AlfalfaGEDB | MS.gene84375

M. sativa cultivar XinJiangDaYe / MS.gene84375

KEGG: K02937
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84375.t1	XP_003595099.1	97.7	86	2	0	2	87	145	230	1.70E-41	178.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84375.t1	P60039	86.0	86	12	0	2	87	143	228	2.1e-40	166.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84375.t1	A0A072VPV6	97.7	86	2	0	2	87	176	261	1.2e-41	178.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene84375	0.831336	1.77E-55	-1.69E-46
MS.gene049343	MS.gene84375	0.800093	1.69E-48	-1.69E-46
MS.gene050026	MS.gene84375	0.814858	1.24E-51	-1.69E-46
MS.gene050559	MS.gene84375	0.804166	2.46E-49	-1.69E-46
MS.gene050561	MS.gene84375	0.800943	1.14E-48	-1.69E-46
MS.gene050799	MS.gene84375	0.822619	2.15E-53	-1.69E-46
MS.gene051247	MS.gene84375	0.806734	7.12E-50	-1.69E-46
MS.gene051594	MS.gene84375	0.814904	1.21E-51	-1.69E-46
MS.gene051719	MS.gene84375	0.810282	1.25E-50	-1.69E-46
MS.gene051720	MS.gene84375	0.803294	3.73E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84375.t1	MTR_2g038250	97.674	86	2	0	2	87	145	230	7.03e-59	181
MS.gene84375.t1	MTR_1g022385	97.674	86	2	0	2	87	176	261	1.66e-58	181
MS.gene84375.t1	MTR_4g008160	89.535	86	9	0	2	87	144	229	2.45e-54	169
MS.gene84375.t1	MTR_1g022375	75.641	78	19	0	10	87	75	152	4.14e-39	127
MS.gene84375.t1	MTR_7g059170	48.000	100	47	1	2	96	147	246	4.68e-32	112

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84375.t1	AT2G44120	86.047	86	12	2	87	143	228	1.12e-53	167
MS.gene84375.t1	AT2G44120	86.047	86	12	2	87	148	233	1.52e-53	167
MS.gene84375.t1	AT2G01250	86.047	86	12	2	87	143	228	3.12e-53	166
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164
MS.gene84375.t1	AT3G13580	84.884	86	13	2	87	145	230	3.11e-52	164

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Find 25 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGCTTTGAGCTTGAA+AGG	0.504831	3.1:+4491000	None:intergenic
AAGAGAAATCACTATGTTGA+AGG	0.489111	3.1:-4490961	MS.gene84375:CDS
AAGCTCAAAGCTCCTTTGGG+TGG	0.570830	3.1:-4490994	MS.gene84375:CDS
ACATCAATGAACTCATTAGA+AGG	0.462677	3.1:-4490910	MS.gene84375:CDS
AGAAATCACTATGTTGAAGG+TGG	0.637998	3.1:-4490958	MS.gene84375:CDS
AGAGAATTGATCTACAAGCG+CGG	0.721136	3.1:-4491466	MS.gene84375:CDS
AGATAACTCTATCATTGAAC+AGG	0.482014	3.1:-4491407	MS.gene84375:intron
AGTGTTCAATTGCAGGTTCT+TGG	0.317764	3.1:-4491111	MS.gene84375:intron
ATCCAACAGTCATGATCTCG+TGG	0.585385	3.1:+4491055	None:intergenic
ATCCACGAGATCATGACTGT+TGG	0.549865	3.1:-4491057	MS.gene84375:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAAATCACTATGTTGA+AGG	-	chr3.1:4491507-4491526	MS.gene84375:intron	30.0%
AATTGAGTAAAGTACAGAGT+CGG	+	chr3.1:4491174-4491193	None:intergenic	30.0%
ACATCAATGAACTCATTAGA+AGG	-	chr3.1:4491558-4491577	MS.gene84375:intron	30.0%
AGATAACTCTATCATTGAAC+AGG	-	chr3.1:4491061-4491080	MS.gene84375:CDS	30.0%
AACAACTCACATTCTGACTT+TGG	+	chr3.1:4491199-4491218	None:intergenic	35.0%
AATAATAGCACCACCATACA+GGG	+	chr3.1:4491286-4491305	None:intergenic	35.0%
AGAAATCACTATGTTGAAGG+TGG	-	chr3.1:4491510-4491529	MS.gene84375:intron	35.0%
ATTGTTGAAGGTTATGTTGC+CGG	-	chr3.1:4491306-4491325	MS.gene84375:intron	35.0%
CTGAACTGTATGACATAGAT+GGG	-	chr3.1:4491135-4491154	MS.gene84375:intron	35.0%
TAATAATAGCACCACCATAC+AGG	+	chr3.1:4491287-4491306	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	4490906	4491584	4490906	ID=MS.gene84375
chr3.1	mRNA	4490906	4491584	4490906	ID=MS.gene84375.t1;Parent=MS.gene84375
chr3.1	exon	4491582	4491584	4491582	ID=MS.gene84375.t1.exon1;Parent=MS.gene84375.t1
chr3.1	CDS	4491582	4491584	4491582	ID=cds.MS.gene84375.t1;Parent=MS.gene84375.t1
chr3.1	exon	4491408	4491494	4491408	ID=MS.gene84375.t1.exon2;Parent=MS.gene84375.t1
chr3.1	CDS	4491408	4491494	4491408	ID=cds.MS.gene84375.t1;Parent=MS.gene84375.t1
chr3.1	exon	4490906	4491118	4490906	ID=MS.gene84375.t1.exon3;Parent=MS.gene84375.t1
chr3.1	CDS	4490906	4491118	4490906	ID=cds.MS.gene84375.t1;Parent=MS.gene84375.t1

Gene Sequence

>MS.gene84375

ATGGTAAGGAATACGATGATTCGCAAAAGGAGTTGATTGCGTTGAAGCGTGAAGCTAAGCTTAAGGGTGGATTTTATGTTGATCCTGAAGAGTGTTAGAGAATTGATCTACAAGCGCGGTTATGGAAAGGTTGATAGGCAAAGAATTGCTTTGACAGATAACTCTATCATTGAACAGGTATGTCTTTGATTAGTATTCCCTGCTTTCATTCGATCACACAGTTGTCAATCTGAACTGTATGACATAGATGGGATCTCGCTTCATTCCGACTCTGTACTTTACTCAATTTGCCAAAGTCAGAATGTGAGTTGTTTAAACTTGACTAGACAGTCTAGATTACGTGACTTTGTCTAATGTGTAATTTCTTGACCAATGTCCCCTGTATGGTGGTGCTATTATTATTGTTGAAGGTTATGTTGCCGGTTAAATTTTTCTATTTTTCATCTGACATAGTGTTCAATTGCAGGTTCTTGGGAAACATGGTATCATTTGCATTGAAGATCTCATCCACGAGATCATGACTGTTGGATCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTTTGGGTGGCATGAAGAAGAAGAGAAATCACTATGTTGAAGGTGGTGATGCTGGTATAACAGGGAGGATTACATCAATGAACTCATTAGAAGGATGA

Protein sequence

>MS.gene84375.t1

MSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEIMTVGSHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGITGRITSMNSLEG