Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33594.t1 | XP_003589582.1 | 98 | 696 | 14 | 0 | 1 | 696 | 1 | 696 | 0.00E+00 | 1373.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33594.t1 | Q9CAP8 | 72.0 | 696 | 189 | 4 | 1 | 695 | 1 | 691 | 3.2e-300 | 1031.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33594.t1 | G7I8F2 | 98.0 | 696 | 14 | 0 | 1 | 696 | 1 | 696 | 0.0e+00 | 1373.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene33594 | 0.801658 | 8.11E-49 | -1.69E-46 |
MS.gene049369 | MS.gene33594 | 0.810382 | 1.18E-50 | -1.69E-46 |
MS.gene049614 | MS.gene33594 | 0.820771 | 5.75E-53 | -1.69E-46 |
MS.gene050333 | MS.gene33594 | 0.807517 | 4.86E-50 | -1.69E-46 |
MS.gene050444 | MS.gene33594 | 0.811899 | 5.56E-51 | -1.69E-46 |
MS.gene050767 | MS.gene33594 | 0.82792 | 1.20E-54 | -1.69E-46 |
MS.gene050770 | MS.gene33594 | 0.829811 | 4.18E-55 | -1.69E-46 |
MS.gene05079 | MS.gene33594 | -0.803781 | 2.96E-49 | -1.69E-46 |
MS.gene051228 | MS.gene33594 | 0.849189 | 3.79E-60 | -1.69E-46 |
MS.gene051810 | MS.gene33594 | 0.810583 | 1.07E-50 | -1.69E-46 |
MS.gene052271 | MS.gene33594 | 0.82912 | 6.15E-55 | -1.69E-46 |
MS.gene052290 | MS.gene33594 | 0.824789 | 6.67E-54 | -1.69E-46 |
MS.gene052379 | MS.gene33594 | 0.817671 | 2.92E-52 | -1.69E-46 |
MS.gene052805 | MS.gene33594 | -0.814395 | 1.57E-51 | -1.69E-46 |
MS.gene053009 | MS.gene33594 | 0.819687 | 1.02E-52 | -1.69E-46 |
MS.gene053384 | MS.gene33594 | 0.846132 | 2.63E-59 | -1.69E-46 |
MS.gene054376 | MS.gene33594 | 0.806299 | 8.80E-50 | -1.69E-46 |
MS.gene054802 | MS.gene33594 | 0.804958 | 1.68E-49 | -1.69E-46 |
MS.gene054803 | MS.gene33594 | 0.808963 | 2.39E-50 | -1.69E-46 |
MS.gene054804 | MS.gene33594 | 0.808091 | 3.67E-50 | -1.69E-46 |
MS.gene055254 | MS.gene33594 | 0.851189 | 1.04E-60 | -1.69E-46 |
MS.gene055397 | MS.gene33594 | 0.848719 | 5.12E-60 | -1.69E-46 |
MS.gene055499 | MS.gene33594 | 0.810119 | 1.35E-50 | -1.69E-46 |
MS.gene055636 | MS.gene33594 | 0.822112 | 2.82E-53 | -1.69E-46 |
MS.gene055638 | MS.gene33594 | 0.820493 | 6.66E-53 | -1.69E-46 |
MS.gene05592 | MS.gene33594 | 0.806266 | 8.94E-50 | -1.69E-46 |
MS.gene056449 | MS.gene33594 | 0.807422 | 5.09E-50 | -1.69E-46 |
MS.gene056609 | MS.gene33594 | 0.853052 | 3.08E-61 | -1.69E-46 |
MS.gene056903 | MS.gene33594 | 0.830937 | 2.22E-55 | -1.69E-46 |
MS.gene057129 | MS.gene33594 | 0.821681 | 3.55E-53 | -1.69E-46 |
MS.gene057246 | MS.gene33594 | 0.800143 | 1.65E-48 | -1.69E-46 |
MS.gene058588 | MS.gene33594 | 0.810241 | 1.27E-50 | -1.69E-46 |
MS.gene058903 | MS.gene33594 | 0.817249 | 3.64E-52 | -1.69E-46 |
MS.gene059029 | MS.gene33594 | 0.802875 | 4.56E-49 | -1.69E-46 |
MS.gene05986 | MS.gene33594 | 0.843078 | 1.75E-58 | -1.69E-46 |
MS.gene059960 | MS.gene33594 | 0.820279 | 7.46E-53 | -1.69E-46 |
MS.gene059974 | MS.gene33594 | 0.801937 | 7.11E-49 | -1.69E-46 |
MS.gene060818 | MS.gene33594 | 0.847604 | 1.04E-59 | -1.69E-46 |
MS.gene061041 | MS.gene33594 | 0.80963 | 1.72E-50 | -1.69E-46 |
MS.gene061200 | MS.gene33594 | 0.832525 | 9.00E-56 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33594.t1 | MTR_1g030290 | 97.989 | 696 | 14 | 0 | 1 | 696 | 1 | 696 | 0.0 | 1403 |
MS.gene33594.t1 | MTR_3g087980 | 76.835 | 695 | 159 | 2 | 1 | 695 | 1 | 693 | 0.0 | 1121 |
MS.gene33594.t1 | MTR_3g082660 | 62.734 | 695 | 253 | 4 | 5 | 695 | 35 | 727 | 0.0 | 899 |
MS.gene33594.t1 | MTR_1g104810 | 34.105 | 648 | 376 | 11 | 57 | 695 | 80 | 685 | 5.68e-116 | 364 |
MS.gene33594.t1 | MTR_1g104810 | 34.494 | 603 | 359 | 9 | 102 | 695 | 43 | 618 | 5.35e-115 | 359 |
MS.gene33594.t1 | MTR_7g109830 | 33.079 | 656 | 377 | 15 | 57 | 694 | 41 | 652 | 1.09e-102 | 328 |
MS.gene33594.t1 | MTR_5g009350 | 33.282 | 652 | 387 | 15 | 56 | 696 | 42 | 656 | 1.34e-100 | 323 |
MS.gene33594.t1 | MTR_5g009350 | 33.437 | 643 | 380 | 15 | 56 | 687 | 42 | 647 | 1.31e-99 | 320 |
MS.gene33594.t1 | MTR_1g086600 | 32.713 | 645 | 390 | 13 | 62 | 696 | 68 | 678 | 1.25e-98 | 318 |
MS.gene33594.t1 | MTR_5g009360 | 32.822 | 652 | 390 | 15 | 56 | 696 | 42 | 656 | 1.10e-97 | 315 |
MS.gene33594.t1 | MTR_8g099420 | 31.003 | 658 | 396 | 13 | 55 | 696 | 42 | 657 | 1.39e-96 | 312 |
MS.gene33594.t1 | MTR_4g068670 | 31.960 | 607 | 370 | 14 | 103 | 694 | 73 | 651 | 5.44e-96 | 310 |
MS.gene33594.t1 | MTR_1g034360 | 31.097 | 611 | 371 | 15 | 103 | 694 | 74 | 653 | 2.50e-88 | 290 |
MS.gene33594.t1 | MTR_5g009350 | 33.512 | 561 | 323 | 15 | 56 | 605 | 42 | 563 | 2.87e-84 | 277 |
MS.gene33594.t1 | MTR_5g009350 | 33.513 | 558 | 324 | 14 | 56 | 602 | 42 | 563 | 2.48e-83 | 275 |
MS.gene33594.t1 | MTR_5g009360 | 35.000 | 540 | 314 | 14 | 168 | 696 | 17 | 530 | 1.17e-81 | 269 |
MS.gene33594.t1 | MTR_3g084450 | 26.308 | 650 | 379 | 17 | 108 | 694 | 107 | 719 | 2.72e-45 | 173 |
MS.gene33594.t1 | MTR_3g084470 | 25.966 | 647 | 382 | 21 | 108 | 694 | 105 | 714 | 1.52e-41 | 162 |
MS.gene33594.t1 | MTR_8g083170 | 25.811 | 647 | 388 | 19 | 108 | 694 | 109 | 723 | 1.94e-37 | 149 |
MS.gene33594.t1 | MTR_3g084450 | 27.677 | 495 | 271 | 15 | 250 | 694 | 54 | 511 | 1.97e-35 | 141 |
MS.gene33594.t1 | MTR_4g077900 | 30.058 | 346 | 160 | 16 | 250 | 581 | 121 | 398 | 1.96e-23 | 104 |
MS.gene33594.t1 | MTR_5g027500 | 26.680 | 491 | 254 | 23 | 117 | 581 | 78 | 488 | 2.22e-23 | 105 |
MS.gene33594.t1 | MTR_5g027480 | 28.571 | 350 | 170 | 16 | 250 | 586 | 198 | 480 | 2.00e-21 | 99.0 |
MS.gene33594.t1 | MTR_4g128337 | 24.602 | 565 | 331 | 16 | 106 | 650 | 57 | 546 | 1.56e-18 | 90.1 |
MS.gene33594.t1 | MTR_1g026310 | 27.941 | 340 | 177 | 13 | 250 | 583 | 205 | 482 | 2.49e-18 | 89.4 |
MS.gene33594.t1 | MTR_8g039720 | 26.549 | 339 | 183 | 10 | 250 | 583 | 208 | 485 | 5.32e-17 | 85.1 |
MS.gene33594.t1 | MTR_3g035130 | 22.500 | 480 | 293 | 12 | 103 | 578 | 28 | 432 | 3.08e-16 | 82.4 |
MS.gene33594.t1 | MTR_3g035130 | 22.500 | 480 | 293 | 12 | 103 | 578 | 28 | 432 | 3.94e-16 | 82.4 |
MS.gene33594.t1 | MTR_5g076220 | 34.161 | 161 | 89 | 5 | 443 | 592 | 322 | 476 | 4.88e-14 | 75.9 |
MS.gene33594.t1 | MTR_5g007640 | 33.714 | 175 | 90 | 8 | 421 | 583 | 349 | 509 | 5.25e-14 | 75.9 |
MS.gene33594.t1 | MTR_4g057730 | 30.841 | 214 | 122 | 9 | 421 | 619 | 307 | 509 | 8.73e-14 | 75.1 |
MS.gene33594.t1 | MTR_2g095510 | 32.558 | 172 | 93 | 9 | 421 | 583 | 304 | 461 | 1.09e-13 | 74.7 |
MS.gene33594.t1 | MTR_1g063110 | 28.241 | 216 | 127 | 9 | 421 | 619 | 311 | 515 | 1.17e-13 | 74.7 |
MS.gene33594.t1 | MTR_4g057730 | 33.333 | 171 | 97 | 7 | 421 | 585 | 307 | 466 | 1.74e-13 | 73.9 |
MS.gene33594.t1 | MTR_2g105570 | 27.869 | 244 | 152 | 8 | 421 | 648 | 310 | 545 | 4.20e-13 | 72.8 |
MS.gene33594.t1 | MTR_2g095510 | 33.553 | 152 | 79 | 8 | 421 | 563 | 304 | 442 | 7.14e-13 | 71.6 |
MS.gene33594.t1 | MTR_4g057730 | 34.899 | 149 | 81 | 6 | 421 | 563 | 307 | 445 | 1.94e-12 | 70.5 |
MS.gene33594.t1 | MTR_1g063120 | 30.601 | 183 | 110 | 7 | 412 | 585 | 302 | 476 | 2.41e-12 | 70.5 |
MS.gene33594.t1 | MTR_5g076240 | 35.429 | 175 | 88 | 9 | 424 | 584 | 304 | 467 | 2.78e-12 | 70.1 |
MS.gene33594.t1 | MTR_3g088870 | 36.242 | 149 | 79 | 7 | 421 | 563 | 323 | 461 | 1.06e-11 | 68.6 |
MS.gene33594.t1 | MTR_0161s0050 | 34.161 | 161 | 89 | 6 | 443 | 592 | 324 | 478 | 1.22e-11 | 68.2 |
MS.gene33594.t1 | MTR_5g076200 | 40.952 | 105 | 56 | 3 | 488 | 592 | 378 | 476 | 1.25e-11 | 68.2 |
MS.gene33594.t1 | MTR_3g064420 | 32.948 | 173 | 94 | 6 | 424 | 583 | 306 | 469 | 1.33e-11 | 68.2 |
MS.gene33594.t1 | MTR_1g090737 | 29.940 | 167 | 105 | 6 | 421 | 583 | 330 | 488 | 3.67e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33594.t1 | AT1G77590 | 71.983 | 696 | 189 | 4 | 1 | 695 | 1 | 691 | 0.0 | 1055 |
MS.gene33594.t1 | AT1G77590 | 78.611 | 547 | 114 | 1 | 149 | 695 | 2 | 545 | 0.0 | 913 |
MS.gene33594.t1 | AT2G04350 | 62.647 | 680 | 247 | 4 | 20 | 695 | 44 | 720 | 0.0 | 884 |
MS.gene33594.t1 | AT2G04350 | 62.647 | 680 | 247 | 4 | 20 | 695 | 44 | 720 | 0.0 | 884 |
MS.gene33594.t1 | AT5G27600 | 34.675 | 646 | 375 | 13 | 57 | 695 | 83 | 688 | 1.43e-122 | 381 |
MS.gene33594.t1 | AT3G05970 | 34.938 | 644 | 374 | 12 | 57 | 694 | 83 | 687 | 4.92e-115 | 362 |
MS.gene33594.t1 | AT2G47240 | 32.477 | 662 | 384 | 15 | 48 | 694 | 39 | 652 | 1.91e-97 | 314 |
MS.gene33594.t1 | AT2G47240 | 32.477 | 662 | 384 | 15 | 48 | 694 | 39 | 652 | 1.91e-97 | 314 |
MS.gene33594.t1 | AT2G47240 | 32.477 | 662 | 384 | 15 | 48 | 694 | 39 | 652 | 1.91e-97 | 314 |
MS.gene33594.t1 | AT2G47240 | 33.169 | 609 | 366 | 12 | 101 | 694 | 11 | 593 | 2.81e-96 | 310 |
MS.gene33594.t1 | AT4G11030 | 30.792 | 669 | 409 | 15 | 40 | 696 | 31 | 657 | 1.30e-95 | 310 |
MS.gene33594.t1 | AT1G49430 | 31.173 | 648 | 394 | 14 | 62 | 695 | 49 | 658 | 3.29e-95 | 308 |
MS.gene33594.t1 | AT4G23850 | 31.627 | 664 | 398 | 16 | 46 | 696 | 37 | 657 | 1.89e-94 | 306 |
MS.gene33594.t1 | AT1G64400 | 31.008 | 645 | 395 | 14 | 62 | 694 | 49 | 655 | 4.13e-94 | 306 |
MS.gene33594.t1 | AT1G49430 | 30.894 | 492 | 288 | 14 | 62 | 539 | 49 | 502 | 4.14e-63 | 219 |
MS.gene33594.t1 | AT3G23790 | 26.365 | 641 | 388 | 18 | 108 | 694 | 111 | 721 | 1.24e-44 | 171 |
MS.gene33594.t1 | AT4G14070 | 25.387 | 646 | 379 | 18 | 108 | 695 | 127 | 727 | 1.55e-42 | 165 |
MS.gene33594.t1 | AT4G19010 | 31.443 | 388 | 185 | 19 | 250 | 619 | 205 | 529 | 1.53e-28 | 121 |
MS.gene33594.t1 | AT1G20500 | 26.570 | 414 | 219 | 15 | 250 | 643 | 198 | 546 | 1.39e-21 | 99.8 |
MS.gene33594.t1 | AT1G20510 | 28.640 | 419 | 203 | 18 | 228 | 619 | 162 | 511 | 2.18e-20 | 95.9 |
MS.gene33594.t1 | AT1G20510 | 29.255 | 376 | 179 | 16 | 228 | 585 | 162 | 468 | 2.35e-19 | 92.0 |
MS.gene33594.t1 | AT1G65060 | 24.897 | 486 | 268 | 17 | 109 | 578 | 77 | 481 | 5.24e-19 | 91.7 |
MS.gene33594.t1 | AT1G65060 | 24.841 | 471 | 258 | 17 | 109 | 563 | 77 | 467 | 1.58e-18 | 89.7 |
MS.gene33594.t1 | AT1G20510 | 29.379 | 354 | 164 | 15 | 228 | 563 | 162 | 447 | 1.04e-17 | 87.0 |
MS.gene33594.t1 | AT1G51680 | 26.226 | 469 | 247 | 21 | 206 | 648 | 162 | 557 | 2.71e-17 | 86.3 |
MS.gene33594.t1 | AT5G16370 | 29.508 | 366 | 158 | 14 | 250 | 592 | 186 | 474 | 5.60e-17 | 85.1 |
MS.gene33594.t1 | AT1G51680 | 27.612 | 402 | 201 | 19 | 206 | 590 | 162 | 490 | 1.20e-16 | 84.0 |
MS.gene33594.t1 | AT1G51680 | 27.612 | 402 | 201 | 19 | 206 | 590 | 162 | 490 | 2.39e-16 | 82.8 |
MS.gene33594.t1 | AT4G05160 | 28.629 | 248 | 138 | 11 | 421 | 644 | 309 | 541 | 5.73e-16 | 82.0 |
MS.gene33594.t1 | AT5G16340 | 29.014 | 355 | 174 | 13 | 250 | 592 | 186 | 474 | 1.39e-15 | 80.9 |
MS.gene33594.t1 | AT3G48990 | 29.670 | 273 | 149 | 11 | 420 | 689 | 281 | 513 | 2.44e-14 | 76.6 |
MS.gene33594.t1 | AT1G75960 | 34.715 | 193 | 95 | 7 | 417 | 592 | 296 | 474 | 4.99e-14 | 75.9 |
MS.gene33594.t1 | AT1G21540 | 34.161 | 161 | 90 | 5 | 443 | 592 | 322 | 477 | 7.11e-14 | 75.5 |
MS.gene33594.t1 | AT1G20480 | 31.250 | 208 | 123 | 8 | 424 | 619 | 333 | 532 | 2.73e-13 | 73.6 |
MS.gene33594.t1 | AT1G77240 | 45.055 | 91 | 45 | 2 | 502 | 592 | 390 | 475 | 4.74e-13 | 72.8 |
MS.gene33594.t1 | AT3G21230 | 27.160 | 243 | 155 | 8 | 421 | 649 | 331 | 565 | 6.86e-13 | 72.4 |
MS.gene33594.t1 | AT3G21240 | 27.711 | 249 | 145 | 11 | 421 | 648 | 316 | 550 | 9.46e-13 | 71.6 |
MS.gene33594.t1 | AT1G21530 | 29.648 | 199 | 120 | 7 | 406 | 592 | 284 | 474 | 2.52e-12 | 70.5 |
MS.gene33594.t1 | AT1G21530 | 41.758 | 91 | 48 | 2 | 502 | 592 | 387 | 472 | 2.57e-12 | 70.5 |
MS.gene33594.t1 | AT3G21240 | 31.319 | 182 | 99 | 9 | 421 | 590 | 316 | 483 | 1.05e-11 | 68.2 |
MS.gene33594.t1 | AT3G21240 | 31.319 | 182 | 99 | 9 | 421 | 590 | 316 | 483 | 1.05e-11 | 68.2 |
MS.gene33594.t1 | AT3G21230 | 31.176 | 170 | 104 | 6 | 421 | 585 | 331 | 492 | 1.20e-11 | 68.2 |
MS.gene33594.t1 | AT3G21230 | 31.176 | 170 | 104 | 6 | 421 | 585 | 331 | 492 | 1.52e-11 | 67.8 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGGAACTCCGCGGCGTTTA+GGG | 0.178449 | 1.1:+15943166 | None:intergenic |
TCTGGCGGTGCTCCCCTTTC+TGG | 0.196224 | 1.1:-15939854 | MS.gene33594:CDS |
TGTGTTGATGCCTACTTTAT+TGG | 0.196852 | 1.1:-15940529 | MS.gene33594:CDS |
TCTTCCTTGCTCATTTATTA+AGG | 0.207102 | 1.1:-15938640 | MS.gene33594:intron |
TGTTCCAAAACTTGAGAAAA+AGG | 0.224626 | 1.1:-15940828 | MS.gene33594:CDS |
TGAATGGTTCCTTGCTCTTC+AGG | 0.232308 | 1.1:-15942803 | MS.gene33594:intron |
TTCTGCTTCAGGGTTGTTTC+AGG | 0.236650 | 1.1:-15941823 | MS.gene33594:intron |
ACTGGAACTCCGCGGCGTTT+AGG | 0.240999 | 1.1:+15943165 | None:intergenic |
AATCAAGGAATTCCTTATTC+AGG | 0.263628 | 1.1:-15935150 | MS.gene33594:CDS |
TGATCGTCCGCGGAGTTTAC+TGG | 0.266065 | 1.1:+15943147 | None:intergenic |
GGGGATTGGAGAAGGCTCTC+TGG | 0.278772 | 1.1:-15939937 | MS.gene33594:CDS |
AGGAGGTTGAAAGCAGTTAA+TGG | 0.295468 | 1.1:-15939977 | MS.gene33594:CDS |
GAAAGCAATTTAATTCTTGC+TGG | 0.303529 | 1.1:+15934453 | None:intergenic |
AGAAATCGTTGATCGTAAAA+AGG | 0.325053 | 1.1:-15935854 | MS.gene33594:CDS |
AGACCATATCCTTGACCTAT+TGG | 0.336719 | 1.1:+15938732 | None:intergenic |
CCTCGGGGCGAAATTGTAAT+TGG | 0.337884 | 1.1:-15938115 | MS.gene33594:CDS |
ATAACTTCAGAAGTTCTTCC+TGG | 0.348024 | 1.1:+15934355 | None:intergenic |
TGCTAGTGGTTTGGCTGTGT+TGG | 0.348285 | 1.1:-15942872 | MS.gene33594:CDS |
GCAGTTAATGGAAGCTGGTT+TGG | 0.349164 | 1.1:-15939965 | MS.gene33594:CDS |
TGTAACTATGTATGCATCAT+TGG | 0.358738 | 1.1:-15941786 | MS.gene33594:CDS |
TGCGACTAGGTTGATGAAAA+AGG | 0.360471 | 1.1:-15935931 | MS.gene33594:intron |
TCTGAAGTTATACGCTTCAT+AGG | 0.361791 | 1.1:-15934343 | None:intergenic |
TTAGTTAAATATCCACCTTC+AGG | 0.376720 | 1.1:+15938151 | None:intergenic |
GGGATTGGAGAAGGCTCTCT+GGG | 0.383295 | 1.1:-15939936 | MS.gene33594:CDS |
ATGGAAGCTGGTTTGGAGCC+TGG | 0.384214 | 1.1:-15939958 | MS.gene33594:CDS |
ATGGAAAGGATGAGAGGGTT+GGG | 0.386145 | 1.1:-15942846 | MS.gene33594:CDS |
GTTGGGATACCTATAGGATA+TGG | 0.388445 | 1.1:-15940615 | MS.gene33594:CDS |
AAAACACTTATAAATATTAG+TGG | 0.388638 | 1.1:-15941562 | MS.gene33594:CDS |
CTCAGTCCACATTGGAAGAA+TGG | 0.398978 | 1.1:-15935179 | MS.gene33594:CDS |
GCTAGTGGTTTGGCTGTGTT+GGG | 0.401073 | 1.1:-15942871 | MS.gene33594:CDS |
GATCCATGGACACCCGAGTC+TGG | 0.402724 | 1.1:-15934429 | MS.gene33594:CDS |
TGGAAGCTGGTTTGGAGCCT+GGG | 0.403407 | 1.1:-15939957 | MS.gene33594:CDS |
CAAGTGCCACACAATAACTA+TGG | 0.408624 | 1.1:+15935211 | None:intergenic |
TAGGGTGGTTAGTGCGGAAC+AGG | 0.411432 | 1.1:+15943184 | None:intergenic |
GCATGGAGAGTATGTTTCCT+TGG | 0.413823 | 1.1:-15935815 | MS.gene33594:CDS |
GGAAGCAAAGAAAGCACGTT+TGG | 0.414955 | 1.1:-15934490 | MS.gene33594:CDS |
TAATGACTCGCCAATGCCTC+GGG | 0.421247 | 1.1:-15938131 | MS.gene33594:CDS |
ATACCTCAGCTGCAAGTTCA+AGG | 0.422076 | 1.1:+15940771 | None:intergenic |
CTGCTGAGTATCACCAGAAA+GGG | 0.422987 | 1.1:+15939841 | None:intergenic |
TTGAATTGGGTGAGTATGAT+TGG | 0.427641 | 1.1:-15942933 | MS.gene33594:CDS |
AAGATAAAGAAAGGAACAAA+GGG | 0.428594 | 1.1:-15940561 | MS.gene33594:CDS |
TCAGTCCACATTGGAAGAAT+GGG | 0.429822 | 1.1:-15935178 | MS.gene33594:CDS |
TTAAATTGCTTTCTGATCCA+TGG | 0.429985 | 1.1:-15934443 | MS.gene33594:CDS |
AGTGGTTGTTTCGAAGGAAA+TGG | 0.431521 | 1.1:-15942992 | MS.gene33594:CDS |
CTGGTTTGGAGCCTGGGGAT+TGG | 0.432080 | 1.1:-15939951 | MS.gene33594:CDS |
TGGAGCCTGGGGATTGGAGA+AGG | 0.435820 | 1.1:-15939945 | MS.gene33594:CDS |
TGTTAGGTTTGCTAGTGGTT+TGG | 0.437204 | 1.1:-15942881 | MS.gene33594:CDS |
AACATTATATTGTCCACATA+GGG | 0.443303 | 1.1:+15935249 | None:intergenic |
ATGATAACTGCAACATCAGC+TGG | 0.443496 | 1.1:+15941391 | None:intergenic |
TTGCTGATACTAGGGTTGAA+TGG | 0.455217 | 1.1:-15942819 | MS.gene33594:CDS |
ACAATTTCGCCCCGAGGCAT+TGG | 0.456817 | 1.1:+15938121 | None:intergenic |
GGCCGTCAGAAAGACTTTCC+AGG | 0.457546 | 1.1:-15934373 | MS.gene33594:CDS |
CGCATCCGTTTCATACTGTC+TGG | 0.460106 | 1.1:-15939872 | MS.gene33594:CDS |
AAAGGAGATCCATATCCTAT+AGG | 0.461389 | 1.1:+15940606 | None:intergenic |
CATGGAAAGGATGAGAGGGT+TGG | 0.461442 | 1.1:-15942847 | MS.gene33594:CDS |
CATGGAGAGTATGTTTCCTT+GGG | 0.466180 | 1.1:-15935814 | MS.gene33594:CDS |
TGCTTTCAACCTCCTCTCAT+AGG | 0.467574 | 1.1:+15939985 | None:intergenic |
GCAGCAGTTGGGATACCTAT+AGG | 0.472722 | 1.1:-15940621 | MS.gene33594:CDS |
ATGTATACAAGTGGAAGTAC+TGG | 0.474903 | 1.1:-15941370 | MS.gene33594:CDS |
CAGTTCATCAATATCTGTCT+TGG | 0.475583 | 1.1:-15939821 | MS.gene33594:CDS |
AGAGGTAAATCAGCATCAAC+AGG | 0.476714 | 1.1:+15941415 | None:intergenic |
CCATCTGATGCCTCATCTGT+TGG | 0.477457 | 1.1:-15941493 | MS.gene33594:CDS |
AAGTAACCAAGAGTGACATT+TGG | 0.478964 | 1.1:+15938088 | None:intergenic |
CTTCGCCGGTGGAGACGGCA+TGG | 0.479046 | 1.1:-15943092 | MS.gene33594:CDS |
TGAAAGCAGTTAATGGAAGC+TGG | 0.480204 | 1.1:-15939970 | MS.gene33594:CDS |
GAAGAATGGGCTTCAAATCA+AGG | 0.482234 | 1.1:-15935165 | MS.gene33594:CDS |
GTAACTATGTATGCATCATT+GGG | 0.483827 | 1.1:-15941785 | MS.gene33594:CDS |
AACAGGAGAGTTGCGAGGAT+GGG | 0.487307 | 1.1:+15943201 | None:intergenic |
TAGAATTTGATGGCAGCAGT+TGG | 0.491226 | 1.1:-15940633 | MS.gene33594:CDS |
CCAATGTAGGTGAATGCAAC+GGG | 0.492645 | 1.1:-15940037 | MS.gene33594:intron |
CCTCATCTGTTGGACATGGC+TGG | 0.496791 | 1.1:-15941483 | MS.gene33594:CDS |
GAACAGGAGAGTTGCGAGGA+TGG | 0.496821 | 1.1:+15943200 | None:intergenic |
CAACATTATATTGTCCACAT+AGG | 0.498047 | 1.1:+15935248 | None:intergenic |
CGAACACGGTCAAGAATTGC+TGG | 0.499967 | 1.1:+15940498 | None:intergenic |
AAGCCAGACTCGGGTGTCCA+TGG | 0.500048 | 1.1:+15934426 | None:intergenic |
GGTGGTCCAAATGTCACTCT+TGG | 0.500524 | 1.1:-15938094 | MS.gene33594:CDS |
TGGTTCTACACTGGTGACAT+AGG | 0.500937 | 1.1:-15935901 | MS.gene33594:CDS |
TTTATGTCACTCATTGAATG+AGG | 0.503431 | 1.1:-15941753 | MS.gene33594:intron |
GAGTATGATGGTGACAATGT+AGG | 0.503858 | 1.1:+15943224 | None:intergenic |
TTCGCAGATGTTAAGCGACT+TGG | 0.504720 | 1.1:-15941448 | MS.gene33594:CDS |
CTAATGACTCGCCAATGCCT+CGG | 0.505287 | 1.1:-15938132 | MS.gene33594:CDS |
TTAATAAATGAGCAAGGAAG+AGG | 0.507013 | 1.1:+15938642 | None:intergenic |
GATGTATCTGTGAGGGTCAA+AGG | 0.507460 | 1.1:+15940588 | None:intergenic |
GTCATTTCCAGTGCTCCAAT+AGG | 0.507815 | 1.1:-15938747 | MS.gene33594:intron |
ATTTGCTTCGCCGGTGGAGA+CGG | 0.509942 | 1.1:-15943097 | MS.gene33594:CDS |
GCTCCAATAGGTCAAGGATA+TGG | 0.512887 | 1.1:-15938735 | MS.gene33594:CDS |
AGTATGATGGTGACAATGTA+GGG | 0.514432 | 1.1:+15943225 | None:intergenic |
AGTTCATCAATATCTGTCTT+GGG | 0.515096 | 1.1:-15939820 | MS.gene33594:intron |
ACAGGAGAGTTGCGAGGATG+GGG | 0.517085 | 1.1:+15943202 | None:intergenic |
GGCTGTGTTGGGACATGGAA+AGG | 0.517980 | 1.1:-15942860 | MS.gene33594:CDS |
CAAGATAAAGAAAGGAACAA+AGG | 0.518432 | 1.1:-15940562 | MS.gene33594:CDS |
TCCTTTCCATAGTTATTGTG+TGG | 0.522402 | 1.1:-15935217 | MS.gene33594:CDS |
AACAAGAGTGGTTGTTTCGA+AGG | 0.522687 | 1.1:-15942998 | MS.gene33594:CDS |
AGAATTTGATGGCAGCAGTT+GGG | 0.524314 | 1.1:-15940632 | MS.gene33594:CDS |
TTATTGTGTGGCACTTGTTG+TGG | 0.529744 | 1.1:-15935205 | MS.gene33594:CDS |
ACATCAAGCAAGATAAAGAA+AGG | 0.535370 | 1.1:-15940570 | MS.gene33594:CDS |
TTCCTGGAAAGTCTTTCTGA+CGG | 0.535805 | 1.1:+15934371 | None:intergenic |
CGGGGCGAAATTGTAATTGG+TGG | 0.536937 | 1.1:-15938112 | MS.gene33594:CDS |
GATACGTCTGTTGGCCGTGT+TGG | 0.538095 | 1.1:-15938669 | MS.gene33594:CDS |
CCTTCCCATGCCGTCTCCAC+CGG | 0.538531 | 1.1:+15943087 | None:intergenic |
GGTTTGGCTGTGTTGGGACA+TGG | 0.539640 | 1.1:-15942865 | MS.gene33594:CDS |
CCAACAGATGAGGCATCAGA+TGG | 0.541242 | 1.1:+15941493 | None:intergenic |
AGCAGTGACTAAGCCAGACT+CGG | 0.543106 | 1.1:+15934416 | None:intergenic |
GTAAACTCCGCGGACGATCA+AGG | 0.545035 | 1.1:-15943144 | MS.gene33594:CDS |
ATGGAGAAGAGTGGTGATGG+TGG | 0.547330 | 1.1:-15942973 | MS.gene33594:CDS |
ATAGGGAGGTTTCATCAAGA+TGG | 0.548115 | 1.1:-15935883 | MS.gene33594:CDS |
AGAGTATGTTTCCTTGGGAA+AGG | 0.550970 | 1.1:-15935809 | MS.gene33594:intron |
GCATACGGAGAGATTACTGT+TGG | 0.551893 | 1.1:-15943022 | MS.gene33594:CDS |
AATTGTTTGAAGAAGCATGC+AGG | 0.551968 | 1.1:-15943047 | MS.gene33594:CDS |
GAGAGCCTTCTCCAATCCCC+AGG | 0.553126 | 1.1:+15939940 | None:intergenic |
GGCGTTTAGGGTGGTTAGTG+CGG | 0.554449 | 1.1:+15943178 | None:intergenic |
TATCCTTGAACTTGCAGCTG+AGG | 0.557628 | 1.1:-15940774 | MS.gene33594:intron |
CACCGCCAGACAGTATGAAA+CGG | 0.564677 | 1.1:+15939867 | None:intergenic |
GGTTCTACACTGGTGACATA+GGG | 0.565337 | 1.1:-15935900 | MS.gene33594:CDS |
ACTGCTGAGTATCACCAGAA+AGG | 0.570535 | 1.1:+15939840 | None:intergenic |
CTTGCTTGATGTATCTGTGA+GGG | 0.571405 | 1.1:+15940581 | None:intergenic |
GGTGCATGCATCGCTAGTAA+AGG | 0.572071 | 1.1:-15935088 | MS.gene33594:intron |
TGCGAGGATGGGGAGTATGA+TGG | 0.575752 | 1.1:+15943212 | None:intergenic |
CAGAAGATTTGCTTCGCCGG+TGG | 0.575937 | 1.1:-15943103 | MS.gene33594:CDS |
CCGGTGGAGACGGCATGGGA+AGG | 0.576169 | 1.1:-15943087 | MS.gene33594:CDS |
TGGAAGTACTGGATTACCTA+AGG | 0.576756 | 1.1:-15941359 | MS.gene33594:intron |
GGTACAGCAGCCAATAAAGT+AGG | 0.578659 | 1.1:+15940519 | None:intergenic |
AGTTCAAGGATATGAGCCAT+TGG | 0.579034 | 1.1:+15940785 | None:intergenic |
TATGTATGCATCATTGGGAG+AGG | 0.582563 | 1.1:-15941780 | MS.gene33594:CDS |
AGAAGCATGCAGGAAGCATA+CGG | 0.584187 | 1.1:-15943037 | MS.gene33594:CDS |
TAGCTAATCGACTGGCCTGA+AGG | 0.584227 | 1.1:-15938166 | MS.gene33594:CDS |
GCAGTTATCATGTATACAAG+TGG | 0.584330 | 1.1:-15941379 | MS.gene33594:CDS |
TCCAGTGCTCCAATAGGTCA+AGG | 0.584850 | 1.1:-15938741 | MS.gene33594:intron |
TTTACCTTAATAAATGAGCA+AGG | 0.585073 | 1.1:+15938636 | None:intergenic |
TCGAAGGAAATGGAGAAGAG+TGG | 0.585669 | 1.1:-15942982 | MS.gene33594:CDS |
TGTGGCTTCTCAGTCCACAT+TGG | 0.586175 | 1.1:-15935187 | MS.gene33594:CDS |
GGGACATGGAAAGGATGAGA+GGG | 0.587034 | 1.1:-15942851 | MS.gene33594:CDS |
ATTACTGTTGGGAACAAGAG+TGG | 0.589151 | 1.1:-15943010 | MS.gene33594:CDS |
TTCGCCGGTGGAGACGGCAT+GGG | 0.591329 | 1.1:-15943091 | MS.gene33594:CDS |
GCCAATGTAGGTGAATGCAA+CGG | 0.592102 | 1.1:-15940038 | MS.gene33594:intron |
GAACAGAAGATTTGCTTCGC+CGG | 0.592463 | 1.1:-15943106 | MS.gene33594:CDS |
AAAATCCGAGCAATTCTTGG+TGG | 0.592932 | 1.1:-15939896 | MS.gene33594:CDS |
GATGCCTCATCTGTTGGACA+TGG | 0.593205 | 1.1:-15941487 | MS.gene33594:CDS |
GGAAGGAGTGAGTACATTGG+CGG | 0.594382 | 1.1:-15943070 | MS.gene33594:CDS |
ACTGCAACATCAGCTGGGAG+AGG | 0.595197 | 1.1:+15941397 | None:intergenic |
CTAATCGACTGGCCTGAAGG+TGG | 0.598093 | 1.1:-15938163 | MS.gene33594:CDS |
TCTTATTGTCAGCCCCTATG+TGG | 0.599891 | 1.1:-15935262 | MS.gene33594:CDS |
TGGGACATGGAAAGGATGAG+AGG | 0.600615 | 1.1:-15942852 | MS.gene33594:CDS |
TTAGTATCATACCTTTCCCA+AGG | 0.600980 | 1.1:+15935798 | None:intergenic |
TTTATTTAGCCTATGAGAGG+AGG | 0.601307 | 1.1:-15939994 | MS.gene33594:CDS |
GGTCTTACAGAGACTTGTGC+TGG | 0.601412 | 1.1:-15938714 | MS.gene33594:CDS |
GGAAGCTGGTTTGGAGCCTG+GGG | 0.608440 | 1.1:-15939956 | MS.gene33594:CDS |
TGCGACCACCAAGAATTGCT+CGG | 0.608998 | 1.1:+15939891 | None:intergenic |
TGCTCTCAAGCTCAAGAGAG+AGG | 0.609631 | 1.1:-15934394 | MS.gene33594:CDS |
ATTCTTGACCGTGTTCGTGA+TGG | 0.610522 | 1.1:-15940492 | MS.gene33594:CDS |
ATATCTAGCATACTTGCCAA+TGG | 0.611559 | 1.1:-15940801 | MS.gene33594:CDS |
GGAATGAGATGGTTCTACAC+TGG | 0.616046 | 1.1:-15935910 | MS.gene33594:CDS |
GCCACACAATAACTATGGAA+AGG | 0.617726 | 1.1:+15935216 | None:intergenic |
GAGGTCACGACAGTAATTTG+TGG | 0.618044 | 1.1:-15941598 | MS.gene33594:CDS |
GACATTGTTAAACTGCAGCA+TGG | 0.618080 | 1.1:-15935832 | MS.gene33594:CDS |
CTCTAAAGAAGAAAGCATCA+AGG | 0.618470 | 1.1:-15935112 | MS.gene33594:CDS |
GAACTCCGCGGCGTTTAGGG+TGG | 0.619528 | 1.1:+15943169 | None:intergenic |
CCAGCCATGTCCAACAGATG+AGG | 0.620053 | 1.1:+15941483 | None:intergenic |
TCTACACTGGTGACATAGGG+AGG | 0.620080 | 1.1:-15935897 | MS.gene33594:CDS |
ATAAATGAGCAAGGAAGAGG+AGG | 0.620903 | 1.1:+15938645 | None:intergenic |
GACGCCACCTTGATCGTCCG+CGG | 0.621373 | 1.1:+15943137 | None:intergenic |
GGTGTTGTTAGGTTTGCTAG+TGG | 0.622277 | 1.1:-15942886 | MS.gene33594:CDS |
CTTACAGAGACTTGTGCTGG+TGG | 0.623479 | 1.1:-15938711 | MS.gene33594:CDS |
GAAATGGAGAAGAGTGGTGA+TGG | 0.623509 | 1.1:-15942976 | MS.gene33594:CDS |
TGATAACTGCAACATCAGCT+GGG | 0.625199 | 1.1:+15941392 | None:intergenic |
AAGTCGCTTAACATCTGCGA+AGG | 0.627775 | 1.1:+15941450 | None:intergenic |
CATACGGAGAGATTACTGTT+GGG | 0.628004 | 1.1:-15943021 | MS.gene33594:CDS |
GCAGTGACTAAGCCAGACTC+GGG | 0.632844 | 1.1:+15934417 | None:intergenic |
CAACAGATGAGGCATCAGAT+GGG | 0.637208 | 1.1:+15941494 | None:intergenic |
TCTTGCTTGATGTATCTGTG+AGG | 0.638108 | 1.1:+15940580 | None:intergenic |
TCGTGATGGTGTGTTCAAGA+AGG | 0.643418 | 1.1:-15940478 | MS.gene33594:intron |
TGAAGCCCATTCTTCCAATG+TGG | 0.643581 | 1.1:+15935173 | None:intergenic |
TGAACACACCATCACGAACA+CGG | 0.648292 | 1.1:+15940484 | None:intergenic |
ACATTATATTGTCCACATAG+GGG | 0.657865 | 1.1:+15935250 | None:intergenic |
AGTGAAACGTGTGATATGCA+TGG | 0.659671 | 1.1:-15941527 | MS.gene33594:CDS |
CCAATTACAATTTCGCCCCG+AGG | 0.667096 | 1.1:+15938115 | None:intergenic |
AAAGACAAAAGAATCATACA+AGG | 0.668435 | 1.1:-15938053 | MS.gene33594:intron |
AAGGAAGAGGAGGTCCAACA+CGG | 0.670202 | 1.1:+15938655 | None:intergenic |
ATCCGTTTCATACTGTCTGG+CGG | 0.670954 | 1.1:-15939869 | MS.gene33594:CDS |
GATTACGAACCTGAAGAGCA+AGG | 0.678036 | 1.1:+15942794 | None:intergenic |
TGCTGAGTATCACCAGAAAG+GGG | 0.679172 | 1.1:+15939842 | None:intergenic |
ATGGGAAGGAGTGAGTACAT+TGG | 0.682317 | 1.1:-15943073 | MS.gene33594:CDS |
TGCGGAACAGGAGAGTTGCG+AGG | 0.692879 | 1.1:+15943196 | None:intergenic |
ATGTAGGTGAATGCAACGGG+AGG | 0.694846 | 1.1:-15940034 | MS.gene33594:intron |
GATAAAGAAAGGAACAAAGG+GGG | 0.697638 | 1.1:-15940559 | MS.gene33594:CDS |
AGATAAAGAAAGGAACAAAG+GGG | 0.697836 | 1.1:-15940560 | MS.gene33594:CDS |
ATCAAGGTGGCGTCACAGTG+CGG | 0.703302 | 1.1:-15943128 | MS.gene33594:CDS |
AATGACTCGCCAATGCCTCG+GGG | 0.706631 | 1.1:-15938130 | MS.gene33594:CDS |
CGGAGTTTACTGGAACTCCG+CGG | 0.730231 | 1.1:+15943157 | None:intergenic |
TAAAGAAGAAAGCATCAAGG+AGG | 0.735856 | 1.1:-15935109 | MS.gene33594:CDS |
AACTCCGCGGACGATCAAGG+TGG | 0.763356 | 1.1:-15943141 | MS.gene33594:CDS |
ACTAACCACCCTAAACGCCG+CGG | 0.770890 | 1.1:-15943174 | MS.gene33594:CDS |
CGGAGTTCCAGTAAACTCCG+CGG | 0.771535 | 1.1:-15943154 | MS.gene33594:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 15934344 | 15943253 | 15934344 | ID=MS.gene33594 |
chr1.1 | mRNA | 15934344 | 15943253 | 15934344 | ID=MS.gene33594.t1;Parent=MS.gene33594 |
chr1.1 | exon | 15942804 | 15943253 | 15942804 | ID=MS.gene33594.t1.exon1;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15942804 | 15943253 | 15942804 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15941754 | 15941834 | 15941754 | ID=MS.gene33594.t1.exon2;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15941754 | 15941834 | 15941754 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15941360 | 15941623 | 15941360 | ID=MS.gene33594.t1.exon3;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15941360 | 15941623 | 15941360 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15940775 | 15940906 | 15940775 | ID=MS.gene33594.t1.exon4;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15940775 | 15940906 | 15940775 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15940479 | 15940652 | 15940479 | ID=MS.gene33594.t1.exon5;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15940479 | 15940652 | 15940479 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15939821 | 15940050 | 15939821 | ID=MS.gene33594.t1.exon6;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15939821 | 15940050 | 15939821 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15938641 | 15938758 | 15938641 | ID=MS.gene33594.t1.exon7;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15938641 | 15938758 | 15938641 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15938054 | 15938185 | 15938054 | ID=MS.gene33594.t1.exon8;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15938054 | 15938185 | 15938054 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15935810 | 15935944 | 15935810 | ID=MS.gene33594.t1.exon9;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15935810 | 15935944 | 15935810 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15935089 | 15935295 | 15935089 | ID=MS.gene33594.t1.exon10;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15935089 | 15935295 | 15935089 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
chr1.1 | exon | 15934344 | 15934511 | 15934344 | ID=MS.gene33594.t1.exon11;Parent=MS.gene33594.t1 |
chr1.1 | CDS | 15934344 | 15934511 | 15934344 | ID=cds.MS.gene33594.t1;Parent=MS.gene33594.t1 |
Gene Sequence |
Protein sequence |