AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94276

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94276.t1 MTR_3g009190 95.016 321 16 0 1 321 17 337 0.0 617
MS.gene94276.t1 MTR_3g009190 95.597 318 14 0 4 321 2 319 0.0 615
MS.gene94276.t1 MTR_6g453040 93.939 297 18 0 25 321 1 297 0.0 569
MS.gene94276.t1 MTR_3g091070 88.552 297 16 1 25 321 1 279 0.0 532
MS.gene94276.t1 MTR_6g453040 89.437 284 26 1 4 287 2 281 0.0 508
MS.gene94276.t1 MTR_3g009190 93.359 256 17 0 66 321 63 318 6.94e-171 479
MS.gene94276.t1 MTR_6g453040 93.361 241 16 0 4 244 2 242 1.18e-163 456
MS.gene94276.t1 MTR_3g009200 79.775 178 24 3 104 278 2 170 3.25e-95 280
MS.gene94276.t1 MTR_6g453030 88.312 77 9 0 94 170 1 77 1.90e-42 141
MS.gene94276.t1 MTR_3g077410 31.579 266 163 8 59 320 32 282 3.55e-26 106
MS.gene94276.t1 MTR_8g099995 31.381 239 147 6 67 300 38 264 8.04e-26 105
MS.gene94276.t1 MTR_4g105310 29.918 244 152 6 62 300 46 275 5.33e-24 100
MS.gene94276.t1 MTR_4g105310 31.140 228 138 7 61 283 45 258 2.36e-23 97.4
MS.gene94276.t1 MTR_7g099850 30.769 221 137 5 67 283 37 245 6.00e-22 94.7
MS.gene94276.t1 MTR_8g098415 31.727 249 150 6 67 308 32 267 3.18e-21 92.4
MS.gene94276.t1 MTR_8g098415 32.129 249 149 6 67 308 32 267 3.98e-21 92.0
MS.gene94276.t1 MTR_1g068970 29.614 233 147 6 67 295 37 256 4.87e-20 89.4
MS.gene94276.t1 MTR_1g100305 30.588 255 145 9 67 308 32 267 5.03e-19 86.3
MS.gene94276.t1 MTR_6g041980 29.648 199 125 6 15 207 14 203 1.07e-18 84.7
MS.gene94276.t1 MTR_1g100395 28.916 249 157 6 67 308 32 267 1.11e-18 85.5
MS.gene94276.t1 MTR_6g041980 29.648 199 125 6 15 207 14 203 6.02e-18 83.6
MS.gene94276.t1 MTR_1g100335 30.493 223 138 5 67 285 32 241 1.22e-17 81.6
MS.gene94276.t1 MTR_1g100335 30.493 223 138 5 67 285 32 241 1.25e-17 81.6
MS.gene94276.t1 MTR_1g100335 28.514 249 158 6 67 308 32 267 2.04e-17 81.6
MS.gene94276.t1 MTR_1g100315 29.778 225 141 5 67 287 32 243 2.08e-17 81.6
MS.gene94276.t1 MTR_6g053550 30.802 237 130 9 66 289 39 254 1.79e-16 79.3
MS.gene94276.t1 MTR_6g081020 29.924 264 155 11 38 289 34 279 2.27e-16 79.3
MS.gene94276.t1 MTR_8g098415 31.343 201 118 6 115 308 23 210 5.69e-16 76.6
MS.gene94276.t1 MTR_8g098415 32.143 196 118 4 67 258 32 216 1.05e-15 75.5
MS.gene94276.t1 MTR_6g053600 29.644 253 139 10 67 301 26 257 3.47e-15 75.1
MS.gene94276.t1 MTR_1g068970 28.421 190 119 6 112 297 15 191 1.40e-13 70.1
MS.gene94276.t1 MTR_2g079710 30.000 240 140 7 64 284 86 316 2.26e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94276.t1 AT5G04070 56.190 315 138 0 7 321 1 315 1.42e-115 338
MS.gene94276.t1 AT5G15940 54.259 317 144 1 6 321 1 317 2.03e-110 323
MS.gene94276.t1 AT5G15940 54.259 317 144 1 6 321 1 317 1.82e-109 323
MS.gene94276.t1 AT5G15940 54.259 317 144 1 6 321 1 317 1.82e-109 323
MS.gene94276.t1 AT5G15940 54.430 316 143 1 7 321 1 316 5.76e-109 322
MS.gene94276.t1 AT2G37540 34.211 228 133 6 67 290 36 250 2.48e-26 105
MS.gene94276.t1 AT2G37540 34.389 221 128 6 67 283 36 243 1.03e-25 105
MS.gene94276.t1 AT4G24050 30.962 239 148 5 67 300 37 263 1.28e-24 100
MS.gene94276.t1 AT4G24050 30.962 239 148 5 67 300 37 263 3.60e-24 100
MS.gene94276.t1 AT4G23430 32.000 250 149 6 67 308 32 268 1.06e-23 99.4
MS.gene94276.t1 AT1G64590 29.536 237 152 4 68 300 38 263 2.73e-23 98.6
MS.gene94276.t1 AT4G23430 31.600 250 148 6 67 308 32 266 8.13e-23 97.1
MS.gene94276.t1 AT5G50130 29.864 221 139 5 67 283 39 247 3.69e-22 94.0
MS.gene94276.t1 AT5G50130 28.692 237 153 5 68 300 40 264 6.00e-22 94.7
MS.gene94276.t1 AT5G50130 30.317 221 137 6 67 283 39 246 7.22e-22 93.2
MS.gene94276.t1 AT5G50130 28.692 237 153 5 68 300 40 264 7.42e-22 94.7
MS.gene94276.t1 AT5G50130 29.114 237 151 6 68 300 40 263 1.22e-21 94.0
MS.gene94276.t1 AT5G50130 29.680 219 138 5 69 283 8 214 1.99e-21 92.8
MS.gene94276.t1 AT4G23420 31.390 223 128 7 67 281 32 237 2.21e-21 92.0
MS.gene94276.t1 AT5G50130 28.390 236 153 5 69 300 8 231 2.53e-21 92.8
MS.gene94276.t1 AT4G09750 29.231 260 148 9 67 320 46 275 3.74e-21 92.4
MS.gene94276.t1 AT4G23420 31.390 223 128 7 67 281 32 237 3.81e-21 91.3
MS.gene94276.t1 AT5G50130 30.137 219 136 6 69 283 8 213 4.63e-21 91.7
MS.gene94276.t1 AT5G50130 28.814 236 151 6 69 300 8 230 5.01e-21 91.7
MS.gene94276.t1 AT4G23420 31.390 223 128 7 67 281 32 237 7.05e-21 91.7
MS.gene94276.t1 AT4G23420 31.390 223 128 7 67 281 32 237 7.05e-21 91.7
MS.gene94276.t1 AT4G23420 31.390 223 128 7 67 281 49 254 7.26e-21 91.7
MS.gene94276.t1 AT5G02540 32.301 226 136 6 74 295 43 255 1.96e-19 87.8
MS.gene94276.t1 AT4G11410 30.769 221 136 5 67 283 32 239 1.10e-18 84.3
MS.gene94276.t1 AT4G11410 30.631 222 137 5 66 283 31 239 5.12e-18 83.6
MS.gene94276.t1 AT4G23430 29.675 246 150 6 67 308 32 258 1.19e-17 82.4
MS.gene94276.t1 AT4G23430 29.268 246 149 6 67 308 32 256 1.09e-16 79.7
MS.gene94276.t1 AT5G53090 31.518 257 149 11 37 286 33 269 8.03e-16 77.8
MS.gene94276.t1 AT4G27760 30.859 256 149 13 40 285 32 269 2.00e-15 76.6
MS.gene94276.t1 AT5G53100 32.189 233 133 9 63 286 43 259 2.77e-14 73.2
MS.gene94276.t1 AT5G54190 29.439 214 125 6 64 258 92 298 3.06e-14 73.2
MS.gene94276.t1 AT5G61830 26.210 248 137 6 66 279 38 273 4.55e-14 72.0
MS.gene94276.t1 AT5G61830 26.210 248 137 6 66 279 38 273 4.55e-14 72.0
MS.gene94276.t1 AT1G03630 27.615 239 146 7 64 284 89 318 5.19e-12 66.6
MS.gene94276.t1 AT1G03630 27.615 239 146 7 64 284 87 316 5.36e-12 66.6
MS.gene94276.t1 AT4G27440 27.917 240 145 7 64 284 88 318 3.68e-11 63.9
MS.gene94276.t1 AT4G27440 27.917 240 145 7 64 284 88 318 3.68e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCATTACCAACTGTTTA+AGG 0.080814 6.1:-29141837 MS.gene94276:CDS
TGATGTTACATTAACAATTT+TGG 0.129013 6.1:+29139226 None:intergenic
AAAGGATATGTTGTTGTTAT+TGG 0.179954 6.1:-29141602 MS.gene94276:intron
AGAAGCATGGTCATAATAAA+TGG 0.181349 6.1:+29139281 None:intergenic
TTCCCTGCAGCAATGGCTTT+TGG 0.194468 6.1:-29139844 MS.gene94276:CDS
ATGACGCAAACGGGCTTATT+AGG 0.251000 6.1:+29141758 None:intergenic
TAGACCATAACAAAGATTAA+AGG 0.274006 6.1:-29139942 MS.gene94276:CDS
GGGAAAGATTAATTTGATAA+AGG 0.295568 6.1:-29141939 MS.gene94276:CDS
CCAACCTTTAATCTTTGTTA+TGG 0.305478 6.1:+29139938 None:intergenic
GTTGATGAGGGAACAACATT+TGG 0.330001 6.1:-29139027 MS.gene94276:CDS
ACTGAAGCGTCTACGCCTAT+TGG 0.358663 6.1:-29137959 MS.gene94276:CDS
GCCACCCAAGACAGGCTTGC+TGG 0.372458 6.1:+29137991 None:intergenic
AGTAAGAGCGGCATCAATAA+TGG 0.377243 6.1:+29137912 None:intergenic
AGGAGATGTTGCAAGTATTC+CGG 0.389746 6.1:+29139779 None:intergenic
TGCATCAGTGTTGCAGATCC+TGG 0.392661 6.1:-29138045 MS.gene94276:intron
GTGTAGGCAACATCTGGCTT+GGG 0.397099 6.1:-29141653 MS.gene94276:intron
TCTTGAGAATGGCGTTGCTT+TGG 0.397354 6.1:-29141877 MS.gene94276:CDS
CTCGATTCAATTCTTGAGAA+TGG 0.397675 6.1:-29141888 MS.gene94276:CDS
TGTGTAGGCAACATCTGGCT+TGG 0.405184 6.1:-29141654 MS.gene94276:intron
TACTCATAGATCTGAGCATA+TGG 0.415666 6.1:+29138976 None:intergenic
TTGATGAGGGAACAACATTT+GGG 0.432599 6.1:-29139026 MS.gene94276:CDS
TTCTTCAGTTACTAATATGC+AGG 0.447497 6.1:-29139049 MS.gene94276:intron
AATCCAAAAGCCATTGCTGC+AGG 0.464036 6.1:+29139841 None:intergenic
ATGATCGGCACAAATTATAT+CGG 0.464816 6.1:-29139305 MS.gene94276:CDS
ACACCGGTGATGACGCAAAC+GGG 0.472541 6.1:+29141749 None:intergenic
CGCACTCAGAGGATTCCAAT+AGG 0.477071 6.1:+29137944 None:intergenic
GAAGCATGGTCATAATAAAT+GGG 0.477779 6.1:+29139282 None:intergenic
AAGTTCCAGCAAGCCTGTCT+TGG 0.478894 6.1:-29137996 MS.gene94276:CDS
ATGTTTGTTTGTACAACTCC+AGG 0.484002 6.1:+29138027 None:intergenic
AGTTCCAGCAAGCCTGTCTT+GGG 0.486423 6.1:-29137995 MS.gene94276:CDS
CACCGACAGCTTTGCCAGAT+GGG 0.488097 6.1:-29138831 MS.gene94276:CDS
TCTGATGAGATTTACCCATC+TGG 0.490381 6.1:+29138817 None:intergenic
ATGAGAAAATGCAACAGAAA+AGG 0.493406 6.1:+29141853 None:intergenic
GCATGCAAGCTTTCTAAGAA+AGG 0.493952 6.1:-29141620 MS.gene94276:CDS
AACGGGCTTATTAGGAAAAG+TGG 0.495799 6.1:+29141766 None:intergenic
ACTCTTTCTCCCAGGATGAT+CGG 0.513630 6.1:-29139320 MS.gene94276:intron
GGATTCCGATTTGCACTGCT+CGG 0.516338 6.1:-29139823 MS.gene94276:CDS
TACTAATATGCAGGTTGATG+AGG 0.517745 6.1:-29139040 MS.gene94276:CDS
TACACCGGTGATGACGCAAA+CGG 0.519389 6.1:+29141748 None:intergenic
AAGTGGAAGGTGAAGACCTT+GGG 0.521811 6.1:+29141783 None:intergenic
CAAAGAATGCCACCCAAGAC+AGG 0.524956 6.1:+29137983 None:intergenic
TAGCCCTCAGCTGTGACTCT+AGG 0.533229 6.1:+29139759 None:intergenic
GGTCAGCCTGAAAAGCTTTG+AGG 0.537092 6.1:+29139901 None:intergenic
CCACCGACAGCTTTGCCAGA+TGG 0.542711 6.1:-29138832 MS.gene94276:CDS
TTGTACCGAGCAGTGCAAAT+CGG 0.544351 6.1:+29139818 None:intergenic
AGAGCGAATCCTTAAACAGT+TGG 0.549305 6.1:+29141828 None:intergenic
TATTGGAATCCTCTGAGTGC+GGG 0.558043 6.1:-29137942 MS.gene94276:CDS
AAGCCCGTTTGCGTCATCAC+CGG 0.558096 6.1:-29141752 MS.gene94276:CDS
ACAGGACTGCTTTCAAGAAG+TGG 0.566270 6.1:+29139254 None:intergenic
ACTAATATGCAGGTTGATGA+GGG 0.578265 6.1:-29139039 MS.gene94276:CDS
CAAATACTAATAAACAATGC+CGG 0.578986 6.1:-29139798 MS.gene94276:CDS
TACCCATCTGGCAAAGCTGT+CGG 0.582388 6.1:+29138829 None:intergenic
TCAGTACTTCCCTGCAGCAA+TGG 0.583822 6.1:-29139851 MS.gene94276:CDS
CAGCCTGAAAAGCTTTGAGG+TGG 0.586814 6.1:+29139904 None:intergenic
ATCCAAAAGCCATTGCTGCA+GGG 0.600315 6.1:+29139842 None:intergenic
TCTCCTAGAGTCACAGCTGA+GGG 0.603093 6.1:-29139762 MS.gene94276:CDS
ACATCATTTACTCACCGAGC+TGG 0.604721 6.1:-29139209 MS.gene94276:intron
TCCAGCAAGCCTGTCTTGGG+TGG 0.609392 6.1:-29137992 MS.gene94276:CDS
CCATAACAAAGATTAAAGGT+TGG 0.609730 6.1:-29139938 MS.gene94276:CDS
ATCTCCTAGAGTCACAGCTG+AGG 0.610478 6.1:-29139763 MS.gene94276:CDS
TAATTGACTCAACCGACGAA+AGG 0.612541 6.1:+29139880 None:intergenic
CCATCTGGCAAAGCTGTCGG+TGG 0.613785 6.1:+29138832 None:intergenic
ATCAGAGCAATTGTTGTCAG+AGG 0.617021 6.1:-29140050 MS.gene94276:intron
AAGAAGTGGTAATAGAAGCA+TGG 0.625943 6.1:+29139268 None:intergenic
ACAAAATCATATCCTACCCA+AGG 0.631603 6.1:-29141799 MS.gene94276:CDS
CTATTGGAATCCTCTGAGTG+CGG 0.632369 6.1:-29137943 MS.gene94276:CDS
AAAGTGGAAGGTGAAGACCT+TGG 0.635841 6.1:+29141782 None:intergenic
AGCCTGAAAAGCTTTGAGGT+GGG 0.643587 6.1:+29139905 None:intergenic
AAATGATTATCCTACCAGCT+CGG 0.644742 6.1:+29139195 None:intergenic
ACTCACAGGCGGAGTAAGAG+CGG 0.648573 6.1:+29137900 None:intergenic
TCAAGAATTGAATCGAGCAG+AGG 0.649298 6.1:+29141894 None:intergenic
GGAAGGTGAAGACCTTGGGT+AGG 0.649927 6.1:+29141787 None:intergenic
GGAATCGTTCCCGCACTCAG+AGG 0.677353 6.1:+29137933 None:intergenic
GGCTTATTAGGAAAAGTGGA+AGG 0.680051 6.1:+29141770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTTTATTATATTTC+TGG - chr6.1:29141727-29141746 MS.gene94276:intron 10.0%
!! AAAATTTCCCTAATTATTAT+TGG - chr6.1:29139217-29139236 MS.gene94276:CDS 15.0%
!! AAATTTCCCTAATTATTATT+GGG - chr6.1:29139218-29139237 MS.gene94276:CDS 15.0%
!! CTTAATCATAATTATCTTAA+CGG - chr6.1:29138951-29138970 MS.gene94276:intron 15.0%
!! TATATTAATTATTAGCAACA+TGG - chr6.1:29139827-29139846 MS.gene94276:CDS 15.0%
!!! AAAGAAAATAAAAGTTGATT+TGG + chr6.1:29141075-29141094 None:intergenic 15.0%
!!! ATAAAAGGATTTAAAACATA+AGG + chr6.1:29138317-29138336 None:intergenic 15.0%
!!! ATTAAGTTTTAATGTTGTTA+TGG + chr6.1:29138937-29138956 None:intergenic 15.0%
!!! TAATTAAGATAATTGGTAAT+TGG - chr6.1:29138975-29138994 MS.gene94276:CDS 15.0%
!!! TATGAATTTTTAAATTTGGT+AGG + chr6.1:29138782-29138801 None:intergenic 15.0%
!!! TTTTTTGAAAATAAGAATGA+AGG - chr6.1:29139074-29139093 MS.gene94276:intron 15.0%
!! AACATGAATAAAAATTAGAC+GGG - chr6.1:29141649-29141668 MS.gene94276:CDS 20.0%
!! ATATCTTCCCAATAATAATT+AGG + chr6.1:29139228-29139247 None:intergenic 20.0%
!! CAGAAAATGAATATTAAAAG+TGG + chr6.1:29141774-29141793 None:intergenic 20.0%
!! CATAATTTATTTATGCTTTG+GGG - chr6.1:29140267-29140286 MS.gene94276:intron 20.0%
!! GAACATGAATAAAAATTAGA+CGG - chr6.1:29141648-29141667 MS.gene94276:CDS 20.0%
!! GAAGATATTCAATAATCAAT+GGG - chr6.1:29139240-29139259 MS.gene94276:CDS 20.0%
!! GCATAATTTATTTATGCTTT+GGG - chr6.1:29140266-29140285 MS.gene94276:intron 20.0%
!! TAACGGTTAATTAAGATAAT+TGG - chr6.1:29138968-29138987 MS.gene94276:CDS 20.0%
!! TATCTTCCCAATAATAATTA+GGG + chr6.1:29139227-29139246 None:intergenic 20.0%
!! TGCATAATTTATTTATGCTT+TGG - chr6.1:29140265-29140284 MS.gene94276:intron 20.0%
!! TTCCAAAAATACAAATATAC+CGG + chr6.1:29139377-29139396 None:intergenic 20.0%
!! TTTAATGATAGGATTTGAAA+CGG - chr6.1:29139263-29139282 MS.gene94276:CDS 20.0%
!!! ATCATTTTTTTTTTCTGTGT+AGG - chr6.1:29138178-29138197 MS.gene94276:intron 20.0%
!!! CATTTTTTCAAATAGTCTTT+TGG + chr6.1:29139718-29139737 None:intergenic 20.0%
!!! TAGGTTATTTGTTTTTGTAT+AGG - chr6.1:29141132-29141151 MS.gene94276:intron 20.0%
!!! TCTATTTTGTCAAATTTCTA+TGG - chr6.1:29138635-29138654 MS.gene94276:intron 20.0%
!!! TGATGTTACATTAACAATTT+TGG + chr6.1:29140624-29140643 None:intergenic 20.0%
!!! TGTTGTGTTTTTATAACTAT+AGG - chr6.1:29141113-29141132 MS.gene94276:intron 20.0%
!!! TTGATCAATTTTATTGTGAA+TGG + chr6.1:29138411-29138430 None:intergenic 20.0%
!!! TTTTTTTTGACTTTCTGATT+GGG - chr6.1:29139314-29139333 MS.gene94276:intron 20.0%
! AAAATAGAGGCTAATAATGA+AGG - chr6.1:29139039-29139058 MS.gene94276:CDS 25.0%
! AAAGAAAAAAGAACTTACAC+CGG + chr6.1:29138117-29138136 None:intergenic 25.0%
! AACAAAAATACATGCTAGTT+AGG + chr6.1:29140963-29140982 None:intergenic 25.0%
! AAGGGTTGAATATAAAATAG+AGG - chr6.1:29139026-29139045 MS.gene94276:CDS 25.0%
! AATAATGAAATTTGCAAGAG+AGG + chr6.1:29138144-29138163 None:intergenic 25.0%
! AATAGTGTTGTAGAAAATAG+TGG + chr6.1:29138351-29138370 None:intergenic 25.0%
! AGTTATAAAAACACAACACT+TGG + chr6.1:29141111-29141130 None:intergenic 25.0%
! ATAATGAAATTTGCAAGAGA+GGG + chr6.1:29138143-29138162 None:intergenic 25.0%
! ATCACAGTAATACTTTCATT+AGG + chr6.1:29141161-29141180 None:intergenic 25.0%
! ATTAAGTGATCTTACTCTTT+GGG - chr6.1:29140700-29140719 MS.gene94276:intron 25.0%
! CAAATACTAATAAACAATGC+CGG - chr6.1:29140049-29140068 MS.gene94276:intron 25.0%
! GATAAATAATCTTGCATCAA+AGG + chr6.1:29140427-29140446 None:intergenic 25.0%
! GGAAGATATTCAATAATCAA+TGG - chr6.1:29139239-29139258 MS.gene94276:CDS 25.0%
! GTTATAAAAACACAACACTT+GGG + chr6.1:29141110-29141129 None:intergenic 25.0%
! TAGACCATAACAAAGATTAA+AGG - chr6.1:29139905-29139924 MS.gene94276:CDS 25.0%
! TATTAAGTGATCTTACTCTT+TGG - chr6.1:29140699-29140718 MS.gene94276:intron 25.0%
! TCCAAAAATACAAATATACC+GGG + chr6.1:29139376-29139395 None:intergenic 25.0%
!! AAAGCTTAAATCATTTTGCA+AGG + chr6.1:29141703-29141722 None:intergenic 25.0%
!! AAAGCTTTATATAATCACAG+TGG + chr6.1:29138443-29138462 None:intergenic 25.0%
!! AAAGGATATGTTGTTGTTAT+TGG - chr6.1:29138245-29138264 MS.gene94276:intron 25.0%
!! GGGAAAGATTAATTTGATAA+AGG - chr6.1:29137908-29137927 MS.gene94276:CDS 25.0%
!! TAATCAATGGGTTTAATGAT+AGG - chr6.1:29139252-29139271 MS.gene94276:CDS 25.0%
!! TACAATGGATGCATTTTTAT+GGG - chr6.1:29140399-29140418 MS.gene94276:intron 25.0%
!!! AGTTCTGAACTTTGAATTAA+AGG - chr6.1:29141353-29141372 MS.gene94276:intron 25.0%
!!! ATATTTCTGGTTAATAACCA+TGG - chr6.1:29141740-29141759 MS.gene94276:intron 25.0%
!!! CTTATTGATTTTCTCTACAA+TGG - chr6.1:29140745-29140764 MS.gene94276:intron 25.0%
!!! GTTTTTTTTGACTTTCTGAT+TGG - chr6.1:29139313-29139332 MS.gene94276:intron 25.0%
!!! TTAAATGTCAACTTTTGAGA+TGG - chr6.1:29140312-29140331 MS.gene94276:intron 25.0%
!!! TTAACAATTTTGGAAGATAC+AGG + chr6.1:29140614-29140633 None:intergenic 25.0%
AAAATACAAATATACCGGGT+CGG + chr6.1:29139372-29139391 None:intergenic 30.0%
AAACCAAAAGTCACTCTTAT+TGG + chr6.1:29141599-29141618 None:intergenic 30.0%
AACAATTTGTAGGAAAGTCA+TGG + chr6.1:29141217-29141236 None:intergenic 30.0%
AACGGTTTAAGAGATTAAGA+AGG - chr6.1:29139281-29139300 MS.gene94276:CDS 30.0%
ACGGTTTAAGAGATTAAGAA+GGG - chr6.1:29139282-29139301 MS.gene94276:CDS 30.0%
ACTAAGACAATAGACAAACA+TGG + chr6.1:29140465-29140484 None:intergenic 30.0%
ATACATGCTAGTTAGGAATT+AGG + chr6.1:29140956-29140975 None:intergenic 30.0%
ATGAGAAAATGCAACAGAAA+AGG + chr6.1:29137997-29138016 None:intergenic 30.0%
ATGATCGGCACAAATTATAT+CGG - chr6.1:29140542-29140561 MS.gene94276:intron 30.0%
ATTAAGATCTTCACAATGCA+TGG + chr6.1:29139864-29139883 None:intergenic 30.0%
ATTGACATAATCACGAGATT+TGG + chr6.1:29138488-29138507 None:intergenic 30.0%
ATTGTATCCTTAACAAGAGA+GGG + chr6.1:29141397-29141416 None:intergenic 30.0%
CAGAACTATATGAGAATTAC+TGG + chr6.1:29141340-29141359 None:intergenic 30.0%
CCAACCTTTAATCTTTGTTA+TGG + chr6.1:29139912-29139931 None:intergenic 30.0%
CCATAACAAAGATTAAAGGT+TGG - chr6.1:29139909-29139928 MS.gene94276:CDS 30.0%
CTATGAATATGGAATTGCAT+TGG - chr6.1:29139165-29139184 MS.gene94276:intron 30.0%
GAAAGAGTGGAAAATATAGT+TGG + chr6.1:29140515-29140534 None:intergenic 30.0%
GAAGCATGGTCATAATAAAT+GGG + chr6.1:29140568-29140587 None:intergenic 30.0%
GGTAGAAGACTGATTAAATA+AGG - chr6.1:29139119-29139138 MS.gene94276:intron 30.0%
TAATTAGCCAATGAGTTTGA+TGG - chr6.1:29141483-29141502 MS.gene94276:intron 30.0%
TACATGCTAGTTAGGAATTA+GGG + chr6.1:29140955-29140974 None:intergenic 30.0%
TGGTGTATGTGTCTATATAT+TGG - chr6.1:29139636-29139655 MS.gene94276:intron 30.0%
TGTTATGGTCTATCAAACAA+CGG + chr6.1:29139897-29139916 None:intergenic 30.0%
TTAAATAAGGAACGTAAGAG+AGG - chr6.1:29139132-29139151 MS.gene94276:intron 30.0%
TTCAATAAACCCATGAATCA+TGG + chr6.1:29139198-29139217 None:intergenic 30.0%
TTCTCATTACCAACTGTTTA+AGG - chr6.1:29138010-29138029 MS.gene94276:CDS 30.0%
TTCTTCAGTTACTAATATGC+AGG - chr6.1:29140798-29140817 MS.gene94276:intron 30.0%
! AATATGGAATTGCATTGGTA+AGG - chr6.1:29139170-29139189 MS.gene94276:intron 30.0%
! ACAATTTTTGTCTCCCAAAA+AGG - chr6.1:29141429-29141448 MS.gene94276:intron 30.0%
! ACCCGGTATATTTGTATTTT+TGG - chr6.1:29139372-29139391 MS.gene94276:intron 30.0%
! ACCTTTTATTGTGTTATGCA+AGG + chr6.1:29140206-29140225 None:intergenic 30.0%
! AGAAGCATGGTCATAATAAA+TGG + chr6.1:29140569-29140588 None:intergenic 30.0%
! ATCAAACTCATTGGCTAATT+AGG + chr6.1:29141484-29141503 None:intergenic 30.0%
! CATTTTTCCATCAAACTCAT+TGG + chr6.1:29141493-29141512 None:intergenic 30.0%
! CTATATGAGAATTACTGGTT+TGG + chr6.1:29141335-29141354 None:intergenic 30.0%
! GATAATTGGTAATTGGTACT+TGG - chr6.1:29138982-29139001 MS.gene94276:CDS 30.0%
! GTACAATGGATGCATTTTTA+TGG - chr6.1:29140398-29140417 MS.gene94276:intron 30.0%
! GTGGATTGTTAGCATATAAA+AGG + chr6.1:29138332-29138351 None:intergenic 30.0%
! TTGGAAAATGAAGCACTAAT+CGG - chr6.1:29139391-29139410 MS.gene94276:intron 30.0%
!! AGAAGCATTTGTATGTACAA+TGG - chr6.1:29140384-29140403 MS.gene94276:intron 30.0%
!! GGTGTTATTTATGCAACAAT+AGG + chr6.1:29141578-29141597 None:intergenic 30.0%
!! TTATTTATGCTTTGGGGATA+TGG - chr6.1:29140273-29140292 MS.gene94276:intron 30.0%
!!! AAAATTCGTTTTTTGCGATC+CGG - chr6.1:29139337-29139356 MS.gene94276:intron 30.0%
AAATACAAATATACCGGGTC+GGG + chr6.1:29139371-29139390 None:intergenic 35.0%
AAATGATTATCCTACCAGCT+CGG + chr6.1:29140655-29140674 None:intergenic 35.0%
AACCACTAACACAGAAGATT+AGG + chr6.1:29140137-29140156 None:intergenic 35.0%
AAGAAGTGGTAATAGAAGCA+TGG + chr6.1:29140582-29140601 None:intergenic 35.0%
AATTAGGTAGTTGTAGCTTC+AGG + chr6.1:29141468-29141487 None:intergenic 35.0%
ACAAAATCATATCCTACCCA+AGG - chr6.1:29138048-29138067 MS.gene94276:intron 35.0%
ACAAGACACTATGTTCTGAT+TGG + chr6.1:29141298-29141317 None:intergenic 35.0%
ACTTTCTATTAGTGCATGTC+TGG + chr6.1:29138523-29138542 None:intergenic 35.0%
AGACATGCACTAATAGAAAG+TGG - chr6.1:29138522-29138541 MS.gene94276:intron 35.0%
AGCATTCTTACCTAAATTCC+TGG - chr6.1:29139752-29139771 MS.gene94276:intron 35.0%
AGTTGTGCAGAAAAGAACTT+GGG + chr6.1:29141244-29141263 None:intergenic 35.0%
ATGTTTGTTTGTACAACTCC+AGG + chr6.1:29141823-29141842 None:intergenic 35.0%
ATTAGGTAGTTGTAGCTTCA+GGG + chr6.1:29141467-29141486 None:intergenic 35.0%
CACAACACTTGGGAAAAAAA+TGG + chr6.1:29141100-29141119 None:intergenic 35.0%
CATTGTATCCTTAACAAGAG+AGG + chr6.1:29141398-29141417 None:intergenic 35.0%
CTCGATTCAATTCTTGAGAA+TGG - chr6.1:29137959-29137978 MS.gene94276:CDS 35.0%
GAAGTTGAGTGCTATGAATA+TGG - chr6.1:29139154-29139173 MS.gene94276:intron 35.0%
GAATCGGAAAATGGTAAGAA+CGG + chr6.1:29139516-29139535 None:intergenic 35.0%
GCCTTGCATAACACAATAAA+AGG - chr6.1:29140202-29140221 MS.gene94276:intron 35.0%
GCTTTATATAATCACAGTGG+CGG + chr6.1:29138440-29138459 None:intergenic 35.0%
GGTAGAACAGAACAAGAAAA+GGG - chr6.1:29139008-29139027 MS.gene94276:CDS 35.0%
TAAAAGTGGAGTAGAAACCA+TGG + chr6.1:29141760-29141779 None:intergenic 35.0%
TACTCATAGATCTGAGCATA+TGG + chr6.1:29140874-29140893 None:intergenic 35.0%
TATCAGTTCCATAAAGTTCC+TGG + chr6.1:29140361-29140380 None:intergenic 35.0%
TCAATCCATACCAGGAATTT+AGG + chr6.1:29139765-29139784 None:intergenic 35.0%
TCTTACCTAAATTCCTGGTA+TGG - chr6.1:29139757-29139776 MS.gene94276:CDS 35.0%
TGGTAGAACAGAACAAGAAA+AGG - chr6.1:29139007-29139026 MS.gene94276:CDS 35.0%
TTCCTAATCTTCTGTGTTAG+TGG - chr6.1:29140132-29140151 MS.gene94276:intron 35.0%
TTGATGAGGGAACAACATTT+GGG - chr6.1:29140821-29140840 MS.gene94276:intron 35.0%
TTGTATCCTTAACAAGAGAG+GGG + chr6.1:29141396-29141415 None:intergenic 35.0%
TTGTTGTCTGCAGAAGTAAT+TGG - chr6.1:29139098-29139117 MS.gene94276:intron 35.0%
! ACACCAATAAGAGTGACTTT+TGG - chr6.1:29141593-29141612 MS.gene94276:intron 35.0%
! TGGAAAATGAAGCACTAATC+GGG - chr6.1:29139392-29139411 MS.gene94276:intron 35.0%
! TTCTTACCATTTTCCGATTC+CGG - chr6.1:29139516-29139535 MS.gene94276:intron 35.0%
! TTCTTTTCTGCACAACTCAT+TGG - chr6.1:29141247-29141266 MS.gene94276:intron 35.0%
! TTGGTAATTGGTACTTGGTA+TGG - chr6.1:29138987-29139006 MS.gene94276:CDS 35.0%
!! ACTAATATGCAGGTTGATGA+GGG - chr6.1:29140808-29140827 MS.gene94276:intron 35.0%
!! TACTAATATGCAGGTTGATG+AGG - chr6.1:29140807-29140826 MS.gene94276:intron 35.0%
!!! AAATTCGTTTTTTGCGATCC+GGG - chr6.1:29139338-29139357 MS.gene94276:intron 35.0%
!!! AACTCATTGGCTCTTTCTTT+TGG - chr6.1:29141260-29141279 MS.gene94276:intron 35.0%
AGAGCGAATCCTTAAACAGT+TGG + chr6.1:29138022-29138041 None:intergenic 40.0%
AGAGCTTGAGAAGGTTCTAT+AGG + chr6.1:29140777-29140796 None:intergenic 40.0%
AGGAGATGTTGCAAGTATTC+CGG + chr6.1:29140071-29140090 None:intergenic 40.0%
AGTAAGAGCGGCATCAATAA+TGG + chr6.1:29141938-29141957 None:intergenic 40.0%
ATCAGAGCAATTGTTGTCAG+AGG - chr6.1:29139797-29139816 MS.gene94276:CDS 40.0%
ATTTGCATGACATGATCACC+AGG - chr6.1:29140340-29140359 MS.gene94276:intron 40.0%
CATGATCACCAGGAACTTTA+TGG - chr6.1:29140350-29140369 MS.gene94276:intron 40.0%
CGTGGTCTAGGTTATTTAGT+GGG - chr6.1:29139669-29139688 MS.gene94276:intron 40.0%
CTCGAGATCCTAAGTAAGAT+CGG - chr6.1:29138705-29138724 MS.gene94276:intron 40.0%
CTGAAGAAAAGAGCTTGAGA+AGG + chr6.1:29140786-29140805 None:intergenic 40.0%
CTTGGGAAGCAACAATTTGT+AGG + chr6.1:29141227-29141246 None:intergenic 40.0%
GAGTTGTGCAGAAAAGAACT+TGG + chr6.1:29141245-29141264 None:intergenic 40.0%
GGCTTATTAGGAAAAGTGGA+AGG + chr6.1:29138080-29138099 None:intergenic 40.0%
GGTAAGGTTCCATGATTCAT+GGG - chr6.1:29139186-29139205 MS.gene94276:intron 40.0%
TAGTCACAACTCACAAGTGT+CGG + chr6.1:29138602-29138621 None:intergenic 40.0%
TCAAGAATTGAATCGAGCAG+AGG + chr6.1:29137956-29137975 None:intergenic 40.0%
TCGAGATCCTAAGTAAGATC+GGG - chr6.1:29138706-29138725 MS.gene94276:intron 40.0%
TCTGATGAGATTTACCCATC+TGG + chr6.1:29141033-29141052 None:intergenic 40.0%
TGGTAAGGTTCCATGATTCA+TGG - chr6.1:29139185-29139204 MS.gene94276:intron 40.0%
TTAGGTAGTTGTAGCTTCAG+GGG + chr6.1:29141466-29141485 None:intergenic 40.0%
TTAGTGCATGTCTGGATTGA+TGG + chr6.1:29138515-29138534 None:intergenic 40.0%
TTTCTATGGTGTCTATGCGT+CGG - chr6.1:29138649-29138668 MS.gene94276:intron 40.0%
! AACGGGCTTATTAGGAAAAG+TGG + chr6.1:29138084-29138103 None:intergenic 40.0%
! ATAATTTGTGCCGATCATCC+TGG + chr6.1:29140540-29140559 None:intergenic 40.0%
! GCATGCAAGCTTTCTAAGAA+AGG - chr6.1:29138227-29138246 MS.gene94276:intron 40.0%
! GTTGATGAGGGAACAACATT+TGG - chr6.1:29140820-29140839 MS.gene94276:intron 40.0%
! TAATTGACTCAACCGACGAA+AGG + chr6.1:29139970-29139989 None:intergenic 40.0%
! TAATTTGTGCCGATCATCCT+GGG + chr6.1:29140539-29140558 None:intergenic 40.0%
! TATATTGGTGCTTCATTGCG+TGG - chr6.1:29139651-29139670 MS.gene94276:intron 40.0%
! TATTTTCCACTCTTTCTCCC+AGG - chr6.1:29140519-29140538 MS.gene94276:intron 40.0%
! TTTTCTGTGTAGGCAACATC+TGG - chr6.1:29138188-29138207 MS.gene94276:intron 40.0%
AAAGTGGAAGGTGAAGACCT+TGG + chr6.1:29138068-29138087 None:intergenic 45.0%
AAGTGGAAGGTGAAGACCTT+GGG + chr6.1:29138067-29138086 None:intergenic 45.0%
AATCCAAAAGCCATTGCTGC+AGG + chr6.1:29140009-29140028 None:intergenic 45.0%
ACAGGACTGCTTTCAAGAAG+TGG + chr6.1:29140596-29140615 None:intergenic 45.0%
ACATCATTTACTCACCGAGC+TGG - chr6.1:29140638-29140657 MS.gene94276:intron 45.0%
ACTCAGAGGATTCCAATAGG+CGG + chr6.1:29141903-29141922 None:intergenic 45.0%
ACTCTTTCTCCCAGGATGAT+CGG - chr6.1:29140527-29140546 MS.gene94276:intron 45.0%
AGGTTGGAAACCCAGAAAAC+CGG + chr6.1:29139438-29139457 None:intergenic 45.0%
AGTGCGTGTTTGACATGTGT+TGG - chr6.1:29138573-29138592 MS.gene94276:intron 45.0%
ATCCAAAAGCCATTGCTGCA+GGG + chr6.1:29140008-29140027 None:intergenic 45.0%
ATCTGGACCGTAGAATCGTA+CGG + chr6.1:29139581-29139600 None:intergenic 45.0%
CAATACACCAGACACAACCA+TGG + chr6.1:29139618-29139637 None:intergenic 45.0%
CATGGTTGTGTCTGGTGTAT+TGG - chr6.1:29139616-29139635 MS.gene94276:intron 45.0%
CTATTGGAATCCTCTGAGTG+CGG - chr6.1:29141904-29141923 MS.gene94276:CDS 45.0%
GAAACTCACTTGTGCACTTG+TGG - chr6.1:29141542-29141561 MS.gene94276:intron 45.0%
GATCCTAAGTAAGATCGGGA+AGG - chr6.1:29138710-29138729 MS.gene94276:intron 45.0%
GATCGAGAGTTTGTCTACCA+TGG - chr6.1:29139598-29139617 MS.gene94276:intron 45.0%
GATCTCGAGTTTGTCTACCA+TGG + chr6.1:29138694-29138713 None:intergenic 45.0%
GCGTGGTCTAGGTTATTTAG+TGG - chr6.1:29139668-29139687 MS.gene94276:intron 45.0%
GGAAAATGGTAAGAACGGCT+TGG + chr6.1:29139511-29139530 None:intergenic 45.0%
TATTGGAATCCTCTGAGTGC+GGG - chr6.1:29141905-29141924 MS.gene94276:CDS 45.0%
TCACTTGTGCACTTGTGGTT+GGG - chr6.1:29141547-29141566 MS.gene94276:intron 45.0%
TCAGTGTTGTGTTGTGTCCA+TGG - chr6.1:29138674-29138693 MS.gene94276:intron 45.0%
TCTGGGTTTCCAACCTAACT+CGG - chr6.1:29139442-29139461 MS.gene94276:intron 45.0%
TCTTGAGAATGGCGTTGCTT+TGG - chr6.1:29137970-29137989 MS.gene94276:CDS 45.0%
TGCGAGCAGATACACTCTTA+TGG - chr6.1:29141520-29141539 MS.gene94276:intron 45.0%
TGGTAGACAAACTCTCGATC+TGG + chr6.1:29139598-29139617 None:intergenic 45.0%
TTGTACCGAGCAGTGCAAAT+CGG + chr6.1:29140032-29140051 None:intergenic 45.0%
TTGTCTACCATGGTTGTGTC+TGG - chr6.1:29139608-29139627 MS.gene94276:intron 45.0%
! ATGACGCAAACGGGCTTATT+AGG + chr6.1:29138092-29138111 None:intergenic 45.0%
! CTGGTATGGATTGATGCAGT+GGG - chr6.1:29139771-29139790 MS.gene94276:CDS 45.0%
! GGAAGCATGCACTTAGAAAG+TGG + chr6.1:29138390-29138409 None:intergenic 45.0%
!! AGCCTGAAAAGCTTTGAGGT+GGG + chr6.1:29139945-29139964 None:intergenic 45.0%
!! GGAGGAGTATGCTCCTTTTT+GGG + chr6.1:29141445-29141464 None:intergenic 45.0%
!! TTTTCAGGCTGACCTTTCGT+CGG - chr6.1:29139955-29139974 MS.gene94276:intron 45.0%
!!! TATATATGAATTTTTAAATT+TGG + chr6.1:29138786-29138805 None:intergenic 5.0%
AACGTAGATCCAGCCGAGTT+AGG + chr6.1:29139458-29139477 None:intergenic 50.0%
AAGTTCCAGCAAGCCTGTCT+TGG - chr6.1:29141851-29141870 MS.gene94276:CDS 50.0%
ACCCATGAGATCGTGAATCG+GGG - chr6.1:29138733-29138752 MS.gene94276:intron 50.0%
AGTTCCAGCAAGCCTGTCTT+GGG - chr6.1:29141852-29141871 MS.gene94276:CDS 50.0%
ATCTCCTAGAGTCACAGCTG+AGG - chr6.1:29140084-29140103 MS.gene94276:intron 50.0%
CAAAGAATGCCACCCAAGAC+AGG + chr6.1:29141867-29141886 None:intergenic 50.0%
CATTTACTCACCGAGCTGGT+AGG - chr6.1:29140642-29140661 MS.gene94276:intron 50.0%
CCACTGCATCAATCCATACC+AGG + chr6.1:29139773-29139792 None:intergenic 50.0%
CGCACTCAGAGGATTCCAAT+AGG + chr6.1:29141906-29141925 None:intergenic 50.0%
CGTGGAACCGTACGATTCTA+CGG - chr6.1:29139571-29139590 MS.gene94276:intron 50.0%
CTCACTTGTGCACTTGTGGT+TGG - chr6.1:29141546-29141565 MS.gene94276:intron 50.0%
GACCCATGAGATCGTGAATC+GGG - chr6.1:29138732-29138751 MS.gene94276:intron 50.0%
GATCATCCTGGGAGAAAGAG+TGG + chr6.1:29140528-29140547 None:intergenic 50.0%
GGACCCATGAGATCGTGAAT+CGG - chr6.1:29138731-29138750 MS.gene94276:intron 50.0%
GGTCAGCCTGAAAAGCTTTG+AGG + chr6.1:29139949-29139968 None:intergenic 50.0%
GGTCCTTCCCGATCTTACTT+AGG + chr6.1:29138716-29138735 None:intergenic 50.0%
GGTTGGAAACCCAGAAAACC+GGG + chr6.1:29139437-29139456 None:intergenic 50.0%
TACCCATCTGGCAAAGCTGT+CGG + chr6.1:29141021-29141040 None:intergenic 50.0%
TACGCACCCCTCTCTTGTTA+AGG - chr6.1:29141387-29141406 MS.gene94276:intron 50.0%
TAGATCCAGCCGAGTTAGGT+TGG + chr6.1:29139454-29139473 None:intergenic 50.0%
TCAGTACTTCCCTGCAGCAA+TGG - chr6.1:29139996-29140015 MS.gene94276:intron 50.0%
TCTCCTAGAGTCACAGCTGA+GGG - chr6.1:29140085-29140104 MS.gene94276:intron 50.0%
TGAATCGGGGGATCGTAACA+CGG - chr6.1:29138746-29138765 MS.gene94276:intron 50.0%
TGCAAGGCAAAGCATGAGCA+TGG + chr6.1:29140190-29140209 None:intergenic 50.0%
TGCATCAGTGTTGCAGATCC+TGG - chr6.1:29141802-29141821 MS.gene94276:CDS 50.0%
TGTGTAGGCAACATCTGGCT+TGG - chr6.1:29138193-29138212 MS.gene94276:intron 50.0%
! CCTGGTATGGATTGATGCAG+TGG - chr6.1:29139770-29139789 MS.gene94276:CDS 50.0%
! GGATTCCGATTTGCACTGCT+CGG - chr6.1:29140024-29140043 MS.gene94276:intron 50.0%
! GTGTAGGCAACATCTGGCTT+GGG - chr6.1:29138194-29138213 MS.gene94276:intron 50.0%
! TACACCGGTGATGACGCAAA+CGG + chr6.1:29138102-29138121 None:intergenic 50.0%
! TGCCCACCTCAAAGCTTTTC+AGG - chr6.1:29139940-29139959 MS.gene94276:CDS 50.0%
! TTCCCTGCAGCAATGGCTTT+TGG - chr6.1:29140003-29140022 MS.gene94276:intron 50.0%
!! CAGCCTGAAAAGCTTTGAGG+TGG + chr6.1:29139946-29139965 None:intergenic 50.0%
!! GGGAGGAGTATGCTCCTTTT+TGG + chr6.1:29141446-29141465 None:intergenic 50.0%
AACCCAGAAAACCGGGTTCG+CGG + chr6.1:29139430-29139449 None:intergenic 55.0%
AAGCCCGTTTGCGTCATCAC+CGG - chr6.1:29138095-29138114 MS.gene94276:intron 55.0%
AGGTGGCCGGAATCGGAAAA+TGG + chr6.1:29139525-29139544 None:intergenic 55.0%
CACCGACAGCTTTGCCAGAT+GGG - chr6.1:29141016-29141035 MS.gene94276:intron 55.0%
CCCATGAGATCGTGAATCGG+GGG - chr6.1:29138734-29138753 MS.gene94276:intron 55.0%
CCCCCGATTCACGATCTCAT+GGG + chr6.1:29138737-29138756 None:intergenic 55.0%
CCTATGAGCACGAAGAGGTC+AGG - chr6.1:29139542-29139561 MS.gene94276:intron 55.0%
CCTGACCTCTTCGTGCTCAT+AGG + chr6.1:29139545-29139564 None:intergenic 55.0%
GAAGAGGTCAGGCAAGATCG+TGG - chr6.1:29139553-29139572 MS.gene94276:intron 55.0%
GACCTCTTCGTGCTCATAGG+TGG + chr6.1:29139542-29139561 None:intergenic 55.0%
GGAAGGTGAAGACCTTGGGT+AGG + chr6.1:29138063-29138082 None:intergenic 55.0%
GGTAGTTGTAGCTTCAGGGG+AGG + chr6.1:29141463-29141482 None:intergenic 55.0%
GGTGCTTCATTGCGTGGTCT+AGG - chr6.1:29139657-29139676 MS.gene94276:intron 55.0%
GGTTTCCAACCTAACTCGGC+TGG - chr6.1:29139446-29139465 MS.gene94276:intron 55.0%
TAGCCCTCAGCTGTGACTCT+AGG + chr6.1:29140091-29140110 None:intergenic 55.0%
TCCCCCGATTCACGATCTCA+TGG + chr6.1:29138738-29138757 None:intergenic 55.0%
TCTTCGTGCTCATAGGTGGC+CGG + chr6.1:29139538-29139557 None:intergenic 55.0%
TGCTCATAGGTGGCCGGAAT+CGG + chr6.1:29139532-29139551 None:intergenic 55.0%
! ACACCGGTGATGACGCAAAC+GGG + chr6.1:29138101-29138120 None:intergenic 55.0%
! AGCGAGTGTTGCGATTCGCA+AGG - chr6.1:29141620-29141639 MS.gene94276:CDS 55.0%
ACCCAGAAAACCGGGTTCGC+GGG + chr6.1:29139429-29139448 None:intergenic 60.0%
CCACCGACAGCTTTGCCAGA+TGG - chr6.1:29141015-29141034 MS.gene94276:intron 60.0%
CCATCTGGCAAAGCTGTCGG+TGG + chr6.1:29141018-29141037 None:intergenic 60.0%
GGAATCGTTCCCGCACTCAG+AGG + chr6.1:29141917-29141936 None:intergenic 60.0%
GGCCACCTATGAGCACGAAG+AGG - chr6.1:29139537-29139556 MS.gene94276:intron 60.0%
TCCAGCAAGCCTGTCTTGGG+TGG - chr6.1:29141855-29141874 MS.gene94276:CDS 60.0%
! ACCCGCGAACCCGGTTTTCT+GGG - chr6.1:29139425-29139444 MS.gene94276:intron 60.0%
ACCGCGTCCACGACTTTGCG+CGG - chr6.1:29139481-29139500 MS.gene94276:intron 65.0%
CACGAAACGACCCGCGAACC+CGG - chr6.1:29139416-29139435 MS.gene94276:intron 65.0%
GCCACCCAAGACAGGCTTGC+TGG + chr6.1:29141859-29141878 None:intergenic 65.0%
TGGATCGCCGCGCAAAGTCG+TGG + chr6.1:29139491-29139510 None:intergenic 65.0%
! GACCCGCGAACCCGGTTTTC+TGG - chr6.1:29139424-29139443 MS.gene94276:intron 65.0%
ACCGGGTCGGGTTCGTGACC+CGG + chr6.1:29139359-29139378 None:intergenic 70.0%
GCCGCGCAAAGTCGTGGACG+CGG + chr6.1:29139485-29139504 None:intergenic 70.0%
GCGCAAAGTCGTGGACGCGG+TGG + chr6.1:29139482-29139501 None:intergenic 70.0%
TCCGGGTCACGAACCCGACC+CGG - chr6.1:29139355-29139374 MS.gene94276:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 29137906 29141963 29137906 ID=MS.gene94276
chr6.1 mRNA 29137906 29141963 29137906 ID=MS.gene94276.t1;Parent=MS.gene94276
chr6.1 exon 29141751 29141963 29141751 ID=MS.gene94276.t1.exon1;Parent=MS.gene94276.t1
chr6.1 CDS 29141751 29141963 29141751 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29141603 29141669 29141603 ID=MS.gene94276.t1.exon2;Parent=MS.gene94276.t1
chr6.1 CDS 29141603 29141669 29141603 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29140051 29140079 29140051 ID=MS.gene94276.t1.exon3;Parent=MS.gene94276.t1
chr6.1 CDS 29140051 29140079 29140051 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29139753 29139961 29139753 ID=MS.gene94276.t1.exon4;Parent=MS.gene94276.t1
chr6.1 CDS 29139753 29139961 29139753 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29139210 29139328 29139210 ID=MS.gene94276.t1.exon5;Parent=MS.gene94276.t1
chr6.1 CDS 29139210 29139328 29139210 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29138968 29139063 29138968 ID=MS.gene94276.t1.exon6;Parent=MS.gene94276.t1
chr6.1 CDS 29138968 29139063 29138968 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29138807 29138882 29138807 ID=MS.gene94276.t1.exon7;Parent=MS.gene94276.t1
chr6.1 CDS 29138807 29138882 29138807 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
chr6.1 exon 29137906 29138059 29137906 ID=MS.gene94276.t1.exon8;Parent=MS.gene94276.t1
chr6.1 CDS 29137906 29138059 29137906 ID=cds.MS.gene94276.t1;Parent=MS.gene94276.t1
Gene Sequence

>MS.gene94276

ATGGGAAAGATTAATTTGATAAAGGATTTATTACAATCTATCTATTTCCTCTGCTCGATTCAATTCTTGAGAATGGCGTTGCTTTGGACCTTTTCTGTTGCATTTTCTCATTACCAACTGTTTAAGGATTCGCTCTTTTCTCACAAAATCATATCCTACCCAAGGTCTTCACCTTCCACTTTTCCTAATAAGCCCGTTTGCGTCATCACCGGTGTAAGTTCTTTTTTCTTTCTTCCCTCTCTTGCAAATTTCATTATTACTATGTGAATTCTATCATTTTTTTTTTCTGTGTAGGCAACATCTGGCTTGGGATTATCTACTGCATGCAAGCTTTCTAAGAAAGGATATGTTGTTGTTATTGGTAATTCTTTATTCTTTTTGCTAATCACGTTACAAATGCTTACAATACCTTATGTTTTAAATCCTTTTATATGCTAACAATCCACTATTTTCTACAACACTATTTAATTCTAAGTGAAATCCACTTTCTAAGTGCATGCTTCCATTCACAATAAAATTGATCAAATTACACCGCCACTGTGATTATATAAAGCTTTATATCTAAACTGTAGTTTTTGTCCAAATCTCGTGATTATGTCAATCTCACCATCAATCCAGACATGCACTAATAGAAAGTGGATCTATGTATCATCGAAGCTTCAGACTAAGTGCGTGTTTGACATGTGTTGGTGTCCGACACTTGTGAGTTGTGACTAAAATACAATCATTTCTATTTTGTCAAATTTCTATGGTGTCTATGCGTCGGTGTCAGTGTTGTGTTGTGTCCATGGTAGACAAACTCGAGATCCTAAGTAAGATCGGGAAGGACCCATGAGATCGTGAATCGGGGGATCGTAACACGGATCGTAAGATCCTACCAAATTTAAAAATTCATATATATTGCATATAAATTCATACATACTCATATGAAGCAACATAATTTGATAGAAAAAAAACTTTAAATAAAACTCAAATTCATTAATAGAAAAAGAAAAAAAAAAACACTTAAAAACAGTACTCATACAACTCCATAACAACATTAAAACTTAATCATAATTATCTTAACGGTTAATTAAGATAATTGGTAATTGGTACTTGGTATGGTAGAACAGAACAAGAAAAGGGTTGAATATAAAATAGAGGCTAATAATGAAGGATTTTTTTTTATTTTTTTGAAAATAAGAATGAAGGATTGTTGTCTGCAGAAGTAATTGGTAGAAGACTGATTAAATAAGGAACGTAAGAGAGGAAGTTGAGTGCTATGAATATGGAATTGCATTGGTAAGGTTCCATGATTCATGGGTTTATTGAAAAATTTCCCTAATTATTATTGGGAAGATATTCAATAATCAATGGGTTTAATGATAGGATTTGAAACGGTTTAAGAGATTAAGAAGGGTGAAAAACGTTTTTTTTGACTTTCTGATTGGGAAAATTCGTTTTTTGCGATCCGGGTCACGAACCCGACCCGGTATATTTGTATTTTTGGAAAATGAAGCACTAATCGGGTCACGAAACGACCCGCGAACCCGGTTTTCTGGGTTTCCAACCTAACTCGGCTGGATCTACGTTACCACCGCGTCCACGACTTTGCGCGGCGATCCAAGCCGTTCTTACCATTTTCCGATTCCGGCCACCTATGAGCACGAAGAGGTCAGGCAAGATCGTGGAACCGTACGATTCTACGGTCCAGATCGAGAGTTTGTCTACCATGGTTGTGTCTGGTGTATTGGTGTATGTGTCTATATATTGGTGCTTCATTGCGTGGTCTAGGTTATTTAGTGGGATTTATTCAATAATAGAGTGTGTCCAAAAGACTATTTGAAAAAATGTGCTGCTACTTGCTAGCATTCTTACCTAAATTCCTGGTATGGATTGATGCAGTGGGAAGATCAGAGCAATTGTTGTCAGAGGTATTTTCTATATTAATTATTAGCAACATGGTAATGTTGATTCCATGCATTGTGAAGATCTTAATTGTGTTCTTTCCGTTGTTTGATAGACCATAACAAAGATTAAAGGTTGGAATGAAGATGCCCACCTCAAAGCTTTTCAGGCTGACCTTTCGTCGGTTGAGTCAATTATAAAGTTCAGTACTTCCCTGCAGCAATGGCTTTTGGATTCCGATTTGCACTGCTCGGTACAAATACTAATAAACAATGCCGGAATACTTGCAACATCTCCTAGAGTCACAGCTGAGGGCTACGATCAGTAATTACTTTTTTTTTCCTAATCTTCTGTGTTAGTGGTTAACAAAATTCTATCTTTATCATTGAAACTGCCATGCTCATGCTTTGCCTTGCATAACACAATAAAAGGTGCATTAGACACACTTTCAAATAATATTATTTTCGTAATCTGCATAATTTATTTATGCTTTGGGGATATGGTAATACTTATTATTAATTAAATGTCAACTTTTGAGATGGTGTTGATTTGCATGACATGATCACCAGGAACTTTATGGAACTGATAGTTAGAAGCATTTGTATGTACAATGGATGCATTTTTATGGGAGCCTTTGATGCAAGATTATTTATCTGTTTTATATCTGCTCCATGTTTGTCTATTGTCTTAGTTTCAAAATTAGTAGTTACTCTTAAAATCCAACTATATTTTCCACTCTTTCTCCCAGGATGATCGGCACAAATTATATCGGCCCATTTATTATGACCATGCTTCTATTACCACTTCTTGAAAGCAGTCCTGTATCTTCCAAAATTGTTAATGTAACATCATTTACTCACCGAGCTGGTAGGATAATCATTTTAGTACTCATTTTTTGATTTATATTATTAAGTGATCTTACTCTTTGGGTTTTACTGTCTTTCATAAAATACTTATTGATTTTCTCTACAATGGCGCACTCCTATAGAACCTTCTCAAGCTCTTTTCTTCAGTTACTAATATGCAGGTTGATGAGGGAACAACATTTGGGAAGAGATTTTTAAAATCAAAACAATATCCATATGCTCAGATCTATGAGTATTCAAAATGTAAGCTGCATATTCTGAATGAACTTATATAGATTACACTGTATCTTTAGCCCTAATTCCTAACTAGCATGTATTTTTGTTGAAGTATGTCTACTTCTCTTCTCATATGAGCTCCACCGACAGCTTTGCCAGATGGGTAAATCTCATCAGATATTTGTCAAGTATGTTTACCAAATCAACTTTTATTTTCTTTTGCCATTTTTTTCCCAAGTGTTGTGTTTTTATAACTATAGGTTATTTGTTTTTGTATAGGTTACCTAATGAAAGTATTACTGTGATCTTCGTTGCTCGAATATGTTTTTTTGATTGCTTCCATGACTTTCCTACAAATTGTTGCTTCCCAAGTTCTTTTCTGCACAACTCATTGGCTCTTTCTTTTGGCAAATGTATATGCCAATCAGAACATAGTGTCTTGTCTGTCGATCTCATGCCAAACCAGTAATTCTCATATAGTTCTGAACTTTGAATTAAAGGTTGAGATCTGTTACGCACCCCTCTCTTGTTAAGGATACAATGAAGCTACTATCACAATTTTTGTCTCCCAAAAAGGAGCATACTCCTCCCCTGAAGCTACAACTACCTAATTAGCCAATGAGTTTGATGGAAAAATGTTTTAAGTGCGAGCAGATACACTCTTATGGAAACTCACTTGTGCACTTGTGGTTGGGTTTAACCTATTGTTGCATAAATAACACCAATAAGAGTGACTTTTGGTTTGAGCGAGTGTTGCGATTCGCAAGGAAAACGAACATGAATAAAAATTAGACGGGAAAATAAAAAATTGCTAGAAAAAGAGAGCCTTGCAAAATGATTTAAGCTTTGTAGAAAAAACTTTATTATATTTCTGGTTAATAACCATGGTTTCTACTCCACTTTTAATATTCATTTTCTGTATTGCTATGCATCAGTGTTGCAGATCCTGGAGTTGTACAAACAAACATCATGCGAGAAGTTCCAGCAAGCCTGTCTTGGGTGGCATTCTTTGTACTGAAGCGTCTACGCCTATTGGAATCCTCTGAGTGCGGGAACGATTCCATTATTGATGCCGCTCTTACTCCGCCT
Protein sequence

>MS.gene94276.t1

MGKINLIKDLLQSIYFLCSIQFLRMALLWTFSVAFSHYQLFKDSLFSHKIISYPRSSPSTFPNKPVCVITGATSGLGLSTACKLSKKGYVVVIVGRSEQLLSETITKIKGWNEDAHLKAFQADLSSVESIIKFSTSLQQWLLDSDLHCSVQILINNAGILATSPRVTAEGYDQMIGTNYIGPFIMTMLLLPLLESSPVSSKIVNVTSFTHRAVTNMQVDEGTTFGKRFLKSKQYPYAQIYEYSKLCLLLFSYELHRQLCQMGKSHQIFVNVADPGVVQTNIMREVPASLSWVAFFVLKRLRLLESSECGNDSIIDAALTPP