AlfalfaGEDB | MS.gene90899

M. sativa cultivar XinJiangDaYe / MS.gene90899

KEGG: -
GO: -
PFAM: PF01190.20 PF04554.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90899.t1	RHN82809.1	100	139	0	0	388	526	422	560	4.70E-70	276.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90899.t1	A0A072VSY6	100.0	139	0	0	388	526	422	560	3.4e-70	276.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049170	MS.gene90899	-0.815872	7.40E-52	-1.69E-46
MS.gene04932	MS.gene90899	0.822346	2.49E-53	-1.69E-46
MS.gene050133	MS.gene90899	0.841666	4.14E-58	-1.69E-46
MS.gene050426	MS.gene90899	0.837693	4.47E-57	-1.69E-46
MS.gene050710	MS.gene90899	0.84845	6.08E-60	-1.69E-46
MS.gene050809	MS.gene90899	0.865058	7.78E-65	-1.69E-46
MS.gene050971	MS.gene90899	-0.801176	1.02E-48	-1.69E-46
MS.gene051552	MS.gene90899	0.853431	2.40E-61	-1.69E-46
MS.gene051838	MS.gene90899	-0.807479	4.95E-50	-1.69E-46
MS.gene051907	MS.gene90899	0.805777	1.13E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90899.t1	MTR_1g116947	100.000	217	0	0	389	605	423	639	4.33e-92	322
MS.gene90899.t1	MTR_1g033100	69.048	210	33	1	420	597	5	214	6.63e-52	192
MS.gene90899.t1	MTR_1918s0010	74.479	192	21	2	1	164	17	208	4.64e-22	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 642 sgRNAs with CRISPR-Local

Find 654 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTTAACTATGTCAAATA+TGG	0.264074	1.2:-86638178	MS.gene90899:CDS
AAGAAGGCGATGGTGGTGGT+GGG	0.475448	1.2:+86636094	None:intergenic
AAGCATAAATGTAAACTGGT+GGG	0.589163	1.2:+86635731	None:intergenic
AATATGGAGGAGAATATTGA+TGG	0.456617	1.2:+86637855	None:intergenic
AATGATAGTAGTATGGAGGA+GGG	0.608163	1.2:+86636118	None:intergenic
AATGGGTGGTGGTATGGAGG+GGG	0.464357	1.2:+86639107	None:intergenic
ACAATCAATGGGTGGTGGTA+TGG	0.465166	1.2:+86639101	None:intergenic
ACAGCTACAAGTGCTATAAT+TGG	0.323845	1.2:-86639058	MS.gene90899:CDS
ACATAAGGAGGTGGAGGGGA+TGG	0.419909	1.2:+86639881	None:intergenic
ACATAAGTTGGTGATGGTGG+AGG	0.616564	1.2:+86636762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCATAAATGTAAACTGGT+GGG	+	chr1.2:86639913-86639932	None:intergenic	30.0%
AATATGGAGGAGAATATTGA+TGG	+	chr1.2:86637789-86637808	None:intergenic	30.0%
ACTTGTAATAATATGGAGGA+GGG	+	chr1.2:86636248-86636267	None:intergenic	30.0%
AGATTTGTAATAGTATGGAG+GGG	+	chr1.2:86639144-86639163	None:intergenic	30.0%
ATGTTGTGTAGGAATTAAGT+TGG	+	chr1.2:86637108-86637127	None:intergenic	30.0%
ATTTATAGTAGTAAGGAGGT+GGG	+	chr1.2:86635870-86635889	None:intergenic	30.0%
GAGATTTGTAATAGTATGGA+GGG	+	chr1.2:86639145-86639164	None:intergenic	30.0%
GATTTATAATAGTATGGAGG+GGG	+	chr1.2:86639335-86639354	None:intergenic	30.0%
GCATGATGCAATAAAGAAAA+TGG	-	chr1.2:86637151-86637170	MS.gene90899:CDS	30.0%
GGAGATTTATAATAGTATGG+AGG	+	chr1.2:86639338-86639357	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	86635391	86640272	86635391	ID=MS.gene90899
chr1.2	mRNA	86635391	86640272	86635391	ID=MS.gene90899.t1;Parent=MS.gene90899
chr1.2	exon	86639018	86640272	86639018	ID=MS.gene90899.t1.exon1;Parent=MS.gene90899.t1
chr1.2	CDS	86639018	86640272	86639018	ID=cds.MS.gene90899.t1;Parent=MS.gene90899.t1
chr1.2	exon	86635709	86638295	86635709	ID=MS.gene90899.t1.exon2;Parent=MS.gene90899.t1
chr1.2	CDS	86635709	86638295	86635709	ID=cds.MS.gene90899.t1;Parent=MS.gene90899.t1
chr1.2	exon	86635391	86635454	86635391	ID=MS.gene90899.t1.exon3;Parent=MS.gene90899.t1
chr1.2	CDS	86635391	86635454	86635391	ID=cds.MS.gene90899.t1;Parent=MS.gene90899.t1

Gene Sequence

>MS.gene90899

ATGGCCATGGCATTGGCCATTGTTCTGATTTCTACTACAGTGGTTTCTGTTGCTGCTGATGGTTACCCATACAATTCTCCTCCACCACCAACTTATGAGTACAAGTCACCCCCTCCACCGTCTCCTTCACCGCCACCTCCTTACATTTACAAATCACCCCCTCCACCACCTTATGAACATAAAGCTCCACCTTACGAGTACAAGTCACCACCGCCACCGTCACCTTCACCGCCACCGCCTTACGAGTACAAGTCTCCACCTCCACCTTCCCCATCCCCCCCACCTCCTTATGTATACAAGTCACCACCTCCCCCACCGTATGAGCACAAAGCTCCACCATATGAGTACAAGTCTCCACCTCCACCTTCCCCATCCCCTCCACCTCCTTATGTATACAAGTCACCACCTCCCCCACCGTATGAGCACAAAGCTCCACCATATGAGTACAAGTCACCCCCACCACCATCTCCCTCACCCCCACCTCCTTACTACTATAAATCTCCACCACCACCCTCTCCCTCACCTCCACCACCTTACTACTACAAGTCACCTCCACCACCCTCTCCCTCACCTCCACCTCCTTACTACTACAAGTCACCTCCACCACCTTCACCTTCACCTCCTCCACCTTACTACTATAAATCTCCTCCTCCACCCTCTCCCTCCCCTCCACCTTACTATTACAAGTCTCCCCCACCACCATATGAGCACAAAGCTCCGCCATACTATTACAAGTCTCCCCCTCCACCTTCTCCCTCACCTCCACCACCTTACTACTACAAGTCTCCTCCACCACCCTCTCCCTCACCTCCACCTCCTTACTACTACAAGTCTCCCCCACCACCCTCACCCTCCCCTCCTCCATATTATTACAAGTCCCCACCACCTCCTTCACCGTCCCCTCCACCACCATATTATTATAAATCTCCTCCACCACCTTCACCATCTCCTCCACCACCCTATTATTACAAGTCTCCTCCTCCTCCATCTCCGGTACCTCATCCACCTTACTACTACAATTCACCACCACCTCCTGTAAAATCTCCACCTCCACCAACACCGTACTACTATCAGTCTCCACCACCACCCAAGTACACTCCACCTCCATACTACTATAATTCTCCTCCTCCGCCAGTTGTATATCCCCCTCCATACCACCACCCATTGATTGTGAAGGTAGTGGGTAAAGTCTACAGCTACAAGTGCTATAATTGGGAGTATCCCGAAAAGTCTCATGACAAGAAACATCTCAAAGGTATATTACATTCATTTCTTAATTGATACATTTTAATCTCTCTTCTCTACATCAATATTCAATATTGTTTTATAGTCAAATTTTTGGCGGTTATTTTTAAATTGGGGAATTAGTCACTTTAGTCCTGAATGGGAACGATTCGTCAATTTAGTCCCCTGTACTACTAACGAAGTCCACATTCAGGGACTAAATTGACTAACGGAGTCTACATTCAGGGACTATTTTGCAATTTATCTGCATTCAGGGACTAAATTGACGAATCGTTCCCCATTCAGGGACTAAAGTGACTAATTCCCCTTTTAAATTTTTGGATGAGGTTCATATGTTCGATATATCAAGTTTAGCTATTCATTTTTCAAACAACATATACAAAGCATTTTATCTTCTGCATATACCCGTCACCTTTGAGAACCTATATCTATTAATAAAAATCAACTTATTTTTGACTCATTAATAAAACCAACTTAATTCCTACACAACATACAATATTTATTTAGAACCAAATGCATGATGCAATAAAGAAAATGGACATGGCAGATAATTTGACTCGAACTTCAGAACTGGTTAATGCCTAGTAAAAATTAACATGCTTAGGACACATATAGCTAAACTTGCCCTTCTTTTAGTAAGATTTTGTAACGTTTTTTAATTCTGTCATTATTTATATTTCACTTTGTTGTATCACATGTGTGACTTATGAATTTTAAATGATTATGGGATAGGTGCTGTTGTTGAGGTCAAATGCAAAGCTGGAAGGAACATCATCAAGGCGTACGGTAAAACTAAGAGTAATGGAAAGTATGCCATCACAATTCCTAACTTTAACTATGTCAAATATGGTTCCGTGGTGTGCAAAGCCAAGCTATATGCTCCACCTAAAGACTCTCCCTTCAACATACCTACTAAGCTCAATGAGGGAACTGACTTGAAGGTAAAATCCAAAGACAAGTATGAAGTTGTGCTCAAGGCTAAGCCATTCGCGTATGCTTCTAAGAAGCATTATGAAGAATGTGAAAAACCTAAGCCTTCACCAACTCCTTACTACTACAAGTCACCTCCTCCTCCTTCACCAGTTTATATATACAAGTCACCACCTCCACCATCACCTACTTATAAGTACACGTCACCACCTCCACCTGTCCATCAATATTCTCCTCCATATTATTACAAGTCACCACCCCCACCATCACCTGTTTACAAACCCCCATACTACTACAAGTCACCTCCTCCTCCAACACCAATTTACAAGTACAATTCACCACCTCCACCATCACCAACTTACGTGTACAAGTCTCCACCCCCACCATCACCTGTATATAAACCCCCATACTATTACAAGTCACCTCCTCCACCATCACCTGTATACCAGCCCCCATACTACTACAAGTCACCTCCTCCTCCATCACCAGTTTACTACTACAAGTCACCACCCCCACCATCACCTGTATACAAACCCCCGTACTACTACAAGTCACCTCCTCCTCCGACACCAATTTACAAGTACAATTCACCACCTCCACCATCACCAACTTACGTGTACAAGTCTCCACCCCCACCATCACCTGTGTATAAACCCCCATACTATTACAAGTCACCTCCTCCACCATCACCTGCATACAAGCCCCCATACTACTACAAGTCACCACCTCCTCCAACACCAGTTTACTACTACAAGTCACCACCTCCACCATCACCTGTATACAAACCCCCATACTACTACAAGTCACCTCCTCCTCCAACACCGATTTACAAGTACAATTCACCACCTCCACCTTCACCAACTTACGTGTACAAGTCTCCACCCCCACCATCACCTGTGTATAAACCACCATACTATTACAAGTCACCTCCTCCACCATCACCTGCATACAAGCCCCCATACTACTACAAGTCACCACCCCCACCATCACCTGTATACAAACCCCCGTACTACTACAAGTCACCTCCTCCTCCGACACCAATTTACAAGTACAATTCACCACCTCCACCATCACCAACTTACGTGTACAAGTCTCCACCCCCACCATCACCTGTGTATAAACCCCCATACTATTACAAGTCACCTCCTCCACCATCACCTGTATACAAGCCCCCATACTACTACAAGTCACCTCCTCCTCCAACACCAGTTTACTACTATAAGTCTCCACCTCCACCATCACCTGTATACAAACCCCCGTACTACTACAAGTCACCTCCTCCTCCAACACCAGTTTACAAATACAATTCACCACCTCCACCATCACCAACTTATGTGTACAAGTCACCACCCCCACCATCACCTGTATACAAACCACCGTATTACTACAAGTCACCTCCTCCTCCAACACCAGTTTACAAGTACAATTCACCACCTCCGCCATCACCTACTTACATGTACAAGTCTCCTCCTCCTCCAACACCAGTTTACAAGTACAAGTCACCACCTCCACCTGTCCATTATTATTCTCCACCATACTACTATAAGTCACCACCTCCACCATCCCCATCACCTCCCCCTCCATACTATTACAAATCTCCCCCACCGCCATTACCATCTCCACCTCCACCATACTATTATCATTCGCCACCCCCACCTAAAGAATTACCAAATCCTCCATACTACTATAAGTCACCACCACCACCATCACCATCCCCTCCTCCACCATACTATTATAAGTCACCACCTCCACCATCACCATCCCCTCCCCCTCCATACTATTATAAATCTCCTCCACCACCCTCACCATCCCCACCTCCACCATACTATTACCAATCCCCTCCACCACCATCACCATCTCCACCACCTCCATACTACTACAAAAGTCCCCCTCCACCCTCTCCCTCTCCTCCATCTCCATACTATTACAAGAGTCCCCCTCCACCCTCTCCCTCCCCCCCTCCTCCATACTACTATCATTCCCCACCACCACCATCGCCTTCTTCACCACCTCCCTACTACTACAAATCCCCTCCACCACCATCCCCGTCACCTCCACCTCCTTACTATTACAAGTCACCTCCACCACCATCTCCATCTCCACCACCTCCTTATCACTATCAAAGTCCTCCTCCACCATCTCCCACTCCTCATACTCCCTACTACTACAAATCCCATCCACCACCAACGACATCTCCTCCACCTCCTTACCATTATGTGAGTCCTCCCCCACCTACATCATCTCCTCCACCACCATACCACTACACATCACCACCTCCTCCCTCCCCAGCTCCCGCTCCCACATACATATACAAATCACCTCCCCCACCAGTGAAATCACCTCCCCCACCAGTTTACATTTATGCTTCCCCACCACCACCTATCTACAAGTAAGCTCAGAATGCAACAACAGTGTTCCTTATAAATCACGTAAGTTTATAATCTTACATCCATAAATATACATATATTACAACTGCATGCATAAATCTTAATAATGCAAATTATTTCTTTTCAGGTTTTAGTTTTCATCAAGGAATAAATGCAACCTCCATTGGGAACAAAGTGCAACATTTATCTTCCTATCGAAGTTCTTTGAATAAAAGTCTGAAAGCGTCATCTCTAAGCAACAATATTTGTGATTCAGACGTGGTCGAGTCTATTTCTTTGGTGGCCATCTTGCACGTCCTGGTCTTGTTGTACTCAAGTGA

Protein sequence

>MS.gene90899.t1

MAMALAIVLISTTVVSVAADGYPYNSPPPPTYEYKSPPPPSPSPPPPYIYKSPPPPPYEHKAPPYEYKSPPPPSPSPPPPYEYKSPPPPSPSPPPPYVYKSPPPPPYEHKAPPYEYKSPPPPSPSPPPPYVYKSPPPPPYEHKAPPYEYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPYYYKSPPPPYEHKAPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPHPPYYYNSPPPPVKSPPPPTPYYYQSPPPPKYTPPPYYYNSPPPPVVYPPPYHHPLIVKVVGKVYSYKCYNWEYPEKSHDKKHLKGAVVEVKCKAGRNIIKAYGKTKSNGKYAITIPNFNYVKYGSVVCKAKLYAPPKDSPFNIPTKLNEGTDLKVKSKDKYEVVLKAKPFAYASKKHYEECEKPKPSPTPYYYKSPPPPSPVYIYKSPPPPSPTYKYTSPPPPVHQYSPPYYYKSPPPPSPVYKPPYYYKSPPPPTPIYKYNSPPPPSPTYVYKSPPPPSPVYKPPYYYKSPPPPSPVYQPPYYYKSPPPPSPVYYYKSPPPPSPVYKPPYYYKSPPPPTPIYKYNSPPPPSPTYVYKSPPPPSPVYKPPYYYKSPPPPSPAYKPPYYYKSPPPPTPVYYYKSPPPPSPVYKPPYYYKSPPPPTPIYKYNSPPPPSPTYVYKSPPPPSPVYKPPYYYKSPPPPSPAYKPPYYYKSPPPPSPVYKPPYYYKSPPPPTPIYKYNSPPPPSPTYVYKSPPPPSPVYKPPYYYKSPPPPSPVYKPPYYYKSPPPPTPVYYYKSPPPPSPVYKPPYYYKSPPPPTPVYKYNSPPPPSPTYVYKSPPPPSPVYKPPYYYKSPPPPTPVYKYNSPPPPSPTYMYKSPPPPTPVYKYKSPPPPVHYYSPPYYYKSPPPPSPSPPPPYYYKSPPPPLPSPPPPYYYHSPPPPKELPNPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSPSPPPPYYYKSPPPPSPSPPSPYYYKSPPPPSPSPPPPYYYHSPPPPSPSSPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYHYQSPPPPSPTPHTPYYYKSHPPPTTSPPPPYHYVSPPPPTSSPPPPYHYTSPPPPSPAPAPTYIYKSPPPPVKSPPPPVYIYASPPPPIYKRGRVYFFGGHLARPGLVVLK