Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96209.t1 | XP_003593981.1 | 97.9 | 338 | 7 | 0 | 54 | 391 | 21 | 358 | 7.70E-194 | 686.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96209.t1 | P19515 | 31.2 | 247 | 149 | 8 | 94 | 336 | 131 | 360 | 2.0e-25 | 118.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96209.t1 | B7FJ77 | 97.9 | 338 | 7 | 0 | 54 | 391 | 21 | 358 | 5.5e-194 | 686.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene96209 | 0.817593 | 3.04E-52 | -1.69E-46 |
MS.gene049680 | MS.gene96209 | 0.81899 | 1.47E-52 | -1.69E-46 |
MS.gene049983 | MS.gene96209 | 0.818804 | 1.62E-52 | -1.69E-46 |
MS.gene050384 | MS.gene96209 | 0.812826 | 3.49E-51 | -1.69E-46 |
MS.gene050386 | MS.gene96209 | 0.804607 | 1.99E-49 | -1.69E-46 |
MS.gene050646 | MS.gene96209 | 0.823157 | 1.61E-53 | -1.69E-46 |
MS.gene050945 | MS.gene96209 | 0.823338 | 1.46E-53 | -1.69E-46 |
MS.gene051343 | MS.gene96209 | 0.824711 | 6.96E-54 | -1.69E-46 |
MS.gene051676 | MS.gene96209 | 0.811776 | 5.91E-51 | -1.69E-46 |
MS.gene051699 | MS.gene96209 | 0.816758 | 4.69E-52 | -1.69E-46 |
MS.gene051975 | MS.gene96209 | 0.82999 | 3.78E-55 | -1.69E-46 |
MS.gene052072 | MS.gene96209 | 0.802516 | 5.41E-49 | -1.69E-46 |
MS.gene052533 | MS.gene96209 | 0.804259 | 2.35E-49 | -1.69E-46 |
MS.gene053045 | MS.gene96209 | 0.805963 | 1.04E-49 | -1.69E-46 |
MS.gene053564 | MS.gene96209 | 0.807598 | 4.67E-50 | -1.69E-46 |
MS.gene053575 | MS.gene96209 | 0.821864 | 3.22E-53 | -1.69E-46 |
MS.gene053879 | MS.gene96209 | 0.852223 | 5.32E-61 | -1.69E-46 |
MS.gene053931 | MS.gene96209 | 0.800064 | 1.72E-48 | -1.69E-46 |
MS.gene053963 | MS.gene96209 | 0.814197 | 1.74E-51 | -1.69E-46 |
MS.gene054536 | MS.gene96209 | 0.808353 | 3.23E-50 | -1.69E-46 |
MS.gene05469 | MS.gene96209 | 0.841063 | 5.96E-58 | -1.69E-46 |
MS.gene054892 | MS.gene96209 | 0.803738 | 3.02E-49 | -1.69E-46 |
MS.gene054893 | MS.gene96209 | 0.805143 | 1.54E-49 | -1.69E-46 |
MS.gene055150 | MS.gene96209 | 0.828976 | 6.66E-55 | -1.69E-46 |
MS.gene056699 | MS.gene96209 | 0.833308 | 5.75E-56 | -1.69E-46 |
MS.gene056825 | MS.gene96209 | 0.8077 | 4.45E-50 | -1.69E-46 |
MS.gene056986 | MS.gene96209 | 0.829753 | 4.32E-55 | -1.69E-46 |
MS.gene057102 | MS.gene96209 | 0.826276 | 2.97E-54 | -1.69E-46 |
MS.gene057155 | MS.gene96209 | 0.806172 | 9.36E-50 | -1.69E-46 |
MS.gene057208 | MS.gene96209 | 0.831874 | 1.30E-55 | -1.69E-46 |
MS.gene057392 | MS.gene96209 | 0.818956 | 1.50E-52 | -1.69E-46 |
MS.gene057999 | MS.gene96209 | 0.829921 | 3.93E-55 | -1.69E-46 |
MS.gene058592 | MS.gene96209 | 0.819228 | 1.30E-52 | -1.69E-46 |
MS.gene05952 | MS.gene96209 | 0.820673 | 6.06E-53 | -1.69E-46 |
MS.gene05985 | MS.gene96209 | -0.853955 | 1.70E-61 | -1.69E-46 |
MS.gene060244 | MS.gene96209 | 0.845214 | 4.67E-59 | -1.69E-46 |
MS.gene060259 | MS.gene96209 | 0.806 | 1.02E-49 | -1.69E-46 |
MS.gene060933 | MS.gene96209 | 0.837533 | 4.92E-57 | -1.69E-46 |
MS.gene060935 | MS.gene96209 | 0.85396 | 1.69E-61 | -1.69E-46 |
MS.gene060937 | MS.gene96209 | 0.864466 | 1.19E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004455 | MS.gene96209 | PPI |
MS.gene96209 | MS.gene002761 | PPI |
MS.gene96209 | MS.gene00993 | PPI |
MS.gene002761 | MS.gene96209 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96209.t1 | MTR_2g020020 | 97.640 | 339 | 8 | 0 | 53 | 391 | 20 | 358 | 0.0 | 693 |
MS.gene96209.t1 | MTR_7g096120 | 36.145 | 166 | 78 | 7 | 131 | 272 | 198 | 359 | 3.04e-13 | 71.2 |
MS.gene96209.t1 | MTR_1995s0010 | 34.940 | 166 | 80 | 8 | 131 | 272 | 2 | 163 | 5.71e-13 | 68.2 |
MS.gene96209.t1 | MTR_2g015690 | 31.319 | 182 | 90 | 8 | 122 | 270 | 131 | 310 | 8.78e-13 | 69.7 |
MS.gene96209.t1 | MTR_7g096140 | 34.337 | 166 | 81 | 7 | 131 | 272 | 198 | 359 | 1.32e-12 | 69.3 |
MS.gene96209.t1 | MTR_4g087830 | 29.348 | 184 | 94 | 8 | 116 | 267 | 110 | 289 | 4.45e-12 | 67.4 |
MS.gene96209.t1 | MTR_7g081620 | 29.762 | 168 | 90 | 6 | 131 | 272 | 191 | 356 | 7.12e-12 | 67.0 |
MS.gene96209.t1 | MTR_4g077070 | 32.919 | 161 | 85 | 5 | 131 | 270 | 223 | 381 | 1.65e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96209.t1 | AT5G18630 | 64.526 | 327 | 112 | 4 | 55 | 378 | 22 | 347 | 3.27e-156 | 444 |
MS.gene96209.t1 | AT5G18630 | 64.506 | 324 | 111 | 4 | 58 | 378 | 26 | 348 | 1.10e-154 | 440 |
MS.gene96209.t1 | AT5G18640 | 62.769 | 325 | 117 | 4 | 55 | 376 | 22 | 345 | 2.45e-153 | 437 |
MS.gene96209.t1 | AT5G18640 | 62.769 | 325 | 117 | 4 | 55 | 376 | 22 | 345 | 2.45e-153 | 437 |
MS.gene96209.t1 | AT5G18640 | 62.769 | 325 | 117 | 4 | 55 | 376 | 34 | 357 | 3.46e-153 | 437 |
MS.gene96209.t1 | AT5G18640 | 62.769 | 325 | 117 | 4 | 55 | 376 | 34 | 357 | 3.46e-153 | 437 |
MS.gene96209.t1 | AT5G18630 | 67.925 | 265 | 83 | 2 | 55 | 317 | 22 | 286 | 3.12e-136 | 391 |
MS.gene96209.t1 | AT5G18640 | 67.170 | 265 | 85 | 2 | 55 | 317 | 22 | 286 | 9.03e-135 | 387 |
MS.gene96209.t1 | AT2G44810 | 31.373 | 153 | 90 | 6 | 131 | 270 | 118 | 268 | 8.55e-13 | 69.3 |
MS.gene96209.t1 | AT2G44810 | 31.373 | 153 | 90 | 6 | 131 | 270 | 208 | 358 | 1.55e-12 | 69.3 |
MS.gene96209.t1 | AT2G30550 | 31.720 | 186 | 90 | 9 | 122 | 273 | 208 | 390 | 2.14e-12 | 68.9 |
MS.gene96209.t1 | AT2G30550 | 31.720 | 186 | 90 | 9 | 122 | 273 | 208 | 390 | 3.29e-12 | 68.2 |
Find 81 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACGAGGTGTGATGGATTC+AGG | 0.187696 | 2.2:-64905723 | MS.gene96209:CDS |
GAATGTCCTAACGCTATAAT+TGG | 0.247096 | 2.2:+64901120 | None:intergenic |
TTTGTAACTCGGATTGTATT+TGG | 0.257884 | 2.2:+64900067 | None:intergenic |
TATAGCGTTAGGACATTCTA+TGG | 0.261149 | 2.2:-64901115 | MS.gene96209:CDS |
ACTGGATTGAAGATTTATAT+TGG | 0.271080 | 2.2:-64901359 | MS.gene96209:CDS |
TACATTAATATCATGAAATA+TGG | 0.298573 | 2.2:-64905849 | None:intergenic |
ACCATTGCATCGTCCATATC+TGG | 0.298803 | 2.2:+64901315 | None:intergenic |
CAGGACGTATTGTTGTATTA+TGG | 0.319238 | 2.2:+64901190 | None:intergenic |
TGATGTCGAGCATTGCTTAC+AGG | 0.324280 | 2.2:-64902268 | MS.gene96209:intron |
AATGTCCAGGTTATGACATT+TGG | 0.325688 | 2.2:-64900142 | MS.gene96209:CDS |
AGAAGCATATTCCACTAATA+TGG | 0.340478 | 2.2:+64903028 | None:intergenic |
TGGCTTTATAACATTGGATT+AGG | 0.341814 | 2.2:-64899360 | MS.gene96209:CDS |
ACAGACCACTTAGTCTATTA+TGG | 0.351770 | 2.2:-64899079 | MS.gene96209:CDS |
CATTTGGACAACCACGTATT+GGG | 0.356503 | 2.2:-64900126 | MS.gene96209:CDS |
ATCCTATTCTAGGCATTTGT+TGG | 0.358162 | 2.2:-64902118 | MS.gene96209:intron |
TGAAATAAATTATCCAGATA+TGG | 0.373021 | 2.2:-64901328 | MS.gene96209:CDS |
TGTGGTAAATAGTAATAGTA+TGG | 0.381803 | 2.2:+64900016 | None:intergenic |
GAAGTTTCCTCTTGAATCTC+TGG | 0.389569 | 2.2:+64898982 | None:intergenic |
ACATTTGGACAACCACGTAT+TGG | 0.395829 | 2.2:-64900127 | MS.gene96209:CDS |
GTAATAGTATGGAGGCAAAT+GGG | 0.400466 | 2.2:+64900027 | None:intergenic |
GATATTCCAATTATAGCGTT+AGG | 0.403714 | 2.2:-64901126 | MS.gene96209:CDS |
ATAACGATTCTGCATGTTTG+TGG | 0.409009 | 2.2:+64899034 | None:intergenic |
GAGTAGAGAGTTTGACAATC+AGG | 0.409874 | 2.2:-64898921 | MS.gene96209:CDS |
GATTAGGTAGTCTTGTGTAC+AGG | 0.416781 | 2.2:-64899344 | MS.gene96209:CDS |
AGTAATAGTATGGAGGCAAA+TGG | 0.428634 | 2.2:+64900026 | None:intergenic |
TACACTTGCTACCATATTAG+TGG | 0.437079 | 2.2:-64903039 | MS.gene96209:CDS |
GCCAATTCAATAGACATTAA+CGG | 0.447294 | 2.2:+64898892 | None:intergenic |
GGGATTTGAAATTATAGAGT+TGG | 0.453939 | 2.2:-64902295 | MS.gene96209:CDS |
CAGGTATGGCTTTATAACAT+TGG | 0.454190 | 2.2:-64899366 | MS.gene96209:CDS |
TGCGTTTCCAAGACGATTTG+TGG | 0.461066 | 2.2:-64905791 | MS.gene96209:CDS |
TTTGAAACCACAAATCGTCT+TGG | 0.462121 | 2.2:+64905784 | None:intergenic |
CGCAAGATGACTCGTATGCC+TGG | 0.469287 | 2.2:+64903073 | None:intergenic |
ATTAGGTAGTCTTGTGTACA+GGG | 0.485417 | 2.2:-64899343 | MS.gene96209:CDS |
AACGAGGTGTGATGGATTCA+GGG | 0.489513 | 2.2:-64905722 | MS.gene96209:CDS |
GATAATAGCACGCGGATCAT+CGG | 0.490054 | 2.2:+64902090 | None:intergenic |
CACTTTACAACGAGGTGTGA+TGG | 0.490811 | 2.2:-64905730 | MS.gene96209:CDS |
TGTGATGGACACTAAACTCT+TGG | 0.491324 | 2.2:+64905751 | None:intergenic |
GATTTGTGGTTTCAAACTAA+AGG | 0.495692 | 2.2:-64905777 | MS.gene96209:CDS |
AATTTGAGAAGGGAACTTGT+AGG | 0.496423 | 2.2:+64898944 | None:intergenic |
GAGAAGATTTGTGATGGATC+TGG | 0.505465 | 2.2:-64899318 | MS.gene96209:CDS |
GTTATGCAACTTACCTCTCT+CGG | 0.514324 | 2.2:+64899974 | None:intergenic |
AGAGTTTGACAATCAGGAAA+AGG | 0.519904 | 2.2:-64898915 | MS.gene96209:CDS |
AGTCTATTATGGTGTTGACA+TGG | 0.533086 | 2.2:-64899068 | MS.gene96209:CDS |
GTGAGGATCCATCTTGCAGC+AGG | 0.534910 | 2.2:-64899296 | MS.gene96209:intron |
GTCTATTATGGTGTTGACAT+GGG | 0.539346 | 2.2:-64899067 | MS.gene96209:CDS |
CATTTGCAGAACTCAAGACC+AGG | 0.543038 | 2.2:-64903091 | MS.gene96209:intron |
CAACACCATAATAGACTAAG+TGG | 0.543275 | 2.2:+64899074 | None:intergenic |
ACATTCTATGGGCGGAGCAA+TGG | 0.544513 | 2.2:-64901103 | MS.gene96209:CDS |
TTACCTCTCTCGGAAAGTGC+TGG | 0.547597 | 2.2:+64899984 | None:intergenic |
TTGACTAACCTGCTGCAAGA+TGG | 0.553754 | 2.2:+64899288 | None:intergenic |
ACTCTCTACTCAATTTGAGA+AGG | 0.553988 | 2.2:+64898933 | None:intergenic |
CTCTCTACTCAATTTGAGAA+GGG | 0.557931 | 2.2:+64898934 | None:intergenic |
TATCATGGTCATTTGTAACT+CGG | 0.558491 | 2.2:+64900056 | None:intergenic |
TCCAGATATGGACGATGCAA+TGG | 0.561000 | 2.2:-64901316 | MS.gene96209:intron |
CGTCTTGGAAACGCATGCAA+CGG | 0.561212 | 2.2:+64905799 | None:intergenic |
ACTTGGACGTGCTCTAGATG+TGG | 0.563135 | 2.2:-64902467 | MS.gene96209:CDS |
GGACAACCACGTATTGGGAA+TGG | 0.564280 | 2.2:-64900121 | MS.gene96209:CDS |
AGGGTTGAGAAGATTTGTGA+TGG | 0.578073 | 2.2:-64899324 | MS.gene96209:CDS |
GCAAATGGGGAACAATATCA+TGG | 0.581870 | 2.2:+64900041 | None:intergenic |
GCTATTATCATTGCATTCAG+AGG | 0.582162 | 2.2:-64902076 | MS.gene96209:CDS |
TCAACAGCCCCTAAAACTGC+AGG | 0.585625 | 2.2:+64901171 | None:intergenic |
CACCTCGTTGTAAAGTGTGA+TGG | 0.589818 | 2.2:+64905736 | None:intergenic |
GTTGTCCAAATGTCATAACC+TGG | 0.593290 | 2.2:+64900137 | None:intergenic |
TAATAGTATGGAGGCAAATG+GGG | 0.594902 | 2.2:+64900028 | None:intergenic |
TTAATATCATGAAATATGGA+AGG | 0.607491 | 2.2:-64905845 | None:intergenic |
ATAGCGTTAGGACATTCTAT+GGG | 0.614505 | 2.2:-64901114 | MS.gene96209:CDS |
ATACCAGCACTTTCCGAGAG+AGG | 0.625717 | 2.2:-64899987 | MS.gene96209:intron |
GGTAAATAGTAATAGTATGG+AGG | 0.628678 | 2.2:+64900019 | None:intergenic |
TTATGGTGTTGACATGGGAT+CGG | 0.634783 | 2.2:-64899062 | MS.gene96209:CDS |
AGGTGTGATGGATTCAGGGA+TGG | 0.641770 | 2.2:-64905718 | MS.gene96209:intron |
TAGATGTGGCGACTTGACCA+AGG | 0.642125 | 2.2:-64902453 | MS.gene96209:intron |
AGCAGCACCAGAGATTCAAG+AGG | 0.642364 | 2.2:-64898989 | MS.gene96209:CDS |
ATTAGTGGAATATGCTTCTG+CGG | 0.652645 | 2.2:-64903024 | MS.gene96209:intron |
AAGTGCTGGTATGTCTTCTG+TGG | 0.655421 | 2.2:+64899998 | None:intergenic |
GCGTTAGGACATTCTATGGG+CGG | 0.665707 | 2.2:-64901111 | MS.gene96209:CDS |
AAAACACCATTCCCAATACG+TGG | 0.686180 | 2.2:+64900115 | None:intergenic |
GATTTGTGATGGATCTGGTG+AGG | 0.704710 | 2.2:-64899313 | MS.gene96209:CDS |
TCAGAGGAACTAATGAACAC+AGG | 0.707900 | 2.2:-64902060 | MS.gene96209:intron |
CATTCTCTACAGGTACATCG+TGG | 0.720950 | 2.2:-64901228 | MS.gene96209:intron |
GTCCATCACACTTTACAACG+AGG | 0.776997 | 2.2:-64905738 | MS.gene96209:CDS |
AATGCAATGATAATAGCACG+CGG | 0.784321 | 2.2:+64902082 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 64898898 | 64905859 | 64898898 | ID=MS.gene96209 |
chr2.2 | mRNA | 64898898 | 64905859 | 64898898 | ID=MS.gene96209.t1;Parent=MS.gene96209 |
chr2.2 | exon | 64905719 | 64905859 | 64905719 | ID=MS.gene96209.t1.exon1;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64905719 | 64905859 | 64905719 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64905055 | 64905073 | 64905055 | ID=MS.gene96209.t1.exon2;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64905055 | 64905073 | 64905055 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64904180 | 64904188 | 64904180 | ID=MS.gene96209.t1.exon3;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64904180 | 64904188 | 64904180 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64903025 | 64903104 | 64903025 | ID=MS.gene96209.t1.exon4;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64903025 | 64903104 | 64903025 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64902454 | 64902519 | 64902454 | ID=MS.gene96209.t1.exon5;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64902454 | 64902519 | 64902454 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64902269 | 64902316 | 64902269 | ID=MS.gene96209.t1.exon6;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64902269 | 64902316 | 64902269 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64902061 | 64902128 | 64902061 | ID=MS.gene96209.t1.exon7;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64902061 | 64902128 | 64902061 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64901317 | 64901389 | 64901317 | ID=MS.gene96209.t1.exon8;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64901317 | 64901389 | 64901317 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64901077 | 64901238 | 64901077 | ID=MS.gene96209.t1.exon9;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64901077 | 64901238 | 64901077 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64899988 | 64900182 | 64899988 | ID=MS.gene96209.t1.exon10;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64899988 | 64900182 | 64899988 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64899297 | 64899385 | 64899297 | ID=MS.gene96209.t1.exon11;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64899297 | 64899385 | 64899297 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
chr2.2 | exon | 64898898 | 64899123 | 64898898 | ID=MS.gene96209.t1.exon12;Parent=MS.gene96209.t1 |
chr2.2 | CDS | 64898898 | 64899123 | 64898898 | ID=cds.MS.gene96209.t1;Parent=MS.gene96209.t1 |
Gene Sequence |
Protein sequence |