AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021294.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021294.01.T01 MTR_4g071010 92.012 338 26 1 1 337 103 440 0.0 609
MsG0480021294.01.T01 MTR_4g071010 92.627 217 15 1 1 216 103 319 7.77e-131 377
MsG0480021294.01.T01 MTR_4g071010 92.627 217 15 1 1 216 103 319 9.97e-131 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021294.01.T01 AT2G38780 55.814 344 143 5 1 339 124 463 1.04e-130 382
MsG0480021294.01.T01 AT2G38780 55.814 344 143 5 1 339 128 467 1.47e-130 381
MsG0480021294.01.T01 AT2G38780 52.589 367 142 6 1 339 128 490 9.12e-126 370
MsG0480021294.01.T01 AT2G38780 57.500 240 95 3 1 236 124 360 1.23e-90 276
MsG0480021294.01.T01 AT2G38780 57.500 240 95 3 1 236 128 364 1.83e-90 275
MsG0480021294.01.T01 AT2G38780 57.983 238 93 3 1 234 128 362 3.81e-90 275
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 124 340 4.20e-75 236
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 4.79e-75 237
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 5.04e-75 235
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 5.04e-75 235
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 5.04e-75 235
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 5.04e-75 235
MsG0480021294.01.T01 AT2G38780 54.545 220 93 3 1 216 128 344 5.04e-75 235

Find 78 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTTGTTCATGTTCA+TGG 0.122466 4:+56388422 MsG0480021294.01.T01:five_prime_UTR
ACAATTCATGTACAGCTTTC+AGG 0.201984 4:+56391247 MsG0480021294.01.T01:CDS
GCTGCTTACAAGAAGAAATA+TGG 0.267605 4:+56390021 MsG0480021294.01.T01:CDS
GAAGGATGGTGACTTCTTAA+TGG 0.279378 4:+56390387 MsG0480021294.01.T01:CDS
CGGTGCTGATGGAGGGAAAA+AGG 0.321282 4:+56388640 MsG0480021294.01.T01:five_prime_UTR
AAGAAGTAGTACAACAAAAT+AGG 0.323300 4:-56392202 None:intergenic
ACACCCCATGTAGAAACTTT+TGG 0.326916 4:-56389772 None:intergenic
ATCTATTAAGTTGTTCAAAC+TGG 0.334529 4:-56392338 None:intergenic
GATTAAATCAAACACTGGTT+TGG 0.341865 4:+56388604 MsG0480021294.01.T01:five_prime_UTR
ATTAAATCAAACACTGGTTT+GGG 0.346110 4:+56388605 MsG0480021294.01.T01:five_prime_UTR
CCTTGACCTGTTCAGTTTGG+AGG 0.348105 4:+56389916 MsG0480021294.01.T01:intron
GTCAATGACTTTCTCATAGT+AGG 0.348199 4:-56390437 None:intergenic
TTTAGAGAGTGAAGAAGAAA+AGG 0.358296 4:+56389966 MsG0480021294.01.T01:CDS
TCATCATCCTTAGTCTGTTC+AGG 0.364395 4:-56389733 None:intergenic
TCTGAGAAGGAGTCTGAAAA+AGG 0.367037 4:-56389637 None:intergenic
TTGAGCCACTTCATCTTTAA+CGG 0.367047 4:-56392131 None:intergenic
ATTGTTAATGATCAAGTCCT+TGG 0.384602 4:+56392295 MsG0480021294.01.T01:three_prime_UTR
TGAGCCACTTCATCTTTAAC+GGG 0.391252 4:-56392130 None:intergenic
TTCTTGCCTACTTTAACACT+TGG 0.395553 4:-56391218 None:intergenic
AAGGAGGGAGTGAGAGTACT+TGG 0.407449 4:+56389491 MsG0480021294.01.T01:CDS
AGAATTGTCTGTTTCAAAGA+TGG 0.414379 4:+56389552 MsG0480021294.01.T01:CDS
CATTGACAAATTACCCTTCA+AGG 0.416440 4:+56390453 MsG0480021294.01.T01:CDS
ATTTAGAAGTTTACCTTGAA+GGG 0.427228 4:-56390466 None:intergenic
ATTGCAATCTTCACAGAAAC+CGG 0.441020 4:-56388668 None:intergenic
TTTGAAATATTGTTAGGTCT+AGG 0.441867 4:-56389799 None:intergenic
TCCTTAGTCTGTTCAGGCTG+TGG 0.450969 4:-56389727 None:intergenic
ATAATATTTATAGGCATTGA+AGG 0.452788 4:+56390369 MsG0480021294.01.T01:intron
TGACAATAGTGTTGGTAAGA+AGG 0.457261 4:+56389528 MsG0480021294.01.T01:CDS
AATTTAGAAGTTTACCTTGA+AGG 0.460312 4:-56390467 None:intergenic
AAGGGGATTGCCACCTGGAC+TGG 0.466766 4:+56389612 MsG0480021294.01.T01:CDS
TGACCTGTTCAGTTTGGAGG+TGG 0.468485 4:+56389919 MsG0480021294.01.T01:intron
CCTGAGGTGGAGCTTATTGT+CGG 0.470019 4:+56389670 MsG0480021294.01.T01:CDS
TCAAGAAAGTGAAATCAATC+AGG 0.474812 4:+56392150 MsG0480021294.01.T01:CDS
TCCACAGCCTGAACAGACTA+AGG 0.482156 4:+56389726 MsG0480021294.01.T01:CDS
GACAATAGTGTTGGTAAGAA+GGG 0.482595 4:+56389529 MsG0480021294.01.T01:CDS
TCAATGACTTTCTCATAGTA+GGG 0.487497 4:-56390436 None:intergenic
GGTGGAAGAACTATACGTCC+TGG 0.503929 4:+56389937 MsG0480021294.01.T01:CDS
TCTGTTAGTGAAACTGATCA+AGG 0.516186 4:+56388728 MsG0480021294.01.T01:CDS
AGGAGGGAGTGAGAGTACTT+GGG 0.519057 4:+56389492 MsG0480021294.01.T01:CDS
TCTTGCCTACTTTAACACTT+GGG 0.521824 4:-56391217 None:intergenic
ATTGAGCAAAACGGTGCTGA+TGG 0.524701 4:+56388629 MsG0480021294.01.T01:five_prime_UTR
TATTTATAGGCATTGAAGGA+TGG 0.534214 4:+56390373 MsG0480021294.01.T01:intron
AAAGTATAAGCAGAATAAAG+AGG 0.535033 4:+56388703 MsG0480021294.01.T01:CDS
ACAAGCCAAAAGTTTCTACA+TGG 0.538624 4:+56389767 MsG0480021294.01.T01:CDS
TATTCAATCTCTGTGTTCCA+AGG 0.551421 4:-56392312 None:intergenic
TCTCACCCAAGTGTTAAAGT+AGG 0.553096 4:+56391212 MsG0480021294.01.T01:CDS
GTGGAAGAACTATACGTCCT+GGG 0.553555 4:+56389938 MsG0480021294.01.T01:CDS
CTACCCCGTTAAAGATGAAG+TGG 0.559497 4:+56392126 MsG0480021294.01.T01:CDS
TAAATGCATCAAAATAACTC+TGG 0.561561 4:-56392087 None:intergenic
GCAGGCTATGGAAATGATGA+AGG 0.561630 4:+56392024 MsG0480021294.01.T01:intron
TGTGAAGATTGCAATGGAGA+AGG 0.563126 4:+56388676 MsG0480021294.01.T01:exon
AAGACAAGGGGATTGCCACC+TGG 0.573117 4:+56389607 MsG0480021294.01.T01:CDS
AGGCAAGTCATCGTCTGAGA+AGG 0.577048 4:-56389650 None:intergenic
CCGACAATAAGCTCCACCTC+AGG 0.579887 4:-56389670 None:intergenic
AGACGATGACTTGCCTGAGG+TGG 0.579966 4:+56389657 MsG0480021294.01.T01:CDS
GAATCGATTAAATCAAACAC+TGG 0.583627 4:+56388599 MsG0480021294.01.T01:five_prime_UTR
AATGGACGCGGGAAAACTGA+AGG 0.586192 4:+56390405 MsG0480021294.01.T01:CDS
AGCAAAACGGTGCTGATGGA+GGG 0.586859 4:+56388633 MsG0480021294.01.T01:five_prime_UTR
GGAGGGAGTGAGAGTACTTG+GGG 0.587353 4:+56389493 MsG0480021294.01.T01:CDS
GAGCAAAACGGTGCTGATGG+AGG 0.587753 4:+56388632 MsG0480021294.01.T01:five_prime_UTR
TGGTGACTTCTTAATGGACG+CGG 0.588889 4:+56390393 MsG0480021294.01.T01:CDS
TCACTCTCTAAAATCTCCCC+AGG 0.590984 4:-56389955 None:intergenic
AATGTGAATGACAATAGTGT+TGG 0.608670 4:+56389520 MsG0480021294.01.T01:CDS
CTTTGCAAACATACCTACTG+AGG 0.611061 4:-56390805 None:intergenic
TTTGTCAAGACTCCCTCAGT+AGG 0.612816 4:+56390792 MsG0480021294.01.T01:CDS
CAAGCCAAAAGTTTCTACAT+GGG 0.621826 4:+56389768 MsG0480021294.01.T01:CDS
CTCAGACGATGACTTGCCTG+AGG 0.631457 4:+56389654 MsG0480021294.01.T01:CDS
GCCCTGCAGAGTGAGCTACA+TGG 0.636806 4:+56390746 MsG0480021294.01.T01:intron
GGTGACTTCTTAATGGACGC+GGG 0.642391 4:+56390394 MsG0480021294.01.T01:CDS
GGTTTGGGAATTGAGCAAAA+CGG 0.642798 4:+56388620 MsG0480021294.01.T01:five_prime_UTR
ATGGATTAGCTGCTTTACAG+TGG 0.643271 4:+56390765 MsG0480021294.01.T01:CDS
CGTTGCGCATGAAACCAACA+AGG 0.659063 4:+56388452 MsG0480021294.01.T01:five_prime_UTR
GGTTTCTGTGAAGATTGCAA+TGG 0.663563 4:+56388670 MsG0480021294.01.T01:exon
TGGAAGAACTATACGTCCTG+GGG 0.672309 4:+56389939 MsG0480021294.01.T01:CDS
AAGCCAAAAGTTTCTACATG+GGG 0.672588 4:+56389769 MsG0480021294.01.T01:CDS
TTTGCAAACATACCTACTGA+GGG 0.676039 4:-56390804 None:intergenic
GAGCCACTTCATCTTTAACG+GGG 0.710162 4:-56392129 None:intergenic
TATGAACCAAGAAAACAACA+AGG 0.765280 4:+56388501 MsG0480021294.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATTTTAATTAA+TGG + Chr4:56388380-56388399 MsG0480021294.01.T01:five_prime_UTR 0.0%
!! AATAAATATAATAATAGGAT+AGG - Chr4:56390986-56391005 None:intergenic 10.0%
!! GAAAAATATTTATTTACAAA+TGG + Chr4:56391630-56391649 MsG0480021294.01.T01:intron 10.0%
!! GAATTCTATATAATATTTAT+AGG + Chr4:56390360-56390379 MsG0480021294.01.T01:intron 10.0%
!! CATTAACAATTAAAAAGAAA+TGG - Chr4:56392285-56392304 None:intergenic 15.0%
!! TATTATTTGCAAAGTAAAAT+TGG - Chr4:56391776-56391795 None:intergenic 15.0%
!! TCATTACAAAATAAATGTAA+CGG + Chr4:56391576-56391595 MsG0480021294.01.T01:intron 15.0%
!!! AAACTATGAAATTTTTAGAA+AGG + Chr4:56391802-56391821 MsG0480021294.01.T01:intron 15.0%
!!! AATAAGATCATACTTATTTT+GGG - Chr4:56389201-56389220 None:intergenic 15.0%
!!! CTAAAAAATGCTTTAAAAAA+GGG - Chr4:56390602-56390621 None:intergenic 15.0%
!!! TAATAAGATCATACTTATTT+TGG - Chr4:56389202-56389221 None:intergenic 15.0%
!!! TATAAACATTGATAATGAAA+AGG + Chr4:56389406-56389425 MsG0480021294.01.T01:intron 15.0%
!!! TTTTACTTTGCAAATAATAA+TGG + Chr4:56391777-56391796 MsG0480021294.01.T01:intron 15.0%
!! AAACTAGGAAAACATATATA+TGG + Chr4:56390682-56390701 MsG0480021294.01.T01:intron 20.0%
!! ATATAGTGATATAGAGTTAT+TGG + Chr4:56389085-56389104 MsG0480021294.01.T01:intron 20.0%
!! ATTCATGAAATAAATCATGT+TGG - Chr4:56390344-56390363 None:intergenic 20.0%
!! TAGGTATAGATAATATAGTT+AGG - Chr4:56390967-56390986 None:intergenic 20.0%
!! TCATCAAATCAAAATATGTT+TGG - Chr4:56391148-56391167 None:intergenic 20.0%
!! TTATTATAAAACGAAGTCAT+TGG + Chr4:56389239-56389258 MsG0480021294.01.T01:intron 20.0%
!! TTCATGAAATAAATCATGTT+GGG - Chr4:56390343-56390362 None:intergenic 20.0%
!!! AATTTATTTTTAGGATTGCA+AGG + Chr4:56389472-56389491 MsG0480021294.01.T01:intron 20.0%
!!! ACTGTTTTTGAAATATTGTT+AGG - Chr4:56389808-56389827 None:intergenic 20.0%
!!! ATAATATTTATAGGCATTGA+AGG + Chr4:56390369-56390388 MsG0480021294.01.T01:intron 20.0%
!!! ATAATTATGAACTGACTTAT+TGG + Chr4:56388753-56388772 MsG0480021294.01.T01:intron 20.0%
!!! ATACTTTTACACTCTTTAAA+AGG - Chr4:56391660-56391679 None:intergenic 20.0%
!!! GCTAAAAAATGCTTTAAAAA+AGG - Chr4:56390603-56390622 None:intergenic 20.0%
!!! TATGAAAGTATTGAATTCAA+AGG - Chr4:56391716-56391735 None:intergenic 20.0%
!!! TCATCAAACTTTTTTATTTG+TGG + Chr4:56391430-56391449 MsG0480021294.01.T01:intron 20.0%
!!! TTTATTCTGCTTATACTTTT+TGG - Chr4:56388702-56388721 None:intergenic 20.0%
! AAAGTATAAGCAGAATAAAG+AGG + Chr4:56388703-56388722 MsG0480021294.01.T01:CDS 25.0%
! AAGAAGTAGTACAACAAAAT+AGG - Chr4:56392205-56392224 None:intergenic 25.0%
! AAGTGCTTAATTAATGTGTT+AGG + Chr4:56388905-56388924 MsG0480021294.01.T01:intron 25.0%
! AATATTCCACAGTAACATTA+TGG + Chr4:56391353-56391372 MsG0480021294.01.T01:intron 25.0%
! AATTTAGAAGTTTACCTTGA+AGG - Chr4:56390470-56390489 None:intergenic 25.0%
! AGCAAAGAAAATCATTACTA+CGG - Chr4:56391923-56391942 None:intergenic 25.0%
! ATTATGTACAAGATGTTTAG+AGG + Chr4:56390487-56390506 MsG0480021294.01.T01:intron 25.0%
! ATTTAGAAGTTTACCTTGAA+GGG - Chr4:56390469-56390488 None:intergenic 25.0%
! GCTTATAGAAAATATGCTTA+TGG + Chr4:56388989-56389008 MsG0480021294.01.T01:intron 25.0%
! GGTAAACATATCATATCTAT+TGG + Chr4:56390083-56390102 MsG0480021294.01.T01:intron 25.0%
! TAAATGCATCAAAATAACTC+TGG - Chr4:56392090-56392109 None:intergenic 25.0%
! TACAAGCTTTCATGTAAAAA+TGG - Chr4:56391739-56391758 None:intergenic 25.0%
! TTGCAATATTTGTTTGCATA+TGG + Chr4:56390162-56390181 MsG0480021294.01.T01:intron 25.0%
!! AAAGGATGGTAAGAATATTT+TGG - Chr4:56390113-56390132 None:intergenic 25.0%
!! AAGGATGGTAAGAATATTTT+GGG - Chr4:56390112-56390131 None:intergenic 25.0%
!! GGTGTTTTGCTTATTATTTA+TGG + Chr4:56391092-56391111 MsG0480021294.01.T01:intron 25.0%
!! TATTAAACGCAAGCTTTTAT+AGG - Chr4:56388562-56388581 None:intergenic 25.0%
!! TTAATTTTACAGTGTAATGC+AGG - Chr4:56391500-56391519 None:intergenic 25.0%
!! TTTGAAATATTGTTAGGTCT+AGG - Chr4:56389802-56389821 None:intergenic 25.0%
!!! ATTAAATCAAACACTGGTTT+GGG + Chr4:56388605-56388624 MsG0480021294.01.T01:five_prime_UTR 25.0%
!!! ATTTTGATTTGATGATTGAC+AGG + Chr4:56391153-56391172 MsG0480021294.01.T01:intron 25.0%
!!! TTCTTAACTTGTTGAAATGA+AGG + Chr4:56390262-56390281 MsG0480021294.01.T01:intron 25.0%
AACCAACAAGGTTAAAAACT+AGG + Chr4:56388464-56388483 MsG0480021294.01.T01:five_prime_UTR 30.0%
AAGGAAAGGGTAAATTTGAA+AGG - Chr4:56389896-56389915 None:intergenic 30.0%
AATGTGAATGACAATAGTGT+TGG + Chr4:56389520-56389539 MsG0480021294.01.T01:CDS 30.0%
ACAAAGCTAGATCGAAATAT+AGG - Chr4:56391857-56391876 None:intergenic 30.0%
AGAAAAACACGCTAAAAAGA+AGG - Chr4:56390136-56390155 None:intergenic 30.0%
AGAATTGTCTGTTTCAAAGA+TGG + Chr4:56389552-56389571 MsG0480021294.01.T01:CDS 30.0%
ATATATCCAGTTTGAACAAC+TGG + Chr4:56392332-56392351 MsG0480021294.01.T01:three_prime_UTR 30.0%
ATGTAGTGTATCATTAGCAA+TGG + Chr4:56390229-56390248 MsG0480021294.01.T01:intron 30.0%
ATTGTTAATGATCAAGTCCT+TGG + Chr4:56392295-56392314 MsG0480021294.01.T01:three_prime_UTR 30.0%
CATATATATGGAGGATTTAG+AGG + Chr4:56390694-56390713 MsG0480021294.01.T01:intron 30.0%
CCAACTAATACAAACCAAAA+GGG + Chr4:56390565-56390584 MsG0480021294.01.T01:intron 30.0%
CTAGGAAAACATATATATGG+AGG + Chr4:56390685-56390704 MsG0480021294.01.T01:intron 30.0%
GAATCGATTAAATCAAACAC+TGG + Chr4:56388599-56388618 MsG0480021294.01.T01:five_prime_UTR 30.0%
TATGAACCAAGAAAACAACA+AGG + Chr4:56388501-56388520 MsG0480021294.01.T01:five_prime_UTR 30.0%
TCAAGAAAGTGAAATCAATC+AGG + Chr4:56392150-56392169 MsG0480021294.01.T01:CDS 30.0%
TCAATGACTTTCTCATAGTA+GGG - Chr4:56390439-56390458 None:intergenic 30.0%
TCATTGAACTCAATAAAGAC+AGG - Chr4:56391302-56391321 None:intergenic 30.0%
TGAAACAAAGTTTAAGCACA+AGG - Chr4:56391898-56391917 None:intergenic 30.0%
TGATGAGTATATGCACTAAT+AGG - Chr4:56391416-56391435 None:intergenic 30.0%
TTCTTTCTTGTTCATGTTCA+TGG + Chr4:56388422-56388441 MsG0480021294.01.T01:five_prime_UTR 30.0%
TTTAGAGAGTGAAGAAGAAA+AGG + Chr4:56389966-56389985 MsG0480021294.01.T01:CDS 30.0%
! GATTAAATCAAACACTGGTT+TGG + Chr4:56388604-56388623 MsG0480021294.01.T01:five_prime_UTR 30.0%
! TAGCATAAGCAAAGTACTTA+TGG - Chr4:56388884-56388903 None:intergenic 30.0%
!! AATGAAAAGGTGTGTACTTT+TGG + Chr4:56389419-56389438 MsG0480021294.01.T01:intron 30.0%
!! GGGTGTCTGAATTTATTTTT+AGG + Chr4:56389463-56389482 MsG0480021294.01.T01:intron 30.0%
!! GTTTCAAAGATGGATTTTGT+GGG + Chr4:56389562-56389581 MsG0480021294.01.T01:CDS 30.0%
!! TATTTATAGGCATTGAAGGA+TGG + Chr4:56390373-56390392 MsG0480021294.01.T01:intron 30.0%
!! TGTTTCAAAGATGGATTTTG+TGG + Chr4:56389561-56389580 MsG0480021294.01.T01:CDS 30.0%
!! TTCCTAGTTTTTAACCTTGT+TGG - Chr4:56388469-56388488 None:intergenic 30.0%
!! TTTCAAAGATGGATTTTGTG+GGG + Chr4:56389563-56389582 MsG0480021294.01.T01:CDS 30.0%
!!! AAGATTCCTTGTTGTTTTCT+TGG - Chr4:56388510-56388529 None:intergenic 30.0%
!!! TATTTTTAGGATTGCAAGGA+GGG + Chr4:56389476-56389495 MsG0480021294.01.T01:intron 30.0%
!!! TTATTTTTAGGATTGCAAGG+AGG + Chr4:56389475-56389494 MsG0480021294.01.T01:intron 30.0%
AAAGCTAAAAATCGAATGCG+AGG + Chr4:56390059-56390078 MsG0480021294.01.T01:CDS 35.0%
AACACGCTAAAAAGAAGGAA+AGG - Chr4:56390131-56390150 None:intergenic 35.0%
AAGCCAAAAGTTTCTACATG+GGG + Chr4:56389769-56389788 MsG0480021294.01.T01:CDS 35.0%
ACAACCTTGCATATGCATAT+TGG - Chr4:56390896-56390915 None:intergenic 35.0%
ACAAGCCAAAAGTTTCTACA+TGG + Chr4:56389767-56389786 MsG0480021294.01.T01:CDS 35.0%
ACAATTCATGTACAGCTTTC+AGG + Chr4:56391247-56391266 MsG0480021294.01.T01:CDS 35.0%
ACATTATGGTGAGATGTGAT+TGG + Chr4:56391367-56391386 MsG0480021294.01.T01:intron 35.0%
AGTCTATGTAGAACATAGCA+TGG - Chr4:56390864-56390883 None:intergenic 35.0%
AGTTAGGTTTCAGCAAAGAA+AGG - Chr4:56390951-56390970 None:intergenic 35.0%
ATCTCACCATAATGTTACTG+TGG - Chr4:56391362-56391381 None:intergenic 35.0%
ATGTACAAGATGTTTAGAGG+TGG + Chr4:56390490-56390509 MsG0480021294.01.T01:intron 35.0%
ATTGCAATCTTCACAGAAAC+CGG - Chr4:56388671-56388690 None:intergenic 35.0%
CAACCTTGCATATGCATATT+GGG - Chr4:56390895-56390914 None:intergenic 35.0%
CAAGCCAAAAGTTTCTACAT+GGG + Chr4:56389768-56389787 MsG0480021294.01.T01:CDS 35.0%
CACAAACAATTGGACTATCT+AGG - Chr4:56389869-56389888 None:intergenic 35.0%
CATTGACAAATTACCCTTCA+AGG + Chr4:56390453-56390472 MsG0480021294.01.T01:CDS 35.0%
CCACAAATAGTGAAGAGATA+GGG - Chr4:56389020-56389039 None:intergenic 35.0%
GAACTCAATAAAGACAGGTA+AGG - Chr4:56391297-56391316 None:intergenic 35.0%
GCATTCAGAGAGATGATATT+AGG - Chr4:56390546-56390565 None:intergenic 35.0%
GCCAACTAATACAAACCAAA+AGG + Chr4:56390564-56390583 MsG0480021294.01.T01:intron 35.0%
GCTGCTTACAAGAAGAAATA+TGG + Chr4:56390021-56390040 MsG0480021294.01.T01:CDS 35.0%
GCTTATATATGAACTCTTGC+AGG + Chr4:56392006-56392025 MsG0480021294.01.T01:intron 35.0%
GTCAATGACTTTCTCATAGT+AGG - Chr4:56390440-56390459 None:intergenic 35.0%
TATAAGCACCCAATTATCTC+CGG - Chr4:56388976-56388995 None:intergenic 35.0%
TATTCAATCTCTGTGTTCCA+AGG - Chr4:56392315-56392334 None:intergenic 35.0%
TCATGACATATACTCTAGCA+GGG + Chr4:56390659-56390678 MsG0480021294.01.T01:intron 35.0%
TCTGTTAGTGAAACTGATCA+AGG + Chr4:56388728-56388747 MsG0480021294.01.T01:CDS 35.0%
TCTTGCCTACTTTAACACTT+GGG - Chr4:56391220-56391239 None:intergenic 35.0%
TGTACAAGATGTTTAGAGGT+GGG + Chr4:56390491-56390510 MsG0480021294.01.T01:intron 35.0%
TGTAGCCAAAGATACAACAA+TGG + Chr4:56389345-56389364 MsG0480021294.01.T01:intron 35.0%
TGTATCTTTGGCTACAATTG+AGG - Chr4:56389341-56389360 None:intergenic 35.0%
TTAGGCCATTGTTGTATCTT+TGG - Chr4:56389353-56389372 None:intergenic 35.0%
TTAGTGAACGAAGTCATAGA+TGG - Chr4:56391042-56391061 None:intergenic 35.0%
TTCGGACAAAAAGAAGACAA+GGG + Chr4:56389594-56389613 MsG0480021294.01.T01:CDS 35.0%
TTCTTGCCTACTTTAACACT+TGG - Chr4:56391221-56391240 None:intergenic 35.0%
TTGAGCCACTTCATCTTTAA+CGG - Chr4:56392134-56392153 None:intergenic 35.0%
TTTCGGACAAAAAGAAGACA+AGG + Chr4:56389593-56389612 MsG0480021294.01.T01:CDS 35.0%
TTTGCAAACATACCTACTGA+GGG - Chr4:56390807-56390826 None:intergenic 35.0%
! TTGCTTCACCTATTTTGCAT+CGG + Chr4:56388950-56388969 MsG0480021294.01.T01:intron 35.0%
!! AAGGTTGTTATTTCAGACTG+GGG + Chr4:56390908-56390927 MsG0480021294.01.T01:intron 35.0%
!! CAAGGTTGTTATTTCAGACT+GGG + Chr4:56390907-56390926 MsG0480021294.01.T01:intron 35.0%
!! GAAAGGCATTCACAAACAAT+TGG - Chr4:56389879-56389898 None:intergenic 35.0%
!! GACAATAGTGTTGGTAAGAA+GGG + Chr4:56389529-56389548 MsG0480021294.01.T01:CDS 35.0%
!! TGACAATAGTGTTGGTAAGA+AGG + Chr4:56389528-56389547 MsG0480021294.01.T01:CDS 35.0%
!! TTGAAATGAAGGCATTCACT+TGG + Chr4:56390273-56390292 MsG0480021294.01.T01:intron 35.0%
!!! ACTTATTTTGGGTGCTTAAG+TGG - Chr4:56389190-56389209 None:intergenic 35.0%
!!! CCCTTTTGGTTTGTATTAGT+TGG - Chr4:56390568-56390587 None:intergenic 35.0%
!!! CTTATTTTGGGTGCTTAAGT+GGG - Chr4:56389189-56389208 None:intergenic 35.0%
!!! GTTTTTTCTGCAAGAAGACT+TGG - Chr4:56389847-56389866 None:intergenic 35.0%
!!! TCGCATTCGATTTTTAGCTT+TGG - Chr4:56390060-56390079 None:intergenic 35.0%
!!! TTATTTTGGGTGCTTAAGTG+GGG - Chr4:56389188-56389207 None:intergenic 35.0%
ACTCCCAATATGCATATGCA+AGG + Chr4:56390889-56390908 MsG0480021294.01.T01:intron 40.0%
AGTGTTAGATGATGTCTACG+AGG + Chr4:56389279-56389298 MsG0480021294.01.T01:intron 40.0%
ATAAAGTGCAACCACAATCG+TGG - Chr4:56389383-56389402 None:intergenic 40.0%
ATATGAACTCTTGCAGGCTA+TGG + Chr4:56392012-56392031 MsG0480021294.01.T01:intron 40.0%
CACAATCGTGGTAGCAATTT+AGG - Chr4:56389371-56389390 None:intergenic 40.0%
CCCTATCTCTTCACTATTTG+TGG + Chr4:56389017-56389036 MsG0480021294.01.T01:intron 40.0%
CCTATACTTCCAAGTCAAAG+AGG - Chr4:56391074-56391093 None:intergenic 40.0%
CGCTAAAAAGAAGGAAAGGA+TGG - Chr4:56390127-56390146 None:intergenic 40.0%
CTAAATTGCTACCACGATTG+TGG + Chr4:56389369-56389388 MsG0480021294.01.T01:intron 40.0%
CTTTGCAAACATACCTACTG+AGG - Chr4:56390808-56390827 None:intergenic 40.0%
GAAGGATGGTGACTTCTTAA+TGG + Chr4:56390387-56390406 MsG0480021294.01.T01:CDS 40.0%
GCCACAAATAGTGAAGAGAT+AGG - Chr4:56389021-56389040 None:intergenic 40.0%
GGTTTCTGTGAAGATTGCAA+TGG + Chr4:56388670-56388689 MsG0480021294.01.T01:exon 40.0%
GGTTTGGGAATTGAGCAAAA+CGG + Chr4:56388620-56388639 MsG0480021294.01.T01:five_prime_UTR 40.0%
GTACAAGATGTTTAGAGGTG+GGG + Chr4:56390492-56390511 MsG0480021294.01.T01:intron 40.0%
GTCATGACATATACTCTAGC+AGG + Chr4:56390658-56390677 MsG0480021294.01.T01:intron 40.0%
TACAAGATGTTTAGAGGTGG+GGG + Chr4:56390493-56390512 MsG0480021294.01.T01:intron 40.0%
TATACTCTAGCAGGGAAACT+AGG + Chr4:56390667-56390686 MsG0480021294.01.T01:intron 40.0%
TCATCATCCTTAGTCTGTTC+AGG - Chr4:56389736-56389755 None:intergenic 40.0%
TCGGACAAAAAGAAGACAAG+GGG + Chr4:56389595-56389614 MsG0480021294.01.T01:CDS 40.0%
TCTCACCCAAGTGTTAAAGT+AGG + Chr4:56391212-56391231 MsG0480021294.01.T01:CDS 40.0%
TCTGAGAAGGAGTCTGAAAA+AGG - Chr4:56389640-56389659 None:intergenic 40.0%
TGAGCCACTTCATCTTTAAC+GGG - Chr4:56392133-56392152 None:intergenic 40.0%
TGTGAAGATTGCAATGGAGA+AGG + Chr4:56388676-56388695 MsG0480021294.01.T01:exon 40.0%
! ACACCCCATGTAGAAACTTT+TGG - Chr4:56389775-56389794 None:intergenic 40.0%
! GGGCAAACAAAATACCCTTT+TGG - Chr4:56390582-56390601 None:intergenic 40.0%
!! ATGGATTAGCTGCTTTACAG+TGG + Chr4:56390765-56390784 MsG0480021294.01.T01:CDS 40.0%
!! CCTCTTTGACTTGGAAGTAT+AGG + Chr4:56391071-56391090 MsG0480021294.01.T01:intron 40.0%
!! GCAAGGTTGTTATTTCAGAC+TGG + Chr4:56390906-56390925 MsG0480021294.01.T01:intron 40.0%
!! TTGTTATTTCAGACTGGGGA+CGG + Chr4:56390912-56390931 MsG0480021294.01.T01:intron 40.0%
CAAACTGAACAGGTCAAGGA+AGG - Chr4:56389915-56389934 None:intergenic 45.0%
CATGCGGTTCGTGCTAAAAT+GGG + Chr4:56389443-56389462 MsG0480021294.01.T01:intron 45.0%
CGCTTCAATCGAAGTTATCG+AGG - Chr4:56389317-56389336 None:intergenic 45.0%
CTACCATAGCCTCTTTGACT+TGG + Chr4:56391062-56391081 MsG0480021294.01.T01:intron 45.0%
CTACCCCGTTAAAGATGAAG+TGG + Chr4:56392126-56392145 MsG0480021294.01.T01:CDS 45.0%
CTTCCAAGTCAAAGAGGCTA+TGG - Chr4:56391068-56391087 None:intergenic 45.0%
CTTCCTTGACCTGTTCAGTT+TGG + Chr4:56389913-56389932 MsG0480021294.01.T01:intron 45.0%
GAACAGGTCAAGGAAGGAAA+GGG - Chr4:56389909-56389928 None:intergenic 45.0%
GAGCCACTTCATCTTTAACG+GGG - Chr4:56392132-56392151 None:intergenic 45.0%
GCAGGCTATGGAAATGATGA+AGG + Chr4:56392024-56392043 MsG0480021294.01.T01:intron 45.0%
GCTAAAAATCGAATGCGAGG+AGG + Chr4:56390062-56390081 MsG0480021294.01.T01:CDS 45.0%
GTGGAAGAACTATACGTCCT+GGG + Chr4:56389938-56389957 MsG0480021294.01.T01:CDS 45.0%
TCATGCGGTTCGTGCTAAAA+TGG + Chr4:56389442-56389461 MsG0480021294.01.T01:intron 45.0%
TCTGAAAAAGGAACCAGTCC+AGG - Chr4:56389628-56389647 None:intergenic 45.0%
TGAACAGGTCAAGGAAGGAA+AGG - Chr4:56389910-56389929 None:intergenic 45.0%
TGGAAGAACTATACGTCCTG+GGG + Chr4:56389939-56389958 MsG0480021294.01.T01:CDS 45.0%
TGGAGGGAAAAAGGATTTGC+CGG + Chr4:56388649-56388668 MsG0480021294.01.T01:five_prime_UTR 45.0%
TTTGTCAAGACTCCCTCAGT+AGG + Chr4:56390792-56390811 MsG0480021294.01.T01:CDS 45.0%
! ATTGAGCAAAACGGTGCTGA+TGG + Chr4:56388629-56388648 MsG0480021294.01.T01:five_prime_UTR 45.0%
! GGTGTGTACTTTTGGTCATG+CGG + Chr4:56389427-56389446 MsG0480021294.01.T01:intron 45.0%
! TGGTGACTTCTTAATGGACG+CGG + Chr4:56390393-56390412 MsG0480021294.01.T01:CDS 45.0%
!! AAGATGGATTTTGTGGGGCT+TGG + Chr4:56389568-56389587 MsG0480021294.01.T01:CDS 45.0%
!! TCACTCTCTAAAATCTCCCC+AGG - Chr4:56389958-56389977 None:intergenic 45.0%
!! TGTTATTTCAGACTGGGGAC+GGG + Chr4:56390913-56390932 MsG0480021294.01.T01:intron 45.0%
!! TTCACCTATTTTGCATCGGC+CGG + Chr4:56388954-56388973 MsG0480021294.01.T01:intron 45.0%
!! TTTTGTGGGGCTTGGCTTTT+CGG + Chr4:56389576-56389595 MsG0480021294.01.T01:CDS 45.0%
!! ATAAGAATAAATATAATAAT+AGG - Chr4:56390991-56391010 None:intergenic 5.0%
!! TAGTAAAATTTATTAAATAA+CGG - Chr4:56389043-56389062 None:intergenic 5.0%
!!! ATATTAAATCAAAATATTTT+TGG + Chr4:56391531-56391550 MsG0480021294.01.T01:intron 5.0%
AATGGACGCGGGAAAACTGA+AGG + Chr4:56390405-56390424 MsG0480021294.01.T01:CDS 50.0%
AGGCAAGTCATCGTCTGAGA+AGG - Chr4:56389653-56389672 None:intergenic 50.0%
ATCCATGTAGCTCACTCTGC+AGG - Chr4:56390751-56390770 None:intergenic 50.0%
ATCTCCGGCCGATGCAAAAT+AGG - Chr4:56388961-56388980 None:intergenic 50.0%
CCTCCAAACTGAACAGGTCA+AGG - Chr4:56389919-56389938 None:intergenic 50.0%
CCTGAGGTGGAGCTTATTGT+CGG + Chr4:56389670-56389689 MsG0480021294.01.T01:CDS 50.0%
CCTTGACCTGTTCAGTTTGG+AGG + Chr4:56389916-56389935 MsG0480021294.01.T01:intron 50.0%
CGTTGCGCATGAAACCAACA+AGG + Chr4:56388452-56388471 MsG0480021294.01.T01:five_prime_UTR 50.0%
CTTCCACCTCCAAACTGAAC+AGG - Chr4:56389925-56389944 None:intergenic 50.0%
GAAAAAGGAACCAGTCCAGG+TGG - Chr4:56389625-56389644 None:intergenic 50.0%
GGTGGAAGAACTATACGTCC+TGG + Chr4:56389937-56389956 MsG0480021294.01.T01:CDS 50.0%
TCCACAGCCTGAACAGACTA+AGG + Chr4:56389726-56389745 MsG0480021294.01.T01:CDS 50.0%
TCCATGTAGCTCACTCTGCA+GGG - Chr4:56390750-56390769 None:intergenic 50.0%
TCCTTAGTCTGTTCAGGCTG+TGG - Chr4:56389730-56389749 None:intergenic 50.0%
TGACCTGTTCAGTTTGGAGG+TGG + Chr4:56389919-56389938 MsG0480021294.01.T01:intron 50.0%
TTATTTCAGACTGGGGACGG+GGG + Chr4:56390915-56390934 MsG0480021294.01.T01:intron 50.0%
! GGTGACTTCTTAATGGACGC+GGG + Chr4:56390394-56390413 MsG0480021294.01.T01:CDS 50.0%
! GTTATTTCAGACTGGGGACG+GGG + Chr4:56390914-56390933 MsG0480021294.01.T01:intron 50.0%
! TGCATCGGCCGGAGATAATT+GGG + Chr4:56388965-56388984 MsG0480021294.01.T01:intron 50.0%
! TTGCATCGGCCGGAGATAAT+TGG + Chr4:56388964-56388983 MsG0480021294.01.T01:intron 50.0%
!! AAGGAGGGAGTGAGAGTACT+TGG + Chr4:56389491-56389510 MsG0480021294.01.T01:CDS 50.0%
!! AGCAAAACGGTGCTGATGGA+GGG + Chr4:56388633-56388652 MsG0480021294.01.T01:five_prime_UTR 50.0%
!! AGGAGGGAGTGAGAGTACTT+GGG + Chr4:56389492-56389511 MsG0480021294.01.T01:CDS 50.0%
AAGACAAGGGGATTGCCACC+TGG + Chr4:56389607-56389626 MsG0480021294.01.T01:CDS 55.0%
CCGACAATAAGCTCCACCTC+AGG - Chr4:56389673-56389692 None:intergenic 55.0%
! AGACGATGACTTGCCTGAGG+TGG + Chr4:56389657-56389676 MsG0480021294.01.T01:CDS 55.0%
! CTCAGACGATGACTTGCCTG+AGG + Chr4:56389654-56389673 MsG0480021294.01.T01:CDS 55.0%
!! CGGTGCTGATGGAGGGAAAA+AGG + Chr4:56388640-56388659 MsG0480021294.01.T01:five_prime_UTR 55.0%
!! GAGCAAAACGGTGCTGATGG+AGG + Chr4:56388632-56388651 MsG0480021294.01.T01:five_prime_UTR 55.0%
!! GGAGGGAGTGAGAGTACTTG+GGG + Chr4:56389493-56389512 MsG0480021294.01.T01:CDS 55.0%
AAGGGGATTGCCACCTGGAC+TGG + Chr4:56389612-56389631 MsG0480021294.01.T01:CDS 60.0%
GCCCTGCAGAGTGAGCTACA+TGG + Chr4:56390746-56390765 MsG0480021294.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56388369 56392352 56388369 ID=MsG0480021294.01;Name=MsG0480021294.01
Chr4 mRNA 56388369 56392352 56388369 ID=MsG0480021294.01.T01;Parent=MsG0480021294.01;Name=MsG0480021294.01.T01;_AED=0.40;_eAED=0.40;_QI=320|1|1|1|1|1|7|82|347
Chr4 exon 56388369 56388749 56388369 ID=MsG0480021294.01.T01:exon:6927;Parent=MsG0480021294.01.T01
Chr4 exon 56389485 56389825 56389485 ID=MsG0480021294.01.T01:exon:6928;Parent=MsG0480021294.01.T01
Chr4 exon 56389931 56390083 56389931 ID=MsG0480021294.01.T01:exon:6929;Parent=MsG0480021294.01.T01
Chr4 exon 56390382 56390474 56390382 ID=MsG0480021294.01.T01:exon:6930;Parent=MsG0480021294.01.T01
Chr4 exon 56390755 56390813 56390755 ID=MsG0480021294.01.T01:exon:6931;Parent=MsG0480021294.01.T01
Chr4 exon 56391175 56391268 56391175 ID=MsG0480021294.01.T01:exon:6932;Parent=MsG0480021294.01.T01
Chr4 exon 56392028 56392352 56392028 ID=MsG0480021294.01.T01:exon:6933;Parent=MsG0480021294.01.T01
Chr4 five_prime_UTR 56388369 56388688 56388369 ID=MsG0480021294.01.T01:five_prime_utr;Parent=MsG0480021294.01.T01
Chr4 CDS 56388689 56388749 56388689 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56389485 56389825 56389485 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56389931 56390083 56389931 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56390382 56390474 56390382 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56390755 56390813 56390755 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56391175 56391268 56391175 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 CDS 56392028 56392270 56392028 ID=MsG0480021294.01.T01:cds;Parent=MsG0480021294.01.T01
Chr4 three_prime_UTR 56392271 56392352 56392271 ID=MsG0480021294.01.T01:three_prime_utr;Parent=MsG0480021294.01.T01
Gene Sequence

>MsG0480021294.01.T01

ATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAGAGGTTTCTGTTAGTGAAACTGATCAAGGATTGCAAGGAGGGAGTGAGAGTACTTGGGGAGAAAATGTGAATGACAATAGTGTTGGTAAGAAGGGAGAATTGTCTGTTTCAAAGATGGATTTTGTGGGGCTTGGCTTTTCGGACAAAAAGAAGACAAGGGGATTGCCACCTGGACTGGTTCCTTTTTCAGACTCCTTCTCAGACGATGACTTGCCTGAGGTGGAGCTTATTGTCGGAGATGCAAACAAATTTGATGCTACAACAACAGCTCCACAGCCTGAACAGACTAAGGATGATGAGTCAGAACTGTACAAGCCAAAAGTTTCTACATGGGGTGTATTTCCTAGACCTAACAATATTTCAAAAACATTTGGAGGTGGAAGAACTATACGTCCTGGGGAGATTTTAGAGAGTGAAGAAGAAAAGGCTGCTAAAGAAGCACGCACGAAGCAGATGCTTGCTGCTTACAAGAAGAAATATGGATTAAATATTGATCCAAAGCTAAAAATCGAATGCGAGGAGGCATTGAAGGATGGTGACTTCTTAATGGACGCGGGAAAACTGAAGGATGCTTTACCCTACTATGAGAAAGTCATTGACAAATTACCCTTCAAGAGTGAGCTACATGGATTAGCTGCTTTACAGTGGTCGATTTGTCAAGACTCCCTCAGTAGGCACAATGAAGCTCGAAGTATGTATGAAAAGCTTCAATCTCACCCAAGTGTTAAAGTAGGCAAGAAAGCAAGACAATTCATGTACAGCTTTCAGGCTATGGAAATGATGAAGGTTAGAACAAGATCTTCTCGTTATTCAAAGAACACATTTTACCAGAGTTATTTTGATGCATTTATCGAAAACAAATCAAACTACCCCGTTAAAGATGAAGTGGCTCAAGAAAGTGAAATCAATCAGGTTTTGCTGTATATTGTTTTTCTCATTTCTCCTATTTTGTTGTACTACTTCTTGCAGTGCAGAAAAGAATATAAATTTCTTTCTTTTGTTTGTATATAA

Protein sequence

>MsG0480021294.01.T01

MEKAKKYKQNKEVSVSETDQGLQGGSESTWGENVNDNSVGKKGELSVSKMDFVGLGFSDKKKTRGLPPGLVPFSDSFSDDDLPEVELIVGDANKFDATTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTFGGGRTIRPGEILESEEEKAAKEARTKQMLAAYKKKYGLNIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSELHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARQFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESEINQVLLYIVFLISPILLYYFLQCRKEYKFLSFVCI*