAGATTAATTGCATCATCCCTTACCTCATATTCCACCACTCTACTATTAACAATAAGTCCTACCTTGCATCATCCCTTACCTCATATTCCACCACTCTACTATTAACAATAAGGCCAACAAGCCATGTTTGCCATTTACTAATTTGTGTCCATTACTATTTCAACTACCATGGCCTCTAGGATTACTATAAATAA

Protein sequence

>MS.gene83774.t1

MPPRRNDQTLRDIQMEEMRRQIQQLQETVNAQQAQLEAQHMQSDVDESSNESSSLRSRRPQRQSFRDNDIKVDIPDFEGKLHPDEFVDWLQTVERVFEYKEILEEKKVKIIAVKLKKHASIWWENLKTKRAREGKSKIKTWEKMRRELSKKFLPSHYYQDNFIQLQNLCQKNLSVEEYTREFEKLMMKCDIHEREEQTIARYLGGLNTDVAHPVQLQQYWTLDDVIRLAIRVEKHLPKKHSYRNFSSTENSSYPRKTNNDQPNCIKGDQFQWTEQAQKSFDNLKQLLTETQVLALPNFDQVFEVSCDASNSGIGAVLCQEGHPIAFFSEKLNNGKLRYSTYDKEFYAIVRALQHWSHYLLNKEFILYSDHEALKHLNSQQKINRRHAAWSEFLQAYPFLLKHKAGVQNVVADALSRRHTLLATMQMKVIGFETVKELYKDDPDFQKFWNATDSQSSQDYYRHEGFLFKGKTLCIPQCSLREAIIWEAHDGGLAGHFGRDKTVALTNDAVQVADLYFKEIVRLHGIPKTITSDRDVKFLSHFWRTLWRKMGTKLQFSSASHPQTDGQTEAVNRILGNLLRSFIGKNLKQWDLILAQVEFAYNNSTNQATGKCPFEVAYGTRPHSPLDLTPSSDKHQYSADAESRAKEIKKLHEQVRQRIIQQNSRYKTNRDKHRRQQIFKIGDLVWIHLRKERFPKQPNAKLSPRADGPFKIVQKINDNAYKDYYK