AlfalfaGEDB | MS.gene91098

M. sativa cultivar XinJiangDaYe / MS.gene91098

KEGG: -
GO: -
PFAM: PF00226.34 PF13370.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91098.t1	XP_003589717.2	90.1	477	14	1	1	444	1	477	6.40E-237	829.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91098.t1	Q9FMX6	51.1	454	194	8	7	442	16	459	2.8e-116	420.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91098.t1	A0A396JQ54	90.1	477	14	1	1	444	1	477	4.6e-237	829.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene91098	0.804716	1.89E-49	-1.69E-46
MS.gene050133	MS.gene91098	-0.842513	2.47E-58	-1.69E-46
MS.gene050315	MS.gene91098	0.824098	9.70E-54	-1.69E-46
MS.gene050404	MS.gene91098	0.802179	6.34E-49	-1.69E-46
MS.gene050406	MS.gene91098	0.827918	1.20E-54	-1.69E-46
MS.gene050426	MS.gene91098	-0.85147	8.69E-61	-1.69E-46
MS.gene051171	MS.gene91098	0.863204	2.94E-64	-1.69E-46
MS.gene051208	MS.gene91098	0.864036	1.62E-64	-1.69E-46
MS.gene051240	MS.gene91098	0.803649	3.15E-49	-1.69E-46
MS.gene051242	MS.gene91098	0.849109	3.99E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91098.t1	MTR_1g038430	97.163	423	12	0	22	444	37	459	0.0	857
MS.gene91098.t1	MTR_2g083920	33.659	205	125	4	35	237	70	265	7.26e-30	119
MS.gene91098.t1	MTR_2g083920	33.014	209	129	4	35	241	70	269	1.92e-29	116
MS.gene91098.t1	MTR_4g080350	35.450	189	108	5	35	220	72	249	6.21e-28	114
MS.gene91098.t1	MTR_2g083920	33.333	180	109	4	60	237	2	172	2.00e-25	104
MS.gene91098.t1	MTR_1g038470	51.807	83	32	2	106	185	2	79	6.97e-17	79.3
MS.gene91098.t1	MTR_1g038510	81.081	37	7	0	146	182	102	138	2.70e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91098.t1	AT5G23240	50.766	457	196	8	5	442	13	459	4.75e-155	447
MS.gene91098.t1	AT2G42750	31.390	223	142	4	17	237	58	271	1.41e-29	118

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Find 90 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTACCAAGTATTCTC+AGG	0.534346	1.3:-21689370	MS.gene91098:intron
AAATTAATTAACCTTATCAT+AGG	0.400387	1.3:+21690901	None:intergenic
AAGGGTTGCTGTAGAATTTG+TGG	0.483426	1.3:-21688145	MS.gene91098:CDS
AATCAGTTTATGGAAGAGCA+AGG	0.576566	1.3:-21689844	MS.gene91098:CDS
AATTAGACGGGGATTGCCAG+TGG	0.621632	1.3:-21688325	MS.gene91098:CDS
ACAGAATTCAAAGGCTTCAC+TGG	0.429274	1.3:-21689989	MS.gene91098:CDS
ACATATTTGTAGATGTGGAG+AGG	0.591397	1.3:-21689422	MS.gene91098:CDS
ACATTCTTGATTCTCTTTGG+AGG	0.428803	1.3:+21688697	None:intergenic
ACTGGCAATCCCCGTCTAAT+TGG	0.257361	1.3:+21688327	None:intergenic
ACTTACGAAATGCAGTTGAC+AGG	0.558378	1.3:+21689764	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACATTCGAACTTTGA+TGG	+	chr1.3:21690200-21690219	None:intergenic	30.0%
AAACATTTGTGAGACTGTAT+GGG	+	chr1.3:21690563-21690582	None:intergenic	30.0%
AGTAACAGTAGACATGTTTA+TGG	+	chr1.3:21688168-21688187	None:intergenic	30.0%
ATACAAGTCAAAATCCAACA+TGG	+	chr1.3:21688309-21688328	None:intergenic	30.0%
CAATAAGATCAATTTCCAAC+TGG	-	chr1.3:21690734-21690753	MS.gene91098:intron	30.0%
CAATTTCCAACTGGTTATAT+TGG	-	chr1.3:21690743-21690762	MS.gene91098:intron	30.0%
CTCAAACATATTTGTAGATG+TGG	-	chr1.3:21689969-21689988	MS.gene91098:CDS	30.0%
CTCTTGGTTGCAATATATAT+TGG	-	chr1.3:21691203-21691222	MS.gene91098:intron	30.0%
GCTTATAGTATGACAAAATG+TGG	-	chr1.3:21689364-21689383	MS.gene91098:intron	30.0%
TAAACATTTGTGAGACTGTA+TGG	+	chr1.3:21690564-21690583	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	21688119	21691299	21688119	ID=MS.gene91098
chr1.3	mRNA	21688119	21691299	21688119	ID=MS.gene91098.t1;Parent=MS.gene91098
chr1.3	exon	21691237	21691299	21691237	ID=MS.gene91098.t1.exon1;Parent=MS.gene91098.t1
chr1.3	CDS	21691237	21691299	21691237	ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1
chr1.3	exon	21690913	21691137	21690913	ID=MS.gene91098.t1.exon2;Parent=MS.gene91098.t1
chr1.3	CDS	21690913	21691137	21690913	ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1
chr1.3	exon	21689770	21690026	21689770	ID=MS.gene91098.t1.exon3;Parent=MS.gene91098.t1
chr1.3	CDS	21689770	21690026	21689770	ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1
chr1.3	exon	21689371	21689551	21689371	ID=MS.gene91098.t1.exon4;Parent=MS.gene91098.t1
chr1.3	CDS	21689371	21689551	21689371	ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1
chr1.3	exon	21688119	21688727	21688119	ID=MS.gene91098.t1.exon5;Parent=MS.gene91098.t1
chr1.3	CDS	21688119	21688727	21688119	ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1

Gene Sequence

>MS.gene91098

ATGATGTCTTATCCTCTTGCTGCCACACCTTGTTCTCAAACTCAAACCATAAACATGTCTACTGTTACTTCTACATCTCTTCCTTTCTTCACTCCAAAACCCTCAAATTTCCAAAACAAGTCTTGTTTTTCTAAATCAAATTTCTCTACTCTTACATGTAAGGCATCATCATCAAGTTTTTCAGCATCCATGTTGGATTTTGACTTGTATGATCTTCTAGGAATTGATAGTTCATGTGATCAGTCACAGATTAAGACGGCGTATCGATCCCTTCAGAAACGATGTCATCCTGATATTGCTGGTCCTTCTGGTCATGATATGGCTATCATTCTTAATGATGCTTATGCCATTCTTTCGGATCCATTTGCTCGTTTTGCCTATGATAAGGTTAATTAATTTCTCTTATTTCCTTTCTTTTTAGTTTATTATAATTGTGGTGAATAATGAAGTTCAATCTATTACTCATGTCATGTATGGTGTGATGTACTTTTGTTGTCAATTTATAGTTCTAAATTAAGGTATGCAACTTCAATTGCGGCTTAATATAAATGTTTTAAAATTCTATGTCGCTGGTGTCAAGGTTGCTGCGTATATATCGTAACATCGTACAATTTTACGATCTCAGTAACCCCTTGTGCGTCCAGAATTGATTTTGCTAAAATCGTGAGATTGTACGATCTCATAGGATTTTTGTATGGCGCAATTACGACTACAATAGCCGTGTTTACTTGTATTTTACTGCAATCTTATGATTTACAGTGTGAATACAACAGCGATCGCAATTTAGAACCAAATTTGTGCTTTTGTTAAGTTTTTTGTATCGAATTCTAGTTTCTATTTTAAGATTATAAGGTAGTACTAGTTTTGTACTCATGAGATTACTATGTATGAGAGTAGTGTTAAGAGGAAAAAGTAACAGATCAATATTTATACAGATTAAAGCTGTAGTTTTAGGACTATCTATGCACTCATAATGAAAAACTTTTTAACATAATCATCCAATCAGATATCATTATACAAAATGTTTATAACAAAATAACATTATGGTGAGAACTGATTAGATGACTATGTAGAAGAGTCTATTCAGATGGATTGATTTAACAAGGAAAGTTCTCGCATGACTCAAATCCAAGACATCGGTTAAGAGATGAATAAAACTCTATTCTGCTTGTAACTAAGAATTAAGATTGGAAATATTATAAGAGTTTGCCTCCAATTGAATTCTTATTTGTTTTTGGTTTGGTTGCTTATAGTATGACAAAATGTGGTGCAGGAGCATGCAAAGATCACAGAATTCAAAGGCTTCACTGGAAGACCATTGTATTCAGTTTGGTGTGGTTCACAAAGTGAACAGAGAGCTATATTTGTTGATGAAATAAAATGTGTTGGATGCCTAAAATGTGCTTTGTTAGCTGAAAAAACTTTTGCTATAGAATCAGTTTATGGAAGAGCAAGGGTTGTTTCTCAGTGGGCTGATTCTGAACCCACAATTGATGAGGCAATTCAAGCTTGTCCTGTCAACTGCATTTCGTAAGTGCGCGTGCGTCTGTGTATAAACTATTCTGTACTTGGCTTCATATCTTGTGAGTTACTTAAACTATTCTGAGAGTTGCAATCAAATACGGCCTCAATTGCTGTCGCATAGACATGAAATCTTTTTATATTGCAACCTTGTATATTCATTGAATAATTGATTGTTTTTTAACATCTAATGTGAAACGTCATTTTTCTGATTTTGAACAAACTAGAGTTGTTGAGAGATCCAACCTTGCTGCTTTGGAGTTCTTGATGTCGAAGCAGCCACGTGGCAATGTAAGAGTAGGTGCAAGTCATACAGCAGGTGCTCGTGTCTCAAACATATTTGTAGATGTGGAGAGGTTTCAGACTAGATTTCAAGAGACAATGCAAAAAGCTACCAAGTATTCTCAGGTGAATGAATTTTTGGATTCACTTTTTGGACAGTCAAAAGTGATTATGAAAACTTAACATTGATTTTAGTATGTTTGAAGGCAAGAGATTAAAATTGGTTTTCCCGTAGAGTTGATTCTAACTTGAAACTATAAGATTTTTAGCTTCTGCCATCAAAGTTCGAATGTGTTTTTTATATTCAAATGTATTGTTCAACTCACTTTCACGGTAATGTATCTCAATTTCAGCATAAACCATTTCACTATAAACTCACTTTTAACTCAATCACTTTCACATTGGACCACTCTTTTATGCTTAGCCTTTGTTCGATAAACAACTTAATTAAATGCTTATAGTATGAAGACTTATCATATAAGGGCTTATATATAAGTTATTTCTAAAAGAAAAGATAAAAAGTAATTCAGTTTTCATATAAGCTATAAACTGTGGTCATAATTTATCCTAAAGAGCTTATGGAAATAATCTGAAAGCAATTTATATTCATGCATAAACTGTTTTCATAAGCTCAATCTCCCATACAGTCTCACAAATGTTTATGCTAGTAGATAAGCTCACATAATCTAATCCAAACCAGCCCTTAATCTTCAAAGCACGAATTCCTCATTATTTCACTGTGAATTAACAAAAGAAGATCTCTTTTCAGGAAACAGACCTCCAAAGAGAATCAAGAATGTCAGCAATTCAAGCAATAAGATCAATTTCCAACTGGTTATATTGGCAACCAAATTGTGCAACTGGCACCAAAAGCATGACAAAAGTTGCGCAAAAATTACTACCTGATCCAAATCTTAGTAAGCTAAGAGATGCAGCTGCAAAGAGAAAATTAAAAGATACACAAAAAACCAAACATAAAACCCCCATAAATTCCATTCATCCTGAGGAATATTGGACTCCATCAACTGTTGTTCTTCCTTCTTCAACTAGTACTACTACTACTGCACCAATTGAGAAGGCTACATTTGCTAAAGGAAAGAAACAAAGAATAAGAAGTGATATTGAAACATATGAGAATGAAAATAGTCCAATTAGACGGGGATTGCCAGTGGTTACTTCATTGTTTGGTATGGCTGCAGTTAGGTTACATGAAGTAGGATCATCAACAGTTGAGTTGAAAGAGCATTGGGGAGGTTCTCTAGCTTTGGAAATCGTTAACAGCTCTTGGTTGCAATATATATTGGTAGCAGCTACATGGTATGTGATTGGAAGGGTTGCTGTAGAATTTGTGGCCAACATTGGAAATAGAAATCGATAG

Protein sequence

>MS.gene91098.t1

MMSYPLAATPCSQTQTINMSTASSSSFSASMLDFDLYDLLGIDSSCDQSQIKTAYRSLQKRCHPDIAGPSGHDMAIILNDAYAILSDPFARFAYDKEHAKITEFKGFTGRPLYSVWCGSQSEQRAIFVDEIKCVGCLKCALLAEKTFAIESVYGRARVVSQWADSEPTIDEAIQACPVNCISVVERSNLAALEFLMSKQPRGNVRVGASHTAGARVSNIFVDVERFQTRFQETMQKATKYSQETDLQRESRMSAIQAIRSISNWLYWQPNCATGTKSMTKVAQKLLPDPNLSKLRDAAAKRKLKDTQKTKHKTPINSIHPEEYWTPSTVVLPSSTSTTTTAPIEKATFAKGKKQRIRSDIETYENENSPIRRGLPVVTSLFGMAAVRLHEVGSSTVELKEHWGGSLALEIVNSSWLQYILVAATWYVIGRVAVEFVANIGNRNR