Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53408.t1 | XP_003629785.1 | 99.6 | 466 | 2 | 0 | 1 | 466 | 59 | 524 | 7.10E-263 | 916 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53408.t1 | Q94C70 | 83.9 | 466 | 75 | 0 | 1 | 466 | 59 | 524 | 1.1e-232 | 807.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53408.t1 | G7LJF6 | 99.6 | 466 | 2 | 0 | 1 | 466 | 59 | 524 | 5.1e-263 | 916.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene53408 | 0.82055 | 6.47E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene53408 | 0.806751 | 7.07E-50 | -1.69E-46 |
| MS.gene05054 | MS.gene53408 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene050707 | MS.gene53408 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene050875 | MS.gene53408 | 0.814156 | 1.78E-51 | -1.69E-46 |
| MS.gene05124 | MS.gene53408 | 0.800812 | 1.21E-48 | -1.69E-46 |
| MS.gene051816 | MS.gene53408 | 0.841824 | 3.76E-58 | -1.69E-46 |
| MS.gene051896 | MS.gene53408 | 0.813939 | 1.99E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene53408 | 0.842165 | 3.06E-58 | -1.69E-46 |
| MS.gene051955 | MS.gene53408 | 0.861389 | 1.06E-63 | -1.69E-46 |
| MS.gene052143 | MS.gene53408 | 0.821097 | 4.84E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene53408 | 0.88867 | 4.80E-73 | -1.69E-46 |
| MS.gene052367 | MS.gene53408 | 0.854645 | 1.07E-61 | -1.69E-46 |
| MS.gene053173 | MS.gene53408 | 0.865959 | 4.04E-65 | -1.69E-46 |
| MS.gene053348 | MS.gene53408 | 0.873673 | 1.23E-67 | -1.69E-46 |
| MS.gene053416 | MS.gene53408 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene53408 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene53408 | 0.880974 | 3.53E-70 | -1.69E-46 |
| MS.gene054552 | MS.gene53408 | 0.82404 | 1.00E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene53408 | 0.875055 | 4.17E-68 | -1.69E-46 |
| MS.gene054614 | MS.gene53408 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene054633 | MS.gene53408 | 0.856444 | 3.20E-62 | -1.69E-46 |
| MS.gene054662 | MS.gene53408 | 0.832144 | 1.12E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene53408 | 0.830861 | 2.31E-55 | -1.69E-46 |
| MS.gene054885 | MS.gene53408 | 0.832591 | 8.66E-56 | -1.69E-46 |
| MS.gene054941 | MS.gene53408 | 0.838926 | 2.15E-57 | -1.69E-46 |
| MS.gene055308 | MS.gene53408 | 0.904373 | 1.31E-79 | -1.69E-46 |
| MS.gene055382 | MS.gene53408 | 0.824036 | 1.00E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene53408 | 0.890062 | 1.38E-73 | -1.69E-46 |
| MS.gene055579 | MS.gene53408 | 0.835796 | 1.36E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene53408 | 0.850228 | 1.94E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene53408 | 0.883248 | 5.27E-71 | -1.69E-46 |
| MS.gene056042 | MS.gene53408 | 0.818344 | 2.06E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene53408 | 0.888899 | 3.92E-73 | -1.69E-46 |
| MS.gene056526 | MS.gene53408 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene056528 | MS.gene53408 | 0.835375 | 1.74E-56 | -1.69E-46 |
| MS.gene05652 | MS.gene53408 | 0.867045 | 1.83E-65 | -1.69E-46 |
| MS.gene057367 | MS.gene53408 | 0.840203 | 1.00E-57 | -1.69E-46 |
| MS.gene057458 | MS.gene53408 | 0.864644 | 1.05E-64 | -1.69E-46 |
| MS.gene057669 | MS.gene53408 | 0.839858 | 1.23E-57 | -1.69E-46 |
| MS.gene058013 | MS.gene53408 | 0.829656 | 4.56E-55 | -1.69E-46 |
| MS.gene058128 | MS.gene53408 | 0.910381 | 2.00E-82 | -1.69E-46 |
| MS.gene058827 | MS.gene53408 | 0.834969 | 2.20E-56 | -1.69E-46 |
| MS.gene058828 | MS.gene53408 | 0.81885 | 1.58E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene53408 | 0.973148 | 6.12E-136 | -1.69E-46 |
| MS.gene05926 | MS.gene53408 | 0.801018 | 1.10E-48 | -1.69E-46 |
| MS.gene059553 | MS.gene53408 | 0.852306 | 5.03E-61 | -1.69E-46 |
| MS.gene059616 | MS.gene53408 | 0.860997 | 1.40E-63 | -1.69E-46 |
| MS.gene059905 | MS.gene53408 | 0.806232 | 9.09E-50 | -1.69E-46 |
| MS.gene060374 | MS.gene53408 | 0.808239 | 3.42E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene53408 | 0.865393 | 6.10E-65 | -1.69E-46 |
| MS.gene060565 | MS.gene53408 | 0.852861 | 3.50E-61 | -1.69E-46 |
| MS.gene060825 | MS.gene53408 | 0.817803 | 2.73E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene53408 | 0.880126 | 7.09E-70 | -1.69E-46 |
| MS.gene060985 | MS.gene53408 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene53408 | 0.855652 | 5.46E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene53408 | 0.878138 | 3.58E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033221 | MS.gene53408 | PPI |
| MS.gene074377 | MS.gene53408 | PPI |
| MS.gene53408 | MS.gene96701 | PPI |
| MS.gene044204 | MS.gene53408 | PPI |
| MS.gene25800 | MS.gene53408 | PPI |
| MS.gene71606 | MS.gene53408 | PPI |
| MS.gene53408 | MS.gene43290 | PPI |
| MS.gene60344 | MS.gene53408 | PPI |
| MS.gene56947 | MS.gene53408 | PPI |
| MS.gene70718 | MS.gene53408 | PPI |
| MS.gene70604 | MS.gene53408 | PPI |
| MS.gene022275 | MS.gene53408 | PPI |
| MS.gene25932 | MS.gene53408 | PPI |
| MS.gene53408 | MS.gene91317 | PPI |
| MS.gene86930 | MS.gene53408 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53408.t1 | MTR_8g086520 | 99.571 | 466 | 2 | 0 | 1 | 466 | 59 | 524 | 0.0 | 940 |
| MS.gene53408.t1 | MTR_2g016460 | 83.906 | 466 | 75 | 0 | 1 | 466 | 59 | 524 | 0.0 | 818 |
| MS.gene53408.t1 | MTR_8g086520 | 99.502 | 402 | 2 | 0 | 65 | 466 | 7 | 408 | 0.0 | 813 |
| MS.gene53408.t1 | MTR_8g086520 | 99.495 | 396 | 2 | 0 | 1 | 396 | 59 | 454 | 0.0 | 793 |
| MS.gene53408.t1 | MTR_3g080390 | 72.163 | 467 | 129 | 1 | 1 | 466 | 54 | 520 | 0.0 | 708 |
| MS.gene53408.t1 | MTR_8g086520 | 99.128 | 344 | 3 | 0 | 1 | 344 | 59 | 402 | 0.0 | 684 |
| MS.gene53408.t1 | MTR_8g063220 | 60.300 | 466 | 183 | 1 | 1 | 464 | 66 | 531 | 0.0 | 585 |
| MS.gene53408.t1 | MTR_3g078270 | 60.086 | 466 | 184 | 1 | 1 | 464 | 65 | 530 | 0.0 | 571 |
| MS.gene53408.t1 | MTR_4g106750 | 59.442 | 466 | 187 | 1 | 1 | 464 | 16 | 481 | 0.0 | 566 |
| MS.gene53408.t1 | MTR_4g106750 | 59.442 | 466 | 187 | 1 | 1 | 464 | 65 | 530 | 0.0 | 565 |
| MS.gene53408.t1 | MTR_1g021120 | 56.897 | 464 | 200 | 0 | 1 | 464 | 82 | 545 | 0.0 | 544 |
| MS.gene53408.t1 | MTR_5g035180 | 56.930 | 469 | 195 | 3 | 1 | 464 | 70 | 536 | 0.0 | 542 |
| MS.gene53408.t1 | MTR_1g106085 | 56.103 | 467 | 199 | 3 | 1 | 464 | 62 | 525 | 0.0 | 522 |
| MS.gene53408.t1 | MTR_3g103230 | 52.564 | 468 | 213 | 4 | 1 | 464 | 90 | 552 | 2.92e-179 | 513 |
| MS.gene53408.t1 | MTR_5g022110 | 53.105 | 467 | 212 | 3 | 1 | 464 | 83 | 545 | 1.83e-170 | 491 |
| MS.gene53408.t1 | MTR_4g106750 | 59.783 | 368 | 146 | 1 | 99 | 464 | 11 | 378 | 6.77e-159 | 455 |
| MS.gene53408.t1 | MTR_8g068550 | 36.162 | 495 | 280 | 5 | 1 | 463 | 265 | 755 | 5.96e-102 | 321 |
| MS.gene53408.t1 | MTR_2g084895 | 36.821 | 497 | 276 | 6 | 1 | 463 | 186 | 678 | 4.79e-101 | 317 |
| MS.gene53408.t1 | MTR_5g032020 | 37.067 | 491 | 273 | 5 | 1 | 459 | 207 | 693 | 1.67e-99 | 313 |
| MS.gene53408.t1 | MTR_2g103510 | 33.884 | 484 | 274 | 6 | 1 | 463 | 133 | 591 | 3.42e-92 | 291 |
| MS.gene53408.t1 | MTR_4g055290 | 34.809 | 497 | 281 | 6 | 1 | 463 | 193 | 680 | 1.63e-90 | 290 |
| MS.gene53408.t1 | MTR_8g086535 | 91.089 | 101 | 9 | 0 | 244 | 344 | 18 | 118 | 3.56e-54 | 177 |
| MS.gene53408.t1 | MTR_5g042660 | 64.286 | 56 | 20 | 0 | 397 | 452 | 39 | 94 | 1.12e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53408.t1 | AT2G34190 | 83.906 | 466 | 75 | 0 | 1 | 466 | 59 | 524 | 0.0 | 827 |
| MS.gene53408.t1 | AT2G05760 | 70.021 | 467 | 139 | 1 | 1 | 466 | 54 | 520 | 0.0 | 685 |
| MS.gene53408.t1 | AT5G62890 | 59.442 | 466 | 187 | 1 | 1 | 464 | 65 | 530 | 0.0 | 563 |
| MS.gene53408.t1 | AT5G62890 | 59.442 | 466 | 187 | 1 | 1 | 464 | 65 | 530 | 0.0 | 563 |
| MS.gene53408.t1 | AT5G62890 | 59.442 | 466 | 187 | 1 | 1 | 464 | 65 | 530 | 0.0 | 563 |
| MS.gene53408.t1 | AT1G60030 | 57.082 | 466 | 198 | 1 | 1 | 464 | 71 | 536 | 0.0 | 559 |
| MS.gene53408.t1 | AT2G26510 | 58.495 | 465 | 192 | 1 | 1 | 464 | 83 | 547 | 0.0 | 552 |
| MS.gene53408.t1 | AT1G10540 | 54.797 | 469 | 207 | 3 | 1 | 464 | 69 | 537 | 0.0 | 530 |
| MS.gene53408.t1 | AT5G49990 | 56.652 | 466 | 200 | 1 | 1 | 464 | 61 | 526 | 0.0 | 523 |
| MS.gene53408.t1 | AT5G49990 | 56.652 | 466 | 200 | 1 | 1 | 464 | 61 | 526 | 0.0 | 523 |
| MS.gene53408.t1 | AT5G49990 | 56.652 | 466 | 200 | 1 | 1 | 464 | 61 | 526 | 0.0 | 523 |
| MS.gene53408.t1 | AT5G49990 | 56.652 | 466 | 200 | 1 | 1 | 464 | 61 | 526 | 0.0 | 523 |
| MS.gene53408.t1 | AT1G49960 | 56.009 | 466 | 203 | 1 | 1 | 464 | 59 | 524 | 2.37e-180 | 515 |
| MS.gene53408.t1 | AT1G65550 | 50.740 | 473 | 222 | 4 | 1 | 464 | 69 | 539 | 6.68e-170 | 489 |
| MS.gene53408.t1 | AT5G62890 | 58.586 | 396 | 164 | 0 | 1 | 396 | 65 | 460 | 1.29e-163 | 471 |
| MS.gene53408.t1 | AT2G26510 | 59.306 | 317 | 129 | 0 | 1 | 317 | 83 | 399 | 2.57e-125 | 370 |
| MS.gene53408.t1 | AT1G10540 | 55.836 | 317 | 137 | 2 | 4 | 317 | 72 | 388 | 1.78e-121 | 360 |
| MS.gene53408.t1 | AT2G26510 | 59.211 | 304 | 124 | 0 | 1 | 304 | 83 | 386 | 1.16e-119 | 357 |
| MS.gene53408.t1 | AT5G25420 | 41.860 | 387 | 145 | 4 | 1 | 381 | 81 | 393 | 3.09e-99 | 304 |
| MS.gene53408.t1 | AT2G27810 | 35.614 | 497 | 283 | 6 | 1 | 463 | 208 | 701 | 1.80e-93 | 298 |
| MS.gene53408.t1 | AT4G38050 | 35.556 | 495 | 283 | 5 | 1 | 463 | 214 | 704 | 6.18e-89 | 286 |
| MS.gene53408.t1 | AT2G27810 | 33.973 | 521 | 283 | 7 | 1 | 463 | 208 | 725 | 3.65e-88 | 285 |
| MS.gene53408.t1 | AT2G27810 | 36.815 | 383 | 223 | 4 | 1 | 365 | 208 | 589 | 3.74e-73 | 241 |
| MS.gene53408.t1 | AT2G27810 | 37.202 | 336 | 192 | 4 | 1 | 318 | 208 | 542 | 2.07e-61 | 209 |
Find 114 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGCATACAAATTATTT+TGG | 0.101959 | 4.1:-13620299 | MS.gene53408:CDS |
| TAATTTGTTTCAGGTAAATT+TGG | 0.196029 | 4.1:-13618710 | MS.gene53408:intron |
| GTAATTACATTAGTTGGTTT+TGG | 0.246380 | 4.1:-13620083 | MS.gene53408:CDS |
| TTTGATGCTGGGCACTCTTT+TGG | 0.253563 | 4.1:-13619300 | MS.gene53408:CDS |
| TCATAACAACCACAGTGATA+TGG | 0.275276 | 4.1:-13619570 | MS.gene53408:CDS |
| ATTGATTATTGCTGTGTTCT+TGG | 0.284940 | 4.1:-13618073 | MS.gene53408:CDS |
| ATTTCAGAGAATACACTATC+AGG | 0.289187 | 4.1:-13618421 | MS.gene53408:CDS |
| CCATGGCATTCCTCTATCTT+TGG | 0.292772 | 4.1:+13618023 | None:intergenic |
| GGACAATACTCTTGACTATA+AGG | 0.306775 | 4.1:-13618052 | MS.gene53408:CDS |
| AAACCAACTAATGTAATTAC+TGG | 0.315074 | 4.1:+13620086 | None:intergenic |
| AAGAATAGAAGATGGTATTC+AGG | 0.318777 | 4.1:+13618109 | None:intergenic |
| ATGATATTCTTTGCAATGTT+AGG | 0.319292 | 4.1:-13618828 | MS.gene53408:intron |
| CTCCTATCACTGTTGGTAAC+CGG | 0.320169 | 4.1:+13620596 | None:intergenic |
| GTGGGGACTTGTGTTGAAAT+TGG | 0.325063 | 4.1:-13619928 | MS.gene53408:CDS |
| AAATATGGGCTATTTGTTCT+AGG | 0.325670 | 4.1:-13620267 | MS.gene53408:intron |
| GTGTATTCTCTGAAATATTC+AGG | 0.350685 | 4.1:+13618428 | None:intergenic |
| ATCTCATTTCTTCCGCTCCT+TGG | 0.363626 | 4.1:-13619462 | MS.gene53408:intron |
| CTTGTTTGTAGTGTTCTCTC+AGG | 0.378594 | 4.1:-13619890 | MS.gene53408:intron |
| AAAAGAAGGGTCACGAATAA+TGG | 0.387784 | 4.1:+13620543 | None:intergenic |
| TTTGGGATTTAGTCAAATAT+GGG | 0.396617 | 4.1:-13620281 | MS.gene53408:CDS |
| GAGCCGTGGTATCGGTTGGC+AGG | 0.401838 | 4.1:-13619061 | MS.gene53408:CDS |
| GTTCCAGTAATTACATTAGT+TGG | 0.413657 | 4.1:-13620089 | MS.gene53408:CDS |
| TGCCAACACGGTTGCTTCCT+AGG | 0.415342 | 4.1:+13618883 | None:intergenic |
| GGTATCGGTTGGCAGGGAAT+TGG | 0.421613 | 4.1:-13619054 | MS.gene53408:CDS |
| AGGGTTATTCAAGTTTCTGC+TGG | 0.424755 | 4.1:-13618855 | MS.gene53408:CDS |
| GGTGCTCCTACATTTGATGC+TGG | 0.427984 | 4.1:-13619312 | MS.gene53408:CDS |
| TACACTATCAGGGCCTTTCA+TGG | 0.429220 | 4.1:-13618410 | MS.gene53408:CDS |
| TCCCAAAATAATTTGTATGC+TGG | 0.431042 | 4.1:+13620297 | None:intergenic |
| AGAGAGAATGTAGGACTCCT+AGG | 0.436161 | 4.1:-13618900 | MS.gene53408:CDS |
| CATAACAACCACAGTGATAT+GGG | 0.441500 | 4.1:-13619569 | MS.gene53408:CDS |
| TGTTGCAGGATGATAAAGTA+AGG | 0.446203 | 4.1:-13620681 | MS.gene53408:intron |
| AGGAGGATCATATGCATTCA+TGG | 0.453580 | 4.1:-13620578 | MS.gene53408:CDS |
| AACATAGTTGTAGGACAGAC+AGG | 0.467914 | 4.1:-13619489 | MS.gene53408:CDS |
| TCACGAATAATGGATACAAT+GGG | 0.468928 | 4.1:+13620553 | None:intergenic |
| TGCTCATACCAAAGCTGGAT+GGG | 0.470991 | 4.1:-13618384 | MS.gene53408:intron |
| TGCAAACACTGTTTGGAACC+CGG | 0.473980 | 4.1:-13620615 | MS.gene53408:CDS |
| AATGATAGATGACCCACAAT+TGG | 0.477393 | 4.1:-13620518 | MS.gene53408:intron |
| TCCTATCACTGTTGGTAACC+GGG | 0.477745 | 4.1:+13620597 | None:intergenic |
| GCCAACCGATACCACGGCTC+AGG | 0.478834 | 4.1:+13619064 | None:intergenic |
| AGAAATGTACTAACCAATTG+TGG | 0.479205 | 4.1:+13620505 | None:intergenic |
| GAATAGACAAGCCTAAGAAA+AGG | 0.479304 | 4.1:+13618450 | None:intergenic |
| GGTCCTGCTCATACCAAAGC+TGG | 0.479360 | 4.1:-13618389 | MS.gene53408:CDS |
| GAAACTCACCCATCCAGCTT+TGG | 0.485860 | 4.1:+13618376 | None:intergenic |
| GTACACAGAAACTGTTGAAC+CGG | 0.486278 | 4.1:+13618999 | None:intergenic |
| ACCCGGTTACCAACAGTGAT+AGG | 0.489452 | 4.1:-13620598 | MS.gene53408:CDS |
| GCACCCCACTCAAGAGGGTA+TGG | 0.499949 | 4.1:+13619330 | None:intergenic |
| ATGTAACTCAACATAGTTGT+AGG | 0.501947 | 4.1:-13619498 | MS.gene53408:CDS |
| TCATCTATCATTGCAAAAGA+AGG | 0.502196 | 4.1:+13620529 | None:intergenic |
| AAGAAGCGGTTGAGATTGAA+AGG | 0.503438 | 4.1:+13617943 | None:intergenic |
| AACCGGTTAGTGTTCCGAAA+AGG | 0.514137 | 4.1:+13619016 | None:intergenic |
| GTGCTCCTACATTTGATGCT+GGG | 0.514731 | 4.1:-13619311 | MS.gene53408:CDS |
| ATGAGGAACCTCTTTATCAC+TGG | 0.516659 | 4.1:-13618479 | MS.gene53408:CDS |
| CATGTCCTGAGCCGTGGTAT+CGG | 0.518412 | 4.1:-13619069 | MS.gene53408:CDS |
| AATAGACAAGCCTAAGAAAA+GGG | 0.522987 | 4.1:+13618451 | None:intergenic |
| TTTCTTGTTCCTTCAATGGG+TGG | 0.525960 | 4.1:-13621659 | None:intergenic |
| GCAATAATCAATGCAACAGT+TGG | 0.533111 | 4.1:+13618084 | None:intergenic |
| AAGGACAGTGCCAAAGATAG+AGG | 0.534675 | 4.1:-13618033 | MS.gene53408:CDS |
| TCCTGAGCCGTGGTATCGGT+TGG | 0.538613 | 4.1:-13619065 | MS.gene53408:CDS |
| TATGATCCTCCTATCACTGT+TGG | 0.541705 | 4.1:+13620589 | None:intergenic |
| CCACGGCTCAGGACATGAGC+AGG | 0.543664 | 4.1:+13619075 | None:intergenic |
| CATCCAGCTTTGGTATGAGC+AGG | 0.545272 | 4.1:+13618386 | None:intergenic |
| GAAATGTACTAACCAATTGT+GGG | 0.546919 | 4.1:+13620506 | None:intergenic |
| GAGTGCCCAGCATCAAATGT+AGG | 0.547055 | 4.1:+13619306 | None:intergenic |
| CTGCTCATACCAAAGCTGGA+TGG | 0.547379 | 4.1:-13618385 | MS.gene53408:CDS |
| GTCACGAATAATGGATACAA+TGG | 0.549123 | 4.1:+13620552 | None:intergenic |
| CAGAAACTTGAATAACCCTT+CGG | 0.550365 | 4.1:+13618859 | None:intergenic |
| CTCAGGACATGAGCAGGCGG+TGG | 0.550799 | 4.1:+13619081 | None:intergenic |
| CAACTATGTTGAGTTACATC+CGG | 0.554296 | 4.1:+13619502 | None:intergenic |
| GGGCAACACCAGTGATAAAG+AGG | 0.555822 | 4.1:+13618471 | None:intergenic |
| GACATGAGCAGGCGGTGGTG+TGG | 0.560084 | 4.1:+13619086 | None:intergenic |
| TAACCCTTCGGCTGCCAACA+CGG | 0.560723 | 4.1:+13618871 | None:intergenic |
| ATTTGACAGAGGTTTCCCTA+TGG | 0.567601 | 4.1:-13620057 | MS.gene53408:intron |
| GTTCCTCATTGAATTCATGT+TGG | 0.571510 | 4.1:+13618493 | None:intergenic |
| GCAACCGTGTTGGCAGCCGA+AGG | 0.576172 | 4.1:-13618875 | MS.gene53408:CDS |
| CACTACAAACAAGATTAGCA+TGG | 0.579230 | 4.1:+13619900 | None:intergenic |
| CTCCTAGGAAGCAACCGTGT+TGG | 0.580038 | 4.1:-13618885 | MS.gene53408:CDS |
| TTTCAGAGAATACACTATCA+GGG | 0.580243 | 4.1:-13618420 | MS.gene53408:CDS |
| AGTTGGTGAAGAATAGAAGA+TGG | 0.581474 | 4.1:+13618101 | None:intergenic |
| CCTGCTCATGTCCTGAGCCG+TGG | 0.582782 | 4.1:-13619075 | MS.gene53408:CDS |
| AGCCGTGGTATCGGTTGGCA+GGG | 0.590320 | 4.1:-13619060 | MS.gene53408:CDS |
| GGTATGAGCAGGACCATGAA+AGG | 0.591544 | 4.1:+13618397 | None:intergenic |
| CATCTATCATTGCAAAAGAA+GGG | 0.595562 | 4.1:+13620530 | None:intergenic |
| TTCCCTGCCAACCGATACCA+CGG | 0.595568 | 4.1:+13619058 | None:intergenic |
| AGAGCAAATCTCTCTAGTAT+CGG | 0.602160 | 4.1:+13619595 | None:intergenic |
| CATCTTGACAGAGAGAATGT+AGG | 0.602743 | 4.1:-13618909 | MS.gene53408:intron |
| ACTACAAACAAGATTAGCAT+GGG | 0.605867 | 4.1:+13619901 | None:intergenic |
| AGATTCCATACCCTCTTGAG+TGG | 0.607942 | 4.1:-13619335 | MS.gene53408:CDS |
| ATGCTACAATTAGTGCACCT+TGG | 0.608851 | 4.1:+13620320 | None:intergenic |
| TAGGAGCACCCCACTCAAGA+GGG | 0.617390 | 4.1:+13619325 | None:intergenic |
| GCACATCTATTGACAGCGAG+TGG | 0.619907 | 4.1:-13619541 | MS.gene53408:CDS |
| GATTCCATACCCTCTTGAGT+GGG | 0.620879 | 4.1:-13619334 | MS.gene53408:CDS |
| GTAGGAGCACCCCACTCAAG+AGG | 0.622953 | 4.1:+13619324 | None:intergenic |
| AAGATAGAGGAATGCCATGG+TGG | 0.624875 | 4.1:-13618020 | MS.gene53408:CDS |
| TATGTTGAGTTACATCCGGC+CGG | 0.624907 | 4.1:+13619506 | None:intergenic |
| CAACCGTGTTGGCAGCCGAA+GGG | 0.626544 | 4.1:-13618874 | MS.gene53408:CDS |
| AGATAGAGGAATGCCATGGT+GGG | 0.635902 | 4.1:-13618019 | MS.gene53408:CDS |
| GTTGCAGGATGATAAAGTAA+GGG | 0.641584 | 4.1:-13620680 | MS.gene53408:intron |
| TGGAGCATACAAACACCGGC+CGG | 0.643571 | 4.1:-13619521 | MS.gene53408:CDS |
| CGGTTACCAACAGTGATAGG+AGG | 0.653551 | 4.1:-13620595 | MS.gene53408:CDS |
| GCAGGATGATAAAGTAAGGG+TGG | 0.654485 | 4.1:-13620677 | MS.gene53408:intron |
| AGCACAATGAGAGCAGTCCA+AGG | 0.659630 | 4.1:-13620337 | MS.gene53408:CDS |
| CGAGTGGAGCATACAAACAC+CGG | 0.663938 | 4.1:-13619525 | MS.gene53408:CDS |
| CGGCTCAGGACATGAGCAGG+CGG | 0.664877 | 4.1:+13619078 | None:intergenic |
| ATTCCATACCCTCTTGAGTG+GGG | 0.671790 | 4.1:-13619333 | MS.gene53408:CDS |
| GTTCTAAACTTAGCCCACCA+TGG | 0.673056 | 4.1:+13618006 | None:intergenic |
| TATTGGTACCAACCAAGGAG+CGG | 0.679674 | 4.1:+13619450 | None:intergenic |
| ATTACTGGAACCATTCCAAG+TGG | 0.685617 | 4.1:+13620101 | None:intergenic |
| CCAAAGATAGAGGAATGCCA+TGG | 0.686802 | 4.1:-13618023 | MS.gene53408:CDS |
| TCACCAACATGAATTCAATG+AGG | 0.689628 | 4.1:-13618496 | MS.gene53408:CDS |
| ACATAGTTGTAGGACAGACA+GGG | 0.696081 | 4.1:-13619488 | MS.gene53408:CDS |
| TCTATGATGGAGGAAAGAAG+CGG | 0.698502 | 4.1:+13617929 | None:intergenic |
| TTACTGGAACCATTCCAAGT+GGG | 0.700944 | 4.1:+13620102 | None:intergenic |
| CACGAATAATGGATACAATG+GGG | 0.733637 | 4.1:+13620554 | None:intergenic |
| TGCATATGCCCATATCACTG+TGG | 0.777461 | 4.1:+13619561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTAAATATATATTTTTGT+TGG | - | chr4.1:13619586-13619605 | MS.gene53408:CDS | 10.0% |
| !! | CTTCACAAATATATAAAATA+AGG | + | chr4.1:13619337-13619356 | None:intergenic | 15.0% |
| !!! | ATATGGTTTTCATTTTTTAT+GGG | - | chr4.1:13620622-13620641 | MS.gene53408:CDS | 15.0% |
| !! | TAGTTAAAAGAATTGAAGTT+AGG | + | chr4.1:13617959-13617978 | None:intergenic | 20.0% |
| !! | TATCATTGGAAAAATTATAC+CGG | - | chr4.1:13620355-13620374 | MS.gene53408:intron | 20.0% |
| !! | TCACTAACTATAATTAATAC+AGG | + | chr4.1:13618352-13618371 | None:intergenic | 20.0% |
| !!! | CATATGGTTTTCATTTTTTA+TGG | - | chr4.1:13620621-13620640 | MS.gene53408:CDS | 20.0% |
| !!! | TAATTTGTTTCAGGTAAATT+TGG | - | chr4.1:13620864-13620883 | MS.gene53408:intron | 20.0% |
| !!! | TATAATTAATACAGGTGTTT+TGG | + | chr4.1:13618344-13618363 | None:intergenic | 20.0% |
| !!! | TATTTTCTTTTTATCGTGTT+TGG | - | chr4.1:13618726-13618745 | MS.gene53408:intron | 20.0% |
| !!! | TATTTTTGATAAGATGCAAA+GGG | - | chr4.1:13618693-13618712 | MS.gene53408:CDS | 20.0% |
| !!! | TTATTTTTGATAAGATGCAA+AGG | - | chr4.1:13618692-13618711 | MS.gene53408:CDS | 20.0% |
| !!! | TTTAAGTTTAAATTAGCTTG+TGG | - | chr4.1:13619739-13619758 | MS.gene53408:intron | 20.0% |
| !!! | TTTTCTTATTCTCATTCATA+TGG | - | chr4.1:13620605-13620624 | MS.gene53408:CDS | 20.0% |
| ! | AAACCAACTAATGTAATTAC+TGG | + | chr4.1:13619491-13619510 | None:intergenic | 25.0% |
| ! | AAATACCCATGACTATTTAT+TGG | - | chr4.1:13618532-13618551 | MS.gene53408:intron | 25.0% |
| ! | AGTATATAGCAGCAAAAATA+GGG | + | chr4.1:13620914-13620933 | None:intergenic | 25.0% |
| ! | ATGATATTCTTTGCAATGTT+AGG | - | chr4.1:13620746-13620765 | MS.gene53408:intron | 25.0% |
| ! | ATTGATCCAAACACAATAAA+AGG | + | chr4.1:13618078-13618097 | None:intergenic | 25.0% |
| ! | CAAAGAAAATATTGAGCTAT+TGG | - | chr4.1:13620183-13620202 | MS.gene53408:intron | 25.0% |
| ! | CAACACATCATAATACATTA+AGG | + | chr4.1:13619922-13619941 | None:intergenic | 25.0% |
| ! | CTTCATAAAATGACTATCAT+TGG | - | chr4.1:13620341-13620360 | MS.gene53408:CDS | 25.0% |
| ! | TCTATCCAATAAATAGTCAT+GGG | + | chr4.1:13618540-13618559 | None:intergenic | 25.0% |
| ! | TGAAACAAATTATGAAACAC+AGG | + | chr4.1:13620856-13620875 | None:intergenic | 25.0% |
| ! | TTGATCCAAACACAATAAAA+GGG | + | chr4.1:13618077-13618096 | None:intergenic | 25.0% |
| !! | AGCATCTATTGATAATTGTT+TGG | - | chr4.1:13620989-13621008 | MS.gene53408:intron | 25.0% |
| !! | ATCCAGCATACAAATTATTT+TGG | - | chr4.1:13619275-13619294 | MS.gene53408:CDS | 25.0% |
| !! | TAATTCCCTTTTATTGTGTT+TGG | - | chr4.1:13618069-13618088 | MS.gene53408:CDS | 25.0% |
| !! | TCCAGCATACAAATTATTTT+GGG | - | chr4.1:13619276-13619295 | MS.gene53408:CDS | 25.0% |
| !! | TGAATTTTACACTGTTGTTA+AGG | - | chr4.1:13618272-13618291 | MS.gene53408:intron | 25.0% |
| !! | TTTGGGATTTAGTCAAATAT+GGG | - | chr4.1:13619293-13619312 | MS.gene53408:CDS | 25.0% |
| !!! | ATATTTTTTTCAGCTTCTGT+AGG | - | chr4.1:13621038-13621057 | MS.gene53408:intron | 25.0% |
| !!! | ATTTTTTTTGTCTTGTGTAC+TGG | - | chr4.1:13618752-13618771 | MS.gene53408:intron | 25.0% |
| !!! | CTACTTTGATTTGATTTTGA+TGG | - | chr4.1:13618653-13618672 | MS.gene53408:CDS | 25.0% |
| !!! | GTAATTACATTAGTTGGTTT+TGG | - | chr4.1:13619491-13619510 | MS.gene53408:CDS | 25.0% |
| !!! | TATTTTTTTCAGCTTCTGTA+GGG | - | chr4.1:13621039-13621058 | MS.gene53408:intron | 25.0% |
| !!! | TGGATCAATGTTTTAACAAT+CGG | - | chr4.1:13618089-13618108 | MS.gene53408:CDS | 25.0% |
| !!! | TGTGTTTCATAATTTGTTTC+AGG | - | chr4.1:13620855-13620874 | MS.gene53408:intron | 25.0% |
| !!! | TTATTATTTTGACAGTCAAC+TGG | - | chr4.1:13620433-13620452 | MS.gene53408:intron | 25.0% |
| !!! | TTTGTCTATTGGTTTAATCA+TGG | - | chr4.1:13618200-13618219 | MS.gene53408:intron | 25.0% |
| !!! | TTTTGGGATTTAGTCAAATA+TGG | - | chr4.1:13619292-13619311 | MS.gene53408:CDS | 25.0% |
| AAAATCTGCATGAAAGGAAA+AGG | + | chr4.1:13619448-13619467 | None:intergenic | 30.0% | |
| AAACCAATAGACAAACTAGT+AGG | + | chr4.1:13618195-13618214 | None:intergenic | 30.0% | |
| AACTGGTTGAATTGGAAATT+GGG | - | chr4.1:13618143-13618162 | MS.gene53408:intron | 30.0% | |
| AAGAATAGAAGATGGTATTC+AGG | + | chr4.1:13621468-13621487 | None:intergenic | 30.0% | |
| AATAGACAAGCCTAAGAAAA+GGG | + | chr4.1:13621126-13621145 | None:intergenic | 30.0% | |
| ACTACAAACAAGATTAGCAT+GGG | + | chr4.1:13619676-13619695 | None:intergenic | 30.0% | |
| AGAAATGTACTAACCAATTG+TGG | + | chr4.1:13619072-13619091 | None:intergenic | 30.0% | |
| AGATGCTGAAGTAAATTCAA+AGG | + | chr4.1:13620976-13620995 | None:intergenic | 30.0% | |
| AGTTGAATCAGATTGAATAG+TGG | - | chr4.1:13618237-13618256 | MS.gene53408:intron | 30.0% | |
| ATGTAACTCAACATAGTTGT+AGG | - | chr4.1:13620076-13620095 | MS.gene53408:CDS | 30.0% | |
| ATTGATTATTGCTGTGTTCT+TGG | - | chr4.1:13621501-13621520 | MS.gene53408:intron | 30.0% | |
| ATTTCAGAGAATACACTATC+AGG | - | chr4.1:13621153-13621172 | MS.gene53408:intron | 30.0% | |
| CAGTATATAGCAGCAAAAAT+AGG | + | chr4.1:13620915-13620934 | None:intergenic | 30.0% | |
| CATATATTGCTTATTGTTGC+AGG | - | chr4.1:13618879-13618898 | MS.gene53408:CDS | 30.0% | |
| CATCTATCATTGCAAAAGAA+GGG | + | chr4.1:13619047-13619066 | None:intergenic | 30.0% | |
| CATGACTATTTATTGGATAG+AGG | - | chr4.1:13618539-13618558 | MS.gene53408:intron | 30.0% | |
| CTCTATCCAATAAATAGTCA+TGG | + | chr4.1:13618541-13618560 | None:intergenic | 30.0% | |
| GAAATGTACTAACCAATTGT+GGG | + | chr4.1:13619071-13619090 | None:intergenic | 30.0% | |
| GACAATGAAAAATACTAGCA+AGG | - | chr4.1:13618468-13618487 | MS.gene53408:CDS | 30.0% | |
| GATGCTGAAGTAAATTCAAA+GGG | + | chr4.1:13620975-13620994 | None:intergenic | 30.0% | |
| GTAACAAATTGAACAGAAAG+AGG | + | chr4.1:13619875-13619894 | None:intergenic | 30.0% | |
| GTATGTTTAACAGGTTGTAA+CGG | - | chr4.1:13618166-13618185 | MS.gene53408:intron | 30.0% | |
| GTTCCAGTAATTACATTAGT+TGG | - | chr4.1:13619485-13619504 | MS.gene53408:CDS | 30.0% | |
| TATATGTCAAATAACTGGAC+TGG | - | chr4.1:13619707-13619726 | MS.gene53408:intron | 30.0% | |
| TCAGGTATATGTCAAATAAC+TGG | - | chr4.1:13619702-13619721 | MS.gene53408:intron | 30.0% | |
| TCATCTATCATTGCAAAAGA+AGG | + | chr4.1:13619048-13619067 | None:intergenic | 30.0% | |
| TCATTCATTCAAACCTATTC+AGG | + | chr4.1:13619899-13619918 | None:intergenic | 30.0% | |
| TCATTGAACTGCAAAATCAA+AGG | + | chr4.1:13621442-13621461 | None:intergenic | 30.0% | |
| TGAATATCAATCCTCTATCT+TGG | + | chr4.1:13618861-13618880 | None:intergenic | 30.0% | |
| TTTCAGAGAATACACTATCA+GGG | - | chr4.1:13621154-13621173 | MS.gene53408:intron | 30.0% | |
| ! | AAATATGGGCTATTTGTTCT+AGG | - | chr4.1:13619307-13619326 | MS.gene53408:CDS | 30.0% |
| ! | GATAATTGTTTGGTCTTCTT+TGG | - | chr4.1:13620999-13621018 | MS.gene53408:intron | 30.0% |
| ! | TAACCTACTAGTTTGTCTAT+TGG | - | chr4.1:13618189-13618208 | MS.gene53408:intron | 30.0% |
| ! | TCCCAAAATAATTTGTATGC+TGG | + | chr4.1:13619280-13619299 | None:intergenic | 30.0% |
| !! | GCTATATACTGTGTTTTGTT+TGG | - | chr4.1:13620924-13620943 | MS.gene53408:intron | 30.0% |
| !! | GTGTATTCTCTGAAATATTC+AGG | + | chr4.1:13621149-13621168 | None:intergenic | 30.0% |
| !! | TCAATTTGTTACACCTGAAT+AGG | - | chr4.1:13619883-13619902 | MS.gene53408:intron | 30.0% |
| !! | TCACGAATAATGGATACAAT+GGG | + | chr4.1:13619024-13619043 | None:intergenic | 30.0% |
| !! | TTAAATTAGCTTGTGGAATG+TGG | - | chr4.1:13619746-13619765 | MS.gene53408:intron | 30.0% |
| !! | TTGATTTTGATGGATGATAC+TGG | - | chr4.1:13618663-13618682 | MS.gene53408:CDS | 30.0% |
| !!! | CAAACTCTACTTTTTGTTGA+AGG | - | chr4.1:13618922-13618941 | MS.gene53408:intron | 30.0% |
| !!! | GTTTTCATTTTTTATGGGAC+AGG | - | chr4.1:13620627-13620646 | MS.gene53408:CDS | 30.0% |
| !!! | TGTTTTAGTCTCATTAGTTG+AGG | - | chr4.1:13620309-13620328 | MS.gene53408:CDS | 30.0% |
| AAAAGAAGGGTCACGAATAA+TGG | + | chr4.1:13619034-13619053 | None:intergenic | 35.0% | |
| AATGATAGATGACCCACAAT+TGG | - | chr4.1:13619056-13619075 | MS.gene53408:CDS | 35.0% | |
| ACTGGTTGAATTGGAAATTG+GGG | - | chr4.1:13618144-13618163 | MS.gene53408:intron | 35.0% | |
| AGAGCAAATCTCTCTAGTAT+CGG | + | chr4.1:13619982-13620001 | None:intergenic | 35.0% | |
| ATAGCAGCAAAAATAGGGAA+TGG | + | chr4.1:13620909-13620928 | None:intergenic | 35.0% | |
| ATTTCCTTCTTTCTTGCTCT+AGG | + | chr4.1:13619834-13619853 | None:intergenic | 35.0% | |
| CAACTATGTTGAGTTACATC+CGG | + | chr4.1:13620075-13620094 | None:intergenic | 35.0% | |
| CAACTGGTTGAATTGGAAAT+TGG | - | chr4.1:13618142-13618161 | MS.gene53408:intron | 35.0% | |
| CACTACAAACAAGATTAGCA+TGG | + | chr4.1:13619677-13619696 | None:intergenic | 35.0% | |
| CAGAAACTTGAATAACCCTT+CGG | + | chr4.1:13620718-13620737 | None:intergenic | 35.0% | |
| CAGTGTTGTACTATACCATA+GGG | + | chr4.1:13619535-13619554 | None:intergenic | 35.0% | |
| CATAACAACCACAGTGATAT+GGG | - | chr4.1:13620005-13620024 | MS.gene53408:intron | 35.0% | |
| CTCTATGCAAATCTCTACTT+AGG | - | chr4.1:13618036-13618055 | MS.gene53408:CDS | 35.0% | |
| GAAATTGGGGTATGTTTAAC+AGG | - | chr4.1:13618157-13618176 | MS.gene53408:intron | 35.0% | |
| GAATAGACAAGCCTAAGAAA+AGG | + | chr4.1:13621127-13621146 | None:intergenic | 35.0% | |
| GCAATAATCAATGCAACAGT+TGG | + | chr4.1:13621493-13621512 | None:intergenic | 35.0% | |
| GGACAATACTCTTGACTATA+AGG | - | chr4.1:13621522-13621541 | MS.gene53408:intron | 35.0% | |
| GTTCCTCATTGAATTCATGT+TGG | + | chr4.1:13621084-13621103 | None:intergenic | 35.0% | |
| GTTGCAGGATGATAAAGTAA+GGG | - | chr4.1:13618894-13618913 | MS.gene53408:CDS | 35.0% | |
| TAGGTGAGTGGCAAATTATA+GGG | - | chr4.1:13620765-13620784 | MS.gene53408:intron | 35.0% | |
| TCACCAACATGAATTCAATG+AGG | - | chr4.1:13621078-13621097 | MS.gene53408:intron | 35.0% | |
| TCAGTGTTGTACTATACCAT+AGG | + | chr4.1:13619536-13619555 | None:intergenic | 35.0% | |
| TCATAACAACCACAGTGATA+TGG | - | chr4.1:13620004-13620023 | MS.gene53408:intron | 35.0% | |
| TGTTGCAGGATGATAAAGTA+AGG | - | chr4.1:13618893-13618912 | MS.gene53408:CDS | 35.0% | |
| TTAGGTGAGTGGCAAATTAT+AGG | - | chr4.1:13620764-13620783 | MS.gene53408:intron | 35.0% | |
| TTCAGTTCAACTGGTTGAAT+TGG | - | chr4.1:13618135-13618154 | MS.gene53408:intron | 35.0% | |
| TTGTCACATGCTAAATGAAG+TGG | - | chr4.1:13618778-13618797 | MS.gene53408:intron | 35.0% | |
| ! | ACACTTTTGCAAACACTGTT+TGG | - | chr4.1:13618952-13618971 | MS.gene53408:intron | 35.0% |
| ! | ATTTTGCTGAATGGCCTTTT+CGG | - | chr4.1:13620544-13620563 | MS.gene53408:CDS | 35.0% |
| ! | GGAATTGGAATTTTGCTGAA+TGG | - | chr4.1:13620535-13620554 | MS.gene53408:CDS | 35.0% |
| !! | AGTTGGTGAAGAATAGAAGA+TGG | + | chr4.1:13621476-13621495 | None:intergenic | 35.0% |
| !! | CACGAATAATGGATACAATG+GGG | + | chr4.1:13619023-13619042 | None:intergenic | 35.0% |
| !! | GTCACGAATAATGGATACAA+TGG | + | chr4.1:13619025-13619044 | None:intergenic | 35.0% |
| !! | GTCTATTGGTTTAATCATGG+TGG | - | chr4.1:13618203-13618222 | MS.gene53408:intron | 35.0% |
| !!! | GGTTTTGGATTATTTGACAG+AGG | - | chr4.1:13619506-13619525 | MS.gene53408:CDS | 35.0% |
| !!! | TGTGTTTTGTTTGGTCTTGT+AGG | - | chr4.1:13620933-13620952 | MS.gene53408:intron | 35.0% |
| AAAGCCTAGAGCAAGAAAGA+AGG | - | chr4.1:13619827-13619846 | MS.gene53408:intron | 40.0% | |
| AACATAGTTGTAGGACAGAC+AGG | - | chr4.1:13620085-13620104 | MS.gene53408:CDS | 40.0% | |
| AAGAAGCGGTTGAGATTGAA+AGG | + | chr4.1:13621634-13621653 | None:intergenic | 40.0% | |
| ACATAGTTGTAGGACAGACA+GGG | - | chr4.1:13620086-13620105 | MS.gene53408:CDS | 40.0% | |
| AGGAGGATCATATGCATTCA+TGG | - | chr4.1:13618996-13619015 | MS.gene53408:intron | 40.0% | |
| ATCATATCTCATCTCGTCTC+AGG | - | chr4.1:13621245-13621264 | MS.gene53408:intron | 40.0% | |
| ATGAGGAACCTCTTTATCAC+TGG | - | chr4.1:13621095-13621114 | MS.gene53408:intron | 40.0% | |
| ATGCTACAATTAGTGCACCT+TGG | + | chr4.1:13619257-13619276 | None:intergenic | 40.0% | |
| ATTACTGGAACCATTCCAAG+TGG | + | chr4.1:13619476-13619495 | None:intergenic | 40.0% | |
| ATTTGACAGAGGTTTCCCTA+TGG | - | chr4.1:13619517-13619536 | MS.gene53408:CDS | 40.0% | |
| CACATGCTAAATGAAGTGGT+GGG | - | chr4.1:13618782-13618801 | MS.gene53408:intron | 40.0% | |
| CATCTTGACAGAGAGAATGT+AGG | - | chr4.1:13620665-13620684 | MS.gene53408:CDS | 40.0% | |
| CCTCAAACTTACCAAGATAG+AGG | - | chr4.1:13618847-13618866 | MS.gene53408:CDS | 40.0% | |
| CCTCTATCTTGGTAAGTTTG+AGG | + | chr4.1:13618850-13618869 | None:intergenic | 40.0% | |
| CTTGTTTGTAGTGTTCTCTC+AGG | - | chr4.1:13619684-13619703 | MS.gene53408:intron | 40.0% | |
| GAATACAAGTACAAGTCACG+TGG | + | chr4.1:13619561-13619580 | None:intergenic | 40.0% | |
| GAGATACACAAACATGGAAG+AGG | + | chr4.1:13619205-13619224 | None:intergenic | 40.0% | |
| GGCTGAAAAATCTGCATGAA+AGG | + | chr4.1:13619454-13619473 | None:intergenic | 40.0% | |
| GTACACAGAAACTGTTGAAC+CGG | + | chr4.1:13620578-13620597 | None:intergenic | 40.0% | |
| TATGATCCTCCTATCACTGT+TGG | + | chr4.1:13618988-13619007 | None:intergenic | 40.0% | |
| TCACATGCTAAATGAAGTGG+TGG | - | chr4.1:13618781-13618800 | MS.gene53408:intron | 40.0% | |
| TCATATCTCATCTCGTCTCA+GGG | - | chr4.1:13621246-13621265 | MS.gene53408:intron | 40.0% | |
| TCATTGTGCTAAGAAACCTC+TGG | + | chr4.1:13619227-13619246 | None:intergenic | 40.0% | |
| TCTCCCAAAAGAGGAAAATC+TGG | - | chr4.1:13618805-13618824 | MS.gene53408:intron | 40.0% | |
| TCTTTGCAATGTTAGGTGAG+TGG | - | chr4.1:13620753-13620772 | MS.gene53408:intron | 40.0% | |
| TGTGTGTTACGTAAGCATAC+CGG | + | chr4.1:13620377-13620396 | None:intergenic | 40.0% | |
| TTACTGGAACCATTCCAAGT+GGG | + | chr4.1:13619475-13619494 | None:intergenic | 40.0% | |
| TTCGACAACAACGATGCTAT+TGG | + | chr4.1:13620144-13620163 | None:intergenic | 40.0% | |
| ! | AGGGTTATTCAAGTTTCTGC+TGG | - | chr4.1:13620719-13620738 | MS.gene53408:intron | 40.0% |
| ! | CCACCAGATTTTCCTCTTTT+GGG | + | chr4.1:13618811-13618830 | None:intergenic | 40.0% |
| ! | TCCACCAGATTTTCCTCTTT+TGG | + | chr4.1:13618812-13618831 | None:intergenic | 40.0% |
| !! | ATTTTTCAGCCCACTTGGAA+TGG | - | chr4.1:13619463-13619482 | MS.gene53408:CDS | 40.0% |
| !! | CATTGACTCTTGACACATGT+TGG | - | chr4.1:13620206-13620225 | MS.gene53408:intron | 40.0% |
| AACCGGTTAGTGTTCCGAAA+AGG | + | chr4.1:13620561-13620580 | None:intergenic | 45.0% | |
| AAGATAGAGGAATGCCATGG+TGG | - | chr4.1:13621554-13621573 | MS.gene53408:intron | 45.0% | |
| AAGGACAGTGCCAAAGATAG+AGG | - | chr4.1:13621541-13621560 | MS.gene53408:intron | 45.0% | |
| ACCAGTCAGTTCAGTTCAAC+TGG | - | chr4.1:13618126-13618145 | MS.gene53408:intron | 45.0% | |
| ACCAGTTGAACTGAACTGAC+TGG | + | chr4.1:13618130-13618149 | None:intergenic | 45.0% | |
| AGAGAGAATGTAGGACTCCT+AGG | - | chr4.1:13620674-13620693 | MS.gene53408:CDS | 45.0% | |
| AGATAGAGGAATGCCATGGT+GGG | - | chr4.1:13621555-13621574 | MS.gene53408:intron | 45.0% | |
| AGATTCCATACCCTCTTGAG+TGG | - | chr4.1:13620239-13620258 | MS.gene53408:intron | 45.0% | |
| ATCTCATTTCTTCCGCTCCT+TGG | - | chr4.1:13620112-13620131 | MS.gene53408:CDS | 45.0% | |
| ATGCTGTTCTGTCCTTTCTC+AGG | - | chr4.1:13619624-13619643 | MS.gene53408:CDS | 45.0% | |
| ATTCCATACCCTCTTGAGTG+GGG | - | chr4.1:13620241-13620260 | MS.gene53408:intron | 45.0% | |
| CATATCTCATCTCGTCTCAG+GGG | - | chr4.1:13621247-13621266 | MS.gene53408:intron | 45.0% | |
| CCAAAGATAGAGGAATGCCA+TGG | - | chr4.1:13621551-13621570 | MS.gene53408:intron | 45.0% | |
| CCATGGCATTCCTCTATCTT+TGG | + | chr4.1:13621554-13621573 | None:intergenic | 45.0% | |
| CCATGTTTGTGTATCTCCAG+AGG | - | chr4.1:13619208-13619227 | MS.gene53408:intron | 45.0% | |
| CCCAAAAGAGGAAAATCTGG+TGG | - | chr4.1:13618808-13618827 | MS.gene53408:intron | 45.0% | |
| GATGCTATTGGTACCAACCA+AGG | + | chr4.1:13620132-13620151 | None:intergenic | 45.0% | |
| GATTCCATACCCTCTTGAGT+GGG | - | chr4.1:13620240-13620259 | MS.gene53408:intron | 45.0% | |
| GCAGGATGATAAAGTAAGGG+TGG | - | chr4.1:13618897-13618916 | MS.gene53408:CDS | 45.0% | |
| GTGCTCCTACATTTGATGCT+GGG | - | chr4.1:13620263-13620282 | MS.gene53408:intron | 45.0% | |
| GTGGGGACTTGTGTTGAAAT+TGG | - | chr4.1:13619646-13619665 | MS.gene53408:intron | 45.0% | |
| TACACTATCAGGGCCTTTCA+TGG | - | chr4.1:13621164-13621183 | MS.gene53408:intron | 45.0% | |
| TATGTTGAGTTACATCCGGC+CGG | + | chr4.1:13620071-13620090 | None:intergenic | 45.0% | |
| TATTGGTACCAACCAAGGAG+CGG | + | chr4.1:13620127-13620146 | None:intergenic | 45.0% | |
| TGCATATGCCCATATCACTG+TGG | + | chr4.1:13620016-13620035 | None:intergenic | 45.0% | |
| TGCTCATACCAAAGCTGGAT+GGG | - | chr4.1:13621190-13621209 | MS.gene53408:intron | 45.0% | |
| TGTTCTGTCCTTTCTCAGGT+GGG | - | chr4.1:13619628-13619647 | MS.gene53408:CDS | 45.0% | |
| ! | CCTCTGGAGATACACAAACA+TGG | + | chr4.1:13619211-13619230 | None:intergenic | 45.0% |
| ! | GTTCTAAACTTAGCCCACCA+TGG | + | chr4.1:13621571-13621590 | None:intergenic | 45.0% |
| ! | TGCAAACACTGTTTGGAACC+CGG | - | chr4.1:13618959-13618978 | MS.gene53408:intron | 45.0% |
| ! | TTTGATGCTGGGCACTCTTT+TGG | - | chr4.1:13620274-13620293 | MS.gene53408:CDS | 45.0% |
| !! | CTCCTATCACTGTTGGTAAC+CGG | + | chr4.1:13618981-13619000 | None:intergenic | 45.0% |
| !! | TCCTATCACTGTTGGTAACC+GGG | + | chr4.1:13618980-13618999 | None:intergenic | 45.0% |
| !! | TGCAGATTTTTCAGCCCACT+TGG | - | chr4.1:13619458-13619477 | MS.gene53408:intron | 45.0% |
| !!! | ACTGGTGTTGCCCTTTTCTT+AGG | - | chr4.1:13621113-13621132 | MS.gene53408:intron | 45.0% |
| !!! | TGGGCACTCTTTTGGAATGA+TGG | - | chr4.1:13620282-13620301 | MS.gene53408:CDS | 45.0% |
| ACCCGGTTACCAACAGTGAT+AGG | - | chr4.1:13618976-13618995 | MS.gene53408:intron | 50.0% | |
| AGCACAATGAGAGCAGTCCA+AGG | - | chr4.1:13619237-13619256 | MS.gene53408:intron | 50.0% | |
| CATTTCTTCCGCTCCTTGGT+TGG | - | chr4.1:13620116-13620135 | MS.gene53408:intron | 50.0% | |
| CGAGTGGAGCATACAAACAC+CGG | - | chr4.1:13620049-13620068 | MS.gene53408:intron | 50.0% | |
| CGGTTACCAACAGTGATAGG+AGG | - | chr4.1:13618979-13618998 | MS.gene53408:intron | 50.0% | |
| CTCTTGACACATGTTGGTGC+AGG | - | chr4.1:13620212-13620231 | MS.gene53408:intron | 50.0% | |
| CTGCTCATACCAAAGCTGGA+TGG | - | chr4.1:13621189-13621208 | MS.gene53408:intron | 50.0% | |
| CTGTTCTGTCCTTTCTCAGG+TGG | - | chr4.1:13619627-13619646 | MS.gene53408:CDS | 50.0% | |
| GAAACTCACCCATCCAGCTT+TGG | + | chr4.1:13621201-13621220 | None:intergenic | 50.0% | |
| GAGTGCCCAGCATCAAATGT+AGG | + | chr4.1:13620271-13620290 | None:intergenic | 50.0% | |
| GCACATCTATTGACAGCGAG+TGG | - | chr4.1:13620033-13620052 | MS.gene53408:intron | 50.0% | |
| GGGCAACACCAGTGATAAAG+AGG | + | chr4.1:13621106-13621125 | None:intergenic | 50.0% | |
| GGTATGAGCAGGACCATGAA+AGG | + | chr4.1:13621180-13621199 | None:intergenic | 50.0% | |
| GGTGCTCCTACATTTGATGC+TGG | - | chr4.1:13620262-13620281 | MS.gene53408:intron | 50.0% | |
| GTTCTGTCCTTTCTCAGGTG+GGG | - | chr4.1:13619629-13619648 | MS.gene53408:intron | 50.0% | |
| ! | CATCCAGCTTTGGTATGAGC+AGG | + | chr4.1:13621191-13621210 | None:intergenic | 50.0% |
| ! | GGCCTTTTCGGAACACTAAC+CGG | - | chr4.1:13620556-13620575 | MS.gene53408:CDS | 50.0% |
| !! | ACTGACTGGTTCGACTCGTT+CGG | + | chr4.1:13618116-13618135 | None:intergenic | 50.0% |
| CACAAGTCCCCACCTGAGAA+AGG | + | chr4.1:13619639-13619658 | None:intergenic | 55.0% | |
| CATGTCCTGAGCCGTGGTAT+CGG | - | chr4.1:13620505-13620524 | MS.gene53408:intron | 55.0% | |
| CTCCTAGGAAGCAACCGTGT+TGG | - | chr4.1:13620689-13620708 | MS.gene53408:intron | 55.0% | |
| GGTCCTGCTCATACCAAAGC+TGG | - | chr4.1:13621185-13621204 | MS.gene53408:intron | 55.0% | |
| TAACCCTTCGGCTGCCAACA+CGG | + | chr4.1:13620706-13620725 | None:intergenic | 55.0% | |
| TGCCAACACGGTTGCTTCCT+AGG | + | chr4.1:13620694-13620713 | None:intergenic | 55.0% | |
| TGGAGCATACAAACACCGGC+CGG | - | chr4.1:13620053-13620072 | MS.gene53408:intron | 55.0% | |
| TTCCCTGCCAACCGATACCA+CGG | + | chr4.1:13620519-13620538 | None:intergenic | 55.0% | |
| !! | AGTGGTGGGTCTCCCAAAAG+AGG | - | chr4.1:13618796-13618815 | MS.gene53408:intron | 55.0% |
| !! | GGTATCGGTTGGCAGGGAAT+TGG | - | chr4.1:13620520-13620539 | MS.gene53408:CDS | 55.0% |
| !! | TAGGAGCACCCCACTCAAGA+GGG | + | chr4.1:13620252-13620271 | None:intergenic | 55.0% |
| GCACCCCACTCAAGAGGGTA+TGG | + | chr4.1:13620247-13620266 | None:intergenic | 60.0% | |
| ! | CAACCGTGTTGGCAGCCGAA+GGG | - | chr4.1:13620700-13620719 | MS.gene53408:intron | 60.0% |
| !! | AGCCGTGGTATCGGTTGGCA+GGG | - | chr4.1:13620514-13620533 | MS.gene53408:intron | 60.0% |
| !! | GTAGGAGCACCCCACTCAAG+AGG | + | chr4.1:13620253-13620272 | None:intergenic | 60.0% |
| !! | TCCTGAGCCGTGGTATCGGT+TGG | - | chr4.1:13620509-13620528 | MS.gene53408:intron | 60.0% |
| CCACGGCTCAGGACATGAGC+AGG | + | chr4.1:13620502-13620521 | None:intergenic | 65.0% | |
| CCTGCTCATGTCCTGAGCCG+TGG | - | chr4.1:13620499-13620518 | MS.gene53408:intron | 65.0% | |
| CGGCTCAGGACATGAGCAGG+CGG | + | chr4.1:13620499-13620518 | None:intergenic | 65.0% | |
| CTCAGGACATGAGCAGGCGG+TGG | + | chr4.1:13620496-13620515 | None:intergenic | 65.0% | |
| GACATGAGCAGGCGGTGGTG+TGG | + | chr4.1:13620491-13620510 | None:intergenic | 65.0% | |
| GCCAACCGATACCACGGCTC+AGG | + | chr4.1:13620513-13620532 | None:intergenic | 65.0% | |
| ! | GCAACCGTGTTGGCAGCCGA+AGG | - | chr4.1:13620699-13620718 | MS.gene53408:intron | 65.0% |
| !! | GAGCCGTGGTATCGGTTGGC+AGG | - | chr4.1:13620513-13620532 | MS.gene53408:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13617930 | 13621666 | 13617930 | ID=MS.gene53408 |
| chr4.1 | mRNA | 13617930 | 13621666 | 13617930 | ID=MS.gene53408.t1;Parent=MS.gene53408 |
| chr4.1 | exon | 13621652 | 13621666 | 13621652 | ID=MS.gene53408.t1.exon1;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13621652 | 13621666 | 13621652 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13620519 | 13620695 | 13620519 | ID=MS.gene53408.t1.exon2;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13620519 | 13620695 | 13620519 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13620268 | 13620368 | 13620268 | ID=MS.gene53408.t1.exon3;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13620268 | 13620368 | 13620268 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13620058 | 13620133 | 13620058 | ID=MS.gene53408.t1.exon4;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13620058 | 13620133 | 13620058 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13619891 | 13619950 | 13619891 | ID=MS.gene53408.t1.exon5;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13619891 | 13619950 | 13619891 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13619463 | 13619647 | 13619463 | ID=MS.gene53408.t1.exon6;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13619463 | 13619647 | 13619463 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13619266 | 13619362 | 13619266 | ID=MS.gene53408.t1.exon7;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13619266 | 13619362 | 13619266 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13619003 | 13619148 | 13619003 | ID=MS.gene53408.t1.exon8;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13619003 | 13619148 | 13619003 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13618829 | 13618920 | 13618829 | ID=MS.gene53408.t1.exon9;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13618829 | 13618920 | 13618829 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13618642 | 13618719 | 13618642 | ID=MS.gene53408.t1.exon10;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13618642 | 13618719 | 13618642 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13618385 | 13618545 | 13618385 | ID=MS.gene53408.t1.exon11;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13618385 | 13618545 | 13618385 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| chr4.1 | exon | 13617930 | 13618142 | 13617930 | ID=MS.gene53408.t1.exon12;Parent=MS.gene53408.t1 |
| chr4.1 | CDS | 13617930 | 13618142 | 13617930 | ID=cds.MS.gene53408.t1;Parent=MS.gene53408.t1 |
| Gene Sequence |
| Protein sequence |
