AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010564.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010564.01.T01 MTR_2g087590 38.813 219 54 9 1 143 146 360 8.34e-28 106
MsG0280010564.01.T01 MTR_1g070230 56.250 48 21 0 1 48 139 186 2.49e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010564.01.T01 AT3G44160 49.367 79 31 2 1 70 146 224 2.21e-17 78.2

Find 49 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCAACCTTCTGCGTTTA+AGG 0.112162 2:-71543818 None:intergenic
AAGCAAAGGACTCTCTATTT+TGG 0.205975 2:+71543771 MsG0280010564.01.T01:CDS
ATTCAGGTAATCCAGCTTTA+AGG 0.210991 2:+71543653 MsG0280010564.01.T01:intron
CTTCGATTTAAATCACAATT+TGG 0.233693 2:+71543714 MsG0280010564.01.T01:CDS
GGTGAAGGAGCAGTTGGTTC+TGG 0.281377 2:+71540767 MsG0280010564.01.T01:CDS
ATGCATTTCATATTGCTATA+TGG 0.287308 2:-71543926 None:intergenic
CATAGCGGTTGCTAAATTCT+TGG 0.306292 2:+71544025 MsG0280010564.01.T01:three_prime_UTR
ACGGGTTTGCTTTGACTTGC+AGG 0.317847 2:+71540029 MsG0280010564.01.T01:CDS
ATCTGGTGTGGATTGGGATA+TGG 0.341424 2:+71543690 MsG0280010564.01.T01:CDS
ACCAGGATCTGGTGTGGATT+GGG 0.394186 2:+71543684 MsG0280010564.01.T01:CDS
TTACAGGTGGTTCAATCGTT+GGG 0.396160 2:+71540687 MsG0280010564.01.T01:CDS
CTCGGAAGTGTCCGAGGGTA+TGG 0.399077 2:+71540746 MsG0280010564.01.T01:CDS
GCAAATGAGTGCAAGTAGAT+TGG 0.439652 2:+71544074 MsG0280010564.01.T01:three_prime_UTR
TGGCAGTCCACATGACAGTA+TGG 0.439822 2:+71540131 MsG0280010564.01.T01:CDS
AACCAGGATCTGGTGTGGAT+TGG 0.450367 2:+71543683 MsG0280010564.01.T01:CDS
GGTTTACCATGCCTTAAAGC+TGG 0.458468 2:-71543664 None:intergenic
GTGAAGGAGCAGTTGGTTCT+GGG 0.468959 2:+71540768 MsG0280010564.01.T01:CDS
ATAGCGAATGACTCTCCCTT+TGG 0.484588 2:+71540810 MsG0280010564.01.T01:CDS
TGGTTCAATCGTTGGGGACA+TGG 0.488806 2:+71540694 MsG0280010564.01.T01:CDS
CTTACAGGTGGTTCAATCGT+TGG 0.500285 2:+71540686 MsG0280010564.01.T01:CDS
AGGCATGGTAAACCAGGATC+TGG 0.504989 2:+71543673 MsG0280010564.01.T01:CDS
ATGATGGTCGCAATATAAGC+AGG 0.509723 2:+71539999 MsG0280010564.01.T01:CDS
CGACACAGATCTATAGAAGA+TGG 0.512840 2:+71543871 MsG0280010564.01.T01:three_prime_UTR
ATATAAGCAGGGATCGTGAC+GGG 0.513332 2:+71540011 MsG0280010564.01.T01:CDS
TCCCAATCCACACCAGATCC+TGG 0.518491 2:-71543685 None:intergenic
GGTAATCCAGCTTTAAGGCA+TGG 0.530911 2:+71543658 MsG0280010564.01.T01:intron
TTGCGACCATCATCATTCAA+TGG 0.538986 2:-71539989 None:intergenic
CTTCTATAGATCTGTGTCGT+GGG 0.539404 2:-71543867 None:intergenic
TGGTTCTGGGAGATCATGCC+TGG 0.541615 2:+71540781 MsG0280010564.01.T01:CDS
GCTTTAAGGCATGGTAAACC+AGG 0.541848 2:+71543667 MsG0280010564.01.T01:CDS
TCTTCTATAGATCTGTGTCG+TGG 0.552954 2:-71543868 None:intergenic
GTCATTCGCTATTAGCCACC+AGG 0.569737 2:-71540799 None:intergenic
CCAATGGAAAATGCTTGGTA+AGG 0.570469 2:-71540719 None:intergenic
CTATTAATGCATTTAAGCAA+AGG 0.572368 2:+71543757 MsG0280010564.01.T01:CDS
CTGCTCCTTCACCATACCCT+CGG 0.582460 2:-71540757 None:intergenic
GTTCGTCCATTGAATGATGA+TGG 0.589877 2:+71539983 MsG0280010564.01.T01:CDS
ATGAAATCCTTAAACGCAGA+AGG 0.596907 2:+71543811 MsG0280010564.01.T01:CDS
AGTGTCCGAGGGTATGGTGA+AGG 0.614703 2:+71540752 MsG0280010564.01.T01:CDS
TACAGGTGGTTCAATCGTTG+GGG 0.618411 2:+71540688 MsG0280010564.01.T01:CDS
TTTCATGAGCAATGTTGCTG+AGG 0.620949 2:-71543794 None:intergenic
GGGTATGGTGAAGGAGCAGT+TGG 0.629254 2:+71540761 MsG0280010564.01.T01:CDS
TGGTAAACCAGGATCTGGTG+TGG 0.636535 2:+71543678 MsG0280010564.01.T01:CDS
AATATAAGCAGGGATCGTGA+CGG 0.648266 2:+71540010 MsG0280010564.01.T01:CDS
CCACCATGCAAAATATAGCG+TGG 0.651347 2:-71543967 None:intergenic
GCAAGAGTCTCAACACACAA+AGG 0.657145 2:+71540164 MsG0280010564.01.T01:CDS
TCGTCTGACAGACTTACAGG+TGG 0.660288 2:+71540674 MsG0280010564.01.T01:intron
TTCTGGGAGATCATGCCTGG+TGG 0.662291 2:+71540784 MsG0280010564.01.T01:CDS
AAGACTACCATACTGTCATG+TGG 0.666248 2:-71540138 None:intergenic
TGATGGTCGCAATATAAGCA+GGG 0.667139 2:+71540000 MsG0280010564.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAAATTATGAATTTTA+AGG + Chr2:71540919-71540938 MsG0280010564.01.T01:intron 10.0%
!! AAAAAAAAACATTTCATTTG+AGG + Chr2:71541830-71541849 MsG0280010564.01.T01:intron 15.0%
!! AAAAAAAAGAAAAAGAAAGA+AGG + Chr2:71543286-71543305 MsG0280010564.01.T01:intron 15.0%
!! AAAATAGAATATTAATGCTT+GGG + Chr2:71540533-71540552 MsG0280010564.01.T01:intron 15.0%
!! ATTGGTATAAACTTTATAAA+GGG + Chr2:71542563-71542582 MsG0280010564.01.T01:intron 15.0%
!! TAAAATAGAATATTAATGCT+TGG + Chr2:71540532-71540551 MsG0280010564.01.T01:intron 15.0%
!! TAATTAAAAAACATCATTTG+AGG + Chr2:71542114-71542133 MsG0280010564.01.T01:intron 15.0%
!! TATAATAAAAAACATTCATG+AGG + Chr2:71541972-71541991 MsG0280010564.01.T01:intron 15.0%
!! TATATAATCACATAGAAATA+GGG - Chr2:71540628-71540647 None:intergenic 15.0%
!! TATTGGTATAAACTTTATAA+AGG + Chr2:71542562-71542581 MsG0280010564.01.T01:intron 15.0%
!! TCTTTAATTATTAAGTATGA+TGG - Chr2:71543108-71543127 None:intergenic 15.0%
!! TTATATAATCACATAGAAAT+AGG - Chr2:71540629-71540648 None:intergenic 15.0%
!!! TTATTATAGCTCTTATTTAA+AGG - Chr2:71542493-71542512 None:intergenic 15.0%
!! AAGATAATAGATAGAACTTT+GGG - Chr2:71541641-71541660 None:intergenic 20.0%
!! AATGTGTATATGTTTAATTG+CGG - Chr2:71541044-71541063 None:intergenic 20.0%
!! AGTTTAAATAGCAAATTTGA+AGG - Chr2:71542434-71542453 None:intergenic 20.0%
!! ATAGATTTCTCATTTCTTTA+GGG - Chr2:71541477-71541496 None:intergenic 20.0%
!! ATTTATACCAGTTATACTTT+AGG + Chr2:71542629-71542648 MsG0280010564.01.T01:intron 20.0%
!! ATTTGAAGATTAAACTGAAA+AGG - Chr2:71540325-71540344 None:intergenic 20.0%
!! TAAGATAATAGATAGAACTT+TGG - Chr2:71541642-71541661 None:intergenic 20.0%
!! TATAGATTTCTCATTTCTTT+AGG - Chr2:71541478-71541497 None:intergenic 20.0%
!! TGTTCAATTTAGCTATTTAA+TGG - Chr2:71541383-71541402 None:intergenic 20.0%
!! TTATGTCAAAATTCAAAAAC+CGG + Chr2:71541683-71541702 MsG0280010564.01.T01:intron 20.0%
!! TTGGTATAAACTTTATAAAG+GGG + Chr2:71542564-71542583 MsG0280010564.01.T01:intron 20.0%
!! TTTAATCTTCAAATAGAACA+AGG + Chr2:71540331-71540350 MsG0280010564.01.T01:intron 20.0%
!!! CGGTTAAATATGTTTATTTT+TGG + Chr2:71541318-71541337 MsG0280010564.01.T01:intron 20.0%
!!! GTTTTTGAATTTTGACATAA+GGG - Chr2:71541683-71541702 None:intergenic 20.0%
!!! TCTAGAACCATTTTATTTAA+GGG + Chr2:71542290-71542309 MsG0280010564.01.T01:intron 20.0%
!!! TTTCATGAATTTTTAATTCC+AGG - Chr2:71541755-71541774 None:intergenic 20.0%
!!! TTTTAAAGACACTTTGTTTA+TGG + Chr2:71544052-71544071 MsG0280010564.01.T01:three_prime_UTR 20.0%
! AAGTTTATGCTTTGTACTTT+AGG - Chr2:71543133-71543152 None:intergenic 25.0%
! AATTCAGATACAAGACTAAT+TGG - Chr2:71540273-71540292 None:intergenic 25.0%
! AGACAAACCCTTAAATAAAA+TGG - Chr2:71542300-71542319 None:intergenic 25.0%
! ATGCATTTCATATTGCTATA+TGG - Chr2:71543929-71543948 None:intergenic 25.0%
! ATTATAATGCCATGCATTAT+AGG - Chr2:71541806-71541825 None:intergenic 25.0%
! ATTATAGGTCAAACTTCAAT+TGG - Chr2:71541791-71541810 None:intergenic 25.0%
! ATTCCTAGTTCCTATTTATA+TGG + Chr2:71540240-71540259 MsG0280010564.01.T01:intron 25.0%
! CTATTAATGCATTTAAGCAA+AGG + Chr2:71543757-71543776 MsG0280010564.01.T01:CDS 25.0%
! CTTCGATTTAAATCACAATT+TGG + Chr2:71543714-71543733 MsG0280010564.01.T01:CDS 25.0%
! TATAATGCCATGCATATATA+TGG - Chr2:71541956-71541975 None:intergenic 25.0%
! TCGTAGCAACAAATTTAAAT+CGG - Chr2:71540390-71540409 None:intergenic 25.0%
! TGGTATAAACTTTATAAAGG+GGG + Chr2:71542565-71542584 MsG0280010564.01.T01:intron 25.0%
! TGGTTAATAGCCATATAAAT+AGG - Chr2:71540253-71540272 None:intergenic 25.0%
! TGTTAATCTCTTGAAAATTC+AGG + Chr2:71543637-71543656 MsG0280010564.01.T01:intron 25.0%
!! CTTTTCATTACAATTCATAG+CGG + Chr2:71544010-71544029 MsG0280010564.01.T01:three_prime_UTR 25.0%
!!! CTCTAGAACCATTTTATTTA+AGG + Chr2:71542289-71542308 MsG0280010564.01.T01:intron 25.0%
!!! GAATTTTTAATTCCAGGTAT+CGG - Chr2:71541749-71541768 None:intergenic 25.0%
!!! GGTTTTTGAATTTTGACATA+AGG - Chr2:71541684-71541703 None:intergenic 25.0%
!!! TTTAAATTTGTTGCTACGAA+AGG + Chr2:71540391-71540410 MsG0280010564.01.T01:intron 25.0%
AAATAGGGTAACTCTATTTC+AGG - Chr2:71540613-71540632 None:intergenic 30.0%
AAATCGTTGGATGTAAATGT+TGG - Chr2:71541292-71541311 None:intergenic 30.0%
AAATGTTCCTCATTAGGTAT+TGG + Chr2:71542545-71542564 MsG0280010564.01.T01:intron 30.0%
AACACTGCAAGCATAAATTA+AGG + Chr2:71541578-71541597 MsG0280010564.01.T01:intron 30.0%
AACAGAACATTACCCTTAAA+AGG + Chr2:71543216-71543235 MsG0280010564.01.T01:intron 30.0%
AACATTGCCTAAAGTATAAC+TGG - Chr2:71542639-71542658 None:intergenic 30.0%
AACTTCAATTGGAGTTCATA+CGG - Chr2:71541780-71541799 None:intergenic 30.0%
AAGACATCAGTTATTTAGCA+CGG - Chr2:71541109-71541128 None:intergenic 30.0%
AATCTCCATTATATGGTTGA+TGG + Chr2:71542059-71542078 MsG0280010564.01.T01:intron 30.0%
ACAGAACATTACCCTTAAAA+GGG + Chr2:71543217-71543236 MsG0280010564.01.T01:intron 30.0%
AGAAAAAGAAAGAAGGTTTG+AGG + Chr2:71543293-71543312 MsG0280010564.01.T01:intron 30.0%
AGAGTATAACCATATGTGTA+AGG - Chr2:71542140-71542159 None:intergenic 30.0%
AGATTCAGGACAAAAACAAT+AGG - Chr2:71541441-71541460 None:intergenic 30.0%
AGCTATTTAATGGTACCAAT+GGG - Chr2:71541373-71541392 None:intergenic 30.0%
ATAACATGTGCTGAAATTCA+CGG - Chr2:71540898-71540917 None:intergenic 30.0%
ATATGGGTTTGATGGAATAA+GGG + Chr2:71542211-71542230 MsG0280010564.01.T01:intron 30.0%
ATGCGTAAATCTCCATTATA+TGG + Chr2:71542194-71542213 MsG0280010564.01.T01:intron 30.0%
ATTATCCACTTAGAAAGAAC+AGG - Chr2:71540361-71540380 None:intergenic 30.0%
ATTCCATCAAACCCATATAA+TGG - Chr2:71542209-71542228 None:intergenic 30.0%
CAGAGTATAACATATGTGTA+AGG - Chr2:71541856-71541875 None:intergenic 30.0%
CCATAAAAATGTTCCTCATT+AGG + Chr2:71542539-71542558 MsG0280010564.01.T01:intron 30.0%
GAGTTAAAAATGCGAGTTTA+TGG + Chr2:71541709-71541728 MsG0280010564.01.T01:intron 30.0%
GATTATATCACTCAAGATTC+AGG - Chr2:71541455-71541474 None:intergenic 30.0%
GCGTAAAATCTCCATTATAT+GGG + Chr2:71541912-71541931 MsG0280010564.01.T01:intron 30.0%
GTATTCCATCAACCATATAA+TGG - Chr2:71542067-71542086 None:intergenic 30.0%
GTTTATACCAATACCTAATG+AGG - Chr2:71542555-71542574 None:intergenic 30.0%
TAGCCATATAAATAGGAACT+AGG - Chr2:71540246-71540265 None:intergenic 30.0%
TAGCTATTTAATGGTACCAA+TGG - Chr2:71541374-71541393 None:intergenic 30.0%
TATAAACTTTATAAAGGGGG+CGG + Chr2:71542568-71542587 MsG0280010564.01.T01:intron 30.0%
TATATGGGTTTGATGGAATA+AGG + Chr2:71542210-71542229 MsG0280010564.01.T01:intron 30.0%
TATTCCATCAACCCATATAA+TGG - Chr2:71541926-71541945 None:intergenic 30.0%
TGCGTAAAATCTCCATTATA+TGG + Chr2:71541911-71541930 MsG0280010564.01.T01:intron 30.0%
TGCGTAAATCTCCATTATAT+GGG + Chr2:71542195-71542214 MsG0280010564.01.T01:intron 30.0%
TGTAAATATTGCGTACCAAA+GGG - Chr2:71540828-71540847 None:intergenic 30.0%
TTCACTATAGACTAAGATGT+TGG + Chr2:71541129-71541148 MsG0280010564.01.T01:intron 30.0%
TTGTAAATATTGCGTACCAA+AGG - Chr2:71540829-71540848 None:intergenic 30.0%
TTTCTGTCAAAATGTGAGAA+TGG + Chr2:71541500-71541519 MsG0280010564.01.T01:intron 30.0%
! ACTGTTTTCATAAGCTATCT+TGG + Chr2:71542781-71542800 MsG0280010564.01.T01:intron 30.0%
! CCTAATGAGGAACATTTTTA+TGG - Chr2:71542542-71542561 None:intergenic 30.0%
!! CTCTATTTCAGGTTGAAATT+AGG - Chr2:71540602-71540621 None:intergenic 30.0%
!!! TTTATGGTCTACTAGTTTTC+TGG - Chr2:71542526-71542545 None:intergenic 30.0%
AAAATGTGAGAATGGTTGGT+TGG + Chr2:71541508-71541527 MsG0280010564.01.T01:intron 35.0%
AACCGGAATACTAAAATCCT+TGG - Chr2:71540058-71540077 None:intergenic 35.0%
ACTTACACCCATAAAAGATC+CGG + Chr2:71541610-71541629 MsG0280010564.01.T01:intron 35.0%
ACTTCAATTGGAGTTCATAC+GGG - Chr2:71541779-71541798 None:intergenic 35.0%
ATAGGAACTAGGAATCAAAC+TGG - Chr2:71540235-71540254 None:intergenic 35.0%
ATGAAATCCTTAAACGCAGA+AGG + Chr2:71543811-71543830 MsG0280010564.01.T01:CDS 35.0%
ATTCAGGTAATCCAGCTTTA+AGG + Chr2:71543653-71543672 MsG0280010564.01.T01:intron 35.0%
CAATTAGAGAAGCAACAATG+CGG + Chr2:71540499-71540518 MsG0280010564.01.T01:intron 35.0%
CAGAGTATACCATATGTGTA+AGG - Chr2:71541998-71542017 None:intergenic 35.0%
CATGACAAAAACAGAAGTTG+TGG - Chr2:71543516-71543535 None:intergenic 35.0%
CGTTTGACCATATATATGCA+TGG + Chr2:71541946-71541965 MsG0280010564.01.T01:intron 35.0%
CTATAGACTAAGATGTTGGA+AGG + Chr2:71541133-71541152 MsG0280010564.01.T01:intron 35.0%
GAAGTTTGACCTATAATGCA+TGG + Chr2:71541794-71541813 MsG0280010564.01.T01:intron 35.0%
GACAGAACTGAACTAAAAGT+AGG + Chr2:71543162-71543181 MsG0280010564.01.T01:intron 35.0%
GAGTACATTGAAATGGTTTC+TGG - Chr2:71543611-71543630 None:intergenic 35.0%
GATATAGAGGAATAGCGTAA+TGG - Chr2:71543441-71543460 None:intergenic 35.0%
GATTGCAACAAATGACGAAT+TGG + Chr2:71542603-71542622 MsG0280010564.01.T01:intron 35.0%
GCAAAATGATATTACTCACC+AGG - Chr2:71541208-71541227 None:intergenic 35.0%
GCTACATAGAGATATTCACA+GGG - Chr2:71541419-71541438 None:intergenic 35.0%
GGAGAGAGCTTATGAAAAAT+TGG - Chr2:71542862-71542881 None:intergenic 35.0%
GTATTCCTGTTCTTTCTAAG+TGG + Chr2:71540353-71540372 MsG0280010564.01.T01:intron 35.0%
TAATGCTTGGGTTCACTAAT+AGG + Chr2:71540545-71540564 MsG0280010564.01.T01:intron 35.0%
TCTCCATTATATGGGTTTGA+TGG + Chr2:71542203-71542222 MsG0280010564.01.T01:intron 35.0%
TGTCAAAATGTGAGAATGGT+TGG + Chr2:71541504-71541523 MsG0280010564.01.T01:intron 35.0%
TTAACCGTGCTAAAAATCGT+TGG - Chr2:71541305-71541324 None:intergenic 35.0%
TTGTCAATAGCACGATATAG+AGG - Chr2:71543454-71543473 None:intergenic 35.0%
TTTGACATAAGGGCTCATTT+GGG - Chr2:71541673-71541692 None:intergenic 35.0%
! AAGCAAAGGACTCTCTATTT+TGG + Chr2:71543771-71543790 MsG0280010564.01.T01:CDS 35.0%
! AGCATGAGAGTACATTGAAA+TGG - Chr2:71543618-71543637 None:intergenic 35.0%
! ATCTCCATTATATGGGTTGA+TGG + Chr2:71541919-71541938 MsG0280010564.01.T01:intron 35.0%
! CTTACCAAGCATTTTCCATT+GGG + Chr2:71540720-71540739 MsG0280010564.01.T01:CDS 35.0%
! GTTTACTTTCTACACCGATT+TGG - Chr2:71543043-71543062 None:intergenic 35.0%
! TTAATGGTACCAATGGGTTT+AGG - Chr2:71541367-71541386 None:intergenic 35.0%
! TTACCAAGCATTTTCCATTG+GGG + Chr2:71540721-71540740 MsG0280010564.01.T01:CDS 35.0%
! TTGTTGTGAGACTCTGATTT+TGG - Chr2:71542927-71542946 None:intergenic 35.0%
! TTTTGACATAAGGGCTCATT+TGG - Chr2:71541674-71541693 None:intergenic 35.0%
!! AGCCAAGGATTTTAGTATTC+CGG + Chr2:71540053-71540072 MsG0280010564.01.T01:intron 35.0%
!! CAGTTCGACATTTTGAAAAC+CGG - Chr2:71540075-71540094 None:intergenic 35.0%
!! CTCGCATTTTTAACTCATTC+CGG - Chr2:71541705-71541724 None:intergenic 35.0%
!! TTGCAGTGTTTTTGCTAACT+CGG - Chr2:71541568-71541587 None:intergenic 35.0%
!!! ACATCCAACGATTTTTAGCA+CGG + Chr2:71541298-71541317 MsG0280010564.01.T01:intron 35.0%
!!! GTTTATTTTTGGTTCTGCTG+AGG + Chr2:71541329-71541348 MsG0280010564.01.T01:intron 35.0%
AACACTTCTCTTGACAAGGT+TGG + Chr2:71540429-71540448 MsG0280010564.01.T01:intron 40.0%
AAGACTACCATACTGTCATG+TGG - Chr2:71540141-71540160 None:intergenic 40.0%
AAGCACTTGCGAGATTGTTT+GGG - Chr2:71542883-71542902 None:intergenic 40.0%
AATATAAGCAGGGATCGTGA+CGG + Chr2:71540010-71540029 MsG0280010564.01.T01:CDS 40.0%
ATAGAGGAATAGCGTAATGG+TGG - Chr2:71543438-71543457 None:intergenic 40.0%
ATGATGGTCGCAATATAAGC+AGG + Chr2:71539999-71540018 MsG0280010564.01.T01:CDS 40.0%
ATTCACAGGGATTTCATCTC+TGG - Chr2:71541406-71541425 None:intergenic 40.0%
CATAGCGGTTGCTAAATTCT+TGG + Chr2:71544025-71544044 MsG0280010564.01.T01:three_prime_UTR 40.0%
CCAATGGAAAATGCTTGGTA+AGG - Chr2:71540722-71540741 None:intergenic 40.0%
CGACACAGATCTATAGAAGA+TGG + Chr2:71543871-71543890 MsG0280010564.01.T01:three_prime_UTR 40.0%
CGCTATTGCAATGACCAAAT+CGG + Chr2:71543026-71543045 MsG0280010564.01.T01:intron 40.0%
CTTCTATAGATCTGTGTCGT+GGG - Chr2:71543870-71543889 None:intergenic 40.0%
CTTTCAAATCAGTCATGCAC+GGG - Chr2:71540976-71540995 None:intergenic 40.0%
GATAGAACTTTGGGTGTAAC+CGG - Chr2:71541632-71541651 None:intergenic 40.0%
GCAAATGAGTGCAAGTAGAT+TGG + Chr2:71544074-71544093 MsG0280010564.01.T01:three_prime_UTR 40.0%
GCTACGAAAGGAATCAAACT+TGG + Chr2:71540403-71540422 MsG0280010564.01.T01:intron 40.0%
GCTTTCAAATCAGTCATGCA+CGG - Chr2:71540977-71540996 None:intergenic 40.0%
GGCTACATAGAGATATTCAC+AGG - Chr2:71541420-71541439 None:intergenic 40.0%
GTGTACATTGCTTATTGCAG+TGG + Chr2:71540111-71540130 MsG0280010564.01.T01:intron 40.0%
GTTCGTCCATTGAATGATGA+TGG + Chr2:71539983-71540002 MsG0280010564.01.T01:CDS 40.0%
TAAGCACTTGCGAGATTGTT+TGG - Chr2:71542884-71542903 None:intergenic 40.0%
TCTTCTATAGATCTGTGTCG+TGG - Chr2:71543871-71543890 None:intergenic 40.0%
TGATGGTCGCAATATAAGCA+GGG + Chr2:71540000-71540019 MsG0280010564.01.T01:CDS 40.0%
TGTAAGTCTGTCAGACGAAA+AGG - Chr2:71540672-71540691 None:intergenic 40.0%
TTACAGGTGGTTCAATCGTT+GGG + Chr2:71540687-71540706 MsG0280010564.01.T01:CDS 40.0%
TTCATGAGGCCTTACACATA+TGG + Chr2:71541986-71542005 MsG0280010564.01.T01:intron 40.0%
TTGCGACCATCATCATTCAA+TGG - Chr2:71539992-71540011 None:intergenic 40.0%
TTTCAAATCAGTCATGCACG+GGG - Chr2:71540975-71540994 None:intergenic 40.0%
TTTCATGAGCAATGTTGCTG+AGG - Chr2:71543797-71543816 None:intergenic 40.0%
! AACCTTGTCAAGAGAAGTGT+TGG - Chr2:71540430-71540449 None:intergenic 40.0%
! ACTCCACGCTATATTTTGCA+TGG + Chr2:71543964-71543983 MsG0280010564.01.T01:three_prime_UTR 40.0%
! CATTTGAGGCCTTACACATA+TGG + Chr2:71541844-71541863 MsG0280010564.01.T01:intron 40.0%
! CCTTACCAAGCATTTTCCAT+TGG + Chr2:71540719-71540738 MsG0280010564.01.T01:CDS 40.0%
! CGGTCATCTGCTTTCTTTTT+CGG - Chr2:71541024-71541043 None:intergenic 40.0%
! CTAAGTGCTATTGCTGACTA+TGG + Chr2:71543380-71543399 MsG0280010564.01.T01:intron 40.0%
! GGTGTAACCGGATCTTTTAT+GGG - Chr2:71541620-71541639 None:intergenic 40.0%
! GTCAATTCGAGCCCTTTTAA+GGG - Chr2:71543231-71543250 None:intergenic 40.0%
! GTGAGACTCTGATTTTGGAT+TGG - Chr2:71542922-71542941 None:intergenic 40.0%
! TACCAAGCATTTTCCATTGG+GGG + Chr2:71540722-71540741 MsG0280010564.01.T01:CDS 40.0%
! TGTCAATTCGAGCCCTTTTA+AGG - Chr2:71543232-71543251 None:intergenic 40.0%
! TTTTCGTCTGACAGACTTAC+AGG + Chr2:71540671-71540690 MsG0280010564.01.T01:intron 40.0%
!! CGATTTGGTCATTGCAATAG+CGG - Chr2:71543028-71543047 None:intergenic 40.0%
!!! TCATCTGCTTTCTTTTTCGG+AGG - Chr2:71541021-71541040 None:intergenic 40.0%
AAACTTTATAAAGGGGGCGG+AGG + Chr2:71542571-71542590 MsG0280010564.01.T01:intron 45.0%
AGGAATAGCGTAATGGTGGT+AGG - Chr2:71543434-71543453 None:intergenic 45.0%
ATAGCGAATGACTCTCCCTT+TGG + Chr2:71540810-71540829 MsG0280010564.01.T01:CDS 45.0%
ATATAAGCAGGGATCGTGAC+GGG + Chr2:71540011-71540030 MsG0280010564.01.T01:CDS 45.0%
CCACCATGCAAAATATAGCG+TGG - Chr2:71543970-71543989 None:intergenic 45.0%
CGCATAGCATCAACCTATAG+CGG + Chr2:71542982-71543001 MsG0280010564.01.T01:intron 45.0%
CGTCCGCTATTACAGTTTCA+GGG - Chr2:71543326-71543345 None:intergenic 45.0%
CTGAAACCACCTAAACCCAT+TGG + Chr2:71541355-71541374 MsG0280010564.01.T01:intron 45.0%
CTTACAGGTGGTTCAATCGT+TGG + Chr2:71540686-71540705 MsG0280010564.01.T01:CDS 45.0%
GACCAACACTTCTCTTGACA+AGG + Chr2:71540425-71540444 MsG0280010564.01.T01:intron 45.0%
GACTAAGATGTTGGAAGGTG+CGG + Chr2:71541138-71541157 MsG0280010564.01.T01:intron 45.0%
GCAAGAGTCTCAACACACAA+AGG + Chr2:71540164-71540183 MsG0280010564.01.T01:CDS 45.0%
GGAATAGCGTAATGGTGGTA+GGG - Chr2:71543433-71543452 None:intergenic 45.0%
GGTTTACCATGCCTTAAAGC+TGG - Chr2:71543667-71543686 None:intergenic 45.0%
GTCAGCAATAGCACTTAGTG+CGG - Chr2:71543378-71543397 None:intergenic 45.0%
TACAGGTGGTTCAATCGTTG+GGG + Chr2:71540688-71540707 MsG0280010564.01.T01:CDS 45.0%
TCGCCCTGAAACTGTAATAG+CGG + Chr2:71543320-71543339 MsG0280010564.01.T01:intron 45.0%
TCTGCAACCTTCTGCGTTTA+AGG - Chr2:71543821-71543840 None:intergenic 45.0%
TGGATTGCGGAACAGATTTG+CGG + Chr2:71541167-71541186 MsG0280010564.01.T01:intron 45.0%
! AATGGTTGGTTGGAGTAGGA+GGG + Chr2:71541518-71541537 MsG0280010564.01.T01:intron 45.0%
! ACCAAGCATTTTCCATTGGG+GGG + Chr2:71540723-71540742 MsG0280010564.01.T01:CDS 45.0%
! AGGGATGGTCTGTTTTGTGT+TGG + Chr2:71541537-71541556 MsG0280010564.01.T01:intron 45.0%
! ATGGTACCAATGGGTTTAGG+TGG - Chr2:71541364-71541383 None:intergenic 45.0%
! CCACGCTATATTTTGCATGG+TGG + Chr2:71543967-71543986 MsG0280010564.01.T01:three_prime_UTR 45.0%
! GGGATGGTCTGTTTTGTGTT+GGG + Chr2:71541538-71541557 MsG0280010564.01.T01:intron 45.0%
! GGGTGTAACCGGATCTTTTA+TGG - Chr2:71541621-71541640 None:intergenic 45.0%
! TGAGAATGGTTGGTTGGAGT+AGG + Chr2:71541514-71541533 MsG0280010564.01.T01:intron 45.0%
!! ATCTGGTGTGGATTGGGATA+TGG + Chr2:71543690-71543709 MsG0280010564.01.T01:CDS 45.0%
!! GCTTTAAGGCATGGTAAACC+AGG + Chr2:71543667-71543686 MsG0280010564.01.T01:CDS 45.0%
!! GGTAATCCAGCTTTAAGGCA+TGG + Chr2:71543658-71543677 MsG0280010564.01.T01:intron 45.0%
!! GGTGCGGTTTTTATGGATTG+CGG + Chr2:71541154-71541173 MsG0280010564.01.T01:intron 45.0%
!! GTTGGAAGGTGCGGTTTTTA+TGG + Chr2:71541147-71541166 MsG0280010564.01.T01:intron 45.0%
!! TGAAACTGTAATAGCGGACG+CGG + Chr2:71543326-71543345 MsG0280010564.01.T01:intron 45.0%
AAAAGGTCATGCGCTCAGTC+AGG - Chr2:71540308-71540327 None:intergenic 50.0%
AAAGGTCATGCGCTCAGTCA+GGG - Chr2:71540307-71540326 None:intergenic 50.0%
AACCAGGATCTGGTGTGGAT+TGG + Chr2:71543683-71543702 MsG0280010564.01.T01:CDS 50.0%
ACCAGGATCTGGTGTGGATT+GGG + Chr2:71543684-71543703 MsG0280010564.01.T01:CDS 50.0%
AGCGTAATGGTGGTAGGGTT+CGG - Chr2:71543428-71543447 None:intergenic 50.0%
AGGCATGGTAAACCAGGATC+TGG + Chr2:71543673-71543692 MsG0280010564.01.T01:CDS 50.0%
ATAGCGGTACAGCAGATAGC+AGG + Chr2:71542998-71543017 MsG0280010564.01.T01:intron 50.0%
CTCTCAGTTTCTCCGATACC+TGG + Chr2:71541734-71541753 MsG0280010564.01.T01:intron 50.0%
GATGCTATGCGACGCTATCT+GGG - Chr2:71542973-71542992 None:intergenic 50.0%
GCGTCCGCTATTACAGTTTC+AGG - Chr2:71543327-71543346 None:intergenic 50.0%
GCTATCTGCTGTACCGCTAT+AGG - Chr2:71542998-71543017 None:intergenic 50.0%
GTCATTCGCTATTAGCCACC+AGG - Chr2:71540802-71540821 None:intergenic 50.0%
GTCTGTCAGACGAAAAGGCA+TGG - Chr2:71540667-71540686 None:intergenic 50.0%
TCGTCTGACAGACTTACAGG+TGG + Chr2:71540674-71540693 MsG0280010564.01.T01:intron 50.0%
TGATGCTATGCGACGCTATC+TGG - Chr2:71542974-71542993 None:intergenic 50.0%
TGGCAGTCCACATGACAGTA+TGG + Chr2:71540131-71540150 MsG0280010564.01.T01:CDS 50.0%
TGGTAAACCAGGATCTGGTG+TGG + Chr2:71543678-71543697 MsG0280010564.01.T01:CDS 50.0%
TGGTTCAATCGTTGGGGACA+TGG + Chr2:71540694-71540713 MsG0280010564.01.T01:CDS 50.0%
! CTATTGCTGACTATGGCTCG+TGG + Chr2:71543387-71543406 MsG0280010564.01.T01:intron 50.0%
! GAATGGTTGGTTGGAGTAGG+AGG + Chr2:71541517-71541536 MsG0280010564.01.T01:intron 50.0%
! GTGAAGGAGCAGTTGGTTCT+GGG + Chr2:71540768-71540787 MsG0280010564.01.T01:CDS 50.0%
!! ACGGGTTTGCTTTGACTTGC+AGG + Chr2:71540029-71540048 MsG0280010564.01.T01:CDS 50.0%
!! CGGACTGGTTATCTTGTACC+TGG + Chr2:71541187-71541206 MsG0280010564.01.T01:intron 50.0%
!! CTTTGACTTGCAGGTAGCCA+AGG + Chr2:71540038-71540057 MsG0280010564.01.T01:intron 50.0%
CTGCTCCTTCACCATACCCT+CGG - Chr2:71540760-71540779 None:intergenic 55.0%
GCCCCCCAATGGAAAATGCT+TGG - Chr2:71540727-71540746 None:intergenic 55.0%
GGGAGCTTCAGTGTCAATGC+AGG + Chr2:71542231-71542250 MsG0280010564.01.T01:intron 55.0%
GGGTATGGTGAAGGAGCAGT+TGG + Chr2:71540761-71540780 MsG0280010564.01.T01:CDS 55.0%
GTTGGTTGGAGTAGGAGGGA+TGG + Chr2:71541522-71541541 MsG0280010564.01.T01:intron 55.0%
TCCCAATCCACACCAGATCC+TGG - Chr2:71543688-71543707 None:intergenic 55.0%
TGCGGAACAGATTTGCGGAC+TGG + Chr2:71541172-71541191 MsG0280010564.01.T01:intron 55.0%
! AGTGTCCGAGGGTATGGTGA+AGG + Chr2:71540752-71540771 MsG0280010564.01.T01:CDS 55.0%
! GCATTTTCCATTGGGGGGCT+CGG + Chr2:71540728-71540747 MsG0280010564.01.T01:CDS 55.0%
! GGTGAAGGAGCAGTTGGTTC+TGG + Chr2:71540767-71540786 MsG0280010564.01.T01:CDS 55.0%
! TTCTGGGAGATCATGCCTGG+TGG + Chr2:71540784-71540803 MsG0280010564.01.T01:CDS 55.0%
!! TGGTTCTGGGAGATCATGCC+TGG + Chr2:71540781-71540800 MsG0280010564.01.T01:CDS 55.0%
!! TGTAATAGCGGACGCGGTAG+CGG + Chr2:71543332-71543351 MsG0280010564.01.T01:intron 55.0%
!! CTCGGAAGTGTCCGAGGGTA+TGG + Chr2:71540746-71540765 MsG0280010564.01.T01:CDS 60.0%
GACACTTCCGAGCCCCCCAA+TGG - Chr2:71540738-71540757 None:intergenic 65.0%
! GCGGACGCGGTAGCGGTTTG+TGG + Chr2:71543339-71543358 MsG0280010564.01.T01:intron 70.0%
!! GGGGGCTCGGAAGTGTCCGA+GGG + Chr2:71540741-71540760 MsG0280010564.01.T01:CDS 70.0%
!! GGGGGGCTCGGAAGTGTCCG+AGG + Chr2:71540740-71540759 MsG0280010564.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 71539974 71544103 71539974 ID=MsG0280010564.01;Name=MsG0280010564.01
Chr2 mRNA 71539974 71544103 71539974 ID=MsG0280010564.01.T01;Parent=MsG0280010564.01;Name=MsG0280010564.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0.33|0.5|1|1|1|4|245|162
Chr2 exon 71539974 71540050 71539974 ID=MsG0280010564.01.T01:exon:6811;Parent=MsG0280010564.01.T01
Chr2 exon 71540131 71540195 71540131 ID=MsG0280010564.01.T01:exon:6812;Parent=MsG0280010564.01.T01
Chr2 exon 71540685 71540831 71540685 ID=MsG0280010564.01.T01:exon:6813;Parent=MsG0280010564.01.T01
Chr2 exon 71543659 71544103 71543659 ID=MsG0280010564.01.T01:exon:6814;Parent=MsG0280010564.01.T01
Chr2 CDS 71539974 71540050 71539974 ID=MsG0280010564.01.T01:cds;Parent=MsG0280010564.01.T01
Chr2 CDS 71540131 71540195 71540131 ID=MsG0280010564.01.T01:cds;Parent=MsG0280010564.01.T01
Chr2 CDS 71540685 71540831 71540685 ID=MsG0280010564.01.T01:cds;Parent=MsG0280010564.01.T01
Chr2 CDS 71543659 71543858 71543659 ID=MsG0280010564.01.T01:cds;Parent=MsG0280010564.01.T01
Chr2 three_prime_UTR 71543859 71544103 71543859 ID=MsG0280010564.01.T01:three_prime_utr;Parent=MsG0280010564.01.T01
Gene Sequence

>MsG0280010564.01.T01

ATGCAGCATGTTCGTCCATTGAATGATGATGGTCGCAATATAAGCAGGGATCGTGACGGGTTTGCTTTGACTTGCAGTGGCAGTCCACATGACAGTATGGTAGTCTTAAAGCAAGAGTCTCAACACACAAAGGCAAACGATCACTTACAGGTGGTTCAATCGTTGGGGACATGGCTCCTTACCAAGCATTTTCCATTGGGGGGCTCGGAAGTGTCCGAGGGTATGGTGAAGGAGCAGTTGGTTCTGGGAGATCATGCCTGGTGGCTAATAGCGAATGACTCTCCCTTTGGTAATCCAGCTTTAAGGCATGGTAAACCAGGATCTGGTGTGGATTGGGATATGGACTTCGATTTAAATCACAATTTGGTCATTTTCAAGTTGATTATGCTATTAATGCATTTAAGCAAAGGACTCTCTATTTTGGCCTCAGCAACATTGCTCATGAAATCCTTAAACGCAGAAGGTTGCAGAACTCTTATTTTCTTGTAG

Protein sequence

>MsG0280010564.01.T01

MQHVRPLNDDGRNISRDRDGFALTCSGSPHDSMVVLKQESQHTKANDHLQVVQSLGTWLLTKHFPLGGSEVSEGMVKEQLVLGDHAWWLIANDSPFGNPALRHGKPGSGVDWDMDFDLNHNLVIFKLIMLLMHLSKGLSILASATLLMKSLNAEGCRTLIFL*