Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88112.t1 | XP_003607601.1 | 94.1 | 286 | 5 | 1 | 44 | 317 | 128 | 413 | 1.10E-140 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88112.t1 | Q9SJI7 | 55.1 | 296 | 115 | 2 | 35 | 317 | 95 | 385 | 8.3e-86 | 318.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88112.t1 | G7JCM9 | 94.1 | 286 | 5 | 1 | 44 | 317 | 128 | 413 | 7.6e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene88112 | 0.804146 | 2.48E-49 | -1.69E-46 |
| MS.gene050430 | MS.gene88112 | 0.802804 | 4.71E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene88112 | 0.809616 | 1.73E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene88112 | 0.820589 | 6.33E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene88112 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene88112 | 0.812852 | 3.44E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene88112 | 0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene88112 | 0.842026 | 3.32E-58 | -1.69E-46 |
| MS.gene052333 | MS.gene88112 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene88112 | 0.83436 | 3.13E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene88112 | 0.8218 | 3.33E-53 | -1.69E-46 |
| MS.gene053512 | MS.gene88112 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene053584 | MS.gene88112 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene053998 | MS.gene88112 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene88112 | 0.808888 | 2.48E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene88112 | 0.820567 | 6.41E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene88112 | 0.819598 | 1.07E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene88112 | 0.807673 | 4.51E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene88112 | 0.820284 | 7.44E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene88112 | 0.83082 | 2.37E-55 | -1.69E-46 |
| MS.gene055357 | MS.gene88112 | 0.825999 | 3.45E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene88112 | 0.828515 | 8.61E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene88112 | 0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene055875 | MS.gene88112 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene88112 | 0.801815 | 7.54E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene88112 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene88112 | 0.801101 | 1.06E-48 | -1.69E-46 |
| MS.gene057639 | MS.gene88112 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene057656 | MS.gene88112 | 0.815105 | 1.10E-51 | -1.69E-46 |
| MS.gene057755 | MS.gene88112 | 0.830133 | 3.49E-55 | -1.69E-46 |
| MS.gene057756 | MS.gene88112 | 0.810217 | 1.29E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene88112 | 0.806868 | 6.67E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene88112 | 0.821586 | 3.73E-53 | -1.69E-46 |
| MS.gene059382 | MS.gene88112 | 0.810587 | 1.07E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene88112 | 0.839395 | 1.63E-57 | -1.69E-46 |
| MS.gene060137 | MS.gene88112 | -0.802367 | 5.80E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene88112 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene060312 | MS.gene88112 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene88112 | 0.814458 | 1.53E-51 | -1.69E-46 |
| MS.gene060553 | MS.gene88112 | 0.813725 | 2.21E-51 | -1.69E-46 |
| MS.gene060919 | MS.gene88112 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene88112 | -0.817753 | 2.80E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88112.t1 | MTR_4g080100 | 86.709 | 316 | 29 | 2 | 14 | 317 | 99 | 413 | 0.0 | 547 |
| MS.gene88112.t1 | MTR_2g015690 | 43.197 | 294 | 122 | 4 | 44 | 317 | 122 | 390 | 1.13e-72 | 230 |
| MS.gene88112.t1 | MTR_4g087830 | 36.735 | 294 | 135 | 5 | 44 | 317 | 107 | 369 | 3.62e-53 | 179 |
| MS.gene88112.t1 | MTR_4g087810 | 36.486 | 296 | 133 | 6 | 44 | 317 | 116 | 378 | 1.79e-51 | 175 |
| MS.gene88112.t1 | MTR_7g096120 | 33.010 | 309 | 143 | 5 | 45 | 315 | 174 | 456 | 4.42e-48 | 168 |
| MS.gene88112.t1 | MTR_7g096140 | 32.143 | 308 | 147 | 5 | 45 | 315 | 174 | 456 | 2.08e-47 | 166 |
| MS.gene88112.t1 | MTR_4g077070 | 32.087 | 321 | 147 | 8 | 37 | 315 | 188 | 479 | 3.23e-43 | 156 |
| MS.gene88112.t1 | MTR_5g013230 | 29.795 | 292 | 136 | 8 | 47 | 296 | 231 | 495 | 1.84e-31 | 124 |
| MS.gene88112.t1 | MTR_7g006400 | 32.584 | 267 | 106 | 10 | 51 | 277 | 199 | 431 | 1.16e-27 | 112 |
| MS.gene88112.t1 | MTR_4g099510 | 30.796 | 289 | 128 | 7 | 47 | 296 | 225 | 480 | 9.25e-27 | 110 |
| MS.gene88112.t1 | MTR_7g081645 | 31.985 | 272 | 136 | 10 | 48 | 295 | 175 | 421 | 6.21e-26 | 107 |
| MS.gene88112.t1 | MTR_7g081620 | 29.703 | 303 | 139 | 9 | 48 | 297 | 169 | 450 | 1.07e-25 | 106 |
| MS.gene88112.t1 | MTR_1995s0010 | 29.150 | 247 | 113 | 4 | 68 | 277 | 1 | 222 | 1.30e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88112.t1 | AT2G42690 | 54.459 | 314 | 118 | 4 | 21 | 318 | 82 | 386 | 1.38e-111 | 330 |
| MS.gene88112.t1 | AT4G18550 | 39.016 | 305 | 137 | 6 | 35 | 317 | 113 | 390 | 7.00e-63 | 205 |
| MS.gene88112.t1 | AT4G18550 | 39.016 | 305 | 137 | 6 | 35 | 317 | 130 | 407 | 8.87e-63 | 205 |
| MS.gene88112.t1 | AT1G06250 | 37.716 | 289 | 134 | 4 | 48 | 315 | 111 | 374 | 1.73e-56 | 189 |
| MS.gene88112.t1 | AT1G06250 | 37.544 | 285 | 132 | 4 | 52 | 315 | 1 | 260 | 4.77e-55 | 182 |
| MS.gene88112.t1 | AT2G30550 | 33.439 | 314 | 137 | 8 | 45 | 315 | 200 | 484 | 1.35e-45 | 162 |
| MS.gene88112.t1 | AT1G51440 | 34.069 | 317 | 134 | 9 | 45 | 315 | 187 | 474 | 5.15e-44 | 158 |
| MS.gene88112.t1 | AT1G06800 | 34.286 | 315 | 134 | 10 | 45 | 315 | 184 | 469 | 5.17e-42 | 152 |
| MS.gene88112.t1 | AT1G30370 | 29.934 | 304 | 156 | 6 | 44 | 316 | 212 | 489 | 4.51e-37 | 139 |
| MS.gene88112.t1 | AT2G30550 | 32.616 | 279 | 116 | 8 | 45 | 280 | 200 | 449 | 2.59e-36 | 136 |
| MS.gene88112.t1 | AT1G06800 | 33.692 | 279 | 112 | 10 | 45 | 279 | 184 | 433 | 3.34e-33 | 127 |
| MS.gene88112.t1 | AT4G18550 | 34.928 | 209 | 91 | 4 | 35 | 223 | 130 | 313 | 3.96e-33 | 124 |
| MS.gene88112.t1 | AT2G31690 | 30.970 | 268 | 117 | 8 | 46 | 277 | 185 | 420 | 1.91e-28 | 114 |
| MS.gene88112.t1 | AT1G05800 | 31.321 | 265 | 114 | 6 | 49 | 277 | 177 | 409 | 2.18e-26 | 108 |
| MS.gene88112.t1 | AT4G16820 | 28.374 | 289 | 140 | 8 | 47 | 295 | 217 | 478 | 2.47e-26 | 109 |
| MS.gene88112.t1 | AT2G44810 | 30.000 | 290 | 131 | 10 | 48 | 295 | 96 | 355 | 2.73e-22 | 96.3 |
| MS.gene88112.t1 | AT2G44810 | 30.000 | 290 | 131 | 10 | 48 | 295 | 186 | 445 | 8.71e-22 | 95.5 |
Find 82 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCTTATTATTGTTGTTT+GGG | 0.238162 | 4.2:-73054822 | None:intergenic |
| CCTCCCAAACAACAATAATA+AGG | 0.244272 | 4.2:+73054819 | MS.gene88112:CDS |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4.2:+73055544 | MS.gene88112:CDS |
| CCGTTTACTGCATTTGTGTT+TGG | 0.278706 | 4.2:+73055424 | MS.gene88112:CDS |
| ACCAACCCTTCATTACTTTA+GGG | 0.280032 | 4.2:-73055200 | None:intergenic |
| GTACCCTTATTATTGTTGTT+TGG | 0.286185 | 4.2:-73054823 | None:intergenic |
| CGTTTACTGCATTTGTGTTT+GGG | 0.289332 | 4.2:+73055425 | MS.gene88112:CDS |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4.2:+73055543 | MS.gene88112:CDS |
| AACCAACCCTTCATTACTTT+AGG | 0.305402 | 4.2:-73055201 | None:intergenic |
| GCTGCTCCTGAATCTGCTTC+TGG | 0.315313 | 4.2:+73054763 | MS.gene88112:CDS |
| GGAATAAAGCTTTCAATGAT+AGG | 0.357385 | 4.2:+73055461 | MS.gene88112:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4.2:+73055680 | MS.gene88112:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4.2:+73055711 | MS.gene88112:CDS |
| AAGCTTTATTCCCAACTTGC+GGG | 0.376152 | 4.2:-73055450 | None:intergenic |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.380761 | 4.2:+73054626 | MS.gene88112:CDS |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4.2:+73055679 | MS.gene88112:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4.2:+73055690 | MS.gene88112:CDS |
| CCAAACACAAATGCAGTAAA+CGG | 0.418769 | 4.2:-73055424 | None:intergenic |
| TGTTTGGGTCCCCGCAAGTT+GGG | 0.424638 | 4.2:+73055440 | MS.gene88112:CDS |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4.2:+73055670 | MS.gene88112:CDS |
| CATGACTTTGTTGAAGAATG+AGG | 0.431066 | 4.2:-73054505 | None:intergenic |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4.2:+73055744 | MS.gene88112:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4.2:+73055330 | MS.gene88112:CDS |
| CTCCCAAACAACAATAATAA+GGG | 0.439311 | 4.2:+73054820 | MS.gene88112:CDS |
| AACAAACCAGAAGCAGATTC+AGG | 0.440065 | 4.2:-73054769 | None:intergenic |
| GATCTTATACCACATTATCC+AGG | 0.444039 | 4.2:+73055532 | MS.gene88112:CDS |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4.2:-73054591 | None:intergenic |
| TGCCGGCGTCATGGTGGGTT+AGG | 0.457831 | 4.2:+73055779 | MS.gene88112:CDS |
| CTTGAATGGATTAACGTGTT+TGG | 0.465861 | 4.2:+73054739 | MS.gene88112:CDS |
| GTGGGTTAGGTATGGTGCGT+AGG | 0.467712 | 4.2:+73055792 | MS.gene88112:CDS |
| GTACTACAAGGGACCTTGAA+TGG | 0.467880 | 4.2:+73054725 | MS.gene88112:CDS |
| ATTCGAAGAATCCTAGTGAT+TGG | 0.468076 | 4.2:+73055626 | MS.gene88112:CDS |
| GAGAGTCCCTAAAGTAATGA+AGG | 0.471259 | 4.2:+73055194 | MS.gene88112:CDS |
| CACTCACTATCACGTGAGTT+GGG | 0.482287 | 4.2:+73054609 | MS.gene88112:CDS |
| CCTTATTATTGTTGTTTGGG+AGG | 0.489521 | 4.2:-73054819 | None:intergenic |
| GTGTTTGGGTCCCCGCAAGT+TGG | 0.489564 | 4.2:+73055439 | MS.gene88112:CDS |
| TTATTGGGGTATGAGTATAC+AGG | 0.493548 | 4.2:+73055559 | MS.gene88112:CDS |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4.2:+73055770 | MS.gene88112:CDS |
| CAAACACAAATGCAGTAAAC+GGG | 0.496631 | 4.2:-73055423 | None:intergenic |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4.2:+73055704 | MS.gene88112:CDS |
| CAAACACGTTAATCCATTCA+AGG | 0.503129 | 4.2:-73054738 | None:intergenic |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.507752 | 4.2:+73055199 | MS.gene88112:CDS |
| GCGTCATGGTGGGTTAGGTA+TGG | 0.509549 | 4.2:+73055784 | MS.gene88112:CDS |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4.2:+73055696 | MS.gene88112:CDS |
| AAACAACAGTGTAGTGTGTA+GGG | 0.515742 | 4.2:-73054536 | None:intergenic |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4.2:+73054672 | MS.gene88112:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4.2:+73055671 | MS.gene88112:CDS |
| TCACTCACTATCACGTGAGT+TGG | 0.520669 | 4.2:+73054608 | MS.gene88112:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4.2:+73055657 | MS.gene88112:CDS |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4.2:-73054671 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4.2:+73054631 | MS.gene88112:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4.2:+73055661 | MS.gene88112:CDS |
| TCATACCCCAATAACTTCCC+TGG | 0.532892 | 4.2:-73055550 | None:intergenic |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4.2:+73055773 | MS.gene88112:CDS |
| GAAACAACAGTGTAGTGTGT+AGG | 0.540411 | 4.2:-73054537 | None:intergenic |
| TCACGTGCCGGCGTCATGGT+GGG | 0.541798 | 4.2:+73055774 | MS.gene88112:CDS |
| AAAGCTTTATTCCCAACTTG+CGG | 0.543742 | 4.2:-73055451 | None:intergenic |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4.2:+73055665 | MS.gene88112:CDS |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4.2:+73054673 | MS.gene88112:CDS |
| TGGGTTAGGTATGGTGCGTA+GGG | 0.550429 | 4.2:+73055793 | MS.gene88112:CDS |
| ATCTTATACCACATTATCCA+GGG | 0.566732 | 4.2:+73055533 | MS.gene88112:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4.2:+73055545 | MS.gene88112:CDS |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4.2:-73055333 | None:intergenic |
| AATAACTTCCCTGGATAATG+TGG | 0.577975 | 4.2:-73055541 | None:intergenic |
| AGCTTTATTCCCAACTTGCG+GGG | 0.579031 | 4.2:-73055449 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4.2:+73054659 | MS.gene88112:CDS |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4.2:+73055681 | MS.gene88112:CDS |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4.2:+73055762 | MS.gene88112:CDS |
| TACCTAACCCACCATGACGC+CGG | 0.590563 | 4.2:-73055781 | None:intergenic |
| TGCAAATTATGCCAATCACT+AGG | 0.595847 | 4.2:-73055637 | None:intergenic |
| TTGTGTGGCGTGGTACTACA+AGG | 0.605960 | 4.2:+73054713 | MS.gene88112:CDS |
| TGAGTATACAGGGACAGAGT+TGG | 0.607194 | 4.2:+73055570 | MS.gene88112:CDS |
| AGAGTCCCTAAAGTAATGAA+GGG | 0.619750 | 4.2:+73055195 | MS.gene88112:CDS |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4.2:+73055320 | MS.gene88112:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4.2:+73055342 | MS.gene88112:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4.2:+73055164 | MS.gene88112:CDS |
| TATTGGGGTATGAGTATACA+GGG | 0.649833 | 4.2:+73055560 | MS.gene88112:CDS |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4.2:+73054698 | MS.gene88112:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4.2:-73054633 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4.2:+73054703 | MS.gene88112:CDS |
| ATACACGTGCAGTAGCGTAG+AGG | 0.716295 | 4.2:-73054563 | None:intergenic |
| TGTGTGGCGTGGTACTACAA+GGG | 0.775410 | 4.2:+73054714 | MS.gene88112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATCTAAAAATGAATA+TGG | - | chr4.2:73054890-73054909 | None:intergenic | 15.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | + | chr4.2:73055486-73055505 | MS.gene88112:CDS | 20.0% |
| !! | CGTTACATATACTTTATAAA+TGG | - | chr4.2:73055100-73055119 | None:intergenic | 20.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | - | chr4.2:73055248-73055267 | None:intergenic | 25.0% |
| !!! | TACCCTTATTATTGTTGTTT+GGG | - | chr4.2:73054825-73054844 | None:intergenic | 25.0% |
| AAAACTTATACAAACTCACC+TGG | - | chr4.2:73054934-73054953 | None:intergenic | 30.0% | |
| ATCTTATACCACATTATCCA+GGG | + | chr4.2:73055533-73055552 | MS.gene88112:CDS | 30.0% | |
| CTCCCAAACAACAATAATAA+GGG | + | chr4.2:73054820-73054839 | MS.gene88112:CDS | 30.0% | |
| GGAATAAAGCTTTCAATGAT+AGG | + | chr4.2:73055461-73055480 | MS.gene88112:CDS | 30.0% | |
| ! | AACATACTTAAACTGATTCC+AGG | + | chr4.2:73054913-73054932 | MS.gene88112:intron | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | + | chr4.2:73055500-73055519 | MS.gene88112:CDS | 30.0% |
| ! | GTACCCTTATTATTGTTGTT+TGG | - | chr4.2:73054826-73054845 | None:intergenic | 30.0% |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | - | chr4.2:73055249-73055268 | None:intergenic | 30.0% |
| ! | TAAGTCTTGTGATTACTTGA+AGG | + | chr4.2:73055744-73055763 | MS.gene88112:CDS | 30.0% |
| AAACAACAGTGTAGTGTGTA+GGG | - | chr4.2:73054539-73054558 | None:intergenic | 35.0% | |
| AACCAACCCTTCATTACTTT+AGG | - | chr4.2:73055204-73055223 | None:intergenic | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | - | chr4.2:73055544-73055563 | None:intergenic | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | + | chr4.2:73055330-73055349 | MS.gene88112:CDS | 35.0% | |
| AATTGTGAGTGCGTTTGATT+TGG | + | chr4.2:73055377-73055396 | MS.gene88112:intron | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | + | chr4.2:73055543-73055562 | MS.gene88112:CDS | 35.0% | |
| ACCAACCCTTCATTACTTTA+GGG | - | chr4.2:73055203-73055222 | None:intergenic | 35.0% | |
| AGAGTCCCTAAAGTAATGAA+GGG | + | chr4.2:73055195-73055214 | MS.gene88112:CDS | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | + | chr4.2:73055545-73055564 | MS.gene88112:CDS | 35.0% | |
| ATTCGAAGAATCCTAGTGAT+TGG | + | chr4.2:73055626-73055645 | MS.gene88112:CDS | 35.0% | |
| CAAACACAAATGCAGTAAAC+GGG | - | chr4.2:73055426-73055445 | None:intergenic | 35.0% | |
| CAAACACGTTAATCCATTCA+AGG | - | chr4.2:73054741-73054760 | None:intergenic | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | + | chr4.2:73055320-73055339 | MS.gene88112:CDS | 35.0% | |
| CATGACTTTGTTGAAGAATG+AGG | - | chr4.2:73054508-73054527 | None:intergenic | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | + | chr4.2:73055544-73055563 | MS.gene88112:CDS | 35.0% | |
| CCAAACACAAATGCAGTAAA+CGG | - | chr4.2:73055427-73055446 | None:intergenic | 35.0% | |
| CCTCCCAAACAACAATAATA+AGG | + | chr4.2:73054819-73054838 | MS.gene88112:CDS | 35.0% | |
| CGTTTACTGCATTTGTGTTT+GGG | + | chr4.2:73055425-73055444 | MS.gene88112:CDS | 35.0% | |
| GAGTGAAGAATAAAAGCTTC+AGG | - | chr4.2:73054594-73054613 | None:intergenic | 35.0% | |
| GATCTTATACCACATTATCC+AGG | + | chr4.2:73055532-73055551 | MS.gene88112:CDS | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | + | chr4.2:73055342-73055361 | MS.gene88112:CDS | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | + | chr4.2:73054698-73054717 | MS.gene88112:CDS | 35.0% | |
| TATTGGGGTATGAGTATACA+GGG | + | chr4.2:73055560-73055579 | MS.gene88112:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+AGG | - | chr4.2:73055640-73055659 | None:intergenic | 35.0% | |
| TTATTGGGGTATGAGTATAC+AGG | + | chr4.2:73055559-73055578 | MS.gene88112:CDS | 35.0% | |
| !! | AAAGCTTTATTCCCAACTTG+CGG | - | chr4.2:73055454-73055473 | None:intergenic | 35.0% |
| !! | CCTTATTATTGTTGTTTGGG+AGG | - | chr4.2:73054822-73054841 | None:intergenic | 35.0% |
| !! | CTTGAATGGATTAACGTGTT+TGG | + | chr4.2:73054739-73054758 | MS.gene88112:CDS | 35.0% |
| AAAAACAAGCGTGAGAACAC+AGG | + | chr4.2:73055263-73055282 | MS.gene88112:CDS | 40.0% | |
| AACAAACCAGAAGCAGATTC+AGG | - | chr4.2:73054772-73054791 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | - | chr4.2:73054636-73054655 | None:intergenic | 40.0% | |
| CCGTTTACTGCATTTGTGTT+TGG | + | chr4.2:73055424-73055443 | MS.gene88112:CDS | 40.0% | |
| GAAACAACAGTGTAGTGTGT+AGG | - | chr4.2:73054540-73054559 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | + | chr4.2:73054703-73054722 | MS.gene88112:CDS | 40.0% | |
| GAGAGTCCCTAAAGTAATGA+AGG | + | chr4.2:73055194-73055213 | MS.gene88112:CDS | 40.0% | |
| GCAAGCTATGTTGCATATTG+TGG | + | chr4.2:73055657-73055676 | MS.gene88112:CDS | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | + | chr4.2:73055199-73055218 | MS.gene88112:CDS | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | - | chr4.2:73055336-73055355 | None:intergenic | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | + | chr4.2:73055671-73055690 | MS.gene88112:CDS | 40.0% |
| !! | AAGCTTTATTCCCAACTTGC+GGG | - | chr4.2:73055453-73055472 | None:intergenic | 40.0% |
| !!! | CTCACGCTTGTTTTTGTGAA+AGG | - | chr4.2:73055258-73055277 | None:intergenic | 40.0% |
| CAACTCTCTACTCCGTTCAT+CGG | - | chr4.2:73054674-73054693 | None:intergenic | 45.0% | |
| CACTCACTATCACGTGAGTT+GGG | + | chr4.2:73054609-73054628 | MS.gene88112:CDS | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | + | chr4.2:73054673-73054692 | MS.gene88112:CDS | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | + | chr4.2:73055661-73055680 | MS.gene88112:CDS | 45.0% | |
| GTACTACAAGGGACCTTGAA+TGG | + | chr4.2:73054725-73054744 | MS.gene88112:CDS | 45.0% | |
| TCACTCACTATCACGTGAGT+TGG | + | chr4.2:73054608-73054627 | MS.gene88112:CDS | 45.0% | |
| TCATACCCCAATAACTTCCC+TGG | - | chr4.2:73055553-73055572 | None:intergenic | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | + | chr4.2:73054659-73054678 | MS.gene88112:CDS | 45.0% | |
| TGAGTATACAGGGACAGAGT+TGG | + | chr4.2:73055570-73055589 | MS.gene88112:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | + | chr4.2:73055665-73055684 | MS.gene88112:CDS | 45.0% | |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | + | chr4.2:73055704-73055723 | MS.gene88112:CDS | 45.0% |
| ! | CATATTGTGGCTGGTTGGAA+TGG | + | chr4.2:73055670-73055689 | MS.gene88112:CDS | 45.0% |
| !! | AGCTTTATTCCCAACTTGCG+GGG | - | chr4.2:73055452-73055471 | None:intergenic | 45.0% |
| !! | GCGTTTGATTTGGTGGAGAA+CGG | + | chr4.2:73055387-73055406 | MS.gene88112:intron | 45.0% |
| !! | TGTGAGTGCGTTTGATTTGG+TGG | + | chr4.2:73055380-73055399 | MS.gene88112:intron | 45.0% |
| ATACACGTGCAGTAGCGTAG+AGG | - | chr4.2:73054566-73054585 | None:intergenic | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | + | chr4.2:73054672-73054691 | MS.gene88112:CDS | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | + | chr4.2:73055680-73055699 | MS.gene88112:CDS | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | + | chr4.2:73054631-73054650 | MS.gene88112:CDS | 50.0% | |
| GGTGAAGGTGAAGAGGAGTT+TGG | + | chr4.2:73055711-73055730 | MS.gene88112:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | + | chr4.2:73055681-73055700 | MS.gene88112:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACAA+GGG | + | chr4.2:73054714-73054733 | MS.gene88112:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACA+AGG | + | chr4.2:73054713-73054732 | MS.gene88112:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | + | chr4.2:73055696-73055715 | MS.gene88112:CDS | 50.0% |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | - | chr4.2:73055238-73055257 | None:intergenic | 50.0% |
| GCTGCTCCTGAATCTGCTTC+TGG | + | chr4.2:73054763-73054782 | MS.gene88112:CDS | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | + | chr4.2:73055679-73055698 | MS.gene88112:CDS | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | + | chr4.2:73054626-73054645 | MS.gene88112:CDS | 55.0% | |
| TACCTAACCCACCATGACGC+CGG | - | chr4.2:73055784-73055803 | None:intergenic | 55.0% | |
| TAGCAGCAGCAGTGACGATG+AGG | + | chr4.2:73055164-73055183 | MS.gene88112:CDS | 55.0% | |
| TGTTTGGGTCCCCGCAAGTT+GGG | + | chr4.2:73055440-73055459 | MS.gene88112:CDS | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | + | chr4.2:73055690-73055709 | MS.gene88112:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | + | chr4.2:73055762-73055781 | MS.gene88112:CDS | 55.0% |
| !! | GCGTCATGGTGGGTTAGGTA+TGG | + | chr4.2:73055784-73055803 | MS.gene88112:CDS | 55.0% |
| GTGTTTGGGTCCCCGCAAGT+TGG | + | chr4.2:73055439-73055458 | MS.gene88112:CDS | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | + | chr4.2:73055770-73055789 | MS.gene88112:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | + | chr4.2:73055774-73055793 | MS.gene88112:CDS | 65.0% |
| !! | TGCCGGCGTCATGGTGGGTT+AGG | + | chr4.2:73055779-73055798 | MS.gene88112:CDS | 65.0% |
| ! | GTCACGTGCCGGCGTCATGG+TGG | + | chr4.2:73055773-73055792 | MS.gene88112:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 73054496 | 73055813 | 73054496 | ID=MS.gene88112 |
| chr4.2 | mRNA | 73054496 | 73055813 | 73054496 | ID=MS.gene88112.t1;Parent=MS.gene88112 |
| chr4.2 | exon | 73054496 | 73054841 | 73054496 | ID=MS.gene88112.t1.exon1;Parent=MS.gene88112.t1 |
| chr4.2 | CDS | 73054496 | 73054841 | 73054496 | ID=cds.MS.gene88112.t1;Parent=MS.gene88112.t1 |
| chr4.2 | exon | 73055157 | 73055380 | 73055157 | ID=MS.gene88112.t1.exon2;Parent=MS.gene88112.t1 |
| chr4.2 | CDS | 73055157 | 73055380 | 73055157 | ID=cds.MS.gene88112.t1;Parent=MS.gene88112.t1 |
| chr4.2 | exon | 73055418 | 73055813 | 73055418 | ID=MS.gene88112.t1.exon3;Parent=MS.gene88112.t1 |
| chr4.2 | CDS | 73055418 | 73055813 | 73055418 | ID=cds.MS.gene88112.t1;Parent=MS.gene88112.t1 |
| Gene Sequence |
| Protein sequence |
