Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27811.t1 | XP_003629785.1 | 99.4 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 5.80E-298 | 1032.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27811.t1 | Q94C70 | 83.6 | 524 | 86 | 0 | 1 | 524 | 1 | 524 | 5.8e-262 | 904.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27811.t1 | G7LJF6 | 99.4 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 4.2e-298 | 1032.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene27811 | 0.818857 | 1.57E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene27811 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene050707 | MS.gene27811 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene050875 | MS.gene27811 | 0.816656 | 4.94E-52 | -1.69E-46 |
| MS.gene05124 | MS.gene27811 | 0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene27811 | 0.840582 | 7.97E-58 | -1.69E-46 |
| MS.gene051896 | MS.gene27811 | 0.813387 | 2.63E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene27811 | 0.843295 | 1.53E-58 | -1.69E-46 |
| MS.gene051955 | MS.gene27811 | 0.859384 | 4.29E-63 | -1.69E-46 |
| MS.gene052143 | MS.gene27811 | 0.830428 | 2.95E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene27811 | 0.88713 | 1.87E-72 | -1.69E-46 |
| MS.gene052367 | MS.gene27811 | 0.859872 | 3.06E-63 | -1.69E-46 |
| MS.gene053173 | MS.gene27811 | 0.872568 | 2.88E-67 | -1.69E-46 |
| MS.gene053348 | MS.gene27811 | 0.868811 | 4.95E-66 | -1.69E-46 |
| MS.gene053416 | MS.gene27811 | 0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene27811 | 0.808664 | 2.77E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene27811 | 0.882443 | 1.04E-70 | -1.69E-46 |
| MS.gene054552 | MS.gene27811 | 0.815461 | 9.14E-52 | -1.69E-46 |
| MS.gene054593 | MS.gene27811 | 0.873086 | 1.93E-67 | -1.69E-46 |
| MS.gene054614 | MS.gene27811 | 0.814726 | 1.33E-51 | -1.69E-46 |
| MS.gene054633 | MS.gene27811 | 0.86248 | 4.92E-64 | -1.69E-46 |
| MS.gene054662 | MS.gene27811 | 0.841886 | 3.62E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene27811 | 0.813781 | 2.15E-51 | -1.69E-46 |
| MS.gene054885 | MS.gene27811 | 0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene054941 | MS.gene27811 | 0.834186 | 3.47E-56 | -1.69E-46 |
| MS.gene055308 | MS.gene27811 | 0.906439 | 1.48E-80 | -1.69E-46 |
| MS.gene055382 | MS.gene27811 | 0.832902 | 7.25E-56 | -1.69E-46 |
| MS.gene055578 | MS.gene27811 | 0.888981 | 3.64E-73 | -1.69E-46 |
| MS.gene055579 | MS.gene27811 | 0.836939 | 6.97E-57 | -1.69E-46 |
| MS.gene055957 | MS.gene27811 | 0.849631 | 2.86E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene27811 | 0.882935 | 6.86E-71 | -1.69E-46 |
| MS.gene056042 | MS.gene27811 | 0.813243 | 2.82E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene27811 | 0.892965 | 9.75E-75 | -1.69E-46 |
| MS.gene056526 | MS.gene27811 | 0.815824 | 7.58E-52 | -1.69E-46 |
| MS.gene056528 | MS.gene27811 | 0.830286 | 3.20E-55 | -1.69E-46 |
| MS.gene05652 | MS.gene27811 | 0.865441 | 5.89E-65 | -1.69E-46 |
| MS.gene057367 | MS.gene27811 | 0.848443 | 6.11E-60 | -1.69E-46 |
| MS.gene057458 | MS.gene27811 | 0.866681 | 2.39E-65 | -1.69E-46 |
| MS.gene057669 | MS.gene27811 | 0.840622 | 7.78E-58 | -1.69E-46 |
| MS.gene058013 | MS.gene27811 | 0.820389 | 7.04E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene27811 | 0.901149 | 3.59E-78 | -1.69E-46 |
| MS.gene058827 | MS.gene27811 | 0.833819 | 4.28E-56 | -1.69E-46 |
| MS.gene058828 | MS.gene27811 | 0.815178 | 1.06E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene27811 | 0.974128 | 1.30E-137 | -1.69E-46 |
| MS.gene059553 | MS.gene27811 | 0.856612 | 2.86E-62 | -1.69E-46 |
| MS.gene059616 | MS.gene27811 | 0.856689 | 2.71E-62 | -1.69E-46 |
| MS.gene060473 | MS.gene27811 | 0.865763 | 4.66E-65 | -1.69E-46 |
| MS.gene060565 | MS.gene27811 | 0.853549 | 2.22E-61 | -1.69E-46 |
| MS.gene060825 | MS.gene27811 | 0.817423 | 3.32E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene27811 | 0.887181 | 1.79E-72 | -1.69E-46 |
| MS.gene060985 | MS.gene27811 | 0.812881 | 3.39E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene27811 | 0.852782 | 3.68E-61 | -1.69E-46 |
| MS.gene061260 | MS.gene27811 | 0.882759 | 7.96E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86930 | MS.gene27811 | PPI |
| MS.gene43290 | MS.gene27811 | PPI |
| MS.gene074377 | MS.gene27811 | PPI |
| MS.gene96701 | MS.gene27811 | PPI |
| MS.gene044204 | MS.gene27811 | PPI |
| MS.gene25932 | MS.gene27811 | PPI |
| MS.gene25800 | MS.gene27811 | PPI |
| MS.gene71606 | MS.gene27811 | PPI |
| MS.gene033221 | MS.gene27811 | PPI |
| MS.gene60344 | MS.gene27811 | PPI |
| MS.gene70718 | MS.gene27811 | PPI |
| MS.gene70604 | MS.gene27811 | PPI |
| MS.gene022275 | MS.gene27811 | PPI |
| MS.gene56947 | MS.gene27811 | PPI |
| MS.gene27811 | MS.gene91317 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27811.t1 | MTR_8g086520 | 99.427 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1059 |
| MS.gene27811.t1 | MTR_2g016460 | 83.397 | 524 | 87 | 0 | 1 | 524 | 1 | 524 | 0.0 | 916 |
| MS.gene27811.t1 | MTR_8g086520 | 99.339 | 454 | 3 | 0 | 1 | 454 | 1 | 454 | 0.0 | 910 |
| MS.gene27811.t1 | MTR_8g086520 | 99.502 | 402 | 2 | 0 | 123 | 524 | 7 | 408 | 0.0 | 813 |
| MS.gene27811.t1 | MTR_8g086520 | 99.005 | 402 | 4 | 0 | 1 | 402 | 1 | 402 | 0.0 | 802 |
| MS.gene27811.t1 | MTR_3g080390 | 72.587 | 518 | 141 | 1 | 8 | 524 | 3 | 520 | 0.0 | 793 |
| MS.gene27811.t1 | MTR_8g063220 | 59.846 | 518 | 206 | 1 | 7 | 522 | 14 | 531 | 0.0 | 645 |
| MS.gene27811.t1 | MTR_3g078270 | 59.653 | 518 | 207 | 1 | 7 | 522 | 13 | 530 | 0.0 | 633 |
| MS.gene27811.t1 | MTR_4g106750 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 629 |
| MS.gene27811.t1 | MTR_1g021120 | 57.534 | 511 | 217 | 0 | 12 | 522 | 35 | 545 | 0.0 | 607 |
| MS.gene27811.t1 | MTR_5g035180 | 56.298 | 524 | 221 | 4 | 5 | 522 | 15 | 536 | 0.0 | 597 |
| MS.gene27811.t1 | MTR_4g106750 | 59.583 | 480 | 192 | 1 | 45 | 522 | 2 | 481 | 0.0 | 583 |
| MS.gene27811.t1 | MTR_3g103230 | 52.481 | 524 | 238 | 5 | 5 | 522 | 34 | 552 | 0.0 | 576 |
| MS.gene27811.t1 | MTR_1g106085 | 54.356 | 528 | 232 | 4 | 1 | 522 | 1 | 525 | 0.0 | 572 |
| MS.gene27811.t1 | MTR_5g022110 | 52.481 | 524 | 239 | 4 | 5 | 522 | 26 | 545 | 0.0 | 551 |
| MS.gene27811.t1 | MTR_4g106750 | 59.783 | 368 | 146 | 1 | 157 | 522 | 11 | 378 | 2.65e-158 | 456 |
| MS.gene27811.t1 | MTR_8g068550 | 35.727 | 543 | 309 | 6 | 11 | 521 | 221 | 755 | 4.16e-112 | 350 |
| MS.gene27811.t1 | MTR_2g084895 | 36.381 | 536 | 303 | 5 | 20 | 521 | 147 | 678 | 8.33e-111 | 344 |
| MS.gene27811.t1 | MTR_5g032020 | 37.170 | 530 | 297 | 5 | 20 | 517 | 168 | 693 | 1.61e-109 | 342 |
| MS.gene27811.t1 | MTR_2g103510 | 33.461 | 523 | 302 | 6 | 20 | 521 | 94 | 591 | 4.73e-100 | 314 |
| MS.gene27811.t1 | MTR_4g055290 | 34.701 | 536 | 307 | 6 | 20 | 521 | 154 | 680 | 1.31e-99 | 315 |
| MS.gene27811.t1 | MTR_8g086535 | 91.089 | 101 | 9 | 0 | 302 | 402 | 18 | 118 | 7.92e-54 | 177 |
| MS.gene27811.t1 | MTR_5g042660 | 64.286 | 56 | 20 | 0 | 455 | 510 | 39 | 94 | 1.00e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27811.t1 | AT2G34190 | 83.588 | 524 | 86 | 0 | 1 | 524 | 1 | 524 | 0.0 | 926 |
| MS.gene27811.t1 | AT2G05760 | 70.077 | 518 | 154 | 1 | 8 | 524 | 3 | 520 | 0.0 | 764 |
| MS.gene27811.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene27811.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene27811.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene27811.t1 | AT1G60030 | 57.198 | 514 | 218 | 1 | 11 | 522 | 23 | 536 | 0.0 | 621 |
| MS.gene27811.t1 | AT2G26510 | 57.553 | 523 | 221 | 1 | 1 | 522 | 25 | 547 | 0.0 | 612 |
| MS.gene27811.t1 | AT1G10540 | 54.771 | 524 | 231 | 4 | 5 | 522 | 14 | 537 | 0.0 | 590 |
| MS.gene27811.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene27811.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene27811.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene27811.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene27811.t1 | AT1G49960 | 55.832 | 523 | 228 | 2 | 3 | 522 | 2 | 524 | 0.0 | 577 |
| MS.gene27811.t1 | AT1G65550 | 50.758 | 528 | 248 | 5 | 5 | 522 | 14 | 539 | 0.0 | 552 |
| MS.gene27811.t1 | AT5G62890 | 58.482 | 448 | 186 | 0 | 7 | 454 | 13 | 460 | 0.0 | 535 |
| MS.gene27811.t1 | AT2G26510 | 57.867 | 375 | 158 | 0 | 1 | 375 | 25 | 399 | 1.07e-147 | 430 |
| MS.gene27811.t1 | AT1G10540 | 55.200 | 375 | 164 | 3 | 5 | 375 | 14 | 388 | 2.97e-144 | 421 |
| MS.gene27811.t1 | AT2G26510 | 57.735 | 362 | 153 | 0 | 1 | 362 | 25 | 386 | 6.52e-142 | 416 |
| MS.gene27811.t1 | AT5G25420 | 42.986 | 442 | 171 | 5 | 5 | 439 | 26 | 393 | 6.65e-123 | 367 |
| MS.gene27811.t1 | AT2G27810 | 35.261 | 536 | 310 | 6 | 20 | 521 | 169 | 701 | 1.32e-102 | 324 |
| MS.gene27811.t1 | AT4G38050 | 35.581 | 534 | 308 | 5 | 20 | 521 | 175 | 704 | 2.98e-99 | 315 |
| MS.gene27811.t1 | AT2G27810 | 33.750 | 560 | 310 | 7 | 20 | 521 | 169 | 725 | 2.81e-97 | 310 |
| MS.gene27811.t1 | AT2G27810 | 36.256 | 422 | 250 | 4 | 20 | 423 | 169 | 589 | 2.32e-82 | 268 |
| MS.gene27811.t1 | AT2G27810 | 36.533 | 375 | 219 | 4 | 20 | 376 | 169 | 542 | 8.80e-71 | 236 |
Find 128 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGCATACAAATTATTT+TGG | 0.101959 | 4.3:-13988539 | MS.gene27811:CDS |
| TAATTTGTTTCAGGTAAATT+TGG | 0.196029 | 4.3:-13986950 | MS.gene27811:intron |
| TTCATTTCTTGTTCCTTCAA+TGG | 0.226954 | 4.3:-13989903 | MS.gene27811:CDS |
| GTAATTACATTAGTTGGTTT+TGG | 0.246380 | 4.3:-13988323 | MS.gene27811:CDS |
| GGTGAATGACTTATCTCTTC+TGG | 0.248677 | 4.3:+13990142 | None:intergenic |
| TTTGATGCTGGGCACTCTTT+TGG | 0.253563 | 4.3:-13987540 | MS.gene27811:CDS |
| TCATAACAACCACAGTGATA+TGG | 0.275276 | 4.3:-13987810 | MS.gene27811:CDS |
| ATTGATTATTGCTGTGTTCT+TGG | 0.284940 | 4.3:-13986313 | MS.gene27811:CDS |
| ATTTCAGAGAATACACTATC+AGG | 0.289187 | 4.3:-13986661 | MS.gene27811:CDS |
| CCATGGCATTCCTCTATCTT+TGG | 0.292772 | 4.3:+13986263 | None:intergenic |
| TTCACCAATGGATCAACTTC+AGG | 0.304968 | 4.3:-13990125 | MS.gene27811:CDS |
| GGACAATACTCTTGACTATA+AGG | 0.306775 | 4.3:-13986292 | MS.gene27811:CDS |
| AAACCAACTAATGTAATTAC+TGG | 0.315074 | 4.3:+13988326 | None:intergenic |
| AAGAATAGAAGATGGTATTC+AGG | 0.318777 | 4.3:+13986349 | None:intergenic |
| ATGATATTCTTTGCAATGTT+AGG | 0.319292 | 4.3:-13987068 | MS.gene27811:intron |
| CTCCTATCACTGTTGGTAAC+CGG | 0.320169 | 4.3:+13988836 | None:intergenic |
| GTGGGGACTTGTGTTGAAAT+TGG | 0.325063 | 4.3:-13988168 | MS.gene27811:CDS |
| AAATATGGGCTATTTGTTCT+AGG | 0.325670 | 4.3:-13988507 | MS.gene27811:intron |
| TCATTTCTTGTTCCTTCAAT+GGG | 0.346165 | 4.3:-13989902 | MS.gene27811:CDS |
| GTGTATTCTCTGAAATATTC+AGG | 0.350685 | 4.3:+13986668 | None:intergenic |
| ATCTCATTTCTTCCGCTCCT+TGG | 0.363626 | 4.3:-13987702 | MS.gene27811:intron |
| TATAGATTCAAATCCATCTT+GGG | 0.371990 | 4.3:-13990089 | MS.gene27811:CDS |
| CTTGTTTGTAGTGTTCTCTC+AGG | 0.378594 | 4.3:-13988130 | MS.gene27811:intron |
| AAAAGAAGGGTCACGAATAA+TGG | 0.387784 | 4.3:+13988783 | None:intergenic |
| TTTGGGATTTAGTCAAATAT+GGG | 0.396617 | 4.3:-13988521 | MS.gene27811:CDS |
| GAGCCGTGGTATCGGTTGGC+AGG | 0.401838 | 4.3:-13987301 | MS.gene27811:CDS |
| GTTCCAGTAATTACATTAGT+TGG | 0.413657 | 4.3:-13988329 | MS.gene27811:CDS |
| TGCCAACACGGTTGCTTCCT+AGG | 0.415342 | 4.3:+13987123 | None:intergenic |
| GGTATCGGTTGGCAGGGAAT+TGG | 0.421613 | 4.3:-13987294 | MS.gene27811:CDS |
| AGGGTTATTCAAGTTTCTGC+TGG | 0.424755 | 4.3:-13987095 | MS.gene27811:CDS |
| GGTGCTCCTACATTTGATGC+TGG | 0.427984 | 4.3:-13987552 | MS.gene27811:CDS |
| TACACTATCAGGGCCTTTCA+TGG | 0.429220 | 4.3:-13986650 | MS.gene27811:CDS |
| TCCCAAAATAATTTGTATGC+TGG | 0.431042 | 4.3:+13988537 | None:intergenic |
| AGAGAGAATGTAGGACTCCT+AGG | 0.436161 | 4.3:-13987140 | MS.gene27811:CDS |
| CATAACAACCACAGTGATAT+GGG | 0.441500 | 4.3:-13987809 | MS.gene27811:CDS |
| TGTTGCAGGATGATAAAGTA+AGG | 0.446203 | 4.3:-13988921 | MS.gene27811:intron |
| GTATAGATTCAAATCCATCT+TGG | 0.446520 | 4.3:-13990090 | MS.gene27811:CDS |
| AGGAGGATCATATGCATTCA+TGG | 0.453580 | 4.3:-13988818 | MS.gene27811:CDS |
| ACATCATTTCCACCCATTGA+AGG | 0.466107 | 4.3:+13989890 | None:intergenic |
| AACATAGTTGTAGGACAGAC+AGG | 0.467914 | 4.3:-13987729 | MS.gene27811:CDS |
| TCACGAATAATGGATACAAT+GGG | 0.468928 | 4.3:+13988793 | None:intergenic |
| TGCTCATACCAAAGCTGGAT+GGG | 0.470991 | 4.3:-13986624 | MS.gene27811:intron |
| TGCAAACACTGTTTGGAACC+CGG | 0.473980 | 4.3:-13988855 | MS.gene27811:CDS |
| AATGATAGATGACCCACAAT+TGG | 0.477393 | 4.3:-13988758 | MS.gene27811:intron |
| TCCTATCACTGTTGGTAACC+GGG | 0.477745 | 4.3:+13988837 | None:intergenic |
| GCCAACCGATACCACGGCTC+AGG | 0.478834 | 4.3:+13987304 | None:intergenic |
| AGAAATGTACTAACCAATTG+TGG | 0.479205 | 4.3:+13988745 | None:intergenic |
| GAATAGACAAGCCTAAGAAA+AGG | 0.479304 | 4.3:+13986690 | None:intergenic |
| GGTCCTGCTCATACCAAAGC+TGG | 0.479360 | 4.3:-13986629 | MS.gene27811:CDS |
| TCACCAATGGATCAACTTCA+GGG | 0.480974 | 4.3:-13990124 | MS.gene27811:CDS |
| GAAACTCACCCATCCAGCTT+TGG | 0.485860 | 4.3:+13986616 | None:intergenic |
| GTACACAGAAACTGTTGAAC+CGG | 0.486278 | 4.3:+13987239 | None:intergenic |
| ACCCGGTTACCAACAGTGAT+AGG | 0.489452 | 4.3:-13988838 | MS.gene27811:CDS |
| ATTGAAGGAACAAGAAATGA+AGG | 0.499359 | 4.3:+13989905 | None:intergenic |
| GCACCCCACTCAAGAGGGTA+TGG | 0.499949 | 4.3:+13987570 | None:intergenic |
| ATGTAACTCAACATAGTTGT+AGG | 0.501947 | 4.3:-13987738 | MS.gene27811:CDS |
| TCATCTATCATTGCAAAAGA+AGG | 0.502196 | 4.3:+13988769 | None:intergenic |
| AAACCCTGAAGTTGATCCAT+TGG | 0.502837 | 4.3:+13990121 | None:intergenic |
| AAGAAGCGGTTGAGATTGAA+AGG | 0.503438 | 4.3:+13986183 | None:intergenic |
| AACCGGTTAGTGTTCCGAAA+AGG | 0.514137 | 4.3:+13987256 | None:intergenic |
| GTGCTCCTACATTTGATGCT+GGG | 0.514731 | 4.3:-13987551 | MS.gene27811:CDS |
| ATGAGGAACCTCTTTATCAC+TGG | 0.516659 | 4.3:-13986719 | MS.gene27811:CDS |
| CATGTCCTGAGCCGTGGTAT+CGG | 0.518412 | 4.3:-13987309 | MS.gene27811:CDS |
| AATAGACAAGCCTAAGAAAA+GGG | 0.522987 | 4.3:+13986691 | None:intergenic |
| TTTCTTGTTCCTTCAATGGG+TGG | 0.525960 | 4.3:-13989899 | MS.gene27811:CDS |
| GCAATAATCAATGCAACAGT+TGG | 0.533111 | 4.3:+13986324 | None:intergenic |
| AAGGACAGTGCCAAAGATAG+AGG | 0.534675 | 4.3:-13986273 | MS.gene27811:CDS |
| TCCTGAGCCGTGGTATCGGT+TGG | 0.538613 | 4.3:-13987305 | MS.gene27811:CDS |
| TATGATCCTCCTATCACTGT+TGG | 0.541705 | 4.3:+13988829 | None:intergenic |
| CCACGGCTCAGGACATGAGC+AGG | 0.543664 | 4.3:+13987315 | None:intergenic |
| CATCCAGCTTTGGTATGAGC+AGG | 0.545272 | 4.3:+13986626 | None:intergenic |
| GAAATGTACTAACCAATTGT+GGG | 0.546919 | 4.3:+13988746 | None:intergenic |
| GAGTGCCCAGCATCAAATGT+AGG | 0.547055 | 4.3:+13987546 | None:intergenic |
| CTGCTCATACCAAAGCTGGA+TGG | 0.547379 | 4.3:-13986625 | MS.gene27811:CDS |
| GTCACGAATAATGGATACAA+TGG | 0.549123 | 4.3:+13988792 | None:intergenic |
| CAGAAACTTGAATAACCCTT+CGG | 0.550365 | 4.3:+13987099 | None:intergenic |
| CTCAGGACATGAGCAGGCGG+TGG | 0.550799 | 4.3:+13987321 | None:intergenic |
| CAACTATGTTGAGTTACATC+CGG | 0.554296 | 4.3:+13987742 | None:intergenic |
| GGGCAACACCAGTGATAAAG+AGG | 0.555822 | 4.3:+13986711 | None:intergenic |
| GACATGAGCAGGCGGTGGTG+TGG | 0.560084 | 4.3:+13987326 | None:intergenic |
| CATGCAAACATACCCCAAGA+TGG | 0.560663 | 4.3:+13990076 | None:intergenic |
| TAACCCTTCGGCTGCCAACA+CGG | 0.560723 | 4.3:+13987111 | None:intergenic |
| ATTTGACAGAGGTTTCCCTA+TGG | 0.567601 | 4.3:-13988297 | MS.gene27811:intron |
| GTTCCTCATTGAATTCATGT+TGG | 0.571510 | 4.3:+13986733 | None:intergenic |
| GCAACCGTGTTGGCAGCCGA+AGG | 0.576172 | 4.3:-13987115 | MS.gene27811:CDS |
| CACTACAAACAAGATTAGCA+TGG | 0.579230 | 4.3:+13988140 | None:intergenic |
| CTCCTAGGAAGCAACCGTGT+TGG | 0.580038 | 4.3:-13987125 | MS.gene27811:CDS |
| TTTCAGAGAATACACTATCA+GGG | 0.580243 | 4.3:-13986660 | MS.gene27811:CDS |
| AGTTGGTGAAGAATAGAAGA+TGG | 0.581474 | 4.3:+13986341 | None:intergenic |
| CCTGCTCATGTCCTGAGCCG+TGG | 0.582782 | 4.3:-13987315 | MS.gene27811:CDS |
| AGCCGTGGTATCGGTTGGCA+GGG | 0.590320 | 4.3:-13987300 | MS.gene27811:CDS |
| GGTATGAGCAGGACCATGAA+AGG | 0.591544 | 4.3:+13986637 | None:intergenic |
| CATCTATCATTGCAAAAGAA+GGG | 0.595562 | 4.3:+13988770 | None:intergenic |
| TTCCCTGCCAACCGATACCA+CGG | 0.595568 | 4.3:+13987298 | None:intergenic |
| ACAGTGGAGACAATACTGCT+TGG | 0.596630 | 4.3:-13989971 | MS.gene27811:intron |
| AGAGCAAATCTCTCTAGTAT+CGG | 0.602160 | 4.3:+13987835 | None:intergenic |
| CATCTTGACAGAGAGAATGT+AGG | 0.602743 | 4.3:-13987149 | MS.gene27811:intron |
| ACTACAAACAAGATTAGCAT+GGG | 0.605867 | 4.3:+13988141 | None:intergenic |
| AGATTCCATACCCTCTTGAG+TGG | 0.607942 | 4.3:-13987575 | MS.gene27811:CDS |
| ATGCTACAATTAGTGCACCT+TGG | 0.608851 | 4.3:+13988560 | None:intergenic |
| TAGGAGCACCCCACTCAAGA+GGG | 0.617390 | 4.3:+13987565 | None:intergenic |
| AGAGATAAGTCATTCACCAA+TGG | 0.619804 | 4.3:-13990137 | MS.gene27811:CDS |
| GCACATCTATTGACAGCGAG+TGG | 0.619907 | 4.3:-13987781 | MS.gene27811:CDS |
| GATTCCATACCCTCTTGAGT+GGG | 0.620879 | 4.3:-13987574 | MS.gene27811:CDS |
| GTAGGAGCACCCCACTCAAG+AGG | 0.622953 | 4.3:+13987564 | None:intergenic |
| AAGATAGAGGAATGCCATGG+TGG | 0.624875 | 4.3:-13986260 | MS.gene27811:CDS |
| TATGTTGAGTTACATCCGGC+CGG | 0.624907 | 4.3:+13987746 | None:intergenic |
| CAACCGTGTTGGCAGCCGAA+GGG | 0.626544 | 4.3:-13987114 | MS.gene27811:CDS |
| AGATAGAGGAATGCCATGGT+GGG | 0.635902 | 4.3:-13986259 | MS.gene27811:CDS |
| GTTGCAGGATGATAAAGTAA+GGG | 0.641584 | 4.3:-13988920 | MS.gene27811:intron |
| TGGAGCATACAAACACCGGC+CGG | 0.643571 | 4.3:-13987761 | MS.gene27811:CDS |
| ATAGATTCAAATCCATCTTG+GGG | 0.643928 | 4.3:-13990088 | MS.gene27811:intron |
| CGGTTACCAACAGTGATAGG+AGG | 0.653551 | 4.3:-13988835 | MS.gene27811:CDS |
| GCAGGATGATAAAGTAAGGG+TGG | 0.654485 | 4.3:-13988917 | MS.gene27811:intron |
| AGCACAATGAGAGCAGTCCA+AGG | 0.659630 | 4.3:-13988577 | MS.gene27811:CDS |
| CGAGTGGAGCATACAAACAC+CGG | 0.663938 | 4.3:-13987765 | MS.gene27811:CDS |
| CGGCTCAGGACATGAGCAGG+CGG | 0.664877 | 4.3:+13987318 | None:intergenic |
| ATTCCATACCCTCTTGAGTG+GGG | 0.671790 | 4.3:-13987573 | MS.gene27811:CDS |
| GTTCTAAACTTAGCCCACCA+TGG | 0.673056 | 4.3:+13986246 | None:intergenic |
| TATTGGTACCAACCAAGGAG+CGG | 0.679674 | 4.3:+13987690 | None:intergenic |
| ATTACTGGAACCATTCCAAG+TGG | 0.685617 | 4.3:+13988341 | None:intergenic |
| CCAAAGATAGAGGAATGCCA+TGG | 0.686802 | 4.3:-13986263 | MS.gene27811:CDS |
| TCACCAACATGAATTCAATG+AGG | 0.689628 | 4.3:-13986736 | MS.gene27811:CDS |
| ACATAGTTGTAGGACAGACA+GGG | 0.696081 | 4.3:-13987728 | MS.gene27811:CDS |
| TCTATGATGGAGGAAAGAAG+CGG | 0.698502 | 4.3:+13986169 | None:intergenic |
| TTACTGGAACCATTCCAAGT+GGG | 0.700944 | 4.3:+13988342 | None:intergenic |
| CACGAATAATGGATACAATG+GGG | 0.733637 | 4.3:+13988794 | None:intergenic |
| TGCATATGCCCATATCACTG+TGG | 0.777461 | 4.3:+13987801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTAAATATATATTTTTGT+TGG | - | chr4.3:13988099-13988118 | MS.gene27811:intron | 10.0% |
| !! | CTTCACAAATATATAAAATA+AGG | + | chr4.3:13987850-13987869 | None:intergenic | 15.0% |
| !!! | ATATGGTTTTCATTTTTTAT+GGG | - | chr4.3:13989135-13989154 | MS.gene27811:intron | 15.0% |
| !! | TAGTTAAAAGAATTGAAGTT+AGG | + | chr4.3:13986472-13986491 | None:intergenic | 20.0% |
| !! | TATCATTGGAAAAATTATAC+CGG | - | chr4.3:13988868-13988887 | MS.gene27811:CDS | 20.0% |
| !! | TCACTAACTATAATTAATAC+AGG | + | chr4.3:13986865-13986884 | None:intergenic | 20.0% |
| !!! | CATATGGTTTTCATTTTTTA+TGG | - | chr4.3:13989134-13989153 | MS.gene27811:intron | 20.0% |
| !!! | TAATTTGTTTCAGGTAAATT+TGG | - | chr4.3:13989377-13989396 | MS.gene27811:intron | 20.0% |
| !!! | TATAATTAATACAGGTGTTT+TGG | + | chr4.3:13986857-13986876 | None:intergenic | 20.0% |
| !!! | TATTTTCTTTTTATCGTGTT+TGG | - | chr4.3:13987239-13987258 | MS.gene27811:intron | 20.0% |
| !!! | TATTTTTGATAAGATGCAAA+GGG | - | chr4.3:13987206-13987225 | MS.gene27811:intron | 20.0% |
| !!! | TGGTTTTCAACATTATATTT+TGG | - | chr4.3:13986376-13986395 | MS.gene27811:intron | 20.0% |
| !!! | TTATTTTTGATAAGATGCAA+AGG | - | chr4.3:13987205-13987224 | MS.gene27811:intron | 20.0% |
| !!! | TTTAAGTTTAAATTAGCTTG+TGG | - | chr4.3:13988252-13988271 | MS.gene27811:intron | 20.0% |
| !!! | TTTTCTTATTCTCATTCATA+TGG | - | chr4.3:13989118-13989137 | MS.gene27811:intron | 20.0% |
| ! | AAACCAACTAATGTAATTAC+TGG | + | chr4.3:13988004-13988023 | None:intergenic | 25.0% |
| ! | AAATACCCATGACTATTTAT+TGG | - | chr4.3:13987045-13987064 | MS.gene27811:intron | 25.0% |
| ! | AGTATATAGCAGCAAAAATA+GGG | + | chr4.3:13989427-13989446 | None:intergenic | 25.0% |
| ! | ATGATATTCTTTGCAATGTT+AGG | - | chr4.3:13989259-13989278 | MS.gene27811:intron | 25.0% |
| ! | ATTGATCCAAACACAATAAA+AGG | + | chr4.3:13986591-13986610 | None:intergenic | 25.0% |
| ! | CAAAGAAAATATTGAGCTAT+TGG | - | chr4.3:13988696-13988715 | MS.gene27811:intron | 25.0% |
| ! | CAACACATCATAATACATTA+AGG | + | chr4.3:13988435-13988454 | None:intergenic | 25.0% |
| ! | CTTCATAAAATGACTATCAT+TGG | - | chr4.3:13988854-13988873 | MS.gene27811:CDS | 25.0% |
| ! | TATAGATTCAAATCCATCTT+GGG | - | chr4.3:13986238-13986257 | MS.gene27811:CDS | 25.0% |
| ! | TCTATCCAATAAATAGTCAT+GGG | + | chr4.3:13987053-13987072 | None:intergenic | 25.0% |
| ! | TGAAACAAATTATGAAACAC+AGG | + | chr4.3:13989369-13989388 | None:intergenic | 25.0% |
| ! | TTGATCCAAACACAATAAAA+GGG | + | chr4.3:13986590-13986609 | None:intergenic | 25.0% |
| !! | AGCATCTATTGATAATTGTT+TGG | - | chr4.3:13989502-13989521 | MS.gene27811:intron | 25.0% |
| !! | ATCCAGCATACAAATTATTT+TGG | - | chr4.3:13987788-13987807 | MS.gene27811:CDS | 25.0% |
| !! | TAATTCCCTTTTATTGTGTT+TGG | - | chr4.3:13986582-13986601 | MS.gene27811:intron | 25.0% |
| !! | TCCAGCATACAAATTATTTT+GGG | - | chr4.3:13987789-13987808 | MS.gene27811:CDS | 25.0% |
| !! | TGAATTTTACACTGTTGTTA+AGG | - | chr4.3:13986785-13986804 | MS.gene27811:intron | 25.0% |
| !! | TTTGGGATTTAGTCAAATAT+GGG | - | chr4.3:13987806-13987825 | MS.gene27811:CDS | 25.0% |
| !!! | ATATTTTTTTCAGCTTCTGT+AGG | - | chr4.3:13989551-13989570 | MS.gene27811:intron | 25.0% |
| !!! | ATTTTTTTTGTCTTGTGTAC+TGG | - | chr4.3:13987265-13987284 | MS.gene27811:CDS | 25.0% |
| !!! | CAACATTATATTTTGGCATT+AGG | - | chr4.3:13986383-13986402 | MS.gene27811:intron | 25.0% |
| !!! | CTACTTTGATTTGATTTTGA+TGG | - | chr4.3:13987166-13987185 | MS.gene27811:intron | 25.0% |
| !!! | GTAATTACATTAGTTGGTTT+TGG | - | chr4.3:13988004-13988023 | MS.gene27811:intron | 25.0% |
| !!! | TATTTTTTTCAGCTTCTGTA+GGG | - | chr4.3:13989552-13989571 | MS.gene27811:intron | 25.0% |
| !!! | TGGATCAATGTTTTAACAAT+CGG | - | chr4.3:13986602-13986621 | MS.gene27811:intron | 25.0% |
| !!! | TGTGTTTCATAATTTGTTTC+AGG | - | chr4.3:13989368-13989387 | MS.gene27811:intron | 25.0% |
| !!! | TTATTATTTTGACAGTCAAC+TGG | - | chr4.3:13988946-13988965 | MS.gene27811:intron | 25.0% |
| !!! | TTTGTCTATTGGTTTAATCA+TGG | - | chr4.3:13986713-13986732 | MS.gene27811:CDS | 25.0% |
| !!! | TTTTGGGATTTAGTCAAATA+TGG | - | chr4.3:13987805-13987824 | MS.gene27811:CDS | 25.0% |
| AAAATCTGCATGAAAGGAAA+AGG | + | chr4.3:13987961-13987980 | None:intergenic | 30.0% | |
| AAACCAATAGACAAACTAGT+AGG | + | chr4.3:13986708-13986727 | None:intergenic | 30.0% | |
| AACTGGTTGAATTGGAAATT+GGG | - | chr4.3:13986656-13986675 | MS.gene27811:CDS | 30.0% | |
| AAGAATAGAAGATGGTATTC+AGG | + | chr4.3:13989981-13990000 | None:intergenic | 30.0% | |
| AATAGACAAGCCTAAGAAAA+GGG | + | chr4.3:13989639-13989658 | None:intergenic | 30.0% | |
| ACTACAAACAAGATTAGCAT+GGG | + | chr4.3:13988189-13988208 | None:intergenic | 30.0% | |
| AGAAATGTACTAACCAATTG+TGG | + | chr4.3:13987585-13987604 | None:intergenic | 30.0% | |
| AGATGCTGAAGTAAATTCAA+AGG | + | chr4.3:13989489-13989508 | None:intergenic | 30.0% | |
| AGTTGAATCAGATTGAATAG+TGG | - | chr4.3:13986750-13986769 | MS.gene27811:CDS | 30.0% | |
| ATAGATTCAAATCCATCTTG+GGG | - | chr4.3:13986239-13986258 | MS.gene27811:CDS | 30.0% | |
| ATGTAACTCAACATAGTTGT+AGG | - | chr4.3:13988589-13988608 | MS.gene27811:CDS | 30.0% | |
| ATTGAAGGAACAAGAAATGA+AGG | + | chr4.3:13986425-13986444 | None:intergenic | 30.0% | |
| ATTGATTATTGCTGTGTTCT+TGG | - | chr4.3:13990014-13990033 | MS.gene27811:intron | 30.0% | |
| ATTTCAGAGAATACACTATC+AGG | - | chr4.3:13989666-13989685 | MS.gene27811:intron | 30.0% | |
| CAGTATATAGCAGCAAAAAT+AGG | + | chr4.3:13989428-13989447 | None:intergenic | 30.0% | |
| CATATATTGCTTATTGTTGC+AGG | - | chr4.3:13987392-13987411 | MS.gene27811:intron | 30.0% | |
| CATCTATCATTGCAAAAGAA+GGG | + | chr4.3:13987560-13987579 | None:intergenic | 30.0% | |
| CATGACTATTTATTGGATAG+AGG | - | chr4.3:13987052-13987071 | MS.gene27811:intron | 30.0% | |
| CTCTATCCAATAAATAGTCA+TGG | + | chr4.3:13987054-13987073 | None:intergenic | 30.0% | |
| GAAATGTACTAACCAATTGT+GGG | + | chr4.3:13987584-13987603 | None:intergenic | 30.0% | |
| GACAATGAAAAATACTAGCA+AGG | - | chr4.3:13986981-13987000 | MS.gene27811:intron | 30.0% | |
| GATGCTGAAGTAAATTCAAA+GGG | + | chr4.3:13989488-13989507 | None:intergenic | 30.0% | |
| GTAACAAATTGAACAGAAAG+AGG | + | chr4.3:13988388-13988407 | None:intergenic | 30.0% | |
| GTATAGATTCAAATCCATCT+TGG | - | chr4.3:13986237-13986256 | MS.gene27811:CDS | 30.0% | |
| GTATGTTTAACAGGTTGTAA+CGG | - | chr4.3:13986679-13986698 | MS.gene27811:CDS | 30.0% | |
| GTTCCAGTAATTACATTAGT+TGG | - | chr4.3:13987998-13988017 | MS.gene27811:intron | 30.0% | |
| TATATGTCAAATAACTGGAC+TGG | - | chr4.3:13988220-13988239 | MS.gene27811:intron | 30.0% | |
| TCAGGTATATGTCAAATAAC+TGG | - | chr4.3:13988215-13988234 | MS.gene27811:intron | 30.0% | |
| TCATCTATCATTGCAAAAGA+AGG | + | chr4.3:13987561-13987580 | None:intergenic | 30.0% | |
| TCATTCATTCAAACCTATTC+AGG | + | chr4.3:13988412-13988431 | None:intergenic | 30.0% | |
| TCATTGAACTGCAAAATCAA+AGG | + | chr4.3:13989955-13989974 | None:intergenic | 30.0% | |
| TCATTTCTTGTTCCTTCAAT+GGG | - | chr4.3:13986425-13986444 | MS.gene27811:intron | 30.0% | |
| TGAATATCAATCCTCTATCT+TGG | + | chr4.3:13987374-13987393 | None:intergenic | 30.0% | |
| TTCATTTCTTGTTCCTTCAA+TGG | - | chr4.3:13986424-13986443 | MS.gene27811:intron | 30.0% | |
| TTTCAGAGAATACACTATCA+GGG | - | chr4.3:13989667-13989686 | MS.gene27811:intron | 30.0% | |
| ! | AAATATGGGCTATTTGTTCT+AGG | - | chr4.3:13987820-13987839 | MS.gene27811:CDS | 30.0% |
| ! | GATAATTGTTTGGTCTTCTT+TGG | - | chr4.3:13989512-13989531 | MS.gene27811:intron | 30.0% |
| ! | TAACCTACTAGTTTGTCTAT+TGG | - | chr4.3:13986702-13986721 | MS.gene27811:CDS | 30.0% |
| ! | TCCCAAAATAATTTGTATGC+TGG | + | chr4.3:13987793-13987812 | None:intergenic | 30.0% |
| !! | GCTATATACTGTGTTTTGTT+TGG | - | chr4.3:13989437-13989456 | MS.gene27811:intron | 30.0% |
| !! | GTGTATTCTCTGAAATATTC+AGG | + | chr4.3:13989662-13989681 | None:intergenic | 30.0% |
| !! | GTGTTTTGAATTGTTAACAG+TGG | - | chr4.3:13986340-13986359 | MS.gene27811:CDS | 30.0% |
| !! | TCAATTTGTTACACCTGAAT+AGG | - | chr4.3:13988396-13988415 | MS.gene27811:intron | 30.0% |
| !! | TCACGAATAATGGATACAAT+GGG | + | chr4.3:13987537-13987556 | None:intergenic | 30.0% |
| !! | TTAAATTAGCTTGTGGAATG+TGG | - | chr4.3:13988259-13988278 | MS.gene27811:intron | 30.0% |
| !! | TTGATTTTGATGGATGATAC+TGG | - | chr4.3:13987176-13987195 | MS.gene27811:intron | 30.0% |
| !!! | CAAACTCTACTTTTTGTTGA+AGG | - | chr4.3:13987435-13987454 | MS.gene27811:intron | 30.0% |
| !!! | GTTTTCATTTTTTATGGGAC+AGG | - | chr4.3:13989140-13989159 | MS.gene27811:intron | 30.0% |
| !!! | TGTTTTAGTCTCATTAGTTG+AGG | - | chr4.3:13988822-13988841 | MS.gene27811:CDS | 30.0% |
| AAAAGAAGGGTCACGAATAA+TGG | + | chr4.3:13987547-13987566 | None:intergenic | 35.0% | |
| AATGATAGATGACCCACAAT+TGG | - | chr4.3:13987569-13987588 | MS.gene27811:CDS | 35.0% | |
| ACTGGTTGAATTGGAAATTG+GGG | - | chr4.3:13986657-13986676 | MS.gene27811:CDS | 35.0% | |
| AGAGATAAGTCATTCACCAA+TGG | - | chr4.3:13986190-13986209 | MS.gene27811:CDS | 35.0% | |
| AGAGCAAATCTCTCTAGTAT+CGG | + | chr4.3:13988495-13988514 | None:intergenic | 35.0% | |
| ATAGCAGCAAAAATAGGGAA+TGG | + | chr4.3:13989422-13989441 | None:intergenic | 35.0% | |
| ATTTCCTTCTTTCTTGCTCT+AGG | + | chr4.3:13988347-13988366 | None:intergenic | 35.0% | |
| CAACTATGTTGAGTTACATC+CGG | + | chr4.3:13988588-13988607 | None:intergenic | 35.0% | |
| CAACTGGTTGAATTGGAAAT+TGG | - | chr4.3:13986655-13986674 | MS.gene27811:CDS | 35.0% | |
| CACTACAAACAAGATTAGCA+TGG | + | chr4.3:13988190-13988209 | None:intergenic | 35.0% | |
| CAGAAACTTGAATAACCCTT+CGG | + | chr4.3:13989231-13989250 | None:intergenic | 35.0% | |
| CAGTGTTGTACTATACCATA+GGG | + | chr4.3:13988048-13988067 | None:intergenic | 35.0% | |
| CATAACAACCACAGTGATAT+GGG | - | chr4.3:13988518-13988537 | MS.gene27811:CDS | 35.0% | |
| CTCTATGCAAATCTCTACTT+AGG | - | chr4.3:13986549-13986568 | MS.gene27811:intron | 35.0% | |
| GAAATTGGGGTATGTTTAAC+AGG | - | chr4.3:13986670-13986689 | MS.gene27811:CDS | 35.0% | |
| GAATAGACAAGCCTAAGAAA+AGG | + | chr4.3:13989640-13989659 | None:intergenic | 35.0% | |
| GCAATAATCAATGCAACAGT+TGG | + | chr4.3:13990006-13990025 | None:intergenic | 35.0% | |
| GGACAATACTCTTGACTATA+AGG | - | chr4.3:13990035-13990054 | MS.gene27811:intron | 35.0% | |
| GTTCCTCATTGAATTCATGT+TGG | + | chr4.3:13989597-13989616 | None:intergenic | 35.0% | |
| GTTGCAGGATGATAAAGTAA+GGG | - | chr4.3:13987407-13987426 | MS.gene27811:intron | 35.0% | |
| TAGGTGAGTGGCAAATTATA+GGG | - | chr4.3:13989278-13989297 | MS.gene27811:intron | 35.0% | |
| TCACCAACATGAATTCAATG+AGG | - | chr4.3:13989591-13989610 | MS.gene27811:intron | 35.0% | |
| TCAGTGTTGTACTATACCAT+AGG | + | chr4.3:13988049-13988068 | None:intergenic | 35.0% | |
| TCATAACAACCACAGTGATA+TGG | - | chr4.3:13988517-13988536 | MS.gene27811:CDS | 35.0% | |
| TGTTGCAGGATGATAAAGTA+AGG | - | chr4.3:13987406-13987425 | MS.gene27811:intron | 35.0% | |
| TTAGGTGAGTGGCAAATTAT+AGG | - | chr4.3:13989277-13989296 | MS.gene27811:intron | 35.0% | |
| TTCAGTTCAACTGGTTGAAT+TGG | - | chr4.3:13986648-13986667 | MS.gene27811:CDS | 35.0% | |
| TTGTCACATGCTAAATGAAG+TGG | - | chr4.3:13987291-13987310 | MS.gene27811:CDS | 35.0% | |
| ! | ACACTTTTGCAAACACTGTT+TGG | - | chr4.3:13987465-13987484 | MS.gene27811:intron | 35.0% |
| ! | ATTTTGCTGAATGGCCTTTT+CGG | - | chr4.3:13989057-13989076 | MS.gene27811:intron | 35.0% |
| ! | GGAATTGGAATTTTGCTGAA+TGG | - | chr4.3:13989048-13989067 | MS.gene27811:intron | 35.0% |
| !! | AGTTGGTGAAGAATAGAAGA+TGG | + | chr4.3:13989989-13990008 | None:intergenic | 35.0% |
| !! | CACGAATAATGGATACAATG+GGG | + | chr4.3:13987536-13987555 | None:intergenic | 35.0% |
| !! | GTCACGAATAATGGATACAA+TGG | + | chr4.3:13987538-13987557 | None:intergenic | 35.0% |
| !! | GTCTATTGGTTTAATCATGG+TGG | - | chr4.3:13986716-13986735 | MS.gene27811:CDS | 35.0% |
| !!! | GGTTTTGGATTATTTGACAG+AGG | - | chr4.3:13988019-13988038 | MS.gene27811:intron | 35.0% |
| !!! | TGTGTTTTGTTTGGTCTTGT+AGG | - | chr4.3:13989446-13989465 | MS.gene27811:intron | 35.0% |
| AAAGCCTAGAGCAAGAAAGA+AGG | - | chr4.3:13988340-13988359 | MS.gene27811:CDS | 40.0% | |
| AACATAGTTGTAGGACAGAC+AGG | - | chr4.3:13988598-13988617 | MS.gene27811:intron | 40.0% | |
| AAGAAGCGGTTGAGATTGAA+AGG | + | chr4.3:13990147-13990166 | None:intergenic | 40.0% | |
| ACATAGTTGTAGGACAGACA+GGG | - | chr4.3:13988599-13988618 | MS.gene27811:intron | 40.0% | |
| ACATCATTTCCACCCATTGA+AGG | + | chr4.3:13986440-13986459 | None:intergenic | 40.0% | |
| AGGAGGATCATATGCATTCA+TGG | - | chr4.3:13987509-13987528 | MS.gene27811:CDS | 40.0% | |
| ATCATATCTCATCTCGTCTC+AGG | - | chr4.3:13989758-13989777 | MS.gene27811:intron | 40.0% | |
| ATGAGGAACCTCTTTATCAC+TGG | - | chr4.3:13989608-13989627 | MS.gene27811:intron | 40.0% | |
| ATGCTACAATTAGTGCACCT+TGG | + | chr4.3:13987770-13987789 | None:intergenic | 40.0% | |
| ATTACTGGAACCATTCCAAG+TGG | + | chr4.3:13987989-13988008 | None:intergenic | 40.0% | |
| ATTTGACAGAGGTTTCCCTA+TGG | - | chr4.3:13988030-13988049 | MS.gene27811:intron | 40.0% | |
| CACATGCTAAATGAAGTGGT+GGG | - | chr4.3:13987295-13987314 | MS.gene27811:CDS | 40.0% | |
| CATCTTGACAGAGAGAATGT+AGG | - | chr4.3:13989178-13989197 | MS.gene27811:intron | 40.0% | |
| CCTCAAACTTACCAAGATAG+AGG | - | chr4.3:13987360-13987379 | MS.gene27811:CDS | 40.0% | |
| CCTCTATCTTGGTAAGTTTG+AGG | + | chr4.3:13987363-13987382 | None:intergenic | 40.0% | |
| CTTGTTTGTAGTGTTCTCTC+AGG | - | chr4.3:13988197-13988216 | MS.gene27811:intron | 40.0% | |
| GAATACAAGTACAAGTCACG+TGG | + | chr4.3:13988074-13988093 | None:intergenic | 40.0% | |
| GAGATACACAAACATGGAAG+AGG | + | chr4.3:13987718-13987737 | None:intergenic | 40.0% | |
| GGCTGAAAAATCTGCATGAA+AGG | + | chr4.3:13987967-13987986 | None:intergenic | 40.0% | |
| GGTGAATGACTTATCTCTTC+TGG | + | chr4.3:13986188-13986207 | None:intergenic | 40.0% | |
| GTACACAGAAACTGTTGAAC+CGG | + | chr4.3:13989091-13989110 | None:intergenic | 40.0% | |
| TATGATCCTCCTATCACTGT+TGG | + | chr4.3:13987501-13987520 | None:intergenic | 40.0% | |
| TCACATGCTAAATGAAGTGG+TGG | - | chr4.3:13987294-13987313 | MS.gene27811:CDS | 40.0% | |
| TCACCAATGGATCAACTTCA+GGG | - | chr4.3:13986203-13986222 | MS.gene27811:CDS | 40.0% | |
| TCATATCTCATCTCGTCTCA+GGG | - | chr4.3:13989759-13989778 | MS.gene27811:intron | 40.0% | |
| TCATTGTGCTAAGAAACCTC+TGG | + | chr4.3:13987740-13987759 | None:intergenic | 40.0% | |
| TCTCCCAAAAGAGGAAAATC+TGG | - | chr4.3:13987318-13987337 | MS.gene27811:CDS | 40.0% | |
| TCTTTGCAATGTTAGGTGAG+TGG | - | chr4.3:13989266-13989285 | MS.gene27811:intron | 40.0% | |
| TGTGTGTTACGTAAGCATAC+CGG | + | chr4.3:13988890-13988909 | None:intergenic | 40.0% | |
| TTACTGGAACCATTCCAAGT+GGG | + | chr4.3:13987988-13988007 | None:intergenic | 40.0% | |
| TTCACCAATGGATCAACTTC+AGG | - | chr4.3:13986202-13986221 | MS.gene27811:CDS | 40.0% | |
| TTCGACAACAACGATGCTAT+TGG | + | chr4.3:13988657-13988676 | None:intergenic | 40.0% | |
| TTTCTTGTTCCTTCAATGGG+TGG | - | chr4.3:13986428-13986447 | MS.gene27811:intron | 40.0% | |
| ! | AAACCCTGAAGTTGATCCAT+TGG | + | chr4.3:13986209-13986228 | None:intergenic | 40.0% |
| ! | AGGGTTATTCAAGTTTCTGC+TGG | - | chr4.3:13989232-13989251 | MS.gene27811:intron | 40.0% |
| ! | CCACCAGATTTTCCTCTTTT+GGG | + | chr4.3:13987324-13987343 | None:intergenic | 40.0% |
| ! | TCCACCAGATTTTCCTCTTT+TGG | + | chr4.3:13987325-13987344 | None:intergenic | 40.0% |
| !! | ATTTTTCAGCCCACTTGGAA+TGG | - | chr4.3:13987976-13987995 | MS.gene27811:intron | 40.0% |
| !! | CATTGACTCTTGACACATGT+TGG | - | chr4.3:13988719-13988738 | MS.gene27811:intron | 40.0% |
| AACCGGTTAGTGTTCCGAAA+AGG | + | chr4.3:13989074-13989093 | None:intergenic | 45.0% | |
| AAGATAGAGGAATGCCATGG+TGG | - | chr4.3:13990067-13990086 | MS.gene27811:intron | 45.0% | |
| AAGGACAGTGCCAAAGATAG+AGG | - | chr4.3:13990054-13990073 | MS.gene27811:intron | 45.0% | |
| ACAGTGGAGACAATACTGCT+TGG | - | chr4.3:13986356-13986375 | MS.gene27811:CDS | 45.0% | |
| ACCAGTCAGTTCAGTTCAAC+TGG | - | chr4.3:13986639-13986658 | MS.gene27811:CDS | 45.0% | |
| ACCAGTTGAACTGAACTGAC+TGG | + | chr4.3:13986643-13986662 | None:intergenic | 45.0% | |
| AGAGAGAATGTAGGACTCCT+AGG | - | chr4.3:13989187-13989206 | MS.gene27811:intron | 45.0% | |
| AGATAGAGGAATGCCATGGT+GGG | - | chr4.3:13990068-13990087 | MS.gene27811:intron | 45.0% | |
| AGATTCCATACCCTCTTGAG+TGG | - | chr4.3:13988752-13988771 | MS.gene27811:intron | 45.0% | |
| ATCTCATTTCTTCCGCTCCT+TGG | - | chr4.3:13988625-13988644 | MS.gene27811:intron | 45.0% | |
| ATGCTGTTCTGTCCTTTCTC+AGG | - | chr4.3:13988137-13988156 | MS.gene27811:CDS | 45.0% | |
| ATTCCATACCCTCTTGAGTG+GGG | - | chr4.3:13988754-13988773 | MS.gene27811:intron | 45.0% | |
| CATATCTCATCTCGTCTCAG+GGG | - | chr4.3:13989760-13989779 | MS.gene27811:intron | 45.0% | |
| CATGCAAACATACCCCAAGA+TGG | + | chr4.3:13986254-13986273 | None:intergenic | 45.0% | |
| CCAAAGATAGAGGAATGCCA+TGG | - | chr4.3:13990064-13990083 | MS.gene27811:intron | 45.0% | |
| CCATGGCATTCCTCTATCTT+TGG | + | chr4.3:13990067-13990086 | None:intergenic | 45.0% | |
| CCATGTTTGTGTATCTCCAG+AGG | - | chr4.3:13987721-13987740 | MS.gene27811:CDS | 45.0% | |
| CCCAAAAGAGGAAAATCTGG+TGG | - | chr4.3:13987321-13987340 | MS.gene27811:CDS | 45.0% | |
| GATGCTATTGGTACCAACCA+AGG | + | chr4.3:13988645-13988664 | None:intergenic | 45.0% | |
| GATTCCATACCCTCTTGAGT+GGG | - | chr4.3:13988753-13988772 | MS.gene27811:intron | 45.0% | |
| GCAGGATGATAAAGTAAGGG+TGG | - | chr4.3:13987410-13987429 | MS.gene27811:intron | 45.0% | |
| GTGCTCCTACATTTGATGCT+GGG | - | chr4.3:13988776-13988795 | MS.gene27811:CDS | 45.0% | |
| GTGGGGACTTGTGTTGAAAT+TGG | - | chr4.3:13988159-13988178 | MS.gene27811:CDS | 45.0% | |
| TACACTATCAGGGCCTTTCA+TGG | - | chr4.3:13989677-13989696 | MS.gene27811:intron | 45.0% | |
| TATGTTGAGTTACATCCGGC+CGG | + | chr4.3:13988584-13988603 | None:intergenic | 45.0% | |
| TATTGGTACCAACCAAGGAG+CGG | + | chr4.3:13988640-13988659 | None:intergenic | 45.0% | |
| TGCATATGCCCATATCACTG+TGG | + | chr4.3:13988529-13988548 | None:intergenic | 45.0% | |
| TGCTCATACCAAAGCTGGAT+GGG | - | chr4.3:13989703-13989722 | MS.gene27811:intron | 45.0% | |
| TGTTCTGTCCTTTCTCAGGT+GGG | - | chr4.3:13988141-13988160 | MS.gene27811:CDS | 45.0% | |
| ! | CCTCTGGAGATACACAAACA+TGG | + | chr4.3:13987724-13987743 | None:intergenic | 45.0% |
| ! | GTTCTAAACTTAGCCCACCA+TGG | + | chr4.3:13990084-13990103 | None:intergenic | 45.0% |
| ! | TGCAAACACTGTTTGGAACC+CGG | - | chr4.3:13987472-13987491 | MS.gene27811:intron | 45.0% |
| ! | TTTGATGCTGGGCACTCTTT+TGG | - | chr4.3:13988787-13988806 | MS.gene27811:CDS | 45.0% |
| !! | CTCCTATCACTGTTGGTAAC+CGG | + | chr4.3:13987494-13987513 | None:intergenic | 45.0% |
| !! | TCCTATCACTGTTGGTAACC+GGG | + | chr4.3:13987493-13987512 | None:intergenic | 45.0% |
| !! | TGCAGATTTTTCAGCCCACT+TGG | - | chr4.3:13987971-13987990 | MS.gene27811:intron | 45.0% |
| !!! | ACTGGTGTTGCCCTTTTCTT+AGG | - | chr4.3:13989626-13989645 | MS.gene27811:intron | 45.0% |
| !!! | TGGGCACTCTTTTGGAATGA+TGG | - | chr4.3:13988795-13988814 | MS.gene27811:CDS | 45.0% |
| ACCCGGTTACCAACAGTGAT+AGG | - | chr4.3:13987489-13987508 | MS.gene27811:intron | 50.0% | |
| AGCACAATGAGAGCAGTCCA+AGG | - | chr4.3:13987750-13987769 | MS.gene27811:CDS | 50.0% | |
| CATTTCTTCCGCTCCTTGGT+TGG | - | chr4.3:13988629-13988648 | MS.gene27811:intron | 50.0% | |
| CGAGTGGAGCATACAAACAC+CGG | - | chr4.3:13988562-13988581 | MS.gene27811:CDS | 50.0% | |
| CGGTTACCAACAGTGATAGG+AGG | - | chr4.3:13987492-13987511 | MS.gene27811:intron | 50.0% | |
| CTCTTGACACATGTTGGTGC+AGG | - | chr4.3:13988725-13988744 | MS.gene27811:intron | 50.0% | |
| CTGCTCATACCAAAGCTGGA+TGG | - | chr4.3:13989702-13989721 | MS.gene27811:intron | 50.0% | |
| CTGTTCTGTCCTTTCTCAGG+TGG | - | chr4.3:13988140-13988159 | MS.gene27811:CDS | 50.0% | |
| GAAACTCACCCATCCAGCTT+TGG | + | chr4.3:13989714-13989733 | None:intergenic | 50.0% | |
| GAGTGCCCAGCATCAAATGT+AGG | + | chr4.3:13988784-13988803 | None:intergenic | 50.0% | |
| GCACATCTATTGACAGCGAG+TGG | - | chr4.3:13988546-13988565 | MS.gene27811:CDS | 50.0% | |
| GGGCAACACCAGTGATAAAG+AGG | + | chr4.3:13989619-13989638 | None:intergenic | 50.0% | |
| GGTATGAGCAGGACCATGAA+AGG | + | chr4.3:13989693-13989712 | None:intergenic | 50.0% | |
| GGTGCTCCTACATTTGATGC+TGG | - | chr4.3:13988775-13988794 | MS.gene27811:CDS | 50.0% | |
| GTTCTGTCCTTTCTCAGGTG+GGG | - | chr4.3:13988142-13988161 | MS.gene27811:CDS | 50.0% | |
| ! | CATCCAGCTTTGGTATGAGC+AGG | + | chr4.3:13989704-13989723 | None:intergenic | 50.0% |
| ! | GGCCTTTTCGGAACACTAAC+CGG | - | chr4.3:13989069-13989088 | MS.gene27811:intron | 50.0% |
| !! | ACTGACTGGTTCGACTCGTT+CGG | + | chr4.3:13986629-13986648 | None:intergenic | 50.0% |
| CACAAGTCCCCACCTGAGAA+AGG | + | chr4.3:13988152-13988171 | None:intergenic | 55.0% | |
| CATGTCCTGAGCCGTGGTAT+CGG | - | chr4.3:13989018-13989037 | MS.gene27811:intron | 55.0% | |
| CTCCTAGGAAGCAACCGTGT+TGG | - | chr4.3:13989202-13989221 | MS.gene27811:intron | 55.0% | |
| GGTCCTGCTCATACCAAAGC+TGG | - | chr4.3:13989698-13989717 | MS.gene27811:intron | 55.0% | |
| TAACCCTTCGGCTGCCAACA+CGG | + | chr4.3:13989219-13989238 | None:intergenic | 55.0% | |
| TGCCAACACGGTTGCTTCCT+AGG | + | chr4.3:13989207-13989226 | None:intergenic | 55.0% | |
| TGGAGCATACAAACACCGGC+CGG | - | chr4.3:13988566-13988585 | MS.gene27811:CDS | 55.0% | |
| TTCCCTGCCAACCGATACCA+CGG | + | chr4.3:13989032-13989051 | None:intergenic | 55.0% | |
| !! | AGTGGTGGGTCTCCCAAAAG+AGG | - | chr4.3:13987309-13987328 | MS.gene27811:CDS | 55.0% |
| !! | GGTATCGGTTGGCAGGGAAT+TGG | - | chr4.3:13989033-13989052 | MS.gene27811:intron | 55.0% |
| !! | TAGGAGCACCCCACTCAAGA+GGG | + | chr4.3:13988765-13988784 | None:intergenic | 55.0% |
| GCACCCCACTCAAGAGGGTA+TGG | + | chr4.3:13988760-13988779 | None:intergenic | 60.0% | |
| ! | CAACCGTGTTGGCAGCCGAA+GGG | - | chr4.3:13989213-13989232 | MS.gene27811:intron | 60.0% |
| !! | AGCCGTGGTATCGGTTGGCA+GGG | - | chr4.3:13989027-13989046 | MS.gene27811:intron | 60.0% |
| !! | GTAGGAGCACCCCACTCAAG+AGG | + | chr4.3:13988766-13988785 | None:intergenic | 60.0% |
| !! | TCCTGAGCCGTGGTATCGGT+TGG | - | chr4.3:13989022-13989041 | MS.gene27811:intron | 60.0% |
| CCACGGCTCAGGACATGAGC+AGG | + | chr4.3:13989015-13989034 | None:intergenic | 65.0% | |
| CCTGCTCATGTCCTGAGCCG+TGG | - | chr4.3:13989012-13989031 | MS.gene27811:intron | 65.0% | |
| CGGCTCAGGACATGAGCAGG+CGG | + | chr4.3:13989012-13989031 | None:intergenic | 65.0% | |
| CTCAGGACATGAGCAGGCGG+TGG | + | chr4.3:13989009-13989028 | None:intergenic | 65.0% | |
| GACATGAGCAGGCGGTGGTG+TGG | + | chr4.3:13989004-13989023 | None:intergenic | 65.0% | |
| GCCAACCGATACCACGGCTC+AGG | + | chr4.3:13989026-13989045 | None:intergenic | 65.0% | |
| ! | GCAACCGTGTTGGCAGCCGA+AGG | - | chr4.3:13989212-13989231 | MS.gene27811:intron | 65.0% |
| !! | GAGCCGTGGTATCGGTTGGC+AGG | - | chr4.3:13989026-13989045 | MS.gene27811:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13986170 | 13990179 | 13986170 | ID=MS.gene27811 |
| chr4.3 | mRNA | 13986170 | 13990179 | 13986170 | ID=MS.gene27811.t1;Parent=MS.gene27811 |
| chr4.3 | exon | 13990089 | 13990179 | 13990089 | ID=MS.gene27811.t1.exon1;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13990089 | 13990179 | 13990089 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13989892 | 13989989 | 13989892 | ID=MS.gene27811.t1.exon2;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13989892 | 13989989 | 13989892 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13988759 | 13988935 | 13988759 | ID=MS.gene27811.t1.exon3;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13988759 | 13988935 | 13988759 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13988508 | 13988608 | 13988508 | ID=MS.gene27811.t1.exon4;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13988508 | 13988608 | 13988508 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13988298 | 13988373 | 13988298 | ID=MS.gene27811.t1.exon5;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13988298 | 13988373 | 13988298 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13988131 | 13988190 | 13988131 | ID=MS.gene27811.t1.exon6;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13988131 | 13988190 | 13988131 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13987703 | 13987887 | 13987703 | ID=MS.gene27811.t1.exon7;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13987703 | 13987887 | 13987703 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13987506 | 13987602 | 13987506 | ID=MS.gene27811.t1.exon8;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13987506 | 13987602 | 13987506 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13987243 | 13987388 | 13987243 | ID=MS.gene27811.t1.exon9;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13987243 | 13987388 | 13987243 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13987069 | 13987160 | 13987069 | ID=MS.gene27811.t1.exon10;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13987069 | 13987160 | 13987069 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13986882 | 13986959 | 13986882 | ID=MS.gene27811.t1.exon11;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13986882 | 13986959 | 13986882 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13986625 | 13986785 | 13986625 | ID=MS.gene27811.t1.exon12;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13986625 | 13986785 | 13986625 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| chr4.3 | exon | 13986170 | 13986382 | 13986170 | ID=MS.gene27811.t1.exon13;Parent=MS.gene27811.t1 |
| chr4.3 | CDS | 13986170 | 13986382 | 13986170 | ID=cds.MS.gene27811.t1;Parent=MS.gene27811.t1 |
| Gene Sequence |
| Protein sequence |
