Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99751.t1 | KEH38148.1 | 70.9 | 127 | 18 | 3 | 26 | 152 | 15 | 122 | 8.00E-37 | 164.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99751.t1 | A0A072V9S4 | 70.9 | 127 | 18 | 3 | 26 | 152 | 15 | 122 | 5.8e-37 | 164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene99751 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene99751 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene99751 | 0.820016 | 8.57E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene99751 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene99751 | 0.819279 | 1.26E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene99751 | 0.810167 | 1.32E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene99751 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene050611 | MS.gene99751 | 0.803121 | 4.06E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene99751 | 0.808073 | 3.71E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene99751 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene99751 | 0.804214 | 2.41E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene99751 | 0.808355 | 3.23E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene99751 | 0.820665 | 6.08E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene99751 | 0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene99751 | 0.841962 | 3.46E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene99751 | 0.804262 | 2.35E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene99751 | 0.80029 | 1.54E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene99751 | 0.801123 | 1.04E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene99751 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene99751 | 0.841111 | 5.79E-58 | -1.69E-46 |
| MS.gene052896 | MS.gene99751 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene99751 | 0.827023 | 1.97E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene99751 | 0.821472 | 3.96E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene99751 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene99751 | 0.829322 | 5.49E-55 | -1.69E-46 |
| MS.gene05423 | MS.gene99751 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene99751 | -0.808447 | 3.08E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene99751 | 0.827965 | 1.17E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene99751 | 0.840032 | 1.11E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene99751 | 0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene99751 | 0.819519 | 1.11E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene99751 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene99751 | 0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene99751 | 0.859587 | 3.73E-63 | -1.69E-46 |
| MS.gene05604 | MS.gene99751 | 0.812992 | 3.21E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene99751 | 0.821683 | 3.54E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene99751 | 0.842539 | 2.43E-58 | -1.69E-46 |
| MS.gene056366 | MS.gene99751 | 0.838994 | 2.07E-57 | -1.69E-46 |
| MS.gene056498 | MS.gene99751 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene99751 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene99751 | 0.800222 | 1.59E-48 | -1.69E-46 |
| MS.gene057414 | MS.gene99751 | 0.810922 | 9.06E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene99751 | 0.820882 | 5.42E-53 | -1.69E-46 |
| MS.gene057855 | MS.gene99751 | 0.808523 | 2.97E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene99751 | 0.804617 | 1.98E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene99751 | 0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene99751 | 0.809732 | 1.64E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene99751 | 0.849029 | 4.20E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene99751 | 0.82748 | 1.53E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene99751 | 0.850588 | 1.54E-60 | -1.69E-46 |
| MS.gene058979 | MS.gene99751 | 0.842613 | 2.32E-58 | -1.69E-46 |
| MS.gene059272 | MS.gene99751 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene99751 | 0.814348 | 1.61E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99751.t1 | MTR_2g060565 | 63.946 | 147 | 31 | 4 | 24 | 170 | 13 | 137 | 3.24e-53 | 169 |
| MS.gene99751.t1 | MTR_1g031840 | 71.429 | 70 | 12 | 1 | 174 | 235 | 688 | 757 | 1.69e-23 | 99.0 |
| MS.gene99751.t1 | MTR_1g031840 | 65.116 | 43 | 15 | 0 | 26 | 68 | 295 | 337 | 4.70e-11 | 62.4 |
| MS.gene99751.t1 | MTR_5g046240 | 71.429 | 70 | 12 | 1 | 174 | 235 | 1405 | 1474 | 1.79e-23 | 99.0 |
| MS.gene99751.t1 | MTR_5g046240 | 65.116 | 43 | 15 | 0 | 26 | 68 | 1012 | 1054 | 3.27e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGATAATGAAGATATTT+TGG | 0.185566 | 2.1:-34742730 | MS.gene99751:intron |
| GAAGCTTTACAGGATCTTTA+TGG | 0.205527 | 2.1:-34743539 | MS.gene99751:intron |
| TGAAGTATTTGTACAAAATC+AGG | 0.279723 | 2.1:-34743575 | MS.gene99751:CDS |
| TTATCTATCGATTTCCTTGT+TGG | 0.306983 | 2.1:-34743601 | MS.gene99751:CDS |
| AGGATCATTTGCATATACTA+TGG | 0.316298 | 2.1:-34742655 | MS.gene99751:CDS |
| TGATGGAAATTCCTCTCTTC+TGG | 0.319956 | 2.1:-34742305 | MS.gene99751:CDS |
| AACGGCAGGACCTGGGGATA+TGG | 0.347297 | 2.1:-34743852 | MS.gene99751:intron |
| ATAAGTTATTGTTGCGCAAC+AGG | 0.376055 | 2.1:-34742587 | MS.gene99751:CDS |
| CTTGACAGGGCCGCGATTTG+AGG | 0.381522 | 2.1:-34742675 | MS.gene99751:CDS |
| TGTTGCGCAACAGGCTTGTT+GGG | 0.389869 | 2.1:-34742578 | MS.gene99751:CDS |
| GGAGGTTTATGTCAAGTCAT+AGG | 0.391450 | 2.1:-34742709 | MS.gene99751:CDS |
| CCAACTCCCACACCTGGAAT+TGG | 0.406541 | 2.1:+34744031 | None:intergenic |
| AGGTTTCTGATGCCCTTGAC+AGG | 0.426561 | 2.1:-34742689 | MS.gene99751:CDS |
| TGCAGAGGAGGACCAATTCC+AGG | 0.427136 | 2.1:-34744043 | MS.gene99751:intron |
| TTGTTGCGCAACAGGCTTGT+TGG | 0.433583 | 2.1:-34742579 | MS.gene99751:CDS |
| GTTGTTATAGAGAGACCATT+GGG | 0.482895 | 2.1:-34743830 | MS.gene99751:CDS |
| CTCAAATCGCGGCCCTGTCA+AGG | 0.484116 | 2.1:+34742676 | None:intergenic |
| TCTGCATAACATCAATTCAA+TGG | 0.493057 | 2.1:+34744060 | None:intergenic |
| AAAAGAGTTGGTTGGAGTTG+AGG | 0.497118 | 2.1:-34742351 | MS.gene99751:CDS |
| CAGGTATGAAATATGAATGA+TGG | 0.502337 | 2.1:+34742618 | None:intergenic |
| GAGGATGAAAGAATTGATTG+AGG | 0.520698 | 2.1:-34742332 | MS.gene99751:CDS |
| CTCTCTTTGAGAGATTATGC+TGG | 0.521446 | 2.1:-34742554 | MS.gene99751:CDS |
| GAAGTATTTGTACAAAATCA+GGG | 0.529854 | 2.1:-34743574 | MS.gene99751:CDS |
| AAATTCCTCTCTTCTGGCAC+AGG | 0.533778 | 2.1:-34742299 | MS.gene99751:CDS |
| GGTTGTTATAGAGAGACCAT+TGG | 0.546544 | 2.1:-34743831 | MS.gene99751:CDS |
| GGCACAGGTGAACAAGTTGA+AGG | 0.548409 | 2.1:-34742284 | MS.gene99751:CDS |
| TATGTTTAACGGCAGGACCT+GGG | 0.549650 | 2.1:-34743859 | MS.gene99751:intron |
| CGCAACAATAACTTATCCAC+AGG | 0.553250 | 2.1:+34742594 | None:intergenic |
| TCTCTTTGAGAGATTATGCT+GGG | 0.563044 | 2.1:-34742553 | MS.gene99751:CDS |
| CAAGCAATCAACATCTGACA+TGG | 0.564410 | 2.1:-34742377 | MS.gene99751:CDS |
| TCAAATCGCGGCCCTGTCAA+GGG | 0.565264 | 2.1:+34742677 | None:intergenic |
| CATGGATGAAAAGAGTTGGT+TGG | 0.567021 | 2.1:-34742359 | MS.gene99751:CDS |
| GGTTTCTGATGCCCTTGACA+GGG | 0.580132 | 2.1:-34742688 | MS.gene99751:CDS |
| CAATAACTTATCCACAGGAC+AGG | 0.581405 | 2.1:+34742599 | None:intergenic |
| TCTATAACAACCATATCCCC+AGG | 0.591618 | 2.1:+34743842 | None:intergenic |
| GAATTGATTGAGGCATGTGA+TGG | 0.598135 | 2.1:-34742322 | MS.gene99751:CDS |
| CAGATGTTGATTGCTTGCTA+TGG | 0.601126 | 2.1:+34742383 | None:intergenic |
| GAATTGATGTTATGCAGAGG+AGG | 0.602718 | 2.1:-34744055 | MS.gene99751:CDS |
| ATTCAGCATTATCATTGACA+TGG | 0.604110 | 2.1:-34743636 | MS.gene99751:intron |
| ATATGAATGATGGAAGGTGA+TGG | 0.610473 | 2.1:+34742628 | None:intergenic |
| TGTCTTCAACTTCTTCAGTG+TGG | 0.611666 | 2.1:-34744096 | MS.gene99751:CDS |
| CATATTTCATACCTGTCCTG+TGG | 0.618580 | 2.1:-34742610 | MS.gene99751:CDS |
| ATGTTTAACGGCAGGACCTG+GGG | 0.629545 | 2.1:-34743858 | MS.gene99751:intron |
| GTTCACCTGTGCCAGAAGAG+AGG | 0.629884 | 2.1:+34742294 | None:intergenic |
| AGGATACCTTGAACCTGCAG+AGG | 0.638345 | 2.1:-34743252 | MS.gene99751:intron |
| CAAATACTTCAATTCCAACA+AGG | 0.642031 | 2.1:+34743587 | None:intergenic |
| TGCAAATGATCCTCAAATCG+CGG | 0.643658 | 2.1:+34742665 | None:intergenic |
| CTGACATGGATGAAAAGAGT+TGG | 0.644103 | 2.1:-34742363 | MS.gene99751:CDS |
| TGCTGGGAAACAGCAACATG+AGG | 0.645299 | 2.1:-34742537 | MS.gene99751:intron |
| ACATGGAACAATAAACCCAA+TGG | 0.645346 | 2.1:+34743815 | None:intergenic |
| ATTGAATTGATGTTATGCAG+AGG | 0.645749 | 2.1:-34744058 | MS.gene99751:CDS |
| TATTTGTACAAAATCAGGGT+GGG | 0.645769 | 2.1:-34743570 | MS.gene99751:CDS |
| AGTACTTCAAAACAGAGACA+TGG | 0.650829 | 2.1:+34743798 | None:intergenic |
| TATGAAATATGAATGATGGA+AGG | 0.668826 | 2.1:+34742622 | None:intergenic |
| TGAGAAAATTCTGTGTACAG+AGG | 0.700326 | 2.1:+34743771 | None:intergenic |
| GTATTTGTACAAAATCAGGG+TGG | 0.744705 | 2.1:-34743571 | MS.gene99751:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTGGTAAAAGTTAT+TGG | - | chr2.1:34743359-34743378 | MS.gene99751:intron | 15.0% |
| !! | ATATACTTAATTGAGAATAT+GGG | - | chr2.1:34743261-34743280 | MS.gene99751:CDS | 15.0% |
| !! | TATATACTTAATTGAGAATA+TGG | - | chr2.1:34743260-34743279 | MS.gene99751:CDS | 15.0% |
| !!! | CCAAAATAAACAAATTATTT+TGG | - | chr2.1:34742878-34742897 | MS.gene99751:intron | 15.0% |
| !!! | CCAAAATAATTTGTTTATTT+TGG | + | chr2.1:34742881-34742900 | None:intergenic | 15.0% |
| !!! | CTTATTTTATAGATAATGTT+AGG | - | chr2.1:34743550-34743569 | MS.gene99751:CDS | 15.0% |
| !!! | TTCAAAAATTTAAAGTAAGT+AGG | + | chr2.1:34742433-34742452 | None:intergenic | 15.0% |
| !! | TCAACATAATCAATATTGTT+TGG | + | chr2.1:34743609-34743628 | None:intergenic | 20.0% |
| !!! | AAATTCTTTAAAGCGTTAAA+AGG | - | chr2.1:34743384-34743403 | MS.gene99751:intron | 20.0% |
| !!! | ATTTTATAGATAATGTTAGG+TGG | - | chr2.1:34743553-34743572 | MS.gene99751:CDS | 20.0% |
| !!! | TGTATCTTATTTGTTCTTAT+TGG | - | chr2.1:34743909-34743928 | MS.gene99751:intron | 20.0% |
| !!! | TTTTATAGATAATGTTAGGT+GGG | - | chr2.1:34743554-34743573 | MS.gene99751:CDS | 20.0% |
| ! | ATCTAACTAAGAGATACTTA+AGG | + | chr2.1:34743434-34743453 | None:intergenic | 25.0% |
| ! | CTTGTATCAAAGCAAAAAAT+TGG | - | chr2.1:34743346-34743365 | MS.gene99751:intron | 25.0% |
| ! | GCATAAGAAATATTCTATGT+AGG | + | chr2.1:34743183-34743202 | None:intergenic | 25.0% |
| ! | TAAATATAATGAAACTTGCC+AGG | + | chr2.1:34742990-34743009 | None:intergenic | 25.0% |
| ! | TTTATAGATAATGTTAGGTG+GGG | - | chr2.1:34743555-34743574 | MS.gene99751:CDS | 25.0% |
| !! | GAAGTATTTGTACAAAATCA+GGG | - | chr2.1:34742793-34742812 | MS.gene99751:intron | 25.0% |
| !! | TATGAAATATGAATGATGGA+AGG | + | chr2.1:34743748-34743767 | None:intergenic | 25.0% |
| !! | TGAAGTATTTGTACAAAATC+AGG | - | chr2.1:34742792-34742811 | MS.gene99751:intron | 25.0% |
| AGGATCATTTGCATATACTA+TGG | - | chr2.1:34743712-34743731 | MS.gene99751:intron | 30.0% | |
| ATTCAGCATTATCATTGACA+TGG | - | chr2.1:34742731-34742750 | MS.gene99751:intron | 30.0% | |
| ATTGAATTGATGTTATGCAG+AGG | - | chr2.1:34742309-34742328 | MS.gene99751:CDS | 30.0% | |
| CAAATACTTCAATTCCAACA+AGG | + | chr2.1:34742783-34742802 | None:intergenic | 30.0% | |
| CAGGTATGAAATATGAATGA+TGG | + | chr2.1:34743752-34743771 | None:intergenic | 30.0% | |
| CTTAGTTAGATTTAGCTGTT+GGG | - | chr2.1:34743443-34743462 | MS.gene99751:intron | 30.0% | |
| TATTTGTACAAAATCAGGGT+GGG | - | chr2.1:34742797-34742816 | MS.gene99751:intron | 30.0% | |
| TCTGCATAACATCAATTCAA+TGG | + | chr2.1:34742310-34742329 | None:intergenic | 30.0% | |
| TCTTAGTTAGATTTAGCTGT+TGG | - | chr2.1:34743442-34743461 | MS.gene99751:intron | 30.0% | |
| ! | GAAACAATGTCCAATTTTCA+AGG | - | chr2.1:34742686-34742705 | MS.gene99751:CDS | 30.0% |
| ! | GCAGGATAATGAAGATATTT+TGG | - | chr2.1:34743637-34743656 | MS.gene99751:intron | 30.0% |
| ! | TAATTATGTTTTACCTCTGC+AGG | + | chr2.1:34743131-34743150 | None:intergenic | 30.0% |
| ! | TGATAATGCTGAATAGGAAA+AGG | + | chr2.1:34742725-34742744 | None:intergenic | 30.0% |
| ! | TGTCAATGATAATGCTGAAT+AGG | + | chr2.1:34742731-34742750 | None:intergenic | 30.0% |
| !! | ATGAACTTGAAGAGTATTCA+AGG | - | chr2.1:34743479-34743498 | MS.gene99751:intron | 30.0% |
| !! | GGATAATGAAGATATTTTGG+AGG | - | chr2.1:34743640-34743659 | MS.gene99751:intron | 30.0% |
| !! | TTATCTATCGATTTCCTTGT+TGG | - | chr2.1:34742766-34742785 | MS.gene99751:intron | 30.0% |
| AAACGACCTATACCATTCAA+CGG | - | chr2.1:34742466-34742485 | MS.gene99751:intron | 35.0% | |
| ACATGGAACAATAAACCCAA+TGG | + | chr2.1:34742555-34742574 | None:intergenic | 35.0% | |
| AGTACTTCAAAACAGAGACA+TGG | + | chr2.1:34742572-34742591 | None:intergenic | 35.0% | |
| ATAAGTTATTGTTGCGCAAC+AGG | - | chr2.1:34743780-34743799 | MS.gene99751:CDS | 35.0% | |
| ATATCTTCATTATCCTGCAG+TGG | + | chr2.1:34743635-34743654 | None:intergenic | 35.0% | |
| ATCTTCCATCTTAATCCATC+AGG | + | chr2.1:34743879-34743898 | None:intergenic | 35.0% | |
| GAAGCTTTACAGGATCTTTA+TGG | - | chr2.1:34742828-34742847 | MS.gene99751:intron | 35.0% | |
| GAGGATGAAAGAATTGATTG+AGG | - | chr2.1:34744035-34744054 | MS.gene99751:intron | 35.0% | |
| GTATTTGTACAAAATCAGGG+TGG | - | chr2.1:34742796-34742815 | MS.gene99751:intron | 35.0% | |
| GTTGTCAGTTCCTTGAAAAT+TGG | + | chr2.1:34742699-34742718 | None:intergenic | 35.0% | |
| GTTGTTATAGAGAGACCATT+GGG | - | chr2.1:34742537-34742556 | MS.gene99751:intron | 35.0% | |
| TCAAATGGAATTCAACACAG+TGG | + | chr2.1:34743015-34743034 | None:intergenic | 35.0% | |
| TCTGAAGGTAACAAAAGTTC+AGG | + | chr2.1:34743074-34743093 | None:intergenic | 35.0% | |
| TCTTCCATCTTAATCCATCA+GGG | + | chr2.1:34743878-34743897 | None:intergenic | 35.0% | |
| TGAGAAAATTCTGTGTACAG+AGG | + | chr2.1:34742599-34742618 | None:intergenic | 35.0% | |
| TGCCTTGGAACTATGTTTAA+CGG | - | chr2.1:34742497-34742516 | MS.gene99751:intron | 35.0% | |
| TGTTTGGTACAACTACGTTA+GGG | + | chr2.1:34743593-34743612 | None:intergenic | 35.0% | |
| TTGTTTGGTACAACTACGTT+AGG | + | chr2.1:34743594-34743613 | None:intergenic | 35.0% | |
| ! | ATATGAATGATGGAAGGTGA+TGG | + | chr2.1:34743742-34743761 | None:intergenic | 35.0% |
| ! | TCTCTTTGAGAGATTATGCT+GGG | - | chr2.1:34743814-34743833 | MS.gene99751:CDS | 35.0% |
| ! | TTTTGAATGCTTTTCCCTGA+TGG | - | chr2.1:34743861-34743880 | MS.gene99751:intron | 35.0% |
| !! | AAAAAGCATCTACTGTACTC+TGG | + | chr2.1:34743324-34743343 | None:intergenic | 35.0% |
| !! | ACTTGAAGAGTATTCAAGGA+TGG | - | chr2.1:34743483-34743502 | MS.gene99751:intron | 35.0% |
| !! | CTTGAAGAGTATTCAAGGAT+GGG | - | chr2.1:34743484-34743503 | MS.gene99751:intron | 35.0% |
| !!! | GGATACTTTTGAAGCTTTAC+AGG | - | chr2.1:34742818-34742837 | MS.gene99751:intron | 35.0% |
| !!! | TTTTCCCTGATGGATTAAGA+TGG | - | chr2.1:34743871-34743890 | MS.gene99751:intron | 35.0% |
| ACATTCCCTGTAACGCAAAT+TGG | + | chr2.1:34743948-34743967 | None:intergenic | 40.0% | |
| ACTGATCCAATTTGCGTTAC+AGG | - | chr2.1:34743939-34743958 | MS.gene99751:intron | 40.0% | |
| ATTAGACAGTGTATTCCAGG+TGG | + | chr2.1:34743042-34743061 | None:intergenic | 40.0% | |
| CAAGCAATCAACATCTGACA+TGG | - | chr2.1:34743990-34744009 | MS.gene99751:intron | 40.0% | |
| CAATAACTTATCCACAGGAC+AGG | + | chr2.1:34743771-34743790 | None:intergenic | 40.0% | |
| CATATTTCATACCTGTCCTG+TGG | - | chr2.1:34743757-34743776 | MS.gene99751:intron | 40.0% | |
| CGCAACAATAACTTATCCAC+AGG | + | chr2.1:34743776-34743795 | None:intergenic | 40.0% | |
| CTGACATGGATGAAAAGAGT+TGG | - | chr2.1:34744004-34744023 | MS.gene99751:intron | 40.0% | |
| CTGATCCAATTTGCGTTACA+GGG | - | chr2.1:34743940-34743959 | MS.gene99751:intron | 40.0% | |
| GAATTGATGTTATGCAGAGG+AGG | - | chr2.1:34742312-34742331 | MS.gene99751:CDS | 40.0% | |
| GAATTGATTGAGGCATGTGA+TGG | - | chr2.1:34744045-34744064 | MS.gene99751:CDS | 40.0% | |
| GGAGGTTTATGTCAAGTCAT+AGG | - | chr2.1:34743658-34743677 | MS.gene99751:intron | 40.0% | |
| GGTTGTTATAGAGAGACCAT+TGG | - | chr2.1:34742536-34742555 | MS.gene99751:intron | 40.0% | |
| GTTGTTCCGTTGAATGGTAT+AGG | + | chr2.1:34742475-34742494 | None:intergenic | 40.0% | |
| TCTATAACAACCATATCCCC+AGG | + | chr2.1:34742528-34742547 | None:intergenic | 40.0% | |
| TGATGGAAATTCCTCTCTTC+TGG | - | chr2.1:34744062-34744081 | MS.gene99751:CDS | 40.0% | |
| TGCAAATGATCCTCAAATCG+CGG | + | chr2.1:34743705-34743724 | None:intergenic | 40.0% | |
| TGCATTAGACAGTGTATTCC+AGG | + | chr2.1:34743045-34743064 | None:intergenic | 40.0% | |
| TGCCGTTAAACATAGTTCCA+AGG | + | chr2.1:34742502-34742521 | None:intergenic | 40.0% | |
| TGTCTTCAACTTCTTCAGTG+TGG | - | chr2.1:34742271-34742290 | MS.gene99751:CDS | 40.0% | |
| TTATGGTGAGCTTCTCGATA+GGG | - | chr2.1:34742845-34742864 | MS.gene99751:intron | 40.0% | |
| TTGGAACTATGTTTAACGGC+AGG | - | chr2.1:34742501-34742520 | MS.gene99751:intron | 40.0% | |
| TTTATGGTGAGCTTCTCGAT+AGG | - | chr2.1:34742844-34742863 | MS.gene99751:intron | 40.0% | |
| ! | AAAAGAGTTGGTTGGAGTTG+AGG | - | chr2.1:34744016-34744035 | MS.gene99751:intron | 40.0% |
| ! | AATTTTCTCAGTAGCTGGAG+GGG | - | chr2.1:34742609-34742628 | MS.gene99751:CDS | 40.0% |
| ! | AGAATTTTCTCAGTAGCTGG+AGG | - | chr2.1:34742607-34742626 | MS.gene99751:CDS | 40.0% |
| ! | CACAGAATTTTCTCAGTAGC+TGG | - | chr2.1:34742604-34742623 | MS.gene99751:CDS | 40.0% |
| ! | CAGATGTTGATTGCTTGCTA+TGG | + | chr2.1:34743987-34744006 | None:intergenic | 40.0% |
| ! | CATGGATGAAAAGAGTTGGT+TGG | - | chr2.1:34744008-34744027 | MS.gene99751:intron | 40.0% |
| ! | CTCTCTTTGAGAGATTATGC+TGG | - | chr2.1:34743813-34743832 | MS.gene99751:CDS | 40.0% |
| ! | GAATTTTCTCAGTAGCTGGA+GGG | - | chr2.1:34742608-34742627 | MS.gene99751:CDS | 40.0% |
| !! | AAATGCTTTTCGAGAGCTGA+AGG | - | chr2.1:34743095-34743114 | MS.gene99751:intron | 40.0% |
| !! | ATTATGTTGACTTCCACTGC+AGG | - | chr2.1:34743619-34743638 | MS.gene99751:CDS | 40.0% |
| !! | CTCGAAAAGCATTTCTCTGA+AGG | + | chr2.1:34743089-34743108 | None:intergenic | 40.0% |
| AAATTCCTCTCTTCTGGCAC+AGG | - | chr2.1:34744068-34744087 | MS.gene99751:CDS | 45.0% | |
| ATTCCAGGTGGCAAGTCAAA+TGG | + | chr2.1:34743030-34743049 | None:intergenic | 45.0% | |
| TATGTTTAACGGCAGGACCT+GGG | - | chr2.1:34742508-34742527 | MS.gene99751:intron | 45.0% | |
| ! | CGATGTCAACTTCTTTTGCC+TGG | - | chr2.1:34742969-34742988 | MS.gene99751:intron | 45.0% |
| ! | GTTTTACCTCTGCAGGTTCA+AGG | + | chr2.1:34743124-34743143 | None:intergenic | 45.0% |
| !! | ATTCCATTTGACTTGCCACC+TGG | - | chr2.1:34743024-34743043 | MS.gene99751:intron | 45.0% |
| AGGATACCTTGAACCTGCAG+AGG | - | chr2.1:34743115-34743134 | MS.gene99751:intron | 50.0% | |
| AGGTTTCTGATGCCCTTGAC+AGG | - | chr2.1:34743678-34743697 | MS.gene99751:intron | 50.0% | |
| ATGTTTAACGGCAGGACCTG+GGG | - | chr2.1:34742509-34742528 | MS.gene99751:intron | 50.0% | |
| CACACATTGCTGCCACCTAA+AGG | + | chr2.1:34742643-34742662 | None:intergenic | 50.0% | |
| CTATGTTTAACGGCAGGACC+TGG | - | chr2.1:34742507-34742526 | MS.gene99751:intron | 50.0% | |
| CTTTAGGTGGCAGCAATGTG+TGG | - | chr2.1:34742641-34742660 | MS.gene99751:CDS | 50.0% | |
| GGAGGGGTAAAGAAGCCTTT+AGG | - | chr2.1:34742625-34742644 | MS.gene99751:CDS | 50.0% | |
| GGGGTAAAGAAGCCTTTAGG+TGG | - | chr2.1:34742628-34742647 | MS.gene99751:CDS | 50.0% | |
| GGTTTCTGATGCCCTTGACA+GGG | - | chr2.1:34743679-34743698 | MS.gene99751:intron | 50.0% | |
| TCAACGGAACAACACTGCCT+TGG | - | chr2.1:34742482-34742501 | MS.gene99751:intron | 50.0% | |
| TGCTGGGAAACAGCAACATG+AGG | - | chr2.1:34743830-34743849 | MS.gene99751:CDS | 50.0% | |
| TTGACCAAAATCCTCCGCCA+GGG | + | chr2.1:34742371-34742390 | None:intergenic | 50.0% | |
| TTGTTGCGCAACAGGCTTGT+TGG | - | chr2.1:34743788-34743807 | MS.gene99751:CDS | 50.0% | |
| TTTGACCAAAATCCTCCGCC+AGG | + | chr2.1:34742372-34742391 | None:intergenic | 50.0% | |
| ! | GGCACAGGTGAACAAGTTGA+AGG | - | chr2.1:34744083-34744102 | MS.gene99751:CDS | 50.0% |
| ! | GGCAGTGTTGTTCCGTTGAA+TGG | + | chr2.1:34742481-34742500 | None:intergenic | 50.0% |
| ! | TGTTGCGCAACAGGCTTGTT+GGG | - | chr2.1:34743789-34743808 | MS.gene99751:CDS | 50.0% |
| AGGAGGACCAATTCCAGGTG+TGG | - | chr2.1:34742329-34742348 | MS.gene99751:CDS | 55.0% | |
| CCAACTCCCACACCTGGAAT+TGG | + | chr2.1:34742339-34742358 | None:intergenic | 55.0% | |
| CCAATTCCAGGTGTGGGAGT+TGG | - | chr2.1:34742336-34742355 | MS.gene99751:CDS | 55.0% | |
| GGAGGACCAATTCCAGGTGT+GGG | - | chr2.1:34742330-34742349 | MS.gene99751:CDS | 55.0% | |
| GTTCACCTGTGCCAGAAGAG+AGG | + | chr2.1:34744076-34744095 | None:intergenic | 55.0% | |
| TCAAATCGCGGCCCTGTCAA+GGG | + | chr2.1:34743693-34743712 | None:intergenic | 55.0% | |
| TGACCAAAATCCTCCGCCAG+GGG | + | chr2.1:34742370-34742389 | None:intergenic | 55.0% | |
| TGCAGAGGAGGACCAATTCC+AGG | - | chr2.1:34742324-34742343 | MS.gene99751:CDS | 55.0% | |
| AACGGCAGGACCTGGGGATA+TGG | - | chr2.1:34742515-34742534 | MS.gene99751:intron | 60.0% | |
| CCAGGTGTGGGAGTTGGATG+AGG | - | chr2.1:34742342-34742361 | MS.gene99751:CDS | 60.0% | |
| CCTCATCCAACTCCCACACC+TGG | + | chr2.1:34742345-34742364 | None:intergenic | 60.0% | |
| CTCAAATCGCGGCCCTGTCA+AGG | + | chr2.1:34743694-34743713 | None:intergenic | 60.0% | |
| CTTGACAGGGCCGCGATTTG+AGG | - | chr2.1:34743692-34743711 | MS.gene99751:intron | 60.0% | |
| ! | GGAGTTGGATGAGGTGCCCC+TGG | - | chr2.1:34742351-34742370 | MS.gene99751:CDS | 65.0% |
| ! | GTGCCCCTGGCGGAGGATTT+TGG | - | chr2.1:34742364-34742383 | MS.gene99751:CDS | 65.0% |
| ! | GTTGGATGAGGTGCCCCTGG+CGG | - | chr2.1:34742354-34742373 | MS.gene99751:CDS | 65.0% |
| ! | GGATGAGGTGCCCCTGGCGG+AGG | - | chr2.1:34742357-34742376 | MS.gene99751:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 34742270 | 34744119 | 34742270 | ID=MS.gene99751 |
| chr2.1 | mRNA | 34742270 | 34744119 | 34742270 | ID=MS.gene99751.t1;Parent=MS.gene99751 |
| chr2.1 | exon | 34744044 | 34744119 | 34744044 | ID=MS.gene99751.t1.exon1;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34744044 | 34744119 | 34744044 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| chr2.1 | exon | 34743759 | 34743866 | 34743759 | ID=MS.gene99751.t1.exon2;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34743759 | 34743866 | 34743759 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| chr2.1 | exon | 34743540 | 34743652 | 34743540 | ID=MS.gene99751.t1.exon3;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34743540 | 34743652 | 34743540 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| chr2.1 | exon | 34743253 | 34743296 | 34743253 | ID=MS.gene99751.t1.exon4;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34743253 | 34743296 | 34743253 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| chr2.1 | exon | 34742538 | 34742748 | 34742538 | ID=MS.gene99751.t1.exon5;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34742538 | 34742748 | 34742538 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| chr2.1 | exon | 34742270 | 34742428 | 34742270 | ID=MS.gene99751.t1.exon6;Parent=MS.gene99751.t1 |
| chr2.1 | CDS | 34742270 | 34742428 | 34742270 | ID=cds.MS.gene99751.t1;Parent=MS.gene99751.t1 |
| Gene Sequence |
| Protein sequence |
