Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94068.t1 | XP_003614713.1 | 96.7 | 212 | 6 | 1 | 1 | 211 | 1 | 212 | 7.00E-109 | 403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94068.t1 | Q6IDL4 | 62.4 | 205 | 74 | 2 | 10 | 211 | 13 | 217 | 7.9e-69 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94068.t1 | G7JXB5 | 96.7 | 212 | 6 | 1 | 1 | 211 | 1 | 212 | 5.0e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene94068 | 0.821886 | 3.18E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene94068 | 0.830755 | 2.46E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene94068 | 0.81132 | 7.43E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene94068 | 0.803434 | 3.49E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene94068 | 0.81927 | 1.27E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene94068 | 0.851022 | 1.16E-60 | -1.69E-46 |
| MS.gene051003 | MS.gene94068 | 0.85328 | 2.65E-61 | -1.69E-46 |
| MS.gene051234 | MS.gene94068 | 0.851006 | 1.18E-60 | -1.69E-46 |
| MS.gene051343 | MS.gene94068 | 0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene94068 | 0.820763 | 5.78E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene94068 | 0.810031 | 1.41E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene94068 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene94068 | 0.81489 | 1.22E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene94068 | 0.835885 | 1.29E-56 | -1.69E-46 |
| MS.gene052016 | MS.gene94068 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene94068 | 0.80745 | 5.02E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene94068 | 0.819211 | 1.31E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene94068 | 0.811159 | 8.05E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene94068 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene94068 | 0.837305 | 5.62E-57 | -1.69E-46 |
| MS.gene052947 | MS.gene94068 | 0.801019 | 1.10E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene94068 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene94068 | 0.800614 | 1.33E-48 | -1.69E-46 |
| MS.gene053298 | MS.gene94068 | 0.808792 | 2.60E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene94068 | 0.815054 | 1.13E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene94068 | 0.88253 | 9.64E-71 | -1.69E-46 |
| MS.gene055468 | MS.gene94068 | 0.810408 | 1.17E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene94068 | 0.817044 | 4.04E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene94068 | 0.859341 | 4.42E-63 | -1.69E-46 |
| MS.gene055864 | MS.gene94068 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene94068 | -0.806501 | 7.98E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene94068 | 0.826998 | 1.99E-54 | -1.69E-46 |
| MS.gene056390 | MS.gene94068 | 0.800203 | 1.61E-48 | -1.69E-46 |
| MS.gene056403 | MS.gene94068 | 0.809525 | 1.81E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene94068 | -0.812338 | 4.46E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene94068 | 0.801825 | 7.50E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene94068 | 0.804193 | 2.43E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene94068 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene94068 | 0.828514 | 8.62E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene94068 | 0.838587 | 2.63E-57 | -1.69E-46 |
| MS.gene058758 | MS.gene94068 | 0.809227 | 2.10E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene94068 | 0.847322 | 1.24E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene94068 | 0.846611 | 1.95E-59 | -1.69E-46 |
| MS.gene059171 | MS.gene94068 | 0.802126 | 6.50E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene94068 | 0.839685 | 1.37E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene94068 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene94068 | 0.836743 | 7.82E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94068.t1 | MTR_5g058140 | 96.698 | 212 | 6 | 1 | 1 | 211 | 1 | 212 | 1.50e-150 | 416 |
| MS.gene94068.t1 | MTR_3g072600 | 74.178 | 213 | 48 | 3 | 5 | 211 | 6 | 217 | 1.74e-111 | 318 |
| MS.gene94068.t1 | MTR_2g007210 | 67.327 | 202 | 64 | 2 | 12 | 211 | 5 | 206 | 3.43e-97 | 281 |
| MS.gene94068.t1 | MTR_8g088940 | 65.550 | 209 | 67 | 3 | 8 | 211 | 3 | 211 | 1.61e-88 | 259 |
| MS.gene94068.t1 | MTR_8g088980 | 72.222 | 144 | 39 | 1 | 69 | 211 | 19 | 162 | 1.07e-74 | 223 |
| MS.gene94068.t1 | MTR_4g082315 | 44.041 | 193 | 102 | 2 | 25 | 211 | 24 | 216 | 8.23e-60 | 187 |
| MS.gene94068.t1 | MTR_6g012770 | 41.209 | 182 | 100 | 3 | 37 | 211 | 31 | 212 | 5.73e-51 | 164 |
| MS.gene94068.t1 | MTR_7g011490 | 33.971 | 209 | 131 | 3 | 10 | 211 | 4 | 212 | 3.86e-46 | 152 |
| MS.gene94068.t1 | MTR_5g042260 | 34.286 | 210 | 129 | 5 | 11 | 211 | 10 | 219 | 1.69e-41 | 140 |
| MS.gene94068.t1 | MTR_5g042270 | 34.286 | 175 | 114 | 1 | 38 | 211 | 11 | 185 | 7.70e-38 | 130 |
| MS.gene94068.t1 | MTR_5g042320 | 33.649 | 211 | 130 | 5 | 11 | 211 | 13 | 223 | 7.17e-32 | 115 |
| MS.gene94068.t1 | MTR_5g042320 | 32.934 | 167 | 102 | 5 | 11 | 167 | 13 | 179 | 9.36e-21 | 86.3 |
| MS.gene94068.t1 | MTR_5g042300 | 30.328 | 122 | 71 | 2 | 90 | 211 | 41 | 148 | 6.54e-14 | 66.6 |
| MS.gene94068.t1 | MTR_7g095690 | 28.019 | 207 | 136 | 4 | 7 | 207 | 5 | 204 | 6.61e-14 | 68.2 |
| MS.gene94068.t1 | MTR_1g102720 | 26.961 | 204 | 136 | 6 | 11 | 207 | 9 | 206 | 8.70e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94068.t1 | AT1G09580 | 62.439 | 205 | 74 | 2 | 10 | 211 | 13 | 217 | 3.26e-94 | 274 |
| MS.gene94068.t1 | AT1G21900 | 63.592 | 206 | 67 | 4 | 14 | 211 | 11 | 216 | 3.67e-91 | 266 |
| MS.gene94068.t1 | AT1G57620 | 60.488 | 205 | 78 | 2 | 10 | 211 | 8 | 212 | 1.88e-89 | 262 |
| MS.gene94068.t1 | AT3G10780 | 52.174 | 207 | 92 | 2 | 12 | 211 | 11 | 217 | 1.72e-66 | 204 |
| MS.gene94068.t1 | AT1G26690 | 39.713 | 209 | 115 | 2 | 14 | 211 | 6 | 214 | 2.47e-55 | 175 |
| MS.gene94068.t1 | AT1G14010 | 39.024 | 205 | 119 | 2 | 13 | 211 | 8 | 212 | 2.63e-53 | 170 |
| MS.gene94068.t1 | AT1G69460 | 38.462 | 208 | 119 | 3 | 10 | 211 | 10 | 214 | 8.93e-52 | 166 |
| MS.gene94068.t1 | AT2G03290 | 37.949 | 195 | 114 | 1 | 24 | 211 | 19 | 213 | 2.42e-48 | 157 |
| MS.gene94068.t1 | AT3G29070 | 37.629 | 194 | 115 | 2 | 24 | 211 | 32 | 225 | 1.30e-46 | 153 |
| MS.gene94068.t1 | AT2G03040 | 35.135 | 148 | 89 | 1 | 24 | 164 | 19 | 166 | 7.31e-30 | 108 |
| MS.gene94068.t1 | AT3G22845 | 25.366 | 205 | 140 | 5 | 9 | 207 | 10 | 207 | 7.46e-12 | 62.8 |
Find 37 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTATGTGGCATGCTTT+TGG | 0.304500 | 5.4:-45841846 | MS.gene94068:CDS |
| GTCAGCCTTGATTGGAAAAC+TGG | 0.328485 | 5.4:-45841790 | MS.gene94068:CDS |
| TTGCAGGTAACATCTCCTTT+TGG | 0.356646 | 5.4:-45841934 | MS.gene94068:intron |
| CTGACACTTACACTACCTTC+TGG | 0.357413 | 5.4:+45841808 | None:intergenic |
| CGATTATCTAATTTATTTGA+AGG | 0.366207 | 5.4:-45841560 | MS.gene94068:CDS |
| TAGTTTCTGGATTGCAACTT+TGG | 0.395311 | 5.4:-45840812 | MS.gene94068:CDS |
| TGGAATTTCAGCAAAGGATT+GGG | 0.395382 | 5.4:-45841770 | MS.gene94068:CDS |
| CTGGAATTTCAGCAAAGGAT+TGG | 0.405549 | 5.4:-45841771 | MS.gene94068:CDS |
| TGGTTGACCATTCCAAGTTC+AGG | 0.407339 | 5.4:-45844567 | MS.gene94068:CDS |
| AGGGTGTTGAACTTGAAATC+AGG | 0.420862 | 5.4:-45841612 | MS.gene94068:CDS |
| ACACATTTAGTTCCTGAACT+TGG | 0.421337 | 5.4:+45844555 | None:intergenic |
| TGGTGAACGTTGTTTCCAAA+AGG | 0.464734 | 5.4:+45841919 | None:intergenic |
| CAGGAAGCTCGAAGGAATAG+TGG | 0.469265 | 5.4:-45841593 | MS.gene94068:CDS |
| GTGTAAGTGTCAGCCTTGAT+TGG | 0.480040 | 5.4:-45841798 | MS.gene94068:CDS |
| TACTATGTTGTAACTGATGA+AGG | 0.487186 | 5.4:-45844492 | MS.gene94068:CDS |
| TGGTTTAGTATCATGTCCCT+TGG | 0.503070 | 5.4:-45840846 | MS.gene94068:CDS |
| TGACACTTACACTACCTTCT+GGG | 0.510439 | 5.4:+45841809 | None:intergenic |
| AAACAAATGCTCGAGTCGCT+TGG | 0.510777 | 5.4:-45840866 | MS.gene94068:CDS |
| TTTAGTTCCTGAACTTGGAA+TGG | 0.516063 | 5.4:+45844560 | None:intergenic |
| TGCCACATAATTTCCACTCT+CGG | 0.522318 | 5.4:+45841855 | None:intergenic |
| AAACTAAAACGCAGAGACCA+AGG | 0.543213 | 5.4:+45840829 | None:intergenic |
| GAAAACTGGAATTTCAGCAA+AGG | 0.546642 | 5.4:-45841776 | MS.gene94068:CDS |
| GCATTTACAACTACCGAGAG+TGG | 0.562957 | 5.4:-45841868 | MS.gene94068:CDS |
| CAAGCAATGAAGTTAAGAGA+TGG | 0.564083 | 5.4:-45844657 | None:intergenic |
| TCAAATAAATTAGATAATCG+TGG | 0.574741 | 5.4:+45841563 | None:intergenic |
| ATAAATTAGATAATCGTGGA+TGG | 0.583572 | 5.4:+45841567 | None:intergenic |
| TACCGAGAGTGGAAATTATG+TGG | 0.589093 | 5.4:-45841857 | MS.gene94068:CDS |
| AACTAAAACGCAGAGACCAA+GGG | 0.592971 | 5.4:+45840830 | None:intergenic |
| AGGAACTAAATGTGTGTCTG+AGG | 0.602454 | 5.4:-45844547 | MS.gene94068:CDS |
| GATTAGGGAACATACCTTCG+CGG | 0.602938 | 5.4:+45844455 | None:intergenic |
| TCTTCACACTATTTCCGCGA+AGG | 0.616024 | 5.4:-45844469 | MS.gene94068:intron |
| CTTGAAATCAGGAAGCTCGA+AGG | 0.630601 | 5.4:-45841601 | MS.gene94068:CDS |
| CATAATGAAAACGTTACACA+AGG | 0.640271 | 5.4:-45841898 | MS.gene94068:CDS |
| TGCAAAGAAAGAAAAGATTG+AGG | 0.640940 | 5.4:-45841740 | MS.gene94068:intron |
| GCTACAGGGAAGCAACGATG+AGG | 0.655281 | 5.4:-45840902 | MS.gene94068:intron |
| CTACAGGGAAGCAACGATGA+GGG | 0.656889 | 5.4:-45840901 | MS.gene94068:intron |
| ATGGAAGGAAAACACCCAGA+AGG | 0.668528 | 5.4:-45841823 | MS.gene94068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGATATTAATCAAATT+CGG | - | chr5.4:45843228-45843247 | MS.gene94068:intron | 10.0% |
| !!! | ACAATTAAATTGATAATTTA+AGG | - | chr5.4:45843428-45843447 | MS.gene94068:intron | 10.0% |
| !!! | CAATTAAATTGATAATTTAA+GGG | - | chr5.4:45843429-45843448 | MS.gene94068:intron | 10.0% |
| !!! | TATTTAATTTATATTTTTGC+AGG | - | chr5.4:45843474-45843493 | MS.gene94068:intron | 10.0% |
| !!! | TTTAAAATCACATATATAAT+TGG | - | chr5.4:45843268-45843287 | MS.gene94068:intron | 10.0% |
| !! | AAAATCACATATATATTGAT+TGG | - | chr5.4:45843355-45843374 | MS.gene94068:intron | 15.0% |
| !! | ATATAAGCAAAACATTAATA+TGG | + | chr5.4:45843772-45843791 | None:intergenic | 15.0% |
| !! | ATTGTTATGTTAATGAAATT+TGG | - | chr5.4:45842291-45842310 | MS.gene94068:intron | 15.0% |
| !! | TAAACATAAAACATTTCAAA+TGG | + | chr5.4:45842511-45842530 | None:intergenic | 15.0% |
| !! | TTGTTATGTTAATGAAATTT+GGG | - | chr5.4:45842292-45842311 | MS.gene94068:intron | 15.0% |
| !!! | TACTTTTCATTTTTAAATTC+CGG | + | chr5.4:45841745-45841764 | None:intergenic | 15.0% |
| !!! | TATGAACTTAATACAATTTT+TGG | - | chr5.4:45841302-45841321 | MS.gene94068:intron | 15.0% |
| !!! | TTATTAGTTTTCAATTTTCA+TGG | - | chr5.4:45842570-45842589 | MS.gene94068:intron | 15.0% |
| !!! | TTCAAATTTTTGAACTTTTA+GGG | - | chr5.4:45841549-45841568 | MS.gene94068:intron | 15.0% |
| !! | AAATCACATATATAATTGGT+TGG | - | chr5.4:45843272-45843291 | MS.gene94068:intron | 20.0% |
| !! | ACAAAAATTATAAAACAAGC+AGG | + | chr5.4:45841279-45841298 | None:intergenic | 20.0% |
| !! | ATATAACTTCAACAAACAAA+AGG | + | chr5.4:45842418-45842437 | None:intergenic | 20.0% |
| !! | CAGAAATCAAGTATAATTTA+AGG | - | chr5.4:45843169-45843188 | MS.gene94068:intron | 20.0% |
| !! | CGATTATCTAATTTATTTGA+AGG | - | chr5.4:45843864-45843883 | MS.gene94068:intron | 20.0% |
| !! | CTTAAATTATACTTGATTTC+TGG | + | chr5.4:45843171-45843190 | None:intergenic | 20.0% |
| !! | GAACTTAAAAAATGTATTAG+AGG | + | chr5.4:45844009-45844028 | None:intergenic | 20.0% |
| !! | GAGAATTTAATTAATACATG+CGG | + | chr5.4:45844226-45844245 | None:intergenic | 20.0% |
| !! | TCAAATAAATTAGATAATCG+TGG | + | chr5.4:45843864-45843883 | None:intergenic | 20.0% |
| !! | TCTAAAAAGTAATACATAGT+CGG | + | chr5.4:45843395-45843414 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTACCATGTTAT+AGG | + | chr5.4:45842219-45842238 | None:intergenic | 20.0% |
| !!! | GAAATGTTTTATGTTTATCT+TGG | - | chr5.4:45842514-45842533 | MS.gene94068:intron | 20.0% |
| !!! | GTTCAAATTTTTGAACTTTT+AGG | - | chr5.4:45841548-45841567 | MS.gene94068:intron | 20.0% |
| !!! | TAAATAGACATTTTGATAGA+GGG | - | chr5.4:45842601-45842620 | MS.gene94068:intron | 20.0% |
| !!! | TAAATATTTACTCTTTTGTC+CGG | + | chr5.4:45841168-45841187 | None:intergenic | 20.0% |
| !!! | TGATAGTTTTCAATTTTCAA+TGG | - | chr5.4:45842340-45842359 | MS.gene94068:intron | 20.0% |
| !!! | TTTAAAGTTTGATTAGATCA+GGG | - | chr5.4:45843911-45843930 | MS.gene94068:intron | 20.0% |
| !!! | TTTGTTTGTTGAAGTTATAT+GGG | - | chr5.4:45842418-45842437 | MS.gene94068:intron | 20.0% |
| !!! | TTTTAAAGTTTGATTAGATC+AGG | - | chr5.4:45843910-45843929 | MS.gene94068:intron | 20.0% |
| !!! | TTTTGTTTGTTGAAGTTATA+TGG | - | chr5.4:45842417-45842436 | MS.gene94068:intron | 20.0% |
| ! | AAAAATGGGTGAACTAAAAT+TGG | - | chr5.4:45841891-45841910 | MS.gene94068:CDS | 25.0% |
| ! | AATACAAAATTCCCCTAATT+TGG | + | chr5.4:45844034-45844053 | None:intergenic | 25.0% |
| ! | AATCAAAAGTTTACCAACAA+TGG | - | chr5.4:45841439-45841458 | MS.gene94068:intron | 25.0% |
| ! | ATAAAACATTTCATAGTGTC+CGG | - | chr5.4:45841723-45841742 | MS.gene94068:intron | 25.0% |
| ! | ATAAATTAGATAATCGTGGA+TGG | + | chr5.4:45843860-45843879 | None:intergenic | 25.0% |
| ! | ATACAAAATTCCCCTAATTT+GGG | + | chr5.4:45844033-45844052 | None:intergenic | 25.0% |
| ! | ATCTAAACTAAGCAATGATT+AGG | + | chr5.4:45840988-45841007 | None:intergenic | 25.0% |
| ! | CAAACTGAAATCAAACTTAA+GGG | + | chr5.4:45844117-45844136 | None:intergenic | 25.0% |
| ! | CAAATCTTCATTGATGTTAT+AGG | + | chr5.4:45842166-45842185 | None:intergenic | 25.0% |
| ! | GAAACTTAATACCTATAACA+TGG | - | chr5.4:45842205-45842224 | MS.gene94068:intron | 25.0% |
| ! | GGTGTATCATTAATTTCATA+CGG | - | chr5.4:45843932-45843951 | MS.gene94068:intron | 25.0% |
| ! | GTATGTTTGGAAATTTAAGA+GGG | + | chr5.4:45844095-45844114 | None:intergenic | 25.0% |
| ! | TATGTTTGGAAATTTAAGAG+GGG | + | chr5.4:45844094-45844113 | None:intergenic | 25.0% |
| ! | TCCTAAACTTAAAAAAATCG+CGG | + | chr5.4:45841984-45842003 | None:intergenic | 25.0% |
| ! | TCTAAACTAAGCAATGATTA+GGG | + | chr5.4:45840987-45841006 | None:intergenic | 25.0% |
| !! | AAATATTTACTCTTTTGTCC+GGG | + | chr5.4:45841167-45841186 | None:intergenic | 25.0% |
| !! | AATGTATTAGAGGAGAATTT+TGG | + | chr5.4:45843999-45844018 | None:intergenic | 25.0% |
| !! | GATAGAGAAAATAAGCATTT+TGG | + | chr5.4:45842720-45842739 | None:intergenic | 25.0% |
| !! | TCAAATGGTTGTTCTAAATT+CGG | + | chr5.4:45842496-45842515 | None:intergenic | 25.0% |
| !! | TCACATATATATTGATTGGT+TGG | - | chr5.4:45843359-45843378 | MS.gene94068:intron | 25.0% |
| !! | TTCAAGTTAACTATTGTGAT+CGG | - | chr5.4:45841056-45841075 | MS.gene94068:intron | 25.0% |
| !! | TTCTAAAAACAGAAGCTATA+TGG | - | chr5.4:45840837-45840856 | MS.gene94068:CDS | 25.0% |
| !! | TTCTTTTTGTGATGTATGAA+TGG | - | chr5.4:45843738-45843757 | MS.gene94068:intron | 25.0% |
| !!! | AATCATTTTTTGTTTCCTAG+AGG | + | chr5.4:45844428-45844447 | None:intergenic | 25.0% |
| !!! | CTAAATAGACATTTTGATAG+AGG | - | chr5.4:45842600-45842619 | MS.gene94068:intron | 25.0% |
| !!! | CTATTTGGATTGGTTTTATA+AGG | + | chr5.4:45842898-45842917 | None:intergenic | 25.0% |
| !!! | CTTATATGATTTGTTTGCTT+TGG | - | chr5.4:45843785-45843804 | MS.gene94068:intron | 25.0% |
| !!! | GAAGATTTGTTATAGCTAAA+CGG | - | chr5.4:45842177-45842196 | MS.gene94068:intron | 25.0% |
| !!! | TCACTTATAACTTTTGAGTT+TGG | - | chr5.4:45842984-45843003 | MS.gene94068:intron | 25.0% |
| !!! | TGGTTTTATAAGGAATCATT+TGG | + | chr5.4:45842888-45842907 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTCTCCCAAATTA+GGG | - | chr5.4:45844019-45844038 | MS.gene94068:intron | 25.0% |
| !!! | TTTTTAAGTTCTCCCAAATT+AGG | - | chr5.4:45844018-45844037 | MS.gene94068:intron | 25.0% |
| !!! | TTTTTTAAGTTTAGGAGGTT+CGG | - | chr5.4:45841988-45842007 | MS.gene94068:intron | 25.0% |
| AAAGTTTACCAACAATGGAT+TGG | - | chr5.4:45841444-45841463 | MS.gene94068:intron | 30.0% | |
| AACATTATACCCTGAGAAAA+AGG | + | chr5.4:45841381-45841400 | None:intergenic | 30.0% | |
| ACGTGCATTCTTTAATTCAA+AGG | - | chr5.4:45842633-45842652 | MS.gene94068:intron | 30.0% | |
| ACTAGTGTGATCTATATAGA+AGG | - | chr5.4:45841196-45841215 | MS.gene94068:intron | 30.0% | |
| ACTTGACCATTACTGAAATT+CGG | + | chr5.4:45844287-45844306 | None:intergenic | 30.0% | |
| CATAATGAAAACGTTACACA+AGG | - | chr5.4:45843526-45843545 | MS.gene94068:intron | 30.0% | |
| CCAAACTGAAATCAAACTTA+AGG | + | chr5.4:45844118-45844137 | None:intergenic | 30.0% | |
| CTAGTGTGATCTATATAGAA+GGG | - | chr5.4:45841197-45841216 | MS.gene94068:intron | 30.0% | |
| GGTATGTTTGGAAATTTAAG+AGG | + | chr5.4:45844096-45844115 | None:intergenic | 30.0% | |
| GTATGGAGAAAAATTTGACT+AGG | - | chr5.4:45842061-45842080 | MS.gene94068:intron | 30.0% | |
| TACTATGTTGTAACTGATGA+AGG | - | chr5.4:45840932-45840951 | MS.gene94068:intron | 30.0% | |
| TACTTCACTAAATCGATAGT+TGG | - | chr5.4:45844324-45844343 | MS.gene94068:intron | 30.0% | |
| TCAAAAATTTGAACGATCCA+GGG | + | chr5.4:45841542-45841561 | None:intergenic | 30.0% | |
| TCAAGTTAACTATTGTGATC+GGG | - | chr5.4:45841057-45841076 | MS.gene94068:intron | 30.0% | |
| TCGCAAGACAATCTAAAAAT+GGG | - | chr5.4:45841877-45841896 | MS.gene94068:CDS | 30.0% | |
| TGCAAAGAAAGAAAAGATTG+AGG | - | chr5.4:45843684-45843703 | MS.gene94068:intron | 30.0% | |
| TGGAATTGATAAGCTTACTA+GGG | - | chr5.4:45842772-45842791 | MS.gene94068:intron | 30.0% | |
| TTAAAGAATGCACGTAAACT+TGG | + | chr5.4:45842628-45842647 | None:intergenic | 30.0% | |
| TTCAAAAATTTGAACGATCC+AGG | + | chr5.4:45841543-45841562 | None:intergenic | 30.0% | |
| TTGGAATTGATAAGCTTACT+AGG | - | chr5.4:45842771-45842790 | MS.gene94068:intron | 30.0% | |
| TTTGTTGAAGTTATATGGGT+TGG | - | chr5.4:45842422-45842441 | MS.gene94068:intron | 30.0% | |
| ! | AAATTCCAGTTTTCCAATCA+AGG | + | chr5.4:45843642-45843661 | None:intergenic | 30.0% |
| ! | ATCAAACTTAAGGGTATGTT+TGG | + | chr5.4:45844108-45844127 | None:intergenic | 30.0% |
| ! | ATTTCTCTTTTGTGAGTTTG+AGG | - | chr5.4:45842661-45842680 | MS.gene94068:intron | 30.0% |
| ! | ATTTGTTTGCTTTGGTTCAA+GGG | - | chr5.4:45843793-45843812 | MS.gene94068:intron | 30.0% |
| ! | CCTTAAGTTTGATTTCAGTT+TGG | - | chr5.4:45844115-45844134 | MS.gene94068:intron | 30.0% |
| ! | CTTGTGTAACGTTTTCATTA+TGG | + | chr5.4:45843528-45843547 | None:intergenic | 30.0% |
| ! | GGATATCATTAGTTTAGTGT+TGG | - | chr5.4:45841410-45841429 | MS.gene94068:intron | 30.0% |
| ! | GTTGTTCTAAATTCGGAAAT+AGG | + | chr5.4:45842489-45842508 | None:intergenic | 30.0% |
| ! | TAATTGATTAAGGGTGTGTT+TGG | + | chr5.4:45841803-45841822 | None:intergenic | 30.0% |
| ! | TACAATATTTTCTCCCAAAC+TGG | - | chr5.4:45842834-45842853 | MS.gene94068:intron | 30.0% |
| ! | TTTAAGTTCTCCCAAATTAG+GGG | - | chr5.4:45844020-45844039 | MS.gene94068:intron | 30.0% |
| ! | TTTCTCTTTTGTGAGTTTGA+GGG | - | chr5.4:45842662-45842681 | MS.gene94068:intron | 30.0% |
| !! | AAAATTGGTTTGAACCTCTT+TGG | - | chr5.4:45841906-45841925 | MS.gene94068:CDS | 30.0% |
| !! | AAATTGGTTTGAACCTCTTT+GGG | - | chr5.4:45841907-45841926 | MS.gene94068:CDS | 30.0% |
| !! | AATGCTTATTTTCTCTATCC+AGG | - | chr5.4:45842721-45842740 | MS.gene94068:intron | 30.0% |
| !! | ATGCTTATTTTCTCTATCCA+GGG | - | chr5.4:45842722-45842741 | MS.gene94068:intron | 30.0% |
| !!! | GCGATTTTTTTAAGTTTAGG+AGG | - | chr5.4:45841983-45842002 | MS.gene94068:intron | 30.0% |
| !!! | TCCGCGATTTTTTTAAGTTT+AGG | - | chr5.4:45841980-45841999 | MS.gene94068:intron | 30.0% |
| !!! | TTGAACTTTTAGGGTATGTT+TGG | - | chr5.4:45841558-45841577 | MS.gene94068:CDS | 30.0% |
| !!! | TTTTGGCTCAGAAAAATCTA+AGG | + | chr5.4:45842703-45842722 | None:intergenic | 30.0% |
| AACTTCAACAAACAAAAGGC+TGG | + | chr5.4:45842414-45842433 | None:intergenic | 35.0% | |
| AAGTGCTTATGAACCAGTTT+GGG | + | chr5.4:45842850-45842869 | None:intergenic | 35.0% | |
| AATATTTAAGCTAGCCCAGT+TGG | - | chr5.4:45841113-45841132 | MS.gene94068:intron | 35.0% | |
| AATCCTTTAAGCAAGTGGTT+AGG | - | chr5.4:45841487-45841506 | MS.gene94068:intron | 35.0% | |
| AGCTCATTGTAAACAGCTTA+TGG | - | chr5.4:45842796-45842815 | MS.gene94068:intron | 35.0% | |
| ATCCTTTAAGCAAGTGGTTA+GGG | - | chr5.4:45841488-45841507 | MS.gene94068:intron | 35.0% | |
| CAAGTTAACTATTGTGATCG+GGG | - | chr5.4:45841058-45841077 | MS.gene94068:intron | 35.0% | |
| CGATGATGAATTGTAGAAGA+AGG | - | chr5.4:45841253-45841272 | MS.gene94068:intron | 35.0% | |
| CGGAAATAGGACTAAATTGA+CGG | + | chr5.4:45842476-45842495 | None:intergenic | 35.0% | |
| CTCAGAAAAATCTAAGGATC+CGG | + | chr5.4:45842697-45842716 | None:intergenic | 35.0% | |
| GAAAACTGGAATTTCAGCAA+AGG | - | chr5.4:45843648-45843667 | MS.gene94068:intron | 35.0% | |
| GAAGATTTGTCATCGCTAAA+CGG | - | chr5.4:45842124-45842143 | MS.gene94068:intron | 35.0% | |
| GCTCATTGTAAACAGCTTAT+GGG | - | chr5.4:45842797-45842816 | MS.gene94068:intron | 35.0% | |
| GGAATTGATAAGCTTACTAG+GGG | - | chr5.4:45842773-45842792 | MS.gene94068:intron | 35.0% | |
| GGGTATAATGTTGTTGAAAC+AGG | - | chr5.4:45841389-45841408 | MS.gene94068:intron | 35.0% | |
| GTCGCAAGACAATCTAAAAA+TGG | - | chr5.4:45841876-45841895 | MS.gene94068:CDS | 35.0% | |
| TAAGTGCTTATGAACCAGTT+TGG | + | chr5.4:45842851-45842870 | None:intergenic | 35.0% | |
| TAGCGATGACAAATCTTCAT+CGG | + | chr5.4:45842122-45842141 | None:intergenic | 35.0% | |
| TCGTGTAATGAAGATACTCA+AGG | + | chr5.4:45844387-45844406 | None:intergenic | 35.0% | |
| TGAAGATCTAGACCAAGTTA+GGG | - | chr5.4:45841354-45841373 | MS.gene94068:intron | 35.0% | |
| TGGAATTTCAGCAAAGGATT+GGG | - | chr5.4:45843654-45843673 | MS.gene94068:intron | 35.0% | |
| TGGAGAAAAATTTGACTAGG+AGG | - | chr5.4:45842064-45842083 | MS.gene94068:intron | 35.0% | |
| TGTGAGAACACTCATACAAT+AGG | + | chr5.4:45843123-45843142 | None:intergenic | 35.0% | |
| TTAGGGTATGTTTGGATTGA+GGG | - | chr5.4:45841566-45841585 | MS.gene94068:CDS | 35.0% | |
| TTCCATCCGAATTTCAGTAA+TGG | - | chr5.4:45844278-45844297 | MS.gene94068:intron | 35.0% | |
| TTGAAGATCTAGACCAAGTT+AGG | - | chr5.4:45841353-45841372 | MS.gene94068:intron | 35.0% | |
| TTGTTATAGCTAAACGGTTG+TGG | - | chr5.4:45842183-45842202 | MS.gene94068:intron | 35.0% | |
| ! | ACACATTTAGTTCCTGAACT+TGG | + | chr5.4:45840872-45840891 | None:intergenic | 35.0% |
| ! | ATTTTCTTGAGTGTTTTCGC+GGG | - | chr5.4:45843093-45843112 | MS.gene94068:intron | 35.0% |
| ! | CATTTTCTTGAGTGTTTTCG+CGG | - | chr5.4:45843092-45843111 | MS.gene94068:intron | 35.0% |
| ! | GAAATTATGTGGCATGCTTT+TGG | - | chr5.4:45843578-45843597 | MS.gene94068:intron | 35.0% |
| ! | GATTTGTTTGCTTTGGTTCA+AGG | - | chr5.4:45843792-45843811 | MS.gene94068:intron | 35.0% |
| ! | TAGTTTCTGGATTGCAACTT+TGG | - | chr5.4:45844612-45844631 | MS.gene94068:CDS | 35.0% |
| ! | TTTAGGGTATGTTTGGATTG+AGG | - | chr5.4:45841565-45841584 | MS.gene94068:CDS | 35.0% |
| ! | TTTAGTTCCTGAACTTGGAA+TGG | + | chr5.4:45840867-45840886 | None:intergenic | 35.0% |
| ! | TTTCCTAGAGGAAGTATAAC+AGG | + | chr5.4:45844416-45844435 | None:intergenic | 35.0% |
| ! | TTTTCCTTGACATTGCTACA+GGG | - | chr5.4:45844508-45844527 | MS.gene94068:CDS | 35.0% |
| ! | TTTTTCCTTGACATTGCTAC+AGG | - | chr5.4:45844507-45844526 | MS.gene94068:CDS | 35.0% |
| !! | TGCTTATTTTCTCTATCCAG+GGG | - | chr5.4:45842723-45842742 | MS.gene94068:intron | 35.0% |
| AAACTAAAACGCAGAGACCA+AGG | + | chr5.4:45844598-45844617 | None:intergenic | 40.0% | |
| AACATGTGGGACACACAATA+TGG | + | chr5.4:45842097-45842116 | None:intergenic | 40.0% | |
| AACTAAAACGCAGAGACCAA+GGG | + | chr5.4:45844597-45844616 | None:intergenic | 40.0% | |
| AATAGCCCATAGAAGATGGT+AGG | - | chr5.4:45842913-45842932 | MS.gene94068:intron | 40.0% | |
| ACTGGAATCCTTTAAGCAAG+TGG | - | chr5.4:45841482-45841501 | MS.gene94068:intron | 40.0% | |
| ACTTGGTCTAGATCTTCAAC+AGG | + | chr5.4:45841352-45841371 | None:intergenic | 40.0% | |
| AGACCTGTTATACTTCCTCT+AGG | - | chr5.4:45844410-45844429 | MS.gene94068:intron | 40.0% | |
| AGCGATGACAAATCTTCATC+GGG | + | chr5.4:45842121-45842140 | None:intergenic | 40.0% | |
| AGGAACTAAATGTGTGTCTG+AGG | - | chr5.4:45840877-45840896 | MS.gene94068:CDS | 40.0% | |
| AGTTTGAGGGATTAGATTGC+CGG | - | chr5.4:45842675-45842694 | MS.gene94068:intron | 40.0% | |
| ATCCAACTCCTTAACCAACT+GGG | + | chr5.4:45841130-45841149 | None:intergenic | 40.0% | |
| ATTTAAGAGGGGAAGAATCG+AGG | + | chr5.4:45844083-45844102 | None:intergenic | 40.0% | |
| CATGTGAACAGCAACAAGTA+AGG | + | chr5.4:45841328-45841347 | None:intergenic | 40.0% | |
| CTGGAATTTCAGCAAAGGAT+TGG | - | chr5.4:45843653-45843672 | MS.gene94068:intron | 40.0% | |
| CTTGGTCTAGATCTTCAACA+GGG | + | chr5.4:45841351-45841370 | None:intergenic | 40.0% | |
| GACCATTACTGAAATTCGGA+TGG | + | chr5.4:45844283-45844302 | None:intergenic | 40.0% | |
| GTATTTGACCATGTGATGCT+CGG | - | chr5.4:45844144-45844163 | MS.gene94068:intron | 40.0% | |
| GTTAAGGAGTTGGATGTAGT+GGG | - | chr5.4:45841135-45841154 | MS.gene94068:intron | 40.0% | |
| TAACTATTGTGATCGGGGTT+CGG | - | chr5.4:45841063-45841082 | MS.gene94068:intron | 40.0% | |
| TACCGAGAGTGGAAATTATG+TGG | - | chr5.4:45843567-45843586 | MS.gene94068:intron | 40.0% | |
| TATGTTTGGATTGAGGGTCT+GGG | - | chr5.4:45841572-45841591 | MS.gene94068:CDS | 40.0% | |
| TCACACCTACCATCTTCTAT+GGG | + | chr5.4:45842921-45842940 | None:intergenic | 40.0% | |
| TCCAAATAGCCCATAGAAGA+TGG | - | chr5.4:45842909-45842928 | MS.gene94068:intron | 40.0% | |
| TCCTTTAAGCAAGTGGTTAG+GGG | - | chr5.4:45841489-45841508 | MS.gene94068:intron | 40.0% | |
| TGAAGAGTGGATAAGCTTCT+TGG | - | chr5.4:45842752-45842771 | MS.gene94068:intron | 40.0% | |
| TGACACTTACACTACCTTCT+GGG | + | chr5.4:45843618-45843637 | None:intergenic | 40.0% | |
| TGAGAAAAAGGTCCCTAACT+TGG | + | chr5.4:45841369-45841388 | None:intergenic | 40.0% | |
| TGCCACATAATTTCCACTCT+CGG | + | chr5.4:45843572-45843591 | None:intergenic | 40.0% | |
| TGGTTTAGTATCATGTCCCT+TGG | - | chr5.4:45844578-45844597 | MS.gene94068:CDS | 40.0% | |
| TGTGTTTGGATGAAGGGTTT+GGG | + | chr5.4:45841789-45841808 | None:intergenic | 40.0% | |
| TTCACACCTACCATCTTCTA+TGG | + | chr5.4:45842922-45842941 | None:intergenic | 40.0% | |
| TTTAAGAGGGGAAGAATCGA+GGG | + | chr5.4:45844082-45844101 | None:intergenic | 40.0% | |
| TTTCTCCATACACAAGAGTC+CGG | + | chr5.4:45842052-45842071 | None:intergenic | 40.0% | |
| ! | AAGTTAGGGACCTTTTTCTC+AGG | - | chr5.4:45841368-45841387 | MS.gene94068:intron | 40.0% |
| ! | ACCATCTTCTATGGGCTATT+TGG | + | chr5.4:45842913-45842932 | None:intergenic | 40.0% |
| ! | AGTTAGGGACCTTTTTCTCA+GGG | - | chr5.4:45841369-45841388 | MS.gene94068:intron | 40.0% |
| ! | CTTCTATGGGCTATTTGGAT+TGG | + | chr5.4:45842908-45842927 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATGAA+GGG | + | chr5.4:45841795-45841814 | None:intergenic | 40.0% |
| ! | TGGTGAACGTTGTTTCCAAA+AGG | + | chr5.4:45843508-45843527 | None:intergenic | 40.0% |
| ! | TTAAGGGTGTGTTTGGATGA+AGG | + | chr5.4:45841796-45841815 | None:intergenic | 40.0% |
| ! | TTATGTGGCATGCTTTTGGA+TGG | - | chr5.4:45843582-45843601 | MS.gene94068:intron | 40.0% |
| ! | TTGCAGGTAACATCTCCTTT+TGG | - | chr5.4:45843490-45843509 | MS.gene94068:intron | 40.0% |
| !! | AATGGATTGGTCCAGGTAAT+AGG | - | chr5.4:45841457-45841476 | MS.gene94068:intron | 40.0% |
| !! | AGGGTGTTGAACTTGAAATC+AGG | - | chr5.4:45843812-45843831 | MS.gene94068:intron | 40.0% |
| !! | ATGGATTGGTCCAGGTAATA+GGG | - | chr5.4:45841458-45841477 | MS.gene94068:intron | 40.0% |
| AAACAAATGCTCGAGTCGCT+TGG | - | chr5.4:45844558-45844577 | MS.gene94068:CDS | 45.0% | |
| AAGTGGTTAGGGGTTCAATC+TGG | - | chr5.4:45841499-45841518 | MS.gene94068:intron | 45.0% | |
| AATCTTCATCGGGGAACATG+TGG | + | chr5.4:45842111-45842130 | None:intergenic | 45.0% | |
| ACCCCTAACCACTTGCTTAA+AGG | + | chr5.4:45841493-45841512 | None:intergenic | 45.0% | |
| ATCCCGAAGTTGTGCATCAA+CGG | + | chr5.4:45843026-45843045 | None:intergenic | 45.0% | |
| ATCTTCATCGGGGAACATGT+GGG | + | chr5.4:45842110-45842129 | None:intergenic | 45.0% | |
| ATGGAAGGAAAACACCCAGA+AGG | - | chr5.4:45843601-45843620 | MS.gene94068:intron | 45.0% | |
| CATCCAACTCCTTAACCAAC+TGG | + | chr5.4:45841131-45841150 | None:intergenic | 45.0% | |
| CTGACACTTACACTACCTTC+TGG | + | chr5.4:45843619-45843638 | None:intergenic | 45.0% | |
| CTTGAAATCAGGAAGCTCGA+AGG | - | chr5.4:45843823-45843842 | MS.gene94068:intron | 45.0% | |
| GATTAGGGAACATACCTTCG+CGG | + | chr5.4:45840972-45840991 | None:intergenic | 45.0% | |
| GATTTGTCATCGCTAAACGG+CGG | - | chr5.4:45842127-45842146 | MS.gene94068:intron | 45.0% | |
| GCATTTACAACTACCGAGAG+TGG | - | chr5.4:45843556-45843575 | MS.gene94068:intron | 45.0% | |
| GCGATGACAAATCTTCATCG+GGG | + | chr5.4:45842120-45842139 | None:intergenic | 45.0% | |
| GGTTAAGGAGTTGGATGTAG+TGG | - | chr5.4:45841134-45841153 | MS.gene94068:intron | 45.0% | |
| GTATGTTTGGATTGAGGGTC+TGG | - | chr5.4:45841571-45841590 | MS.gene94068:CDS | 45.0% | |
| GTCAGCCTTGATTGGAAAAC+TGG | - | chr5.4:45843634-45843653 | MS.gene94068:intron | 45.0% | |
| GTGTAAGTGTCAGCCTTGAT+TGG | - | chr5.4:45843626-45843645 | MS.gene94068:intron | 45.0% | |
| GTGTGTTTGGATGAAGGGTT+TGG | + | chr5.4:45841790-45841809 | None:intergenic | 45.0% | |
| TAAGCTAGCCCAGTTGGTTA+AGG | - | chr5.4:45841119-45841138 | MS.gene94068:intron | 45.0% | |
| TACCTGGACCAATCCATTGT+TGG | + | chr5.4:45841455-45841474 | None:intergenic | 45.0% | |
| TCTTCACACTATTTCCGCGA+AGG | - | chr5.4:45840955-45840974 | MS.gene94068:intron | 45.0% | |
| TGGTTGACCATTCCAAGTTC+AGG | - | chr5.4:45840857-45840876 | MS.gene94068:CDS | 45.0% | |
| TGTCCGTTGATGCACAACTT+CGG | - | chr5.4:45843020-45843039 | MS.gene94068:intron | 45.0% | |
| TTTGGATGAAGGGTTTGGGA+GGG | + | chr5.4:45841785-45841804 | None:intergenic | 45.0% | |
| ! | TTTGAACCTCTTTGGGCTAG+TGG | - | chr5.4:45841914-45841933 | MS.gene94068:CDS | 45.0% |
| !! | AATCTGGTGGTGTTGTTGCT+AGG | - | chr5.4:45841515-45841534 | MS.gene94068:intron | 45.0% |
| !! | TACCAACAATGGATTGGTCC+AGG | - | chr5.4:45841450-45841469 | MS.gene94068:intron | 45.0% |
| !! | TGGATTGGTCCAGGTAATAG+GGG | - | chr5.4:45841459-45841478 | MS.gene94068:intron | 45.0% |
| !!! | GGTCTCTGCGTTTTAGTTTC+TGG | - | chr5.4:45844599-45844618 | MS.gene94068:CDS | 45.0% |
| !! | ATTATAATTATAATTGATTA+AGG | + | chr5.4:45841813-45841832 | None:intergenic | 5.0% |
| !! | TTATAATTATAATTGATTAA+GGG | + | chr5.4:45841812-45841831 | None:intergenic | 5.0% |
| AGCCCAGTTGGTTAAGGAGT+TGG | - | chr5.4:45841125-45841144 | MS.gene94068:intron | 50.0% | |
| ATCTCGAACCGAGCATCACA+TGG | + | chr5.4:45844155-45844174 | None:intergenic | 50.0% | |
| CAGGAAGCTCGAAGGAATAG+TGG | - | chr5.4:45843831-45843850 | MS.gene94068:intron | 50.0% | |
| CTACAGGGAAGCAACGATGA+GGG | - | chr5.4:45844523-45844542 | MS.gene94068:CDS | 50.0% | |
| GATTCCAGTCCCCTATTACC+TGG | + | chr5.4:45841471-45841490 | None:intergenic | 50.0% | |
| GCTTCCCTGTAGCAATGTCA+AGG | + | chr5.4:45844515-45844534 | None:intergenic | 50.0% | |
| GGTGGAACCACACAATAGTG+CGG | + | chr5.4:45842020-45842039 | None:intergenic | 50.0% | |
| GTCCGTTGATGCACAACTTC+GGG | - | chr5.4:45843021-45843040 | MS.gene94068:intron | 50.0% | |
| GTGGAACCACACAATAGTGC+GGG | + | chr5.4:45842019-45842038 | None:intergenic | 50.0% | |
| GTTGATGCACAACTTCGGGA+TGG | - | chr5.4:45843025-45843044 | MS.gene94068:intron | 50.0% | |
| GTTTGGATGAAGGGTTTGGG+AGG | + | chr5.4:45841786-45841805 | None:intergenic | 50.0% | |
| TCGATCCGGACTCTTGTGTA+TGG | - | chr5.4:45842044-45842063 | MS.gene94068:intron | 50.0% | |
| TGGTTAGGGGTTCAATCTGG+TGG | - | chr5.4:45841502-45841521 | MS.gene94068:intron | 50.0% | |
| TTAGCACCACTAGCCCAAAG+AGG | + | chr5.4:45841923-45841942 | None:intergenic | 50.0% | |
| TTGGATGAAGGGTTTGGGAG+GGG | + | chr5.4:45841784-45841803 | None:intergenic | 50.0% | |
| TTTGGATTGAGGGTCTGGGA+GGG | - | chr5.4:45841576-45841595 | MS.gene94068:CDS | 50.0% | |
| ! | GCTAGTGGTGCTAAACTTGG+GGG | - | chr5.4:45841929-45841948 | MS.gene94068:CDS | 50.0% |
| ! | GGCTAGTGGTGCTAAACTTG+GGG | - | chr5.4:45841928-45841947 | MS.gene94068:CDS | 50.0% |
| ! | GGGAAGAATCGAGGGTTTTG+AGG | + | chr5.4:45844074-45844093 | None:intergenic | 50.0% |
| ! | GGGCTAGTGGTGCTAAACTT+GGG | - | chr5.4:45841927-45841946 | MS.gene94068:CDS | 50.0% |
| ! | GTGGCATGCTTTTGGATGGA+AGG | - | chr5.4:45843586-45843605 | MS.gene94068:intron | 50.0% |
| ! | TGTGATGCTCGGTTCGAGAT+TGG | - | chr5.4:45844155-45844174 | MS.gene94068:intron | 50.0% |
| !! | GGATGTAGTGGGTTCAAACC+CGG | - | chr5.4:45841146-45841165 | MS.gene94068:intron | 50.0% |
| !! | TGGGCTAGTGGTGCTAAACT+TGG | - | chr5.4:45841926-45841945 | MS.gene94068:CDS | 50.0% |
| ACAAGAGTCCGGATCGACAG+TGG | + | chr5.4:45842041-45842060 | None:intergenic | 55.0% | |
| ATGAAGGGTTTGGGAGGGGA+AGG | + | chr5.4:45841780-45841799 | None:intergenic | 55.0% | |
| CCACTCTTCATAAGCTCCCC+TGG | + | chr5.4:45842742-45842761 | None:intergenic | 55.0% | |
| CCAGGGGAGCTTATGAAGAG+TGG | - | chr5.4:45842739-45842758 | MS.gene94068:intron | 55.0% | |
| GCTACAGGGAAGCAACGATG+AGG | - | chr5.4:45844522-45844541 | MS.gene94068:CDS | 55.0% | |
| GCTGAACCCGCACTATTGTG+TGG | - | chr5.4:45842010-45842029 | MS.gene94068:intron | 55.0% | |
| GTTTGGATTGAGGGTCTGGG+AGG | - | chr5.4:45841575-45841594 | MS.gene94068:CDS | 55.0% | |
| TGAAGGGTTTGGGAGGGGAA+GGG | + | chr5.4:45841779-45841798 | None:intergenic | 55.0% | |
| TGGTCCAGGTAATAGGGGAC+TGG | - | chr5.4:45841464-45841483 | MS.gene94068:intron | 55.0% | |
| TGGTTCCACCACTGTCGATC+CGG | - | chr5.4:45842030-45842049 | MS.gene94068:intron | 55.0% | |
| TTGGATTGAGGGTCTGGGAG+GGG | - | chr5.4:45841577-45841596 | MS.gene94068:CDS | 55.0% | |
| TTGTCATCGCTAAACGGCGG+TGG | - | chr5.4:45842130-45842149 | MS.gene94068:intron | 55.0% | |
| !! | TGGTGTTGTTGCTAGGACCC+TGG | - | chr5.4:45841522-45841541 | MS.gene94068:intron | 55.0% |
| AGAGTCCGGATCGACAGTGG+TGG | + | chr5.4:45842038-45842057 | None:intergenic | 60.0% | |
| ATTGAGGGTCTGGGAGGGGA+AGG | - | chr5.4:45841581-45841600 | MS.gene94068:CDS | 60.0% | |
| TTGAGGGTCTGGGAGGGGAA+GGG | - | chr5.4:45841582-45841601 | MS.gene94068:CDS | 60.0% | |
| AGGGTTTGGGAGGGGAAGGG+AGG | + | chr5.4:45841776-45841795 | None:intergenic | 65.0% | |
| GGGTTTGGGAGGGGAAGGGA+GGG | + | chr5.4:45841775-45841794 | None:intergenic | 65.0% | |
| TGGGAGGGGAAGGGAGGGAA+GGG | + | chr5.4:45841770-45841789 | None:intergenic | 65.0% | |
| TTGGGAGGGGAAGGGAGGGA+AGG | + | chr5.4:45841771-45841790 | None:intergenic | 65.0% | |
| AGGGTCTGGGAGGGGAAGGG+AGG | - | chr5.4:45841585-45841604 | MS.gene94068:CDS | 70.0% | |
| GGGTCTGGGAGGGGAAGGGA+GGG | - | chr5.4:45841586-45841605 | MS.gene94068:CDS | 70.0% | |
| GGTCTGGGAGGGGAAGGGAG+GGG | - | chr5.4:45841587-45841606 | MS.gene94068:CDS | 70.0% | |
| TGGGAGGGGAAGGGAGGGGA+GGG | - | chr5.4:45841591-45841610 | MS.gene94068:CDS | 70.0% | |
| CTGGGAGGGGAAGGGAGGGG+AGG | - | chr5.4:45841590-45841609 | MS.gene94068:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 45840773 | 45844673 | 45840773 | ID=MS.gene94068 |
| chr5.4 | mRNA | 45840773 | 45844673 | 45840773 | ID=MS.gene94068.t1;Parent=MS.gene94068 |
| chr5.4 | exon | 45844470 | 45844673 | 45844470 | ID=MS.gene94068.t1.exon1;Parent=MS.gene94068.t1 |
| chr5.4 | CDS | 45844470 | 45844673 | 45844470 | ID=cds.MS.gene94068.t1;Parent=MS.gene94068.t1 |
| chr5.4 | exon | 45841741 | 45841950 | 45841741 | ID=MS.gene94068.t1.exon2;Parent=MS.gene94068.t1 |
| chr5.4 | CDS | 45841741 | 45841950 | 45841741 | ID=cds.MS.gene94068.t1;Parent=MS.gene94068.t1 |
| chr5.4 | exon | 45841556 | 45841632 | 45841556 | ID=MS.gene94068.t1.exon3;Parent=MS.gene94068.t1 |
| chr5.4 | CDS | 45841556 | 45841632 | 45841556 | ID=cds.MS.gene94068.t1;Parent=MS.gene94068.t1 |
| chr5.4 | exon | 45840773 | 45840917 | 45840773 | ID=MS.gene94068.t1.exon4;Parent=MS.gene94068.t1 |
| chr5.4 | CDS | 45840773 | 45840917 | 45840773 | ID=cds.MS.gene94068.t1;Parent=MS.gene94068.t1 |
| Gene Sequence |
| Protein sequence |
