Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91098.t1 | XP_003589717.2 | 90.1 | 477 | 14 | 1 | 1 | 444 | 1 | 477 | 6.40E-237 | 829.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91098.t1 | Q9FMX6 | 51.1 | 454 | 194 | 8 | 7 | 442 | 16 | 459 | 2.8e-116 | 420.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91098.t1 | A0A396JQ54 | 90.1 | 477 | 14 | 1 | 1 | 444 | 1 | 477 | 4.6e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene91098 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene91098 | -0.842513 | 2.47E-58 | -1.69E-46 |
| MS.gene050315 | MS.gene91098 | 0.824098 | 9.70E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene91098 | 0.802179 | 6.34E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene91098 | 0.827918 | 1.20E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene91098 | -0.85147 | 8.69E-61 | -1.69E-46 |
| MS.gene051171 | MS.gene91098 | 0.863204 | 2.94E-64 | -1.69E-46 |
| MS.gene051208 | MS.gene91098 | 0.864036 | 1.62E-64 | -1.69E-46 |
| MS.gene051240 | MS.gene91098 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene91098 | 0.849109 | 3.99E-60 | -1.69E-46 |
| MS.gene051244 | MS.gene91098 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene91098 | 0.813706 | 2.23E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene91098 | 0.828046 | 1.12E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene91098 | -0.82208 | 2.87E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene91098 | 0.861995 | 6.93E-64 | -1.69E-46 |
| MS.gene052135 | MS.gene91098 | 0.850457 | 1.68E-60 | -1.69E-46 |
| MS.gene052469 | MS.gene91098 | 0.80504 | 1.62E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene91098 | 0.862073 | 6.56E-64 | -1.69E-46 |
| MS.gene052590 | MS.gene91098 | 0.842543 | 2.43E-58 | -1.69E-46 |
| MS.gene052758 | MS.gene91098 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene91098 | 0.932907 | 4.20E-95 | -1.69E-46 |
| MS.gene053971 | MS.gene91098 | 0.865713 | 4.84E-65 | -1.69E-46 |
| MS.gene054102 | MS.gene91098 | 0.876064 | 1.88E-68 | -1.69E-46 |
| MS.gene054110 | MS.gene91098 | 0.855893 | 4.65E-62 | -1.69E-46 |
| MS.gene05413 | MS.gene91098 | 0.813734 | 2.20E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene91098 | 0.840913 | 6.53E-58 | -1.69E-46 |
| MS.gene055217 | MS.gene91098 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene91098 | 0.889583 | 2.13E-73 | -1.69E-46 |
| MS.gene055539 | MS.gene91098 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene91098 | 0.858368 | 8.64E-63 | -1.69E-46 |
| MS.gene05556 | MS.gene91098 | 0.81561 | 8.46E-52 | -1.69E-46 |
| MS.gene056305 | MS.gene91098 | 0.862791 | 3.95E-64 | -1.69E-46 |
| MS.gene056351 | MS.gene91098 | 0.84303 | 1.80E-58 | -1.69E-46 |
| MS.gene056442 | MS.gene91098 | 0.834401 | 3.06E-56 | -1.69E-46 |
| MS.gene056451 | MS.gene91098 | 0.814573 | 1.44E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene91098 | 0.95283 | 1.04E-110 | -1.69E-46 |
| MS.gene056664 | MS.gene91098 | 0.859445 | 4.12E-63 | -1.69E-46 |
| MS.gene056899 | MS.gene91098 | -0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene91098 | 0.823308 | 1.49E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene91098 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene91098 | 0.807917 | 4.00E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene91098 | 0.840603 | 7.87E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene91098 | 0.837741 | 4.35E-57 | -1.69E-46 |
| MS.gene058743 | MS.gene91098 | 0.821012 | 5.06E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene91098 | 0.937484 | 3.21E-98 | -1.69E-46 |
| MS.gene059011 | MS.gene91098 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene059512 | MS.gene91098 | 0.879753 | 9.63E-70 | -1.69E-46 |
| MS.gene059683 | MS.gene91098 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene91098 | -0.824514 | 7.75E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene91098 | 0.828326 | 9.57E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91098.t1 | MTR_1g038430 | 97.163 | 423 | 12 | 0 | 22 | 444 | 37 | 459 | 0.0 | 857 |
| MS.gene91098.t1 | MTR_2g083920 | 33.659 | 205 | 125 | 4 | 35 | 237 | 70 | 265 | 7.26e-30 | 119 |
| MS.gene91098.t1 | MTR_2g083920 | 33.014 | 209 | 129 | 4 | 35 | 241 | 70 | 269 | 1.92e-29 | 116 |
| MS.gene91098.t1 | MTR_4g080350 | 35.450 | 189 | 108 | 5 | 35 | 220 | 72 | 249 | 6.21e-28 | 114 |
| MS.gene91098.t1 | MTR_2g083920 | 33.333 | 180 | 109 | 4 | 60 | 237 | 2 | 172 | 2.00e-25 | 104 |
| MS.gene91098.t1 | MTR_1g038470 | 51.807 | 83 | 32 | 2 | 106 | 185 | 2 | 79 | 6.97e-17 | 79.3 |
| MS.gene91098.t1 | MTR_1g038510 | 81.081 | 37 | 7 | 0 | 146 | 182 | 102 | 138 | 2.70e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91098.t1 | AT5G23240 | 50.766 | 457 | 196 | 8 | 5 | 442 | 13 | 459 | 4.75e-155 | 447 |
| MS.gene91098.t1 | AT2G42750 | 31.390 | 223 | 142 | 4 | 17 | 237 | 58 | 271 | 1.41e-29 | 118 |
Find 90 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGGATGAATGGAATTTA+TGG | 0.158588 | 1.3:+21688491 | None:intergenic |
| AGTAACAGTAGACATGTTTA+TGG | 0.187537 | 1.3:+21691231 | None:intergenic |
| CTGACATTCTTGATTCTCTT+TGG | 0.194662 | 1.3:+21688694 | None:intergenic |
| TTTGCTATAGAATCAGTTTA+TGG | 0.202414 | 1.3:-21689854 | MS.gene91098:CDS |
| TTTGACTTGTATGATCTTCT+AGG | 0.212676 | 1.3:-21691079 | MS.gene91098:CDS |
| CAATTTCCAACTGGTTATAT+TGG | 0.229177 | 1.3:-21688653 | MS.gene91098:CDS |
| CCTGATATTGCTGGTCCTTC+TGG | 0.231877 | 1.3:-21690989 | MS.gene91098:CDS |
| TCTCTTAGCTTACTAAGATT+TGG | 0.253936 | 1.3:+21688567 | None:intergenic |
| ACTGGCAATCCCCGTCTAAT+TGG | 0.257361 | 1.3:+21688327 | None:intergenic |
| CCATTCATCCTGAGGAATAT+TGG | 0.276497 | 1.3:-21688482 | MS.gene91098:CDS |
| GAGATCCAACCTTGCTGCTT+TGG | 0.303926 | 1.3:-21689520 | MS.gene91098:CDS |
| TTGGTGCCAGTTGCACAATT+TGG | 0.317679 | 1.3:+21688627 | None:intergenic |
| CCAGTGGTTACTTCATTGTT+TGG | 0.318448 | 1.3:-21688309 | MS.gene91098:CDS |
| CTCTTGGTTGCAATATATAT+TGG | 0.333927 | 1.3:-21688193 | MS.gene91098:CDS |
| TTGGGGAGGTTCTCTAGCTT+TGG | 0.348620 | 1.3:-21688229 | MS.gene91098:CDS |
| TGATGCTTATGCCATTCTTT+CGG | 0.378520 | 1.3:-21690942 | MS.gene91098:CDS |
| CCAGAAGGACCAGCAATATC+AGG | 0.385817 | 1.3:+21690989 | None:intergenic |
| TGGTCCTTCTGGTCATGATA+TGG | 0.387346 | 1.3:-21690978 | MS.gene91098:CDS |
| TTCATTCACCTGAGAATACT+TGG | 0.395135 | 1.3:+21689362 | None:intergenic |
| TCAGGATGAATGGAATTTAT+GGG | 0.397759 | 1.3:+21688492 | None:intergenic |
| GCAAATGTAGCCTTCTCAAT+TGG | 0.398006 | 1.3:+21688408 | None:intergenic |
| AAATTAATTAACCTTATCAT+AGG | 0.400387 | 1.3:+21690901 | None:intergenic |
| TGGAAATCGTTAACAGCTCT+TGG | 0.411043 | 1.3:-21688209 | MS.gene91098:CDS |
| AGTTGAGTTGAAAGAGCATT+GGG | 0.412413 | 1.3:-21688247 | MS.gene91098:CDS |
| CGATGTCATCCTGATATTGC+TGG | 0.415641 | 1.3:-21690998 | MS.gene91098:CDS |
| TGGCAACCAAATTGTGCAAC+TGG | 0.415840 | 1.3:-21688633 | MS.gene91098:CDS |
| GAAGACCATTGTATTCAGTT+TGG | 0.420412 | 1.3:-21689967 | MS.gene91098:CDS |
| ACATTCTTGATTCTCTTTGG+AGG | 0.428803 | 1.3:+21688697 | None:intergenic |
| ACAGAATTCAAAGGCTTCAC+TGG | 0.429274 | 1.3:-21689989 | MS.gene91098:CDS |
| GAAGGAAGAACAACAGTTGA+TGG | 0.432900 | 1.3:+21688456 | None:intergenic |
| TCGATTTCTATTTCCAATGT+TGG | 0.441877 | 1.3:+21688122 | None:intergenic |
| GGTTACTTCATTGTTTGGTA+TGG | 0.442830 | 1.3:-21688304 | MS.gene91098:CDS |
| CCAATATTCCTCAGGATGAA+TGG | 0.445444 | 1.3:+21688482 | None:intergenic |
| TCATAGGCAAAACGAGCAAA+TGG | 0.458278 | 1.3:+21690917 | None:intergenic |
| TGAAAATAGTCCAATTAGAC+GGG | 0.464684 | 1.3:-21688337 | MS.gene91098:CDS |
| CAATAAGATCAATTTCCAAC+TGG | 0.475149 | 1.3:-21688662 | MS.gene91098:CDS |
| GCAGCTACATGGTATGTGAT+TGG | 0.477504 | 1.3:-21688168 | MS.gene91098:CDS |
| TTGAATTGCCTCATCAATTG+TGG | 0.477513 | 1.3:+21689793 | None:intergenic |
| GAGAAGGCTACATTTGCTAA+AGG | 0.480645 | 1.3:-21688402 | MS.gene91098:CDS |
| AAGGGTTGCTGTAGAATTTG+TGG | 0.483426 | 1.3:-21688145 | MS.gene91098:CDS |
| TGAATTGCCTCATCAATTGT+GGG | 0.486266 | 1.3:+21689794 | None:intergenic |
| AGCTTACTAAGATTTGGATC+AGG | 0.486859 | 1.3:+21688573 | None:intergenic |
| AGCAAATGGATCCGAAAGAA+TGG | 0.495584 | 1.3:+21690931 | None:intergenic |
| TGTTTGGTATGGCTGCAGTT+AGG | 0.496837 | 1.3:-21688293 | MS.gene91098:CDS |
| GAACTCCAAAGCAGCAAGGT+TGG | 0.505248 | 1.3:+21689515 | None:intergenic |
| CTCAAACATATTTGTAGATG+TGG | 0.509300 | 1.3:-21689427 | MS.gene91098:CDS |
| CAGTTGAGTTGAAAGAGCAT+TGG | 0.510120 | 1.3:-21688248 | MS.gene91098:CDS |
| ATGAAAATAGTCCAATTAGA+CGG | 0.517165 | 1.3:-21688338 | MS.gene91098:CDS |
| GTAGTAGTACTAGTTGAAGA+AGG | 0.518499 | 1.3:+21688438 | None:intergenic |
| ATGGTTTGAGTTTGAGAACA+AGG | 0.519969 | 1.3:+21691250 | None:intergenic |
| GTTGATGAAATAAAATGTGT+TGG | 0.520242 | 1.3:-21689911 | MS.gene91098:CDS |
| AGCAAGGGTTGTTTCTCAGT+GGG | 0.533941 | 1.3:-21689828 | MS.gene91098:CDS |
| AAAAGCTACCAAGTATTCTC+AGG | 0.534346 | 1.3:-21689370 | MS.gene91098:intron |
| GATGGAGTCCAATATTCCTC+AGG | 0.534720 | 1.3:+21688474 | None:intergenic |
| CTACATGGTATGTGATTGGA+AGG | 0.538431 | 1.3:-21688164 | MS.gene91098:CDS |
| GTAGGTGCAAGTCATACAGC+AGG | 0.546276 | 1.3:-21689459 | MS.gene91098:CDS |
| CAGGATGACATCGTTTCTGA+AGG | 0.548079 | 1.3:+21691008 | None:intergenic |
| GTAGAATTTGTGGCCAACAT+TGG | 0.550242 | 1.3:-21688135 | MS.gene91098:CDS |
| CAGGATGAATGGAATTTATG+GGG | 0.557366 | 1.3:+21688493 | None:intergenic |
| ACTTACGAAATGCAGTTGAC+AGG | 0.558378 | 1.3:+21689764 | None:intergenic |
| ATCAGTTTATGGAAGAGCAA+GGG | 0.573227 | 1.3:-21689843 | MS.gene91098:CDS |
| AATCAGTTTATGGAAGAGCA+AGG | 0.576566 | 1.3:-21689844 | MS.gene91098:CDS |
| ATATATTGGTAGCAGCTACA+TGG | 0.581246 | 1.3:-21688179 | MS.gene91098:CDS |
| CCATTGTATTCAGTTTGGTG+TGG | 0.590749 | 1.3:-21689962 | MS.gene91098:CDS |
| ACATATTTGTAGATGTGGAG+AGG | 0.591397 | 1.3:-21689422 | MS.gene91098:CDS |
| CCACGTGGCAATGTAAGAGT+AGG | 0.594070 | 1.3:-21689477 | MS.gene91098:CDS |
| GCAGTTAGGTTACATGAAGT+AGG | 0.596129 | 1.3:-21688279 | MS.gene91098:CDS |
| GCAAAGATCACAGAATTCAA+AGG | 0.599426 | 1.3:-21689998 | MS.gene91098:CDS |
| TACTACTGCACCAATTGAGA+AGG | 0.603819 | 1.3:-21688418 | MS.gene91098:CDS |
| CATAAATTCCATTCATCCTG+AGG | 0.607786 | 1.3:-21688490 | MS.gene91098:CDS |
| GAACAAGGTGTGGCAGCAAG+AGG | 0.611745 | 1.3:+21691265 | None:intergenic |
| CCAAACAATGAAGTAACCAC+TGG | 0.612811 | 1.3:+21688309 | None:intergenic |
| TGGTTGCCAATATAACCAGT+TGG | 0.615251 | 1.3:+21688647 | None:intergenic |
| AGGATGACATCGTTTCTGAA+GGG | 0.617366 | 1.3:+21691009 | None:intergenic |
| AATTAGACGGGGATTGCCAG+TGG | 0.621632 | 1.3:-21688325 | MS.gene91098:CDS |
| GAGCAAGGGTTGTTTCTCAG+TGG | 0.633189 | 1.3:-21689829 | MS.gene91098:CDS |
| AGGATGAATGGAATTTATGG+GGG | 0.638502 | 1.3:+21688494 | None:intergenic |
| GAGTTGAAAGAGCATTGGGG+AGG | 0.639356 | 1.3:-21688243 | MS.gene91098:CDS |
| TTCTGAACCCACAATTGATG+AGG | 0.640325 | 1.3:-21689801 | MS.gene91098:CDS |
| ATAGCCATATCATGACCAGA+AGG | 0.649543 | 1.3:+21690974 | None:intergenic |
| TCAAGAACTCCAAAGCAGCA+AGG | 0.655263 | 1.3:+21689511 | None:intergenic |
| TGATCAGTCACAGATTAAGA+CGG | 0.667093 | 1.3:-21691041 | MS.gene91098:CDS |
| CCACACCAAACTGAATACAA+TGG | 0.683154 | 1.3:+21689962 | None:intergenic |
| ATACAAGTCAAAATCCAACA+TGG | 0.696805 | 1.3:+21691090 | None:intergenic |
| GTTGAGTTGAAAGAGCATTG+GGG | 0.697316 | 1.3:-21688246 | MS.gene91098:CDS |
| TTGAGTTTGAGAACAAGGTG+TGG | 0.700536 | 1.3:+21691255 | None:intergenic |
| GAAAATAGTCCAATTAGACG+GGG | 0.710030 | 1.3:-21688336 | MS.gene91098:CDS |
| TTGATGTCGAAGCAGCCACG+TGG | 0.734249 | 1.3:-21689492 | MS.gene91098:CDS |
| CCTACTCTTACATTGCCACG+TGG | 0.735405 | 1.3:+21689477 | None:intergenic |
| TACATGGTATGTGATTGGAA+GGG | 0.767981 | 1.3:-21688163 | MS.gene91098:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATAAACTAAAAAGAA+AGG | + | chr1.3:21688530-21688549 | None:intergenic | 10.0% |
| !! | TTTATAACAAAATAACATTA+TGG | - | chr1.3:21689143-21689162 | MS.gene91098:intron | 10.0% |
| !!! | TTTTTAGTTTATTATAATTG+TGG | - | chr1.3:21688533-21688552 | MS.gene91098:CDS | 10.0% |
| !! | AAAACAAATAAGAATTCAAT+TGG | + | chr1.3:21689334-21689353 | None:intergenic | 15.0% |
| !! | AAATTAATTAACCTTATCAT+AGG | + | chr1.3:21688498-21688517 | None:intergenic | 15.0% |
| !! | AATTATTCAATGAATATACA+AGG | + | chr1.3:21689791-21689810 | None:intergenic | 15.0% |
| !!! | ATTGAATTCTTATTTGTTTT+TGG | - | chr1.3:21689334-21689353 | MS.gene91098:intron | 15.0% |
| !!! | CAATTTATAGTTCTAAATTA+AGG | - | chr1.3:21688615-21688634 | MS.gene91098:CDS | 15.0% |
| !!! | GTTTCTATTTTAAGATTATA+AGG | - | chr1.3:21688949-21688968 | MS.gene91098:intron | 15.0% |
| !! | TATGAAGACTTATCATATAA+GGG | - | chr1.3:21690383-21690402 | MS.gene91098:intron | 20.0% |
| !! | TTGTAACTAAGAATTAAGAT+TGG | - | chr1.3:21689287-21689306 | MS.gene91098:intron | 20.0% |
| !! | TTTGTATAATGATATCTGAT+TGG | + | chr1.3:21689120-21689139 | None:intergenic | 20.0% |
| !!! | ATTCTTATTTGTTTTTGGTT+TGG | - | chr1.3:21689339-21689358 | MS.gene91098:intron | 20.0% |
| !!! | ATTGATTTTAGTATGTTTGA+AGG | - | chr1.3:21690106-21690125 | MS.gene91098:intron | 20.0% |
| ! | AAAGTGAGTTTATAGTGAAA+TGG | + | chr1.3:21690284-21690303 | None:intergenic | 25.0% |
| ! | AATTTATCCTAAAGAGCTTA+TGG | - | chr1.3:21690481-21690500 | MS.gene91098:intron | 25.0% |
| ! | ACAAATAAGAATTCAATTGG+AGG | + | chr1.3:21689331-21689350 | None:intergenic | 25.0% |
| ! | ATGAAAATAGTCCAATTAGA+CGG | - | chr1.3:21691058-21691077 | MS.gene91098:CDS | 25.0% |
| ! | ATTATTTCCATAAGCTCTTT+AGG | + | chr1.3:21690491-21690510 | None:intergenic | 25.0% |
| ! | CAGTAAAATACAAGTAAACA+CGG | + | chr1.3:21688840-21688859 | None:intergenic | 25.0% |
| ! | GTATGAAGACTTATCATATA+AGG | - | chr1.3:21690382-21690401 | MS.gene91098:intron | 25.0% |
| ! | TAATTCACAGTGAAATAATG+AGG | + | chr1.3:21690649-21690668 | None:intergenic | 25.0% |
| ! | TGTATAAACTATTCTGTACT+TGG | - | chr1.3:21689668-21689687 | MS.gene91098:intron | 25.0% |
| ! | TTCATATAAGCTATAAACTG+TGG | - | chr1.3:21690454-21690473 | MS.gene91098:intron | 25.0% |
| !! | ACTTAACAAAAGCACAAATT+TGG | + | chr1.3:21688911-21688930 | None:intergenic | 25.0% |
| !! | GTTGATGAAATAAAATGTGT+TGG | - | chr1.3:21689485-21689504 | MS.gene91098:CDS | 25.0% |
| !! | TTAAGTTGTTTATCGAACAA+AGG | + | chr1.3:21690349-21690368 | None:intergenic | 25.0% |
| !! | TTTGCTATAGAATCAGTTTA+TGG | - | chr1.3:21689542-21689561 | MS.gene91098:intron | 25.0% |
| !!! | GAATTTTTGGATTCACTTTT+TGG | - | chr1.3:21690054-21690073 | MS.gene91098:intron | 25.0% |
| !!! | GATTTTAGCAAAATCAATTC+TGG | + | chr1.3:21688762-21688781 | None:intergenic | 25.0% |
| !!! | TAGAAAAACAAGACTTGTTT+TGG | + | chr1.3:21688232-21688251 | None:intergenic | 25.0% |
| AAAACACATTCGAACTTTGA+TGG | + | chr1.3:21690200-21690219 | None:intergenic | 30.0% | |
| AAACATTTGTGAGACTGTAT+GGG | + | chr1.3:21690563-21690582 | None:intergenic | 30.0% | |
| AGTAACAGTAGACATGTTTA+TGG | + | chr1.3:21688168-21688187 | None:intergenic | 30.0% | |
| ATACAAGTCAAAATCCAACA+TGG | + | chr1.3:21688309-21688328 | None:intergenic | 30.0% | |
| CAATAAGATCAATTTCCAAC+TGG | - | chr1.3:21690734-21690753 | MS.gene91098:intron | 30.0% | |
| CAATTTCCAACTGGTTATAT+TGG | - | chr1.3:21690743-21690762 | MS.gene91098:intron | 30.0% | |
| CTCAAACATATTTGTAGATG+TGG | - | chr1.3:21689969-21689988 | MS.gene91098:CDS | 30.0% | |
| CTCTTGGTTGCAATATATAT+TGG | - | chr1.3:21691203-21691222 | MS.gene91098:intron | 30.0% | |
| GCTTATAGTATGACAAAATG+TGG | - | chr1.3:21689364-21689383 | MS.gene91098:intron | 30.0% | |
| TAAACATTTGTGAGACTGTA+TGG | + | chr1.3:21690564-21690583 | None:intergenic | 30.0% | |
| TAACTCAATCACTTTCACAT+TGG | - | chr1.3:21690304-21690323 | MS.gene91098:intron | 30.0% | |
| TATTGTTCAACTCACTTTCA+CGG | - | chr1.3:21690233-21690252 | MS.gene91098:intron | 30.0% | |
| TCAAGTTAGAATCAACTCTA+CGG | + | chr1.3:21690154-21690173 | None:intergenic | 30.0% | |
| TCAGGATGAATGGAATTTAT+GGG | + | chr1.3:21690907-21690926 | None:intergenic | 30.0% | |
| TCGATTTCTATTTCCAATGT+TGG | + | chr1.3:21691277-21691296 | None:intergenic | 30.0% | |
| TCTATTACTCATGTCATGTA+TGG | - | chr1.3:21688573-21688592 | MS.gene91098:CDS | 30.0% | |
| TCTCTTAGCTTACTAAGATT+TGG | + | chr1.3:21690832-21690851 | None:intergenic | 30.0% | |
| TGAAAATAGTCCAATTAGAC+GGG | - | chr1.3:21691059-21691078 | MS.gene91098:CDS | 30.0% | |
| TGAAGGCAAGAGATTAAAAT+TGG | - | chr1.3:21690123-21690142 | MS.gene91098:intron | 30.0% | |
| TTTCTCTACTCTTACATGTA+AGG | - | chr1.3:21688259-21688278 | MS.gene91098:CDS | 30.0% | |
| ! | ACAAAAGAAGATCTCTTTTC+AGG | - | chr1.3:21690669-21690688 | MS.gene91098:intron | 30.0% |
| ! | CAGATTAAAGCTGTAGTTTT+AGG | - | chr1.3:21689051-21689070 | MS.gene91098:intron | 30.0% |
| ! | GATCTCATAGGATTTTTGTA+TGG | - | chr1.3:21688794-21688813 | MS.gene91098:intron | 30.0% |
| ! | TTCTCAGGTGAATGAATTTT+TGG | - | chr1.3:21690041-21690060 | MS.gene91098:intron | 30.0% |
| !! | AATTCGTGCTTTGAAGATTA+AGG | + | chr1.3:21690626-21690645 | None:intergenic | 30.0% |
| !! | ATTCGTGCTTTGAAGATTAA+GGG | + | chr1.3:21690625-21690644 | None:intergenic | 30.0% |
| !! | ATTTATGGGGGTTTTATGTT+TGG | + | chr1.3:21690893-21690912 | None:intergenic | 30.0% |
| !! | TCAGATGGATTGATTTAACA+AGG | - | chr1.3:21689202-21689221 | MS.gene91098:intron | 30.0% |
| !! | TTTGACTTGTATGATCTTCT+AGG | - | chr1.3:21688317-21688336 | MS.gene91098:CDS | 30.0% |
| !! | TTTTGGAAATTTGAGGGTTT+TGG | + | chr1.3:21688215-21688234 | None:intergenic | 30.0% |
| !!! | AGACTTGTTTTGGAAATTTG+AGG | + | chr1.3:21688222-21688241 | None:intergenic | 30.0% |
| !!! | GACTTGTTTTGGAAATTTGA+GGG | + | chr1.3:21688221-21688240 | None:intergenic | 30.0% |
| !!! | GTTTTAAAATTCTATGTCGC+TGG | - | chr1.3:21688669-21688688 | MS.gene91098:CDS | 30.0% |
| AAAAGCTACCAAGTATTCTC+AGG | - | chr1.3:21690026-21690045 | MS.gene91098:intron | 35.0% | |
| AAAGGCTAAGCATAAAAGAG+TGG | + | chr1.3:21690331-21690350 | None:intergenic | 35.0% | |
| AAGGTATGCAACTTCAATTG+CGG | - | chr1.3:21688634-21688653 | MS.gene91098:CDS | 35.0% | |
| AATCAGTTTATGGAAGAGCA+AGG | - | chr1.3:21689552-21689571 | MS.gene91098:intron | 35.0% | |
| ACATATTTGTAGATGTGGAG+AGG | - | chr1.3:21689974-21689993 | MS.gene91098:CDS | 35.0% | |
| ACATTCTTGATTCTCTTTGG+AGG | + | chr1.3:21690702-21690721 | None:intergenic | 35.0% | |
| AGCTTACTAAGATTTGGATC+AGG | + | chr1.3:21690826-21690845 | None:intergenic | 35.0% | |
| AGGATGAATGGAATTTATGG+GGG | + | chr1.3:21690905-21690924 | None:intergenic | 35.0% | |
| ATCAGTTTATGGAAGAGCAA+GGG | - | chr1.3:21689553-21689572 | MS.gene91098:intron | 35.0% | |
| ATGACTCAAATCCAAGACAT+CGG | - | chr1.3:21689236-21689255 | MS.gene91098:intron | 35.0% | |
| CAAGTTAGAATCAACTCTAC+GGG | + | chr1.3:21690153-21690172 | None:intergenic | 35.0% | |
| CAGGATGAATGGAATTTATG+GGG | + | chr1.3:21690906-21690925 | None:intergenic | 35.0% | |
| CATAAATTCCATTCATCCTG+AGG | - | chr1.3:21690906-21690925 | MS.gene91098:intron | 35.0% | |
| CTCAGGATGAATGGAATTTA+TGG | + | chr1.3:21690908-21690927 | None:intergenic | 35.0% | |
| CTGACATTCTTGATTCTCTT+TGG | + | chr1.3:21690705-21690724 | None:intergenic | 35.0% | |
| CTGAGAGTTGCAATCAAATA+CGG | - | chr1.3:21689721-21689740 | MS.gene91098:intron | 35.0% | |
| GAAAATAGTCCAATTAGACG+GGG | - | chr1.3:21691060-21691079 | MS.gene91098:CDS | 35.0% | |
| GAAGACCATTGTATTCAGTT+TGG | - | chr1.3:21689429-21689448 | MS.gene91098:CDS | 35.0% | |
| GCAAAGATCACAGAATTCAA+AGG | - | chr1.3:21689398-21689417 | MS.gene91098:CDS | 35.0% | |
| GGTTACTTCATTGTTTGGTA+TGG | - | chr1.3:21691092-21691111 | MS.gene91098:CDS | 35.0% | |
| GTAGTAGTACTAGTTGAAGA+AGG | + | chr1.3:21690961-21690980 | None:intergenic | 35.0% | |
| TACATGGTATGTGATTGGAA+GGG | - | chr1.3:21691233-21691252 | MS.gene91098:intron | 35.0% | |
| TGAATTGCCTCATCAATTGT+GGG | + | chr1.3:21689605-21689624 | None:intergenic | 35.0% | |
| TGATCAGTCACAGATTAAGA+CGG | - | chr1.3:21688355-21688374 | MS.gene91098:CDS | 35.0% | |
| TGATGCTTATGCCATTCTTT+CGG | - | chr1.3:21688454-21688473 | MS.gene91098:CDS | 35.0% | |
| TGTAGAAGAGTCTATTCAGA+TGG | - | chr1.3:21689187-21689206 | MS.gene91098:intron | 35.0% | |
| TGTATGAGAGTAGTGTTAAG+AGG | - | chr1.3:21689003-21689022 | MS.gene91098:intron | 35.0% | |
| TTCATTCACCTGAGAATACT+TGG | + | chr1.3:21690037-21690056 | None:intergenic | 35.0% | |
| TTGAATTGCCTCATCAATTG+TGG | + | chr1.3:21689606-21689625 | None:intergenic | 35.0% | |
| ! | ATATATTGGTAGCAGCTACA+TGG | - | chr1.3:21691217-21691236 | MS.gene91098:intron | 35.0% |
| ! | ATGGTTTGAGTTTGAGAACA+AGG | + | chr1.3:21688149-21688168 | None:intergenic | 35.0% |
| ! | CAGCTAACAAAGCACATTTT+AGG | + | chr1.3:21689514-21689533 | None:intergenic | 35.0% |
| !! | AAGTTTTTCAGCATCCATGT+TGG | - | chr1.3:21688292-21688311 | MS.gene91098:CDS | 35.0% |
| !! | AGTTGAGTTGAAAGAGCATT+GGG | - | chr1.3:21691149-21691168 | MS.gene91098:intron | 35.0% |
| AAATCAATTCTGGACGCACA+AGG | + | chr1.3:21688752-21688771 | None:intergenic | 40.0% | |
| AAGGGTTGCTGTAGAATTTG+TGG | - | chr1.3:21691251-21691270 | MS.gene91098:CDS | 40.0% | |
| AATCAATTCTGGACGCACAA+GGG | + | chr1.3:21688751-21688770 | None:intergenic | 40.0% | |
| ACAGAATTCAAAGGCTTCAC+TGG | - | chr1.3:21689407-21689426 | MS.gene91098:CDS | 40.0% | |
| ACTTACGAAATGCAGTTGAC+AGG | + | chr1.3:21689635-21689654 | None:intergenic | 40.0% | |
| AGCAAATGGATCCGAAAGAA+TGG | + | chr1.3:21688468-21688487 | None:intergenic | 40.0% | |
| AGGATGACATCGTTTCTGAA+GGG | + | chr1.3:21688390-21688409 | None:intergenic | 40.0% | |
| AGTATGACAAAATGTGGTGC+AGG | - | chr1.3:21689370-21689389 | MS.gene91098:intron | 40.0% | |
| ATAGCCATATCATGACCAGA+AGG | + | chr1.3:21688425-21688444 | None:intergenic | 40.0% | |
| CCAAACAATGAAGTAACCAC+TGG | + | chr1.3:21691090-21691109 | None:intergenic | 40.0% | |
| CCAATATTCCTCAGGATGAA+TGG | + | chr1.3:21690917-21690936 | None:intergenic | 40.0% | |
| CCACACCAAACTGAATACAA+TGG | + | chr1.3:21689437-21689456 | None:intergenic | 40.0% | |
| CCAGTGGTTACTTCATTGTT+TGG | - | chr1.3:21691087-21691106 | MS.gene91098:CDS | 40.0% | |
| CCATTCATCCTGAGGAATAT+TGG | - | chr1.3:21690914-21690933 | MS.gene91098:CDS | 40.0% | |
| CTACATGGTATGTGATTGGA+AGG | - | chr1.3:21691232-21691251 | MS.gene91098:intron | 40.0% | |
| GAAGGAAGAACAACAGTTGA+TGG | + | chr1.3:21690943-21690962 | None:intergenic | 40.0% | |
| GCAAATGTAGCCTTCTCAAT+TGG | + | chr1.3:21690991-21691010 | None:intergenic | 40.0% | |
| GCAGTTAGGTTACATGAAGT+AGG | - | chr1.3:21691117-21691136 | MS.gene91098:CDS | 40.0% | |
| GTAGAATTTGTGGCCAACAT+TGG | - | chr1.3:21691261-21691280 | MS.gene91098:CDS | 40.0% | |
| GTGAGATTGTACGATCTCAT+AGG | - | chr1.3:21688782-21688801 | MS.gene91098:intron | 40.0% | |
| TACTACTGCACCAATTGAGA+AGG | - | chr1.3:21690978-21690997 | MS.gene91098:CDS | 40.0% | |
| TCATAGGCAAAACGAGCAAA+TGG | + | chr1.3:21688482-21688501 | None:intergenic | 40.0% | |
| TCATCTCTTAACCGATGTCT+TGG | + | chr1.3:21689250-21689269 | None:intergenic | 40.0% | |
| TGGAAATCGTTAACAGCTCT+TGG | - | chr1.3:21691187-21691206 | MS.gene91098:intron | 40.0% | |
| TGGTTGCCAATATAACCAGT+TGG | + | chr1.3:21690752-21690771 | None:intergenic | 40.0% | |
| TTCTGAACCCACAATTGATG+AGG | - | chr1.3:21689595-21689614 | MS.gene91098:intron | 40.0% | |
| TTGAGTTTGAGAACAAGGTG+TGG | + | chr1.3:21688144-21688163 | None:intergenic | 40.0% | |
| ! | CCATTGTATTCAGTTTGGTG+TGG | - | chr1.3:21689434-21689453 | MS.gene91098:CDS | 40.0% |
| ! | CGCAACTTTTGTCATGCTTT+TGG | + | chr1.3:21690791-21690810 | None:intergenic | 40.0% |
| ! | GAGAAGGCTACATTTGCTAA+AGG | - | chr1.3:21690994-21691013 | MS.gene91098:CDS | 40.0% |
| ! | TGCTCGTTTTGCCTATGATA+AGG | - | chr1.3:21688484-21688503 | MS.gene91098:CDS | 40.0% |
| !! | CAGTTGAGTTGAAAGAGCAT+TGG | - | chr1.3:21691148-21691167 | MS.gene91098:intron | 40.0% |
| !! | GTTGAGTTGAAAGAGCATTG+GGG | - | chr1.3:21691150-21691169 | MS.gene91098:intron | 40.0% |
| !! | TTGAAGATTAAGGGCTGGTT+TGG | + | chr1.3:21690616-21690635 | None:intergenic | 40.0% |
| ATCAATTCTGGACGCACAAG+GGG | + | chr1.3:21688750-21688769 | None:intergenic | 45.0% | |
| CAGGATGACATCGTTTCTGA+AGG | + | chr1.3:21688391-21688410 | None:intergenic | 45.0% | |
| CGATGTCATCCTGATATTGC+TGG | - | chr1.3:21688398-21688417 | MS.gene91098:CDS | 45.0% | |
| GATGGAGTCCAATATTCCTC+AGG | + | chr1.3:21690925-21690944 | None:intergenic | 45.0% | |
| GCAGCTACATGGTATGTGAT+TGG | - | chr1.3:21691228-21691247 | MS.gene91098:intron | 45.0% | |
| TCAAGAACTCCAAAGCAGCA+AGG | + | chr1.3:21689888-21689907 | None:intergenic | 45.0% | |
| TGGCAACCAAATTGTGCAAC+TGG | - | chr1.3:21690763-21690782 | MS.gene91098:intron | 45.0% | |
| TGGTCCTTCTGGTCATGATA+TGG | - | chr1.3:21688418-21688437 | MS.gene91098:CDS | 45.0% | |
| TGTCTATGCGACAGCAATTG+AGG | + | chr1.3:21689747-21689766 | None:intergenic | 45.0% | |
| TGTTTGGTATGGCTGCAGTT+AGG | - | chr1.3:21691103-21691122 | MS.gene91098:CDS | 45.0% | |
| ! | ATTCTATGTCGCTGGTGTCA+AGG | - | chr1.3:21688677-21688696 | MS.gene91098:CDS | 45.0% |
| !! | AGCAAGGGTTGTTTCTCAGT+GGG | - | chr1.3:21689568-21689587 | MS.gene91098:intron | 45.0% |
| !! | GTGCTTTGAAGATTAAGGGC+TGG | + | chr1.3:21690621-21690640 | None:intergenic | 45.0% |
| !! | TTGGTGCCAGTTGCACAATT+TGG | + | chr1.3:21690772-21690791 | None:intergenic | 45.0% |
| !!! | GAGGGTTTTGGAGTGAAGAA+AGG | + | chr1.3:21688203-21688222 | None:intergenic | 45.0% |
| AATTAGACGGGGATTGCCAG+TGG | - | chr1.3:21691071-21691090 | MS.gene91098:CDS | 50.0% | |
| ACTGGCAATCCCCGTCTAAT+TGG | + | chr1.3:21691072-21691091 | None:intergenic | 50.0% | |
| CCACGTGGCAATGTAAGAGT+AGG | - | chr1.3:21689919-21689938 | MS.gene91098:CDS | 50.0% | |
| CCAGAAGGACCAGCAATATC+AGG | + | chr1.3:21688410-21688429 | None:intergenic | 50.0% | |
| CCTACTCTTACATTGCCACG+TGG | + | chr1.3:21689922-21689941 | None:intergenic | 50.0% | |
| CCTGATATTGCTGGTCCTTC+TGG | - | chr1.3:21688407-21688426 | MS.gene91098:CDS | 50.0% | |
| GAACTCCAAAGCAGCAAGGT+TGG | + | chr1.3:21689884-21689903 | None:intergenic | 50.0% | |
| GTAGGTGCAAGTCATACAGC+AGG | - | chr1.3:21689937-21689956 | MS.gene91098:CDS | 50.0% | |
| ! | GAGATCCAACCTTGCTGCTT+TGG | - | chr1.3:21689876-21689895 | MS.gene91098:CDS | 50.0% |
| ! | TTGGGGAGGTTCTCTAGCTT+TGG | - | chr1.3:21691167-21691186 | MS.gene91098:intron | 50.0% |
| !! | GAGCAAGGGTTGTTTCTCAG+TGG | - | chr1.3:21689567-21689586 | MS.gene91098:intron | 50.0% |
| !! | GAGTTGAAAGAGCATTGGGG+AGG | - | chr1.3:21691153-21691172 | MS.gene91098:intron | 50.0% |
| GAACAAGGTGTGGCAGCAAG+AGG | + | chr1.3:21688134-21688153 | None:intergenic | 55.0% | |
| TTGATGTCGAAGCAGCCACG+TGG | - | chr1.3:21689904-21689923 | MS.gene91098:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 21688119 | 21691299 | 21688119 | ID=MS.gene91098 |
| chr1.3 | mRNA | 21688119 | 21691299 | 21688119 | ID=MS.gene91098.t1;Parent=MS.gene91098 |
| chr1.3 | exon | 21691237 | 21691299 | 21691237 | ID=MS.gene91098.t1.exon1;Parent=MS.gene91098.t1 |
| chr1.3 | CDS | 21691237 | 21691299 | 21691237 | ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1 |
| chr1.3 | exon | 21690913 | 21691137 | 21690913 | ID=MS.gene91098.t1.exon2;Parent=MS.gene91098.t1 |
| chr1.3 | CDS | 21690913 | 21691137 | 21690913 | ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1 |
| chr1.3 | exon | 21689770 | 21690026 | 21689770 | ID=MS.gene91098.t1.exon3;Parent=MS.gene91098.t1 |
| chr1.3 | CDS | 21689770 | 21690026 | 21689770 | ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1 |
| chr1.3 | exon | 21689371 | 21689551 | 21689371 | ID=MS.gene91098.t1.exon4;Parent=MS.gene91098.t1 |
| chr1.3 | CDS | 21689371 | 21689551 | 21689371 | ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1 |
| chr1.3 | exon | 21688119 | 21688727 | 21688119 | ID=MS.gene91098.t1.exon5;Parent=MS.gene91098.t1 |
| chr1.3 | CDS | 21688119 | 21688727 | 21688119 | ID=cds.MS.gene91098.t1;Parent=MS.gene91098.t1 |
| Gene Sequence |
| Protein sequence |
