AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030514.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030514.01.T01 MTR_8g432340 86.301 365 13 2 1 335 303 660 0.0 630
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030514.01.T01 AT2G31890 63.793 348 96 1 1 318 320 667 2.23e-160 464

Find 76 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTACTTACTTTAAAT+AGG 0.178036 6:-4460423 MsG0680030514.01.T01:CDS
CTTTATACAGGCGTTCCTTT+AGG 0.284496 6:-4459617 MsG0680030514.01.T01:intron
GCTTGGTCCTATGCTGTCTT+TGG 0.292707 6:-4460382 MsG0680030514.01.T01:CDS
AACTTTACTTACTTTAAATA+GGG 0.303023 6:-4460422 MsG0680030514.01.T01:CDS
ACCGATTTGTTCATTATTGT+TGG 0.305910 6:+4460474 None:intergenic
AAACCCTTTGCTCCTCAAAA+TGG 0.319665 6:+4460314 None:intergenic
CAAAACATTGCTAACATTGC+AGG 0.324391 6:-4460712 MsG0680030514.01.T01:CDS
GTCAAAGAATATGTTGTAGA+TGG 0.342480 6:-4460078 MsG0680030514.01.T01:CDS
AAGAAGTTCGCCTCCAACTT+TGG 0.346703 6:+4460798 None:intergenic
GAAGTTTCTTCTCTTATGTA+TGG 0.347428 6:-4460348 MsG0680030514.01.T01:CDS
GACGTTTCTTAATGATAGTA+TGG 0.351740 6:+4458881 None:intergenic
ATTCCTTGAGCTGAGCATTC+AGG 0.352455 6:+4460844 None:intergenic
TTGTATCTGTTGATCGAAAC+GGG 0.370584 6:-4460450 MsG0680030514.01.T01:CDS
TTGTTAGCACTGGACTTGAA+TGG 0.376921 6:-4460101 MsG0680030514.01.T01:CDS
CACCTACGAAACCTTTCAAT+TGG 0.394489 6:+4460506 None:intergenic
ACACATTTCTCTAGAAATAC+TGG 0.398436 6:-4459997 MsG0680030514.01.T01:intron
TTGAGAGCTGACCTCTTGAT+AGG 0.415647 6:+4459535 None:intergenic
CTATGCTGTCTTTGGACAAA+TGG 0.416506 6:-4460374 MsG0680030514.01.T01:CDS
AGTCGATAAGAAGCTTGCTT+TGG 0.428233 6:-4460034 MsG0680030514.01.T01:CDS
AACTTCGTCGTTTCAGAAAG+AGG 0.432282 6:-4460136 MsG0680030514.01.T01:CDS
GAAATAATTCACACTTTCAA+AGG 0.434691 6:-4460625 MsG0680030514.01.T01:CDS
GGTCATCTTCTTGTTAGCAC+TGG 0.437852 6:-4460111 MsG0680030514.01.T01:CDS
GACAGTTCAGCGAAAAGATC+GGG 0.438484 6:+4460661 None:intergenic
CTGCAGTGGGAGGAACTTCA+AGG 0.440694 6:-4459114 MsG0680030514.01.T01:intron
CGACAGTTCAGCGAAAAGAT+CGG 0.442547 6:+4460660 None:intergenic
AAGGAATCTCAAACATAGCT+TGG 0.457912 6:-4460828 MsG0680030514.01.T01:CDS
AAAGAGATGTCTATGCTTGT+CGG 0.459089 6:-4460886 None:intergenic
TTTCGCTGAACTGTCGAAAA+GGG 0.463715 6:-4460653 MsG0680030514.01.T01:CDS
TGTTAGCACTGGACTTGAAT+GGG 0.465246 6:-4460100 MsG0680030514.01.T01:CDS
CTGAACAGGTGGAGTACCTA+AGG 0.484246 6:-4459086 MsG0680030514.01.T01:CDS
CTTTAAATAGGGATCAGCTT+GGG 0.484370 6:-4460411 MsG0680030514.01.T01:CDS
TCCAACAATAATGAACAAAT+CGG 0.492543 6:-4460475 MsG0680030514.01.T01:CDS
ACTTCAAGGAGGGTCTGAAC+AGG 0.493250 6:-4459100 MsG0680030514.01.T01:CDS
GTCTCTATGCGGTGAGCTTG+AGG 0.498153 6:-4460205 MsG0680030514.01.T01:CDS
GCTTAAACGTCGATACATTA+CGG 0.499114 6:-4459585 MsG0680030514.01.T01:CDS
AGGAATCTCAAACATAGCTT+GGG 0.501827 6:-4460827 MsG0680030514.01.T01:CDS
GAAGATCATTGCCAATTGAA+AGG 0.514433 6:-4460517 MsG0680030514.01.T01:CDS
AAATAATTCACACTTTCAAA+GGG 0.517159 6:-4460624 MsG0680030514.01.T01:CDS
AGATTGCACTGACTAAAGTC+GGG 0.519987 6:-4460747 MsG0680030514.01.T01:CDS
GAGATTGCACTGACTAAAGT+CGG 0.521548 6:-4460748 MsG0680030514.01.T01:CDS
TTAAGCATGGTATGTCCTAA+AGG 0.524947 6:+4459602 None:intergenic
GCTTGGGCGCTGTCCAAAGT+TGG 0.525349 6:-4460811 MsG0680030514.01.T01:CDS
ATCAGCTTGGGACTATAGCT+TGG 0.529050 6:-4460399 MsG0680030514.01.T01:CDS
CGTCGATACATTACGGCTGC+CGG 0.529125 6:-4459578 MsG0680030514.01.T01:CDS
GTTGTATCTGTTGATCGAAA+CGG 0.531354 6:-4460451 MsG0680030514.01.T01:CDS
CAACGATACGAGTTTCCAAC+CGG 0.531834 6:+4459559 None:intergenic
GAGGATAAAGTTTCCAGCGC+TGG 0.535251 6:-4460186 MsG0680030514.01.T01:CDS
GAATCAAATACAGTGTCAGC+AGG 0.536610 6:+4460556 None:intergenic
TGGGCGCTGTCCAAAGTTGG+AGG 0.536614 6:-4460808 MsG0680030514.01.T01:CDS
AGCCTTGTATATTTGTTAGA+CGG 0.543545 6:-4458925 MsG0680030514.01.T01:three_prime_UTR
TCGTCGTTTCAGAAAGAGGT+TGG 0.549276 6:-4460132 MsG0680030514.01.T01:CDS
TTGCCTGAATGCTCAGCTCA+AGG 0.556576 6:-4460847 MsG0680030514.01.T01:CDS
TTCCGTCTAACAAATATACA+AGG 0.558352 6:+4458923 None:intergenic
TCAAAGAATATGTTGTAGAT+GGG 0.560728 6:-4460077 MsG0680030514.01.T01:CDS
TTGAGCTGAGCATTCAGGCA+AGG 0.571147 6:+4460849 None:intergenic
ACTTTAAATAGGGATCAGCT+TGG 0.576268 6:-4460412 MsG0680030514.01.T01:CDS
GATACATTACGGCTGCCGGT+TGG 0.588016 6:-4459574 MsG0680030514.01.T01:CDS
TCAAGGAGGGTCTGAACAGG+TGG 0.593274 6:-4459097 MsG0680030514.01.T01:CDS
AAGCTTGCTTTGGAGATCGA+TGG 0.599041 6:-4460024 MsG0680030514.01.T01:CDS
AGTTTGTCGACTAGCTCAGA+TGG 0.599595 6:+4458841 None:intergenic
TGTTGTAGATGGGTACACTT+TGG 0.603253 6:-4460067 MsG0680030514.01.T01:CDS
CGTATCGTTGTCCTATCAAG+AGG 0.604008 6:-4459546 MsG0680030514.01.T01:intron
TGCCAATTGAAAGGTTTCGT+AGG 0.619703 6:-4460508 MsG0680030514.01.T01:CDS
TGAACAGGTGGAGTACCTAA+GGG 0.653442 6:-4459085 MsG0680030514.01.T01:CDS
AATGTATCGACGTTTAAGCA+TGG 0.653806 6:+4459589 None:intergenic
AGTGGGAGGAACTTCAAGGA+GGG 0.659979 6:-4459110 MsG0680030514.01.T01:CDS
GTATTTCTAGAGAAATGTGT+AGG 0.665375 6:+4460000 None:intergenic
AGCTCAGATGGTCCACCGTG+AGG 0.667839 6:+4458853 None:intergenic
GATTGCACTGACTAAAGTCG+GGG 0.684216 6:-4460746 MsG0680030514.01.T01:CDS
AAGAAACGTCAATAACCTCA+CGG 0.688566 6:-4458868 MsG0680030514.01.T01:three_prime_UTR
CATCTTCAGTTGTCTCTATG+CGG 0.688711 6:-4460216 MsG0680030514.01.T01:intron
CAGTGGGAGGAACTTCAAGG+AGG 0.704463 6:-4459111 MsG0680030514.01.T01:CDS
CATTTGTCCAAAGACAGCAT+AGG 0.705791 6:+4460375 None:intergenic
TGATAACACTACATTGACAG+AGG 0.716733 6:-4459031 MsG0680030514.01.T01:CDS
TGTATCTGTTGATCGAAACG+GGG 0.729772 6:-4460449 MsG0680030514.01.T01:CDS
AAACGTCAATAACCTCACGG+TGG 0.776539 6:-4458865 MsG0680030514.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATATGAATAATAAC+AGG + Chr6:4460368-4460387 None:intergenic 10.0%
!! AACTTTACTTACTTTAAATA+GGG - Chr6:4459251-4459270 MsG0680030514.01.T01:intron 15.0%
!!! ATTTTAATGAAAAAAATGAC+AGG + Chr6:4460204-4460223 None:intergenic 15.0%
!!! TTTTAATGAAAAAAATGACA+GGG + Chr6:4460203-4460222 None:intergenic 15.0%
!! AAATAATTCACACTTTCAAA+GGG - Chr6:4459049-4459068 MsG0680030514.01.T01:CDS 20.0%
!! AAATTGATACAAGAGAAATA+AGG + Chr6:4459988-4460007 None:intergenic 20.0%
!! AATAAAGTCATTGTTTCATA+TGG + Chr6:4459893-4459912 None:intergenic 20.0%
!! AATTAAGTGTTTATCCAAAA+AGG - Chr6:4459952-4459971 MsG0680030514.01.T01:intron 20.0%
!! ATAAAGTCATTGTTTCATAT+GGG + Chr6:4459892-4459911 None:intergenic 20.0%
!! ATTAAGTGTTTATCCAAAAA+GGG - Chr6:4459953-4459972 MsG0680030514.01.T01:intron 20.0%
!! CAACTTTACTTACTTTAAAT+AGG - Chr6:4459250-4459269 MsG0680030514.01.T01:intron 20.0%
!!! AACTATTTCTAGTACTTTAT+AGG - Chr6:4460484-4460503 MsG0680030514.01.T01:CDS 20.0%
!!! ATAAAGTACTAGAAATAGTT+TGG + Chr6:4460484-4460503 None:intergenic 20.0%
!!! ATATGATTTTATGTGTGTTT+TGG - Chr6:4460263-4460282 MsG0680030514.01.T01:intron 20.0%
! CACACATAAAATCATATATG+TGG + Chr6:4460260-4460279 None:intergenic 25.0%
! GAAATAATTCACACTTTCAA+AGG - Chr6:4459048-4459067 MsG0680030514.01.T01:CDS 25.0%
! TCAAAGAATATGTTGTAGAT+GGG - Chr6:4459596-4459615 MsG0680030514.01.T01:CDS 25.0%
! TCCAACAATAATGAACAAAT+CGG - Chr6:4459198-4459217 MsG0680030514.01.T01:intron 25.0%
! TTAACTAAGTAAAATCACTC+AGG - Chr6:4460013-4460032 MsG0680030514.01.T01:CDS 25.0%
!! TATTGTCTTTTCCTTTATAC+AGG - Chr6:4460044-4460063 MsG0680030514.01.T01:CDS 25.0%
!!! AACATTCACAATTTTTTCTG+TGG + Chr6:4460523-4460542 None:intergenic 25.0%
!!! ACTTCTTTACTTTTCAGAAA+TGG - Chr6:4458891-4458910 MsG0680030514.01.T01:three_prime_UTR 25.0%
!!! TTTTAAAGCAGTGGATAAAA+GGG - Chr6:4460441-4460460 MsG0680030514.01.T01:CDS 25.0%
!!! TTTTTAAAGCAGTGGATAAA+AGG - Chr6:4460440-4460459 MsG0680030514.01.T01:CDS 25.0%
AAATAAGCAGCATGCATAAA+CGG + Chr6:4460423-4460442 None:intergenic 30.0%
CTCAAAAATTCAATCCAAAC+AGG + Chr6:4459737-4459756 None:intergenic 30.0%
GAAGTTTCTTCTCTTATGTA+TGG - Chr6:4459325-4459344 MsG0680030514.01.T01:intron 30.0%
GACGTTTCTTAATGATAGTA+TGG + Chr6:4460795-4460814 None:intergenic 30.0%
GTCAAAGAATATGTTGTAGA+TGG - Chr6:4459595-4459614 MsG0680030514.01.T01:CDS 30.0%
TAAAATCATATATGTGGCAG+TGG + Chr6:4460254-4460273 None:intergenic 30.0%
TAATAACAGGTGAAAAATCG+AGG + Chr6:4460355-4460374 None:intergenic 30.0%
TTCCGTCTAACAAATATACA+AGG + Chr6:4460753-4460772 None:intergenic 30.0%
! ACACATTTCTCTAGAAATAC+TGG - Chr6:4459676-4459695 MsG0680030514.01.T01:intron 30.0%
! AGCCTTGTATATTTGTTAGA+CGG - Chr6:4460748-4460767 MsG0680030514.01.T01:CDS 30.0%
! TACTATTTGAGACAACTCAT+CGG - Chr6:4459784-4459803 MsG0680030514.01.T01:intron 30.0%
! TATTGAATTTAGAGCCTGTT+TGG - Chr6:4459720-4459739 MsG0680030514.01.T01:intron 30.0%
!! ACCGATTTGTTCATTATTGT+TGG + Chr6:4459202-4459221 None:intergenic 30.0%
!! GTATTTCTAGAGAAATGTGT+AGG + Chr6:4459676-4459695 None:intergenic 30.0%
!!! ATCATTCAACGTTTTTTGTG+AGG - Chr6:4460672-4460691 MsG0680030514.01.T01:CDS 30.0%
!!! CTTATTTTTATGAGCTCTTC+AGG - Chr6:4459842-4459861 MsG0680030514.01.T01:intron 30.0%
AAGAAACGTCAATAACCTCA+CGG - Chr6:4460805-4460824 MsG0680030514.01.T01:CDS 35.0%
AAGGAATCTCAAACATAGCT+TGG - Chr6:4458845-4458864 MsG0680030514.01.T01:three_prime_UTR 35.0%
ACTTTAAATAGGGATCAGCT+TGG - Chr6:4459261-4459280 MsG0680030514.01.T01:intron 35.0%
AGATATCATGTTTGCTTCTC+AGG - Chr6:4459398-4459417 MsG0680030514.01.T01:intron 35.0%
AGGAATCTCAAACATAGCTT+GGG - Chr6:4458846-4458865 MsG0680030514.01.T01:three_prime_UTR 35.0%
CAAAACATTGCTAACATTGC+AGG - Chr6:4458961-4458980 MsG0680030514.01.T01:three_prime_UTR 35.0%
CTTTAAATAGGGATCAGCTT+GGG - Chr6:4459262-4459281 MsG0680030514.01.T01:intron 35.0%
GAAGATCATTGCCAATTGAA+AGG - Chr6:4459156-4459175 MsG0680030514.01.T01:intron 35.0%
GCTTAAACGTCGATACATTA+CGG - Chr6:4460088-4460107 MsG0680030514.01.T01:CDS 35.0%
GTGGTATAAGATCAACTTCA+TGG + Chr6:4460235-4460254 None:intergenic 35.0%
GTTGTATCTGTTGATCGAAA+CGG - Chr6:4459222-4459241 MsG0680030514.01.T01:intron 35.0%
TGATAACACTACATTGACAG+AGG - Chr6:4460642-4460661 MsG0680030514.01.T01:CDS 35.0%
TGCATAAACGGATAAACTGA+TGG + Chr6:4460411-4460430 None:intergenic 35.0%
TGTTTCCAAAGAGTGAAACT+TGG + Chr6:4460314-4460333 None:intergenic 35.0%
TTAAGCATGGTATGTCCTAA+AGG + Chr6:4460074-4460093 None:intergenic 35.0%
TTGTATCTGTTGATCGAAAC+GGG - Chr6:4459223-4459242 MsG0680030514.01.T01:intron 35.0%
! AAGGATACTAAGTCCCTTTT+TGG + Chr6:4459969-4459988 None:intergenic 35.0%
! AATGTATCGACGTTTAAGCA+TGG + Chr6:4460087-4460106 None:intergenic 35.0%
! TTTTTATGAGCTCTTCAGGA+TGG - Chr6:4459846-4459865 MsG0680030514.01.T01:intron 35.0%
!!! AACGTTTTTTGTGAGGTATC+GGG - Chr6:4460679-4460698 MsG0680030514.01.T01:CDS 35.0%
!!! CAACGTTTTTTGTGAGGTAT+CGG - Chr6:4460678-4460697 MsG0680030514.01.T01:CDS 35.0%
!!! GATCTTTTAGAATGTCCCTT+AGG + Chr6:4460606-4460625 None:intergenic 35.0%
!!! GCTGCTTATTTTTAAAGCAG+TGG - Chr6:4460432-4460451 MsG0680030514.01.T01:CDS 35.0%
AAACCCTTTGCTCCTCAAAA+TGG + Chr6:4459362-4459381 None:intergenic 40.0%
AAAGGGTTTCAGAGCTGTAT+CGG - Chr6:4459373-4459392 MsG0680030514.01.T01:intron 40.0%
AACTTCGTCGTTTCAGAAAG+AGG - Chr6:4459537-4459556 MsG0680030514.01.T01:intron 40.0%
CACCTACGAAACCTTTCAAT+TGG + Chr6:4459170-4459189 None:intergenic 40.0%
CATAGAGACAACTGAAGATG+TGG + Chr6:4459457-4459476 None:intergenic 40.0%
CATCTTCAGTTGTCTCTATG+CGG - Chr6:4459457-4459476 MsG0680030514.01.T01:intron 40.0%
CATTTGTCCAAAGACAGCAT+AGG + Chr6:4459301-4459320 None:intergenic 40.0%
CTAAAGGAACGCCTGTATAA+AGG + Chr6:4460058-4460077 None:intergenic 40.0%
CTATGCTGTCTTTGGACAAA+TGG - Chr6:4459299-4459318 MsG0680030514.01.T01:intron 40.0%
CTTTATACAGGCGTTCCTTT+AGG - Chr6:4460056-4460075 MsG0680030514.01.T01:CDS 40.0%
GAATCAAATACAGTGTCAGC+AGG + Chr6:4459120-4459139 None:intergenic 40.0%
GTCTTCCAAGTTTCACTCTT+TGG - Chr6:4460306-4460325 MsG0680030514.01.T01:intron 40.0%
TGCCAATTGAAAGGTTTCGT+AGG - Chr6:4459165-4459184 MsG0680030514.01.T01:intron 40.0%
TGTATCTGTTGATCGAAACG+GGG - Chr6:4459224-4459243 MsG0680030514.01.T01:intron 40.0%
TGTTGTAGATGGGTACACTT+TGG - Chr6:4459606-4459625 MsG0680030514.01.T01:CDS 40.0%
TTTCGCTGAACTGTCGAAAA+GGG - Chr6:4459020-4459039 MsG0680030514.01.T01:exon 40.0%
! AAGAACTTGCACAGCTTTTG+TGG - Chr6:4459073-4459092 MsG0680030514.01.T01:CDS 40.0%
! AGAACTTGCACAGCTTTTGT+GGG - Chr6:4459074-4459093 MsG0680030514.01.T01:CDS 40.0%
! AGTCGATAAGAAGCTTGCTT+TGG - Chr6:4459639-4459658 MsG0680030514.01.T01:intron 40.0%
! GGAATTCAAGTTTCAAGCAC+TGG + Chr6:4459436-4459455 None:intergenic 40.0%
! TGTTAGCACTGGACTTGAAT+GGG - Chr6:4459573-4459592 MsG0680030514.01.T01:CDS 40.0%
! TTGTTAGCACTGGACTTGAA+TGG - Chr6:4459572-4459591 MsG0680030514.01.T01:CDS 40.0%
! TTTTCGCTGAACTGTCGAAA+AGG - Chr6:4459019-4459038 MsG0680030514.01.T01:exon 40.0%
!! AGATTGCACTGACTAAAGTC+GGG - Chr6:4458926-4458945 MsG0680030514.01.T01:three_prime_UTR 40.0%
!! GAAAACTCTCAGCCATTTTG+AGG - Chr6:4459347-4459366 MsG0680030514.01.T01:intron 40.0%
!! GAGATTGCACTGACTAAAGT+CGG - Chr6:4458925-4458944 MsG0680030514.01.T01:three_prime_UTR 40.0%
!! TTCAAGCACTGGTTACAAGA+TGG + Chr6:4459425-4459444 None:intergenic 40.0%
!!! ACGTTTTTTGTGAGGTATCG+GGG - Chr6:4460680-4460699 MsG0680030514.01.T01:CDS 40.0%
AAACGTCAATAACCTCACGG+TGG - Chr6:4460808-4460827 MsG0680030514.01.T01:CDS 45.0%
AAGAAGTTCGCCTCCAACTT+TGG + Chr6:4458878-4458897 None:intergenic 45.0%
AAGGGTTTCAGAGCTGTATC+GGG - Chr6:4459374-4459393 MsG0680030514.01.T01:intron 45.0%
ATCAGCTTGGGACTATAGCT+TGG - Chr6:4459274-4459293 MsG0680030514.01.T01:intron 45.0%
ATTCCTTGAGCTGAGCATTC+AGG + Chr6:4458832-4458851 None:intergenic 45.0%
CAACGATACGAGTTTCCAAC+CGG + Chr6:4460117-4460136 None:intergenic 45.0%
CGACAGTTCAGCGAAAAGAT+CGG + Chr6:4459016-4459035 None:intergenic 45.0%
CGTATCGTTGTCCTATCAAG+AGG - Chr6:4460127-4460146 MsG0680030514.01.T01:CDS 45.0%
GACAGTTCAGCGAAAAGATC+GGG + Chr6:4459015-4459034 None:intergenic 45.0%
GCACTTTACTTTCCTGCAGT+GGG - Chr6:4460546-4460565 MsG0680030514.01.T01:CDS 45.0%
GGTCATCTTCTTGTTAGCAC+TGG - Chr6:4459562-4459581 MsG0680030514.01.T01:CDS 45.0%
TCGTCGTTTCAGAAAGAGGT+TGG - Chr6:4459541-4459560 MsG0680030514.01.T01:intron 45.0%
TGCACTTTACTTTCCTGCAG+TGG - Chr6:4460545-4460564 MsG0680030514.01.T01:CDS 45.0%
TTGAGAGCTGACCTCTTGAT+AGG + Chr6:4460141-4460160 None:intergenic 45.0%
! AGTTTGTCGACTAGCTCAGA+TGG + Chr6:4460835-4460854 None:intergenic 45.0%
! TGAACAGGTGGAGTACCTAA+GGG - Chr6:4460588-4460607 MsG0680030514.01.T01:CDS 45.0%
!! AAGCTTGCTTTGGAGATCGA+TGG - Chr6:4459649-4459668 MsG0680030514.01.T01:intron 45.0%
!! CAGCCATTTTGAGGAGCAAA+GGG - Chr6:4459356-4459375 MsG0680030514.01.T01:intron 45.0%
!! GATTGCACTGACTAAAGTCG+GGG - Chr6:4458927-4458946 MsG0680030514.01.T01:three_prime_UTR 45.0%
!! TCAGCCATTTTGAGGAGCAA+AGG - Chr6:4459355-4459374 MsG0680030514.01.T01:intron 45.0%
!!! CGTTTTTTGTGAGGTATCGG+GGG - Chr6:4460681-4460700 MsG0680030514.01.T01:CDS 45.0%
ACTTCAAGGAGGGTCTGAAC+AGG - Chr6:4460573-4460592 MsG0680030514.01.T01:CDS 50.0%
AGTGGGAGGAACTTCAAGGA+GGG - Chr6:4460563-4460582 MsG0680030514.01.T01:CDS 50.0%
CTTTACTTTCCTGCAGTGGG+AGG - Chr6:4460549-4460568 MsG0680030514.01.T01:CDS 50.0%
GAGGATAAAGTTTCCAGCGC+TGG - Chr6:4459487-4459506 MsG0680030514.01.T01:intron 50.0%
GCTTGGTCCTATGCTGTCTT+TGG - Chr6:4459291-4459310 MsG0680030514.01.T01:intron 50.0%
TTGAGCTGAGCATTCAGGCA+AGG + Chr6:4458827-4458846 None:intergenic 50.0%
TTGCCTGAATGCTCAGCTCA+AGG - Chr6:4458826-4458845 MsG0680030514.01.T01:three_prime_UTR 50.0%
! CCAGCGCTGGAAAAACGAAA+AGG - Chr6:4459500-4459519 MsG0680030514.01.T01:intron 50.0%
! CTGAACAGGTGGAGTACCTA+AGG - Chr6:4460587-4460606 MsG0680030514.01.T01:CDS 50.0%
!! CCTTTTCGTTTTTCCAGCGC+TGG + Chr6:4459503-4459522 None:intergenic 50.0%
CAGTGGGAGGAACTTCAAGG+AGG - Chr6:4460562-4460581 MsG0680030514.01.T01:CDS 55.0%
CGTCGATACATTACGGCTGC+CGG - Chr6:4460095-4460114 MsG0680030514.01.T01:CDS 55.0%
CTGCAGTGGGAGGAACTTCA+AGG - Chr6:4460559-4460578 MsG0680030514.01.T01:CDS 55.0%
CTTGAAGTTCCTCCCACTGC+AGG + Chr6:4460561-4460580 None:intergenic 55.0%
GATACATTACGGCTGCCGGT+TGG - Chr6:4460099-4460118 MsG0680030514.01.T01:CDS 55.0%
GTCTCTATGCGGTGAGCTTG+AGG - Chr6:4459468-4459487 MsG0680030514.01.T01:intron 55.0%
TCAAGGAGGGTCTGAACAGG+TGG - Chr6:4460576-4460595 MsG0680030514.01.T01:CDS 55.0%
AGCTCAGATGGTCCACCGTG+AGG + Chr6:4460823-4460842 None:intergenic 60.0%
! GCTTGGGCGCTGTCCAAAGT+TGG - Chr6:4458862-4458881 MsG0680030514.01.T01:three_prime_UTR 60.0%
! TGGGCGCTGTCCAAAGTTGG+AGG - Chr6:4458865-4458884 MsG0680030514.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 4458793 4460902 4458793 ID=MsG0680030514.01;Name=MsG0680030514.01
Chr6 mRNA 4458793 4460902 4458793 ID=MsG0680030514.01.T01;Parent=MsG0680030514.01;Name=MsG0680030514.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.66|0.5|1|1|1|4|230|335
Chr6 exon 4460318 4460902 4460318 ID=MsG0680030514.01.T01:exon:12471;Parent=MsG0680030514.01.T01
Chr6 exon 4459998 4460229 4459998 ID=MsG0680030514.01.T01:exon:12472;Parent=MsG0680030514.01.T01
Chr6 exon 4459547 4459629 4459547 ID=MsG0680030514.01.T01:exon:12473;Parent=MsG0680030514.01.T01
Chr6 exon 4458793 4459130 4458793 ID=MsG0680030514.01.T01:exon:12474;Parent=MsG0680030514.01.T01
Chr6 CDS 4460318 4460902 4460318 ID=MsG0680030514.01.T01:cds;Parent=MsG0680030514.01.T01
Chr6 CDS 4459998 4460229 4459998 ID=MsG0680030514.01.T01:cds;Parent=MsG0680030514.01.T01
Chr6 CDS 4459547 4459629 4459547 ID=MsG0680030514.01.T01:cds;Parent=MsG0680030514.01.T01
Chr6 CDS 4459023 4459130 4459023 ID=MsG0680030514.01.T01:cds;Parent=MsG0680030514.01.T01
Chr6 three_prime_UTR 4458793 4459022 4458793 ID=MsG0680030514.01.T01:three_prime_utr;Parent=MsG0680030514.01.T01
Gene Sequence

>MsG0680030514.01.T01

ATGTCTATGCTTGTCGGCGTTGCAATGACAGCCTTGCCTGAATGCTCAGCTCAAGGAATCTCAAACATAGCTTGGGCGCTGTCCAAAGTTGGAGGCGAACTTCTTTACTTTTCAGAAATGGATAGAATTGCAGAGATTGCACTGACTAAAGTCGGGGAATTAAACTCTCAAAACATTGCTAACATTGCAGGTTCTTTCGCTTCAATGCAACATTCAGCTCCCGATCTTTTCGCTGAACTGTCGAAAAGGGCTTCAGAAATAATTCACACTTTCAAAGGGCAAGAACTTGCACAGCTTTTGTGGGCTTTCGCATCTCTATATGAGCCTGCTGACACTGTATTTGATTCTTTAGACAGACTCTTCGAAGATCATTGCCAATTGAAAGGTTTCGTAGGTGAAAAAACATCCAACAATAATGAACAAATCGGTGTTGTATCTGTTGATCGAAACGGGGACTCAACTTTACTTACTTTAAATAGGGATCAGCTTGGGACTATAGCTTGGTCCTATGCTGTCTTTGGACAAATGGACAGAAGTTTCTTCTCTTATGTATGGAAAACTCTCAGCCATTTTGAGGAGCAAAGGTTGTCTCTATGCGGTGAGCTTGAGGATAAAGTTTCCAGCGCTGGAAAAACGAAAAGGTTTAATCAGAAGATAACTTCGTCGTTTCAGAAAGAGGTTGGTCATCTTCTTGTTAGCACTGGACTTGAATGGGTCAAAGAATATGTTGTAGATGGGTACACTTTGGATGCTGTGATAGTCGATAAGAAGCTTGCTTTGGAGATCGATGGTCCTACACATTTCTCTAGAAATACTGGCGTTCCTTTAGGACATACCATGCTTAAACGTCGATACATTACGGCTGCCGGTTGGAAACTCGTATCGTTGTCCTATCAAGAGTGGGAGGAACTTCAAGGAGGGTCTGAACAGGTGGAGTACCTAAGGGACATTCTAAAAGATCATTTAGATAAAAAATATGATAACACTACATTGACAGAGGTAAAGTGA

Protein sequence

>MsG0680030514.01.T01

MSMLVGVAMTALPECSAQGISNIAWALSKVGGELLYFSEMDRIAEIALTKVGELNSQNIANIAGSFASMQHSAPDLFAELSKRASEIIHTFKGQELAQLLWAFASLYEPADTVFDSLDRLFEDHCQLKGFVGEKTSNNNEQIGVVSVDRNGDSTLLTLNRDQLGTIAWSYAVFGQMDRSFFSYVWKTLSHFEEQRLSLCGELEDKVSSAGKTKRFNQKITSSFQKEVGHLLVSTGLEWVKEYVVDGYTLDAVIVDKKLALEIDGPTHFSRNTGVPLGHTMLKRRYITAAGWKLVSLSYQEWEELQGGSEQVEYLRDILKDHLDKKYDNTTLTEVK*