AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048614.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048614.01.T01 MTR_7g094670 73.824 340 31 3 10 303 306 633 7.59e-165 499
MsG0080048614.01.T01 MTR_4g014920 55.718 341 90 7 10 302 361 688 7.28e-113 341
MsG0080048614.01.T01 MTR_4g014920 55.718 341 90 7 10 302 357 684 8.78e-113 341
MsG0080048614.01.T01 MTR_7g066810 53.529 340 93 8 10 303 370 690 4.13e-102 313
MsG0080048614.01.T01 MTR_4g014920 52.881 295 80 6 10 258 361 642 1.32e-89 280
MsG0080048614.01.T01 MTR_4g014920 50.000 222 53 5 10 185 361 570 4.07e-55 188
MsG0080048614.01.T01 MTR_7g068260 57.317 82 33 2 156 237 53 132 1.41e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048614.01.T01 AT3G09100 52.424 330 94 6 10 293 356 668 8.12e-104 317
MsG0080048614.01.T01 AT5G01290 48.802 334 102 7 10 293 339 653 9.55e-90 281
MsG0080048614.01.T01 AT5G28210 40.290 345 136 7 10 303 299 624 8.35e-72 233
MsG0080048614.01.T01 AT3G09100 47.788 113 53 4 10 119 356 465 2.12e-22 97.1

Find 85 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATATTTCTTTCTATTC+AGG 0.181668 contig374end:+32576 MsG0080048614.01.T01:CDS
TGAATTCATTACCTATAAAA+AGG 0.241766 contig374end:+32680 MsG0080048614.01.T01:CDS
CTCTGTTGATTTCCACTTTG+AGG 0.274805 contig374end:+32112 MsG0080048614.01.T01:CDS
CCGTGTCCCATCAGCTTTCC+AGG 0.321467 contig374end:-30437 None:intergenic
GGGATGCTGCGGAGCATCAC+TGG 0.336093 contig374end:+32619 MsG0080048614.01.T01:CDS
ATATACGACTTGGAACCTTT+TGG 0.344639 contig374end:+31490 MsG0080048614.01.T01:CDS
CTACGAAAGGTGGAAGTTGC+TGG 0.363974 contig374end:+31399 MsG0080048614.01.T01:CDS
ACGTGGAAAGAAGAAGTTAA+TGG 0.381079 contig374end:+32250 MsG0080048614.01.T01:CDS
GGAGGATTATTGAGTGCTAC+TGG 0.390746 contig374end:+32598 MsG0080048614.01.T01:CDS
AACTTCCACCTTTCGTAGAA+TGG 0.392294 contig374end:-31394 None:intergenic
TTATAGGTAATGAATTCATT+TGG 0.402138 contig374end:-32675 None:intergenic
ATCTATTCTGTCCGCATACA+AGG 0.402578 contig374end:-32901 None:intergenic
AAGATATTTCTTTCTATTCA+GGG 0.428244 contig374end:+32577 MsG0080048614.01.T01:CDS
TCTCAGAAACAGTTACTAGT+AGG 0.438559 contig374end:+31542 MsG0080048614.01.T01:CDS
GAAACCGCATAGAGATCCTT+TGG 0.444234 contig374end:-30516 None:intergenic
TTTCCTTGCAGATACTCAAA+AGG 0.450664 contig374end:+30535 MsG0080048614.01.T01:CDS
CCTTACCTACCTTGGAAAAG+AGG 0.457807 contig374end:+33114 MsG0080048614.01.T01:three_prime_UTR
TCCAAGTCGTATATATAGTA+AGG 0.458981 contig374end:-31481 None:intergenic
TCTCACTAATCTCGTTCAAC+AGG 0.461134 contig374end:-32866 None:intergenic
CTACCTTGGAAAAGAGGTCT+AGG 0.463239 contig374end:+33120 MsG0080048614.01.T01:three_prime_UTR
TTAGGAAAGCCAGATCTTTG+AGG 0.466061 contig374end:+31795 MsG0080048614.01.T01:intron
AAATCAACAGAGTTCATCTC+AGG 0.466404 contig374end:-32101 None:intergenic
TGTATGCGGACAGAATAGAT+AGG 0.475179 contig374end:+32904 MsG0080048614.01.T01:CDS
GTACGTCATCCTCAAAGATC+TGG 0.476332 contig374end:-31804 None:intergenic
ACATCATTCCTTACCTACCT+TGG 0.476675 contig374end:+33106 MsG0080048614.01.T01:three_prime_UTR
CGTAGCACATGTAATAACTT+TGG 0.481014 contig374end:-33070 None:intergenic
ATAGTAAGGACTTGTACTCT+TGG 0.482011 contig374end:-31467 None:intergenic
CAGAATAGATAGGGATATCA+AGG 0.489609 contig374end:+32914 MsG0080048614.01.T01:CDS
TTCCTTGCAGATACTCAAAA+GGG 0.491076 contig374end:+30536 MsG0080048614.01.T01:CDS
CGGTATATGATGCTAATCAC+TGG 0.491709 contig374end:+30457 MsG0080048614.01.T01:CDS
TATCAAGGCTCACCAGCATA+TGG 0.499312 contig374end:+32929 MsG0080048614.01.T01:CDS
GCTAATATTATTGATTTCCA+AGG 0.501041 contig374end:+33306 MsG0080048614.01.T01:three_prime_UTR
GGATGCTGCGGAGCATCACT+GGG 0.502147 contig374end:+32620 MsG0080048614.01.T01:CDS
TGGAAATCAATAATATTAGC+AGG 0.516112 contig374end:-33303 None:intergenic
GATATCACAAAGCAAAACCT+TGG 0.520621 contig374end:-33323 None:intergenic
GTCACTATACGTACACCAAA+AGG 0.522254 contig374end:-31505 None:intergenic
AACACAAATGGCTCTGAAGC+GGG 0.524566 contig374end:+33265 MsG0080048614.01.T01:three_prime_UTR
TGGTGGTGACAGGTGGGAGC+TGG 0.526809 contig374end:+32200 MsG0080048614.01.T01:intron
AGTAATTGAGCCTCGTAACA+TGG 0.533636 contig374end:+31429 MsG0080048614.01.T01:CDS
TCATGTGTGCGAGGGACATA+CGG 0.535176 contig374end:-32056 None:intergenic
AGGACTTGTACTCTTGGAAA+GGG 0.538615 contig374end:-31461 None:intergenic
CATCCACAGTTTATGCAAAG+TGG 0.552303 contig374end:-33366 None:intergenic
GGAAAGAAGAAGTTAATGGA+AGG 0.557348 contig374end:+32254 MsG0080048614.01.T01:CDS
TCCTTACTATATATACGACT+TGG 0.563639 contig374end:+31480 MsG0080048614.01.T01:CDS
AAGGACTTGTACTCTTGGAA+AGG 0.570394 contig374end:-31462 None:intergenic
CACATGAAGGTCTTCTGAAG+TGG 0.574240 contig374end:+32072 MsG0080048614.01.T01:CDS
ACTTTGGCAACAAAACTGTA+CGG 0.575658 contig374end:-33054 None:intergenic
GGTATATGATGCTAATCACT+GGG 0.577265 contig374end:+30458 MsG0080048614.01.T01:CDS
TATGCCACCTGGAAAGCTGA+TGG 0.582039 contig374end:+30430 MsG0080048614.01.T01:CDS
TATGTCCCTCGCACACATGA+AGG 0.582325 contig374end:+32059 MsG0080048614.01.T01:CDS
GTATGCGGACAGAATAGATA+GGG 0.587599 contig374end:+32905 MsG0080048614.01.T01:CDS
GAGGATTATTGAGTGCTACT+GGG 0.592540 contig374end:+32599 MsG0080048614.01.T01:CDS
TGCAGATGCCATTCTACGAA+AGG 0.593113 contig374end:+31386 MsG0080048614.01.T01:intron
AAAGATAAGAGACGCGGCAG+TGG 0.594207 contig374end:-33405 None:intergenic
AGCATCACTGGGTCTGTATG+CGG 0.595057 contig374end:+32631 MsG0080048614.01.T01:CDS
ACAGGTAATGCGAAGCATCA+AGG 0.597534 contig374end:+32824 MsG0080048614.01.T01:intron
CAAGGATAATATCACAGAAG+AGG 0.597593 contig374end:+32842 MsG0080048614.01.T01:CDS
TAGGTTCTCTGATATTGTCG+TGG 0.598491 contig374end:+33139 MsG0080048614.01.T01:three_prime_UTR
ATGCCACCTGGAAAGCTGAT+GGG 0.600995 contig374end:+30431 MsG0080048614.01.T01:CDS
CAACACAAATGGCTCTGAAG+CGG 0.601397 contig374end:+33264 MsG0080048614.01.T01:three_prime_UTR
CCTGGAAAGCTGATGGGACA+CGG 0.609012 contig374end:+30437 MsG0080048614.01.T01:CDS
ATGATGCTAATCACTGGGGA+TGG 0.613535 contig374end:+30463 MsG0080048614.01.T01:CDS
AAGAAAAGAAATAAAATGTG+TGG 0.613615 contig374end:+33482 MsG0080048614.01.T01:three_prime_UTR
GAAAGAAGAAGTTAATGGAA+GGG 0.613915 contig374end:+32255 MsG0080048614.01.T01:CDS
GTACATAGACAACCTCAAAG+TGG 0.620512 contig374end:-32124 None:intergenic
AGAAGACCTTCATGTGTGCG+AGG 0.620902 contig374end:-32065 None:intergenic
GAAGACCTTCATGTGTGCGA+GGG 0.635088 contig374end:-32064 None:intergenic
TCTATTCTGTCCGCATACAA+GGG 0.643552 contig374end:-32900 None:intergenic
CCACAGTTTATGCAAAGTGG+TGG 0.644692 contig374end:-33363 None:intergenic
AGAGATATTACTATGCCACC+TGG 0.645134 contig374end:+30419 MsG0080048614.01.T01:CDS
AGATGCCATTCTACGAAAGG+TGG 0.651820 contig374end:+31389 MsG0080048614.01.T01:intron
AATCAACAGAGTTCATCTCA+GGG 0.656794 contig374end:-32100 None:intergenic
ACCAGCATATGGTCTCGTCA+CGG 0.663437 contig374end:+32940 MsG0080048614.01.T01:CDS
GCTTCTCGTTCCATGTTACG+AGG 0.667473 contig374end:-31439 None:intergenic
GGTCTGTATGCGGATCAGAA+CGG 0.673442 contig374end:+32641 MsG0080048614.01.T01:CDS
CCACCACTTTGCATAAACTG+TGG 0.673514 contig374end:+33363 MsG0080048614.01.T01:three_prime_UTR
TGAGTGCTACTGGGATGCTG+CGG 0.677208 contig374end:+32608 MsG0080048614.01.T01:CDS
CAATGCAAAGATAAGAGACG+CGG 0.679573 contig374end:-33411 None:intergenic
ATATTTCTTTCTATTCAGGG+AGG 0.688150 contig374end:+32580 MsG0080048614.01.T01:CDS
TCCTTGCAGATACTCAAAAG+GGG 0.689732 contig374end:+30537 MsG0080048614.01.T01:CDS
AAATCAATAATATTAGCAGG+TGG 0.692388 contig374end:-33300 None:intergenic
CATTCGACTACCCTTGTATG+CGG 0.697550 contig374end:+32890 MsG0080048614.01.T01:CDS
GCCGTGACGAGACCATATGC+TGG 0.704603 contig374end:-32941 None:intergenic
TGTCCCATCAGCTTTCCAGG+TGG 0.715261 contig374end:-30434 None:intergenic
GTATATGATGCTAATCACTG+GGG 0.803075 contig374end:+30459 MsG0080048614.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAATTAAAATTTA+TGG - contig374end:32533-32552 None:intergenic 0.0%
!! TTCTGTAAAAAAATAAAAAT+TGG + contig374end:32800-32819 MsG0080048614.01.T01:intron 10.0%
!!! ATTTTATTTCTTTTCTTTTT+TGG - contig374end:33479-33498 None:intergenic 10.0%
!!! TTTTATTTCTTTTCTTTTTT+GGG - contig374end:33478-33497 None:intergenic 10.0%
!! AAAAAAATAAAAATTGGTAC+AGG + contig374end:32806-32825 MsG0080048614.01.T01:intron 15.0%
!! ATGGTATAAAAAAAATAACA+AGG - contig374end:32309-32328 None:intergenic 15.0%
!! GGAATCAAATATATAATTTA+AGG - contig374end:30644-30663 None:intergenic 15.0%
!! TCTAAACTATAATATAATTC+TGG + contig374end:32472-32491 MsG0080048614.01.T01:intron 15.0%
!! TGGTATAAAAAAAATAACAA+GGG - contig374end:32308-32327 None:intergenic 15.0%
!!! AATTTAAAACATAGTTATCA+GGG + contig374end:31209-31228 MsG0080048614.01.T01:intron 15.0%
!!! TAACATTATAACCTTTTTAT+AGG - contig374end:32694-32713 None:intergenic 15.0%
!!! TAATTTAAAACATAGTTATC+AGG + contig374end:31208-31227 MsG0080048614.01.T01:intron 15.0%
!! AAGAAAAGAAATAAAATGTG+TGG + contig374end:33482-33501 MsG0080048614.01.T01:three_prime_UTR 20.0%
!! AAGATATTTCTTTCTATTCA+GGG + contig374end:32577-32596 MsG0080048614.01.T01:CDS 20.0%
!! ACTAATTTCTAATTATTACC+TGG - contig374end:31701-31720 None:intergenic 20.0%
!! CAATTCACTTTATATATATC+TGG + contig374end:30597-30616 MsG0080048614.01.T01:intron 20.0%
!! CAGATATATATAAAGTGAAT+TGG - contig374end:30599-30618 None:intergenic 20.0%
!! GGTATAAAAAAAATAACAAG+GGG - contig374end:32307-32326 None:intergenic 20.0%
!! GTGATTAAAAAGAAAAAGAA+AGG - contig374end:30694-30713 None:intergenic 20.0%
!! TGAATTCATTACCTATAAAA+AGG + contig374end:32680-32699 MsG0080048614.01.T01:CDS 20.0%
!! TGACAATGAAAACATTATAA+TGG - contig374end:32328-32347 None:intergenic 20.0%
!! TTATAGGTAATGAATTCATT+TGG - contig374end:32678-32697 None:intergenic 20.0%
!! TTTATATATATCTGGAAATC+TGG + contig374end:30605-30624 MsG0080048614.01.T01:intron 20.0%
!!! AAATGAATGATCCAATTTTT+TGG + contig374end:32377-32396 MsG0080048614.01.T01:intron 20.0%
!!! AAATTGATTTCTGAATTCAA+GGG - contig374end:32154-32173 None:intergenic 20.0%
!!! ATTACCTTTAATTTTTGATG+TGG + contig374end:31122-31141 MsG0080048614.01.T01:intron 20.0%
!!! ATTTACTTCACTTTTTTTTG+TGG + contig374end:30571-30590 MsG0080048614.01.T01:intron 20.0%
!!! TAAATTGATTTCTGAATTCA+AGG - contig374end:32155-32174 None:intergenic 20.0%
!!! TAATGTTTTCATTGTCATTT+AGG + contig374end:32331-32350 MsG0080048614.01.T01:intron 20.0%
!!! TATTCTTGTATTTTTGTTTC+AGG + contig374end:31581-31600 MsG0080048614.01.T01:CDS 20.0%
!!! TTTTTTTTCAACAATCTCTT+AGG - contig374end:33241-33260 None:intergenic 20.0%
! AAAAAAAAGCTCAACACAAA+TGG + contig374end:33253-33272 MsG0080048614.01.T01:three_prime_UTR 25.0%
! AAATCAATAATATTAGCAGG+TGG - contig374end:33303-33322 None:intergenic 25.0%
! AAGAAGAATGCTTAATAGAA+TGG - contig374end:32723-32742 None:intergenic 25.0%
! CACTAAAATTAGAGATTCAA+AGG - contig374end:30984-31003 None:intergenic 25.0%
! GAAGATATTTCTTTCTATTC+AGG + contig374end:32576-32595 MsG0080048614.01.T01:CDS 25.0%
! TAATTGTGATAGTATGTTCA+TGG - contig374end:31964-31983 None:intergenic 25.0%
! TGGAAATCAATAATATTAGC+AGG - contig374end:33306-33325 None:intergenic 25.0%
! TTTAATCACAAAACCTTCAA+GGG + contig374end:30705-30724 MsG0080048614.01.T01:intron 25.0%
!! ACAGAAAATTTCTTTTCCAA+AGG + contig374end:30500-30519 MsG0080048614.01.T01:CDS 25.0%
!! TTTTAATCACAAAACCTTCA+AGG + contig374end:30704-30723 MsG0080048614.01.T01:intron 25.0%
!!! ACTGTTATTTTTAAAGGTTG+TGG + contig374end:32281-32300 MsG0080048614.01.T01:intron 25.0%
!!! GCTAATATTATTGATTTCCA+AGG + contig374end:33306-33325 MsG0080048614.01.T01:three_prime_UTR 25.0%
!!! GGGAATACTGTTATTTTTAA+AGG + contig374end:32275-32294 MsG0080048614.01.T01:CDS 25.0%
!!! TTCTTTTTTGGGTTACAAAA+GGG - contig374end:33467-33486 None:intergenic 25.0%
!!! TTTCTTTTTTGGGTTACAAA+AGG - contig374end:33468-33487 None:intergenic 25.0%
AAGAACCAACTGGAAAAATT+TGG - contig374end:31857-31876 None:intergenic 30.0%
ACGTTCAAACAGAAAAAGAA+GGG - contig374end:32234-32253 None:intergenic 30.0%
ATATTTCTTTCTATTCAGGG+AGG + contig374end:32580-32599 MsG0080048614.01.T01:CDS 30.0%
ATGTATAAACAAAAGTCGAC+TGG - contig374end:30954-30973 None:intergenic 30.0%
ATTATAGTTTAGACAGACTC+CGG - contig374end:32465-32484 None:intergenic 30.0%
ATTTCAAAACAAGAACCAAC+TGG - contig374end:31867-31886 None:intergenic 30.0%
CATTCAAGAGTTATTCAACA+GGG - contig374end:30665-30684 None:intergenic 30.0%
GAAAGAAGAAGTTAATGGAA+GGG + contig374end:32255-32274 MsG0080048614.01.T01:CDS 30.0%
GAGCTAATTAAACAAGAACA+TGG - contig374end:32754-32773 None:intergenic 30.0%
TCCAAGTCGTATATATAGTA+AGG - contig374end:31484-31503 None:intergenic 30.0%
TCCTTACTATATATACGACT+TGG + contig374end:31480-31499 MsG0080048614.01.T01:CDS 30.0%
TGCATGCATTATAACAACAA+TGG - contig374end:31370-31389 None:intergenic 30.0%
TGGAGATGTTTAGTATTTGA+GGG - contig374end:31728-31747 None:intergenic 30.0%
TTATTGTTTACGCATATGCT+TGG + contig374end:31328-31347 MsG0080048614.01.T01:intron 30.0%
TTGCTATCAGATCATAAATG+AGG - contig374end:30821-30840 None:intergenic 30.0%
TTGTTGAGTCAATAAACACT+TGG + contig374end:31769-31788 MsG0080048614.01.T01:intron 30.0%
! AGAAATCAATTTAGTTCACG+TGG + contig374end:32162-32181 MsG0080048614.01.T01:intron 30.0%
! ATTTATGTCCGATTTTGTCA+GGG + contig374end:32023-32042 MsG0080048614.01.T01:intron 30.0%
! TATTTATGTCCGATTTTGTC+AGG + contig374end:32022-32041 MsG0080048614.01.T01:intron 30.0%
!! TCAATAAACACTTGGCTTTT+AGG + contig374end:31777-31796 MsG0080048614.01.T01:intron 30.0%
!! TGTTTTCATTGTCATTTAGG+TGG + contig374end:32334-32353 MsG0080048614.01.T01:intron 30.0%
!! TTGTATTTTTGTTTCAGGTG+AGG + contig374end:31586-31605 MsG0080048614.01.T01:intron 30.0%
AAATCAACAGAGTTCATCTC+AGG - contig374end:32104-32123 None:intergenic 35.0%
AATCAACAGAGTTCATCTCA+GGG - contig374end:32103-32122 None:intergenic 35.0%
AATTATGTACAGATGCTGTC+TGG + contig374end:31979-31998 MsG0080048614.01.T01:intron 35.0%
ACAGAAAAGAACGTTCAGAA+GGG - contig374end:32786-32805 None:intergenic 35.0%
ACATCCAATTAGGAAGCTTA+TGG - contig374end:31099-31118 None:intergenic 35.0%
ACGTGGAAAGAAGAAGTTAA+TGG + contig374end:32250-32269 MsG0080048614.01.T01:CDS 35.0%
ACTTTGGCAACAAAACTGTA+CGG - contig374end:33057-33076 None:intergenic 35.0%
AGGTAATCTCACATCCAATT+AGG - contig374end:31109-31128 None:intergenic 35.0%
ATAAGTAGCTGCAGTTAACA+TGG - contig374end:31174-31193 None:intergenic 35.0%
ATAGTAAGGACTTGTACTCT+TGG - contig374end:31470-31489 None:intergenic 35.0%
CAAGGATAATATCACAGAAG+AGG + contig374end:32842-32861 MsG0080048614.01.T01:CDS 35.0%
CACGTTCAAACAGAAAAAGA+AGG - contig374end:32235-32254 None:intergenic 35.0%
CAGAATAGATAGGGATATCA+AGG + contig374end:32914-32933 MsG0080048614.01.T01:CDS 35.0%
CATTCCATAAGCTTCCTAAT+TGG + contig374end:31092-31111 MsG0080048614.01.T01:intron 35.0%
CCCTGCAAAAACAAATTGAA+CGG - contig374end:30378-30397 None:intergenic 35.0%
CGTAGCACATGTAATAACTT+TGG - contig374end:33073-33092 None:intergenic 35.0%
CGTTCAAACAGAAAAAGAAG+GGG - contig374end:32233-32252 None:intergenic 35.0%
CTCCTTCATAAATTCATTCC+AGG + contig374end:31645-31664 MsG0080048614.01.T01:intron 35.0%
CTGGAGATGTTTAGTATTTG+AGG - contig374end:31729-31748 None:intergenic 35.0%
CTTTCTTGCTTATGTGTATG+TGG - contig374end:30792-30811 None:intergenic 35.0%
GATATCACAAAGCAAAACCT+TGG - contig374end:33326-33345 None:intergenic 35.0%
GCATTCAAGAGTTATTCAAC+AGG - contig374end:30666-30685 None:intergenic 35.0%
GGAAAGAAGAAGTTAATGGA+AGG + contig374end:32254-32273 MsG0080048614.01.T01:CDS 35.0%
GGACATAAATAACAACAGAC+AGG - contig374end:32013-32032 None:intergenic 35.0%
GGCTCCACATCAAAAATTAA+AGG - contig374end:31129-31148 None:intergenic 35.0%
GGTATATGATGCTAATCACT+GGG + contig374end:30458-30477 MsG0080048614.01.T01:CDS 35.0%
GTATATGATGCTAATCACTG+GGG + contig374end:30459-30478 MsG0080048614.01.T01:CDS 35.0%
TACAGAAAAGAACGTTCAGA+AGG - contig374end:32787-32806 None:intergenic 35.0%
TCAATCAATGCAGGATTGTT+AGG - contig374end:31071-31090 None:intergenic 35.0%
TCCATGCATAGCCAAAAAAT+TGG - contig374end:32391-32410 None:intergenic 35.0%
TCTCAGAAACAGTTACTAGT+AGG + contig374end:31542-31561 MsG0080048614.01.T01:CDS 35.0%
TTCCTTGCAGATACTCAAAA+GGG + contig374end:30536-30555 MsG0080048614.01.T01:CDS 35.0%
TTTCCTTGCAGATACTCAAA+AGG + contig374end:30535-30554 MsG0080048614.01.T01:CDS 35.0%
! CTTCTTTTTCTGTTTGAACG+TGG + contig374end:32233-32252 MsG0080048614.01.T01:CDS 35.0%
! TCTGAAGCATATTGCTGATA+AGG + contig374end:31015-31034 MsG0080048614.01.T01:intron 35.0%
! TTTTCCAAAGGATCTCTATG+CGG + contig374end:30512-30531 MsG0080048614.01.T01:CDS 35.0%
!! ATATACGACTTGGAACCTTT+TGG + contig374end:31490-31509 MsG0080048614.01.T01:CDS 35.0%
!! CAGATATGGAGTTTTGATCA+AGG - contig374end:32442-32461 None:intergenic 35.0%
!! TATTTTTGTTTCAGGTGAGG+AGG + contig374end:31589-31608 MsG0080048614.01.T01:intron 35.0%
!! TCAAGATCTTACTGACTTCT+TGG + contig374end:30892-30911 MsG0080048614.01.T01:intron 35.0%
!!! CCGTTCAATTTGTTTTTGCA+GGG + contig374end:30375-30394 MsG0080048614.01.T01:CDS 35.0%
!!! TCCAATTTTTTGGCTATGCA+TGG + contig374end:32387-32406 MsG0080048614.01.T01:intron 35.0%
!!! TCCGTTCAATTTGTTTTTGC+AGG + contig374end:30374-30393 MsG0080048614.01.T01:CDS 35.0%
AACTTCCACCTTTCGTAGAA+TGG - contig374end:31397-31416 None:intergenic 40.0%
AAGGACTTGTACTCTTGGAA+AGG - contig374end:31465-31484 None:intergenic 40.0%
ACATCATTCCTTACCTACCT+TGG + contig374end:33106-33125 MsG0080048614.01.T01:three_prime_UTR 40.0%
ACCACTACACATTACTTGAC+GGG + contig374end:30745-30764 MsG0080048614.01.T01:intron 40.0%
AGAGATATTACTATGCCACC+TGG + contig374end:30419-30438 MsG0080048614.01.T01:CDS 40.0%
AGGACTTGTACTCTTGGAAA+GGG - contig374end:31464-31483 None:intergenic 40.0%
AGTAATTGAGCCTCGTAACA+TGG + contig374end:31429-31448 MsG0080048614.01.T01:CDS 40.0%
ATCTATTCTGTCCGCATACA+AGG - contig374end:32904-32923 None:intergenic 40.0%
ATGGAATGCTCAATCAATGC+AGG - contig374end:31080-31099 None:intergenic 40.0%
CAATGCAAAGATAAGAGACG+CGG - contig374end:33414-33433 None:intergenic 40.0%
CACCACTACACATTACTTGA+CGG + contig374end:30744-30763 MsG0080048614.01.T01:intron 40.0%
CAGCAATATGCTTCAGAGTT+TGG - contig374end:31012-31031 None:intergenic 40.0%
CATCCACAGTTTATGCAAAG+TGG - contig374end:33369-33388 None:intergenic 40.0%
CGGTATATGATGCTAATCAC+TGG + contig374end:30457-30476 MsG0080048614.01.T01:CDS 40.0%
GAAAAATTTGGACTGCTCAC+TGG - contig374end:31845-31864 None:intergenic 40.0%
GATCAAAACTCCATATCTGC+CGG + contig374end:32443-32462 MsG0080048614.01.T01:intron 40.0%
GCTATACATTCAAGCTCAAC+TGG - contig374end:31748-31767 None:intergenic 40.0%
GGCCTGGAATGAATTTATGA+AGG - contig374end:31650-31669 None:intergenic 40.0%
GTACATAGACAACCTCAAAG+TGG - contig374end:32127-32146 None:intergenic 40.0%
GTATGCGGACAGAATAGATA+GGG + contig374end:32905-32924 MsG0080048614.01.T01:CDS 40.0%
GTCACTATACGTACACCAAA+AGG - contig374end:31508-31527 None:intergenic 40.0%
GTCATTTAGGTGGTTGTTGT+TGG + contig374end:32344-32363 MsG0080048614.01.T01:intron 40.0%
TAGGTTCTCTGATATTGTCG+TGG + contig374end:33139-33158 MsG0080048614.01.T01:three_prime_UTR 40.0%
TCCTTGCAGATACTCAAAAG+GGG + contig374end:30537-30556 MsG0080048614.01.T01:CDS 40.0%
TCTATTCTGTCCGCATACAA+GGG - contig374end:32903-32922 None:intergenic 40.0%
TCTCACTAATCTCGTTCAAC+AGG - contig374end:32869-32888 None:intergenic 40.0%
TGTATGCGGACAGAATAGAT+AGG + contig374end:32904-32923 MsG0080048614.01.T01:CDS 40.0%
TTAGGAAAGCCAGATCTTTG+AGG + contig374end:31795-31814 MsG0080048614.01.T01:intron 40.0%
TTTGATGTGGAGCCTTGATT+GGG + contig374end:31135-31154 MsG0080048614.01.T01:intron 40.0%
! GAGGATTATTGAGTGCTACT+GGG + contig374end:32599-32618 MsG0080048614.01.T01:CDS 40.0%
! GCAGTCCAAATTTTTCCAGT+TGG + contig374end:31849-31868 MsG0080048614.01.T01:intron 40.0%
! TTTTGATGTGGAGCCTTGAT+TGG + contig374end:31134-31153 MsG0080048614.01.T01:intron 40.0%
!! CTCTGTTGATTTCCACTTTG+AGG + contig374end:32112-32131 MsG0080048614.01.T01:CDS 40.0%
AGATGCCATTCTACGAAAGG+TGG + contig374end:31389-31408 MsG0080048614.01.T01:intron 45.0%
ATGATGCTAATCACTGGGGA+TGG + contig374end:30463-30482 MsG0080048614.01.T01:CDS 45.0%
CAATCAAGTCTCTCTGACAC+AGG + contig374end:30842-30861 MsG0080048614.01.T01:intron 45.0%
CATTCGACTACCCTTGTATG+CGG + contig374end:32890-32909 MsG0080048614.01.T01:CDS 45.0%
CCACAGTTTATGCAAAGTGG+TGG - contig374end:33366-33385 None:intergenic 45.0%
CCACCACTTTGCATAAACTG+TGG + contig374end:33363-33382 MsG0080048614.01.T01:three_prime_UTR 45.0%
CCACTACACATTACTTGACG+GGG + contig374end:30746-30765 MsG0080048614.01.T01:intron 45.0%
CCTTACCTACCTTGGAAAAG+AGG + contig374end:33114-33133 MsG0080048614.01.T01:three_prime_UTR 45.0%
CGGGGAGATGATTATTGACA+CGG + contig374end:30764-30783 MsG0080048614.01.T01:intron 45.0%
CGTCAAGTAATGTGTAGTGG+TGG - contig374end:30746-30765 None:intergenic 45.0%
CTACCTTGGAAAAGAGGTCT+AGG + contig374end:33120-33139 MsG0080048614.01.T01:three_prime_UTR 45.0%
CTGGAAATCTGGAAGATCAG+TGG + contig374end:30616-30635 MsG0080048614.01.T01:intron 45.0%
GAAACCGCATAGAGATCCTT+TGG - contig374end:30519-30538 None:intergenic 45.0%
GACCATCTGATGAATGTGAG+AGG - contig374end:31671-31690 None:intergenic 45.0%
GGAGGATTATTGAGTGCTAC+TGG + contig374end:32598-32617 MsG0080048614.01.T01:CDS 45.0%
GTACGTCATCCTCAAAGATC+TGG - contig374end:31807-31826 None:intergenic 45.0%
TATCAAGGCTCACCAGCATA+TGG + contig374end:32929-32948 MsG0080048614.01.T01:CDS 45.0%
TGCAGATGCCATTCTACGAA+AGG + contig374end:31386-31405 MsG0080048614.01.T01:intron 45.0%
TTGCTCAGTGATCCCAATCA+AGG - contig374end:31150-31169 None:intergenic 45.0%
! ACAGGTAATGCGAAGCATCA+AGG + contig374end:32824-32843 MsG0080048614.01.T01:intron 45.0%
! AGGTGAGGAGGAAAGGTTTT+TGG + contig374end:31601-31620 MsG0080048614.01.T01:intron 45.0%
! ATGTCCGATTTTGTCAGGGT+TGG + contig374end:32027-32046 MsG0080048614.01.T01:intron 45.0%
! CACATGAAGGTCTTCTGAAG+TGG + contig374end:32072-32091 MsG0080048614.01.T01:CDS 45.0%
! CCTCTTTTCCAAGGTAGGTA+AGG - contig374end:33117-33136 None:intergenic 45.0%
! CTAGACCTCTTTTCCAAGGT+AGG - contig374end:33122-33141 None:intergenic 45.0%
! GAACCTAGACCTCTTTTCCA+AGG - contig374end:33126-33145 None:intergenic 45.0%
! TGTCCGATTTTGTCAGGGTT+GGG + contig374end:32028-32047 MsG0080048614.01.T01:intron 45.0%
! TTGTTTCAGGTGAGGAGGAA+AGG + contig374end:31594-31613 MsG0080048614.01.T01:intron 45.0%
!! AACACAAATGGCTCTGAAGC+GGG + contig374end:33265-33284 MsG0080048614.01.T01:three_prime_UTR 45.0%
!! ACCCCTTTTGAGTATCTGCA+AGG - contig374end:30541-30560 None:intergenic 45.0%
!! ATCAGATGGTCTTGTGTTCC+AGG + contig374end:31680-31699 MsG0080048614.01.T01:intron 45.0%
!! CAACACAAATGGCTCTGAAG+CGG + contig374end:33264-33283 MsG0080048614.01.T01:three_prime_UTR 45.0%
!! GATCTTACTGACTTCTTGGC+TGG + contig374end:30896-30915 MsG0080048614.01.T01:intron 45.0%
!! AAAAAAATAATAAAGAAAAT+TGG - contig374end:33197-33216 None:intergenic 5.0%
AAAGATAAGAGACGCGGCAG+TGG - contig374end:33408-33427 None:intergenic 50.0%
ACCAGCATATGGTCTCGTCA+CGG + contig374end:32940-32959 MsG0080048614.01.T01:CDS 50.0%
AGAAGACCTTCATGTGTGCG+AGG - contig374end:32068-32087 None:intergenic 50.0%
AGCATCACTGGGTCTGTATG+CGG + contig374end:32631-32650 MsG0080048614.01.T01:CDS 50.0%
ATGCCACCTGGAAAGCTGAT+GGG + contig374end:30431-30450 MsG0080048614.01.T01:CDS 50.0%
CCCCGTCAAGTAATGTGTAG+TGG - contig374end:30749-30768 None:intergenic 50.0%
CGTCCCAACCCTGACAAAAT+CGG - contig374end:32034-32053 None:intergenic 50.0%
CTACGAAAGGTGGAAGTTGC+TGG + contig374end:31399-31418 MsG0080048614.01.T01:CDS 50.0%
GAAGACCTTCATGTGTGCGA+GGG - contig374end:32067-32086 None:intergenic 50.0%
GCTTCTCGTTCCATGTTACG+AGG - contig374end:31442-31461 None:intergenic 50.0%
GGCCTCTCACATTCATCAGA+TGG + contig374end:31666-31685 MsG0080048614.01.T01:intron 50.0%
GGTCTGTATGCGGATCAGAA+CGG + contig374end:32641-32660 MsG0080048614.01.T01:CDS 50.0%
GGTGTTAACTCACCCTATGG+TGG + contig374end:32183-32202 MsG0080048614.01.T01:intron 50.0%
TAGACAGACTCCGGCAGATA+TGG - contig374end:32456-32475 None:intergenic 50.0%
TATGCCACCTGGAAAGCTGA+TGG + contig374end:30430-30449 MsG0080048614.01.T01:CDS 50.0%
TATGTCCCTCGCACACATGA+AGG + contig374end:32059-32078 MsG0080048614.01.T01:CDS 50.0%
TCATGTGTGCGAGGGACATA+CGG - contig374end:32059-32078 None:intergenic 50.0%
TCTGATGAATGTGAGAGGCC+TGG - contig374end:31666-31685 None:intergenic 50.0%
! CGTGGTGTTAACTCACCCTA+TGG + contig374end:32180-32199 MsG0080048614.01.T01:intron 50.0%
CCTGGAAAGCTGATGGGACA+CGG + contig374end:30437-30456 MsG0080048614.01.T01:CDS 55.0%
TCCCACCTGTCACCACCATA+GGG - contig374end:32198-32217 None:intergenic 55.0%
TGTCCCATCAGCTTTCCAGG+TGG - contig374end:30437-30456 None:intergenic 55.0%
! ACCCTATGGTGGTGACAGGT+GGG + contig374end:32194-32213 MsG0080048614.01.T01:intron 55.0%
! ACTCACCCTATGGTGGTGAC+AGG + contig374end:32190-32209 MsG0080048614.01.T01:intron 55.0%
! CCTTCAAGGGTACACCTGAG+CGG + contig374end:30718-30737 MsG0080048614.01.T01:intron 55.0%
! TGAGTGCTACTGGGATGCTG+CGG + contig374end:32608-32627 MsG0080048614.01.T01:CDS 55.0%
CCGCTCAGGTGTACCCTTGA+AGG - contig374end:30721-30740 None:intergenic 60.0%
CCGTGTCCCATCAGCTTTCC+AGG - contig374end:30440-30459 None:intergenic 60.0%
CTCCCACCTGTCACCACCAT+AGG - contig374end:32199-32218 None:intergenic 60.0%
GCCGTGACGAGACCATATGC+TGG - contig374end:32944-32963 None:intergenic 60.0%
GTGTAGTGGTGGTTCCGCTC+AGG - contig374end:30735-30754 None:intergenic 60.0%
! CACCCTATGGTGGTGACAGG+TGG + contig374end:32193-32212 MsG0080048614.01.T01:intron 60.0%
! GGATGCTGCGGAGCATCACT+GGG + contig374end:32620-32639 MsG0080048614.01.T01:CDS 60.0%
! GGGATGCTGCGGAGCATCAC+TGG + contig374end:32619-32638 MsG0080048614.01.T01:CDS 65.0%
! TGGTGGTGACAGGTGGGAGC+TGG + contig374end:32200-32219 MsG0080048614.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig374end gene 30355 33511 30355 ID=MsG0080048614.01;Name=MsG0080048614.01
contig374end mRNA 30355 33511 30355 ID=MsG0080048614.01.T01;Parent=MsG0080048614.01;Name=MsG0080048614.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.5|0.57|1|0.66|0.71|7|540|303
contig374end exon 32828 33511 32828 ID=MsG0080048614.01.T01:exon:18425;Parent=MsG0080048614.01.T01
contig374end exon 32571 32701 32571 ID=MsG0080048614.01.T01:exon:18424;Parent=MsG0080048614.01.T01
contig374end exon 32212 32296 32212 ID=MsG0080048614.01.T01:exon:18423;Parent=MsG0080048614.01.T01
contig374end exon 32044 32133 32044 ID=MsG0080048614.01.T01:exon:18422;Parent=MsG0080048614.01.T01
contig374end exon 31799 31844 31799 ID=MsG0080048614.01.T01:exon:18421;Parent=MsG0080048614.01.T01
contig374end exon 31391 31602 31391 ID=MsG0080048614.01.T01:exon:18420;Parent=MsG0080048614.01.T01
contig374end exon 30355 30558 30355 ID=MsG0080048614.01.T01:exon:18419;Parent=MsG0080048614.01.T01
contig374end CDS 30355 30558 30355 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 31391 31602 31391 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 31799 31844 31799 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 32044 32133 32044 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 32212 32296 32212 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 32571 32701 32571 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end CDS 32828 32971 32828 ID=MsG0080048614.01.T01:cds;Parent=MsG0080048614.01.T01
contig374end three_prime_UTR 32972 33511 32972 ID=MsG0080048614.01.T01:three_prime_utr;Parent=MsG0080048614.01.T01
Gene Sequence

>MsG0080048614.01.T01

ATGTTGTTGTCAATTGATGTCCGTTCAATTTGTTTTTGCAGGGAAAATTTGCAACTCTTAAGACAGAGATATTACTATGCCACCTGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCCAAAGGATCTCTATGCGGTTTCCTTGCAGATACTCAAAAGGGATGCCATTCTACGAAAGGTGGAAGTTGCTGGAGAAAGAAGTAATTGAGCCTCGTAACATGGAACGAGAAGCCCTTTCCAAGAGTACAAGTCCTTACTATATATACGACTTGGAACCTTTTGGTGTACGTATAGTGACATTTTCGATTCTATTCTCAGAAACAGTTACTAGTAGGATTAGCTATTTGTTTATATTCTTGTATTTTTGTTTCAGGAAAGCCAGATCTTTGAGGATGACGTACAGAATTCATGCTCTGCCAGGTTGGGACGATCCGTATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCACTTTGAGGTGGGAGCTGGTAATCGTCCCCTTCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATGCAGAAGATATTTCTTTCTATTCAGGGAGGATTATTGAGTGCTACTGGGATGCTGCGGAGCATCACTGGGTCTGTATGCGGATCAGAACGGATAAAGCAACTCCAAATGAATTCATTACCTATAAAAAGGTAATGCGAAGCATCAAGGATAATATCACAGAAGAGGTCCTGTTGAACGAGATTAGTGAGATCATTCGACTACCCTTGTATGCGGACAGAATAGATAGGGATATCAAGGCTCACCAGCATATGGTCTCGTCACGGCGCAAGTGA

Protein sequence

>MsG0080048614.01.T01

MLLSIDVRSICFCRENLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFQRISMRFPCRYSKGMPFYERWKLLEKEVIEPRNMEREALSKSTSPYYIYDLEPFGVRIVTFSILFSETVTSRISYLFIFLYFCFRKARSLRMTYRIHALPGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGNRPLLFLFERGKKKLMEGNTVIFKDAEDISFYSGRIIECYWDAAEHHWVCMRIRTDKATPNEFITYKKVMRSIKDNITEEVLLNEISEIIRLPLYADRIDRDIKAHQHMVSSRRK*