AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005829.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005829.01.T01 MTR_1g107525 62.598 254 13 6 1 172 1 254 3.34e-92 269
MsG0180005829.01.T01 MTR_1g107525 78.788 132 4 2 1 108 1 132 6.74e-65 197
MsG0180005829.01.T01 MTR_1g107510 42.913 254 55 7 7 170 16 269 1.45e-47 156
MsG0180005829.01.T01 MTR_1g107510 49.624 133 35 3 7 107 16 148 2.01e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005829.01.T01 AT4G35220 50.213 235 33 7 20 170 37 271 3.26e-60 188
MsG0180005829.01.T01 AT1G44542 40.088 227 53 8 28 171 45 271 3.69e-38 132
MsG0180005829.01.T01 AT4G34180 55.856 111 24 2 23 108 24 134 5.63e-33 118
MsG0180005829.01.T01 AT4G34180 49.495 99 40 3 74 171 166 255 2.50e-18 80.1

Find 59 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCAAACATTGCCTTAT+TGG 0.080684 1:+96645064 None:intergenic
CACCATTGCGGCAATTTATT+TGG 0.156294 1:+96645178 None:intergenic
TTGCCGCAATGGTGTCTTTA+TGG 0.169887 1:-96645169 MsG0180005829.01.T01:three_prime_UTR
CTGGGACATCATCAAGTTTC+AGG 0.182140 1:+96645589 None:intergenic
CAGTCCATTGCTTACCTCTT+AGG 0.209663 1:-96645557 MsG0180005829.01.T01:CDS
TGCTTACCTCTTAGGTTGGC+TGG 0.313330 1:-96645549 MsG0180005829.01.T01:CDS
ATATTACACTTTAACTTTAG+TGG 0.330864 1:-96645131 MsG0180005829.01.T01:three_prime_UTR
TTCCATTGTCGTATACTTCC+CGG 0.343600 1:+96649818 None:intergenic
CGATGCATTCTAATCAAGTA+TGG 0.365696 1:-96645507 MsG0180005829.01.T01:CDS
AATAAACAAACACTCCAATA+AGG 0.369224 1:-96645078 MsG0180005829.01.T01:three_prime_UTR
CCAAGAGATTCTAATATAAC+TGG 0.371707 1:-96649436 MsG0180005829.01.T01:intron
CTCGACTTGCACGTCCTCAA+TGG 0.395006 1:-96649581 MsG0180005829.01.T01:intron
GTTTGCATTGCAATTTCCTA+TGG 0.401184 1:-96645051 MsG0180005829.01.T01:three_prime_UTR
TTCGATCATTACTTCGATGC+TGG 0.405597 1:-96649620 MsG0180005829.01.T01:CDS
CCATTGCTTACCTCTTAGGT+TGG 0.432052 1:-96645553 MsG0180005829.01.T01:CDS
CCAGTTATATTAGAATCTCT+TGG 0.437156 1:+96649436 None:intergenic
TTGATTAGAATGCATCGTAT+TGG 0.437438 1:+96645513 None:intergenic
ATGAAGCTTCCAACTCATAC+TGG 0.440868 1:-96649671 MsG0180005829.01.T01:CDS
GGCAATTTATTTGGTTCGAC+AGG 0.456557 1:+96645187 None:intergenic
AATCATAAGAAGCAACAGAT+AGG 0.460354 1:+96646629 None:intergenic
CTTAGGTTGGCTGGTGCTGA+GGG 0.467458 1:-96645540 MsG0180005829.01.T01:CDS
CTTCCCGGCGAGGAGGGATA+AGG 0.477141 1:+96649833 None:intergenic
GGTACTCATGTTGATGCTCC+TGG 0.490330 1:-96649650 MsG0180005829.01.T01:CDS
GCCGCCGTTCACCGCCGTTA+CGG 0.494137 1:+96649861 None:intergenic
TCTTAGGTTGGCTGGTGCTG+AGG 0.495320 1:-96645541 MsG0180005829.01.T01:CDS
CAATGGACTGATAATCCTGC+TGG 0.495405 1:+96645570 None:intergenic
TAACCTTATCCCTCCTCGCC+GGG 0.497045 1:-96649836 MsG0180005829.01.T01:CDS
GGTAGTAGCGTTAGCCTTGG+TGG 0.508800 1:-96649893 MsG0180005829.01.T01:CDS
TCAGCACCAGCCAACCTAAG+AGG 0.516231 1:+96645543 None:intergenic
CAGTGCTGTCTCAGAATCCA+TGG 0.521943 1:-96645304 MsG0180005829.01.T01:three_prime_UTR
GTATGTATGTTTAGAGCAAG+AGG 0.527028 1:-96645261 MsG0180005829.01.T01:three_prime_UTR
CATTTCAGAGTTATTAGCGA+TGG 0.534072 1:+96649691 None:intergenic
CTTGGAACATCACATAGAGC+AGG 0.537591 1:+96649454 None:intergenic
AACCAAATAAATTGCCGCAA+TGG 0.546249 1:-96645180 MsG0180005829.01.T01:three_prime_UTR
TAATGATCGAAGACATGTCC+AGG 0.547630 1:+96649632 None:intergenic
ATAACCTTATCCCTCCTCGC+CGG 0.552149 1:-96649837 MsG0180005829.01.T01:CDS
TGGAGTTTACAAAATTCCAT+AGG 0.554371 1:+96645035 None:intergenic
AAACTTGATGATGTCCCAGC+AGG 0.554591 1:-96645585 MsG0180005829.01.T01:CDS
CGTATACTTCCCGGCGAGGA+GGG 0.566543 1:+96649827 None:intergenic
AATGATGATCCACTCCTCCA+TGG 0.572204 1:+96645287 None:intergenic
TCGTATACTTCCCGGCGAGG+AGG 0.574729 1:+96649826 None:intergenic
ATCTCCGTAACGGCGGTGAA+CGG 0.576262 1:-96649865 MsG0180005829.01.T01:CDS
ACATGAGTACCAGTATGAGT+TGG 0.596387 1:+96649662 None:intergenic
TCCGTAACGGCGGTGAACGG+CGG 0.613340 1:-96649862 MsG0180005829.01.T01:CDS
AGCGGTAGTAGCGTTAGCCT+TGG 0.620390 1:-96649896 MsG0180005829.01.T01:CDS
GAAGATGAAACAAACCATTG+AGG 0.623787 1:+96649567 None:intergenic
TCTCAGAATCCATGGAGGAG+TGG 0.623829 1:-96645296 MsG0180005829.01.T01:three_prime_UTR
GAATCTTCGATATCACTCAC+AGG 0.624678 1:-96649795 MsG0180005829.01.T01:intron
AATGGACTGATAATCCTGCT+GGG 0.630507 1:+96645571 None:intergenic
TCGAAATATGAAGTATCAAG+CGG 0.632220 1:-96649914 None:intergenic
CGCCGGGAAGTATACGACAA+TGG 0.637447 1:-96649820 MsG0180005829.01.T01:CDS
CCAACCTAAGAGGTAAGCAA+TGG 0.639046 1:+96645553 None:intergenic
TTGGAACATCACATAGAGCA+GGG 0.643760 1:+96649455 None:intergenic
GGTGGTTACAATCTCCGTAA+CGG 0.645027 1:-96649875 MsG0180005829.01.T01:CDS
TTGTCGTATACTTCCCGGCG+AGG 0.682285 1:+96649823 None:intergenic
GGTTACAATCTCCGTAACGG+CGG 0.716921 1:-96649872 MsG0180005829.01.T01:CDS
TACGGAGATTGTAACCACCA+AGG 0.724247 1:+96649879 None:intergenic
GCTCCATAAAGACACCATTG+CGG 0.736681 1:+96645166 None:intergenic
TGCTGTCTCAGAATCCATGG+AGG 0.749848 1:-96645301 MsG0180005829.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTTAATTATGATTTAT+GGG - Chr1:96646977-96646996 MsG0180005829.01.T01:intron 10.0%
!! AATTGAAGATATTTATAACT+AGG + Chr1:96647673-96647692 None:intergenic 15.0%
!! ACAACATTAATAATTAATGT+GGG - Chr1:96645928-96645947 MsG0180005829.01.T01:intron 15.0%
!! ATAACATATTTAATCAATTC+TGG + Chr1:96646308-96646327 None:intergenic 15.0%
!! GAAACTTTAATTATGATTTA+TGG - Chr1:96646976-96646995 MsG0180005829.01.T01:intron 15.0%
!! TAAAATAAAAAAAATGCAAC+AGG + Chr1:96649510-96649529 None:intergenic 15.0%
!! TATTAGATGAAGATAATATT+TGG - Chr1:96647390-96647409 MsG0180005829.01.T01:intron 15.0%
!!! AAATTGATTTTGATGTATTT+AGG - Chr1:96648702-96648721 MsG0180005829.01.T01:intron 15.0%
!!! AATCAATTGTTATTTTGATT+TGG - Chr1:96646442-96646461 MsG0180005829.01.T01:intron 15.0%
!!! TACATTTTTGCTTATAATTT+AGG - Chr1:96646254-96646273 MsG0180005829.01.T01:intron 15.0%
!!! TTTCAATTCTTAACATTTTT+TGG - Chr1:96648253-96648272 MsG0180005829.01.T01:intron 15.0%
!!! TTTGGTTTAATTTCATATTT+AGG - Chr1:96645581-96645600 MsG0180005829.01.T01:CDS 15.0%
!! AAAAATGTACATAAATGCAT+TGG + Chr1:96646243-96646262 None:intergenic 20.0%
!! AAGAATTGAAAGAGAAAAAT+TGG + Chr1:96648244-96648263 None:intergenic 20.0%
!! AGAATTGAAAGAGAAAAATT+GGG + Chr1:96648243-96648262 None:intergenic 20.0%
!! CACAACATTAATAATTAATG+TGG - Chr1:96645927-96645946 MsG0180005829.01.T01:intron 20.0%
!! CTTATAGAAATAAGTTATGT+TGG + Chr1:96645666-96645685 None:intergenic 20.0%
!! GAATCCAATAAAAAATGAAA+TGG + Chr1:96648087-96648106 None:intergenic 20.0%
!! GAGTTATTCTAAATCTTATT+AGG - Chr1:96648046-96648065 MsG0180005829.01.T01:intron 20.0%
!! TATAAAAGACACTGAAATTT+GGG + Chr1:96646412-96646431 None:intergenic 20.0%
!! TATTGGATTCAAGATTATAA+TGG - Chr1:96648097-96648116 MsG0180005829.01.T01:intron 20.0%
!! TGAAAAGAATCAAATTCTTT+CGG + Chr1:96649591-96649610 None:intergenic 20.0%
!! TGAGAAAGTTTGATTAAAAT+AGG + Chr1:96646385-96646404 None:intergenic 20.0%
!!! AAAGATATTTTCGAATTTGT+TGG - Chr1:96649178-96649197 MsG0180005829.01.T01:intron 20.0%
!!! AATTCTTTGAAAGTTTTCTA+TGG + Chr1:96646360-96646379 None:intergenic 20.0%
!!! ATAGCTTCTGATAATTTTTT+TGG - Chr1:96645563-96645582 MsG0180005829.01.T01:CDS 20.0%
!!! ATATTACACTTTAACTTTAG+TGG - Chr1:96649825-96649844 MsG0180005829.01.T01:CDS 20.0%
!!! CAATTAGTTTTAAGTCAAAA+GGG + Chr1:96648461-96648480 None:intergenic 20.0%
!!! GTTTGACTTTATTTTATCTT+TGG - Chr1:96645733-96645752 MsG0180005829.01.T01:intron 20.0%
!!! TAGGCATAATTTTATTTTCT+TGG - Chr1:96647891-96647910 MsG0180005829.01.T01:intron 20.0%
!!! TATCTTTGGTAATAGAAATA+AGG - Chr1:96645747-96645766 MsG0180005829.01.T01:intron 20.0%
!!! TTCACCATTTCATTTTTTAT+TGG - Chr1:96648080-96648099 MsG0180005829.01.T01:intron 20.0%
!!! TTTAAATTTCTGGTCTTTAA+GGG - Chr1:96649526-96649545 MsG0180005829.01.T01:intron 20.0%
!!! TTTTAAATTTCTGGTCTTTA+AGG - Chr1:96649525-96649544 MsG0180005829.01.T01:intron 20.0%
! AATAAACAAACACTCCAATA+AGG - Chr1:96649878-96649897 MsG0180005829.01.T01:CDS 25.0%
! AATGTAGCATATTAAAGTTG+GGG - Chr1:96646937-96646956 MsG0180005829.01.T01:intron 25.0%
! AATGTTAAGTGGTTTATGTT+CGG + Chr1:96648850-96648869 None:intergenic 25.0%
! ACATAAACAATTACTCATTC+TGG - Chr1:96645773-96645792 MsG0180005829.01.T01:intron 25.0%
! ATATCACAAGTTAACTGAAT+TGG - Chr1:96646625-96646644 MsG0180005829.01.T01:CDS 25.0%
! ATCATATCCAATTGTCAAAT+TGG - Chr1:96648998-96649017 MsG0180005829.01.T01:intron 25.0%
! CAATGTAGCATATTAAAGTT+GGG - Chr1:96646936-96646955 MsG0180005829.01.T01:intron 25.0%
! GCATAAAATCTAAATCTTTG+TGG + Chr1:96647847-96647866 None:intergenic 25.0%
! GTATAAAAGACACTGAAATT+TGG + Chr1:96646413-96646432 None:intergenic 25.0%
! GTGTTTATCATATACTACTT+AGG + Chr1:96646280-96646299 None:intergenic 25.0%
! TAAATATGTTATACTGTACG+AGG - Chr1:96646316-96646335 MsG0180005829.01.T01:intron 25.0%
! TCAATTGAATGAGTTTGAAT+AGG - Chr1:96647872-96647891 MsG0180005829.01.T01:intron 25.0%
! TCCAAGTTGCAAATAAATAA+TGG + Chr1:96647987-96648006 None:intergenic 25.0%
! TCCATTATTTATTTGCAACT+TGG - Chr1:96647983-96648002 MsG0180005829.01.T01:intron 25.0%
! TCTAAATCTTATTAGGTAAC+TGG - Chr1:96648053-96648072 MsG0180005829.01.T01:intron 25.0%
! TGAGAAGATGATCATAATTA+GGG + Chr1:96645909-96645928 None:intergenic 25.0%
! TGTATTCATATTCTTTGTAC+TGG - Chr1:96646882-96646901 MsG0180005829.01.T01:intron 25.0%
! TTATTTATGTGATGTCATGT+AGG - Chr1:96648295-96648314 MsG0180005829.01.T01:intron 25.0%
! TTGAGTGTAAAAATCACATT+TGG + Chr1:96648793-96648812 None:intergenic 25.0%
!! ATAAATAATGGAATAGAGAG+AGG + Chr1:96647975-96647994 None:intergenic 25.0%
!! TTGTTTATGTGATATTTTGC+AGG - Chr1:96645478-96645497 MsG0180005829.01.T01:intron 25.0%
!!! GCAATTAGTTTTAAGTCAAA+AGG + Chr1:96648462-96648481 None:intergenic 25.0%
!!! TAATTTTCACTTTTCAGTGT+TGG - Chr1:96648562-96648581 MsG0180005829.01.T01:intron 25.0%
!!! TATTTAGGACATGTTTTGAT+TGG - Chr1:96645596-96645615 MsG0180005829.01.T01:CDS 25.0%
!!! TTTATTTTCTTGGTGAACAT+GGG - Chr1:96647901-96647920 MsG0180005829.01.T01:intron 25.0%
!!! TTTGATTTGGAAAAACTAGA+AGG - Chr1:96646455-96646474 MsG0180005829.01.T01:intron 25.0%
!!! TTTTATTTTCTTGGTGAACA+TGG - Chr1:96647900-96647919 MsG0180005829.01.T01:intron 25.0%
AAATGTCGGAAAAAATGTCA+CGG + Chr1:96647273-96647292 None:intergenic 30.0%
AAGAAAAATCCCAGGTTTAT+TGG + Chr1:96648527-96648546 None:intergenic 30.0%
AAGTCATTAAATATTCCCAG+AGG - Chr1:96646552-96646571 MsG0180005829.01.T01:intron 30.0%
AATCATAAGAAGCAACAGAT+AGG + Chr1:96648330-96648349 None:intergenic 30.0%
ACAAGCTTCAGTTTCTAATT+AGG + Chr1:96647106-96647125 None:intergenic 30.0%
ACACTTACCAATTTGACAAT+TGG + Chr1:96649008-96649027 None:intergenic 30.0%
ACCTACTTTCACACTTATTA+AGG - Chr1:96645816-96645835 MsG0180005829.01.T01:intron 30.0%
AGTAGTAGTATGGTCATAAA+AGG + Chr1:96648167-96648186 None:intergenic 30.0%
ATAATTAATGTGGGTGTTTC+TGG - Chr1:96645937-96645956 MsG0180005829.01.T01:intron 30.0%
CAAACAAAACATCAATGAAC+TGG + Chr1:96649085-96649104 None:intergenic 30.0%
CCAAGAGATTCTAATATAAC+TGG - Chr1:96645520-96645539 MsG0180005829.01.T01:CDS 30.0%
CCAGTTATATTAGAATCTCT+TGG + Chr1:96645523-96645542 None:intergenic 30.0%
GAGAAGATGATCATAATTAG+GGG + Chr1:96645908-96645927 None:intergenic 30.0%
GATTAACAAAGAAAAATCCC+AGG + Chr1:96648535-96648554 None:intergenic 30.0%
GCAATGTAGCATATTAAAGT+TGG - Chr1:96646935-96646954 MsG0180005829.01.T01:intron 30.0%
GTGAGAAGATGATCATAATT+AGG + Chr1:96645910-96645929 None:intergenic 30.0%
GTTGAGACAAAACACATAAT+TGG + Chr1:96646804-96646823 None:intergenic 30.0%
TAAGTCAAAGTTTAGGGAAA+CGG + Chr1:96647752-96647771 None:intergenic 30.0%
TAATTGCATCTCAATTCTCA+AGG - Chr1:96648475-96648494 MsG0180005829.01.T01:intron 30.0%
TACAAATGCAAAACTAGACA+CGG + Chr1:96647300-96647319 None:intergenic 30.0%
TACATTCAGATAACACATAC+AGG + Chr1:96646856-96646875 None:intergenic 30.0%
TCCTTAATAAGTGTGAAAGT+AGG + Chr1:96645820-96645839 None:intergenic 30.0%
TTAAAGTTCCATACACAACT+GGG - Chr1:96648603-96648622 MsG0180005829.01.T01:intron 30.0%
TTAATGACTTCATAACTCAG+CGG + Chr1:96646542-96646561 None:intergenic 30.0%
TTAGTTGCACTTATGAATAG+TGG - Chr1:96647486-96647505 MsG0180005829.01.T01:intron 30.0%
TTCACACTTATTAAGGATGA+CGG - Chr1:96645823-96645842 MsG0180005829.01.T01:intron 30.0%
TTGATTAGAATGCATCGTAT+TGG + Chr1:96649446-96649465 None:intergenic 30.0%
TTGTAACCATGAACATCATA+GGG - Chr1:96648653-96648672 MsG0180005829.01.T01:intron 30.0%
TTGTTCCTTTGGATAATTGA+AGG - Chr1:96649242-96649261 MsG0180005829.01.T01:intron 30.0%
TTTAAAAACACAAGGTGAGA+TGG + Chr1:96648361-96648380 None:intergenic 30.0%
TTTACAAGAGATTCCTATAG+CGG + Chr1:96647541-96647560 None:intergenic 30.0%
TTTGTAACCATGAACATCAT+AGG - Chr1:96648652-96648671 MsG0180005829.01.T01:intron 30.0%
! AAAGTGAGTTGAATGTTAAG+TGG + Chr1:96648861-96648880 None:intergenic 30.0%
! AGAGAACATCTAAAACACAA+CGG + Chr1:96647576-96647595 None:intergenic 30.0%
! ATGTTCTCTCTGATTTTTGT+TGG - Chr1:96647587-96647606 MsG0180005829.01.T01:intron 30.0%
! TCGCTTTATACATTGTTTTC+TGG - Chr1:96647327-96647346 MsG0180005829.01.T01:intron 30.0%
! TTTAAAGTTCCATACACAAC+TGG - Chr1:96648602-96648621 MsG0180005829.01.T01:intron 30.0%
! TTTGAGACTAAAGATGGTAT+CGG - Chr1:96645205-96645224 MsG0180005829.01.T01:three_prime_UTR 30.0%
!! ACCTTGTGTTTTTAAAAGAC+AGG - Chr1:96648365-96648384 MsG0180005829.01.T01:intron 30.0%
!! CAAAACACATAATTGGTCTT+TGG + Chr1:96646797-96646816 None:intergenic 30.0%
!! CCTTGTGTTTTTAAAAGACA+GGG - Chr1:96648366-96648385 MsG0180005829.01.T01:intron 30.0%
!!! AGTTTTAAGTCAAAAGGGTA+GGG + Chr1:96648456-96648475 None:intergenic 30.0%
!!! ATTTTTTGGCTCAATTTTGC+TGG - Chr1:96648267-96648286 MsG0180005829.01.T01:intron 30.0%
!!! TAGTTTTAAGTCAAAAGGGT+AGG + Chr1:96648457-96648476 None:intergenic 30.0%
AACCAAATAAATTGCCGCAA+TGG - Chr1:96649776-96649795 MsG0180005829.01.T01:intron 35.0%
AACTGAATTGGCACTGTTAT+AGG - Chr1:96646637-96646656 MsG0180005829.01.T01:CDS 35.0%
AATGTCGGAAAAAATGTCAC+GGG + Chr1:96647272-96647291 None:intergenic 35.0%
ACAAAACAGTTGGAAATCTG+GGG + Chr1:96646174-96646193 None:intergenic 35.0%
ACTAACTACTCCAATACTTC+AGG - Chr1:96649325-96649344 MsG0180005829.01.T01:intron 35.0%
ACTGAATTGGCACTGTTATA+GGG - Chr1:96646638-96646657 MsG0180005829.01.T01:CDS 35.0%
AGAATGCTTTCCTGAAGTAT+TGG + Chr1:96649338-96649357 None:intergenic 35.0%
AGTACATCACAGTAGTAGTA+TGG + Chr1:96648177-96648196 None:intergenic 35.0%
ATATGTTATACTGTACGAGG+AGG - Chr1:96646319-96646338 MsG0180005829.01.T01:intron 35.0%
ATATTGTGCACATTACCTGT+CGG + Chr1:96646609-96646628 None:intergenic 35.0%
ATCAGCAGAGTAGTTTGAAT+TGG + Chr1:96646708-96646727 None:intergenic 35.0%
ATGTTACTCTCCAATAAACC+TGG - Chr1:96648514-96648533 MsG0180005829.01.T01:intron 35.0%
ATTTGGAAAAACTAGAAGGC+TGG - Chr1:96646459-96646478 MsG0180005829.01.T01:intron 35.0%
CAATGCAAACATTGCCTTAT+TGG + Chr1:96649895-96649914 None:intergenic 35.0%
CACAAAACAGTTGGAAATCT+GGG + Chr1:96646175-96646194 None:intergenic 35.0%
CATTTCAGAGTTATTAGCGA+TGG + Chr1:96645268-96645287 None:intergenic 35.0%
CGATGCATTCTAATCAAGTA+TGG - Chr1:96649449-96649468 MsG0180005829.01.T01:CDS 35.0%
CTAAAACACAACGGCATATT+CGG + Chr1:96647567-96647586 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + Chr1:96646150-96646169 None:intergenic 35.0%
CTCAATTCTCAAGGTCTTTA+GGG - Chr1:96648484-96648503 MsG0180005829.01.T01:intron 35.0%
CTGAGTTAGAATCAACTCTT+AGG + Chr1:96648752-96648771 None:intergenic 35.0%
CTTGATAAGAGTTTGCAAAG+AGG - Chr1:96646103-96646122 MsG0180005829.01.T01:intron 35.0%
GAAGATGAAACAAACCATTG+AGG + Chr1:96645392-96645411 None:intergenic 35.0%
GATCTTATCGAGCATATAAG+TGG + Chr1:96647037-96647056 None:intergenic 35.0%
GCTACTTATCGTGAACAATA+TGG + Chr1:96646917-96646936 None:intergenic 35.0%
GTCATAAAAGGAGAAGATCA+AGG + Chr1:96648155-96648174 None:intergenic 35.0%
GTTTAGTGTCACAAAACAGT+TGG + Chr1:96646184-96646203 None:intergenic 35.0%
GTTTGCATTGCAATTTCCTA+TGG - Chr1:96649905-96649924 MsG0180005829.01.T01:CDS 35.0%
TAAAACACAACGGCATATTC+GGG + Chr1:96647566-96647585 None:intergenic 35.0%
TAAATACTTGCGAGACTGTT+TGG - Chr1:96645631-96645650 MsG0180005829.01.T01:intron 35.0%
TAAATCTTTGTGGTCAGTAG+TGG + Chr1:96647837-96647856 None:intergenic 35.0%
TAATGACTTCATAACTCAGC+GGG + Chr1:96646541-96646560 None:intergenic 35.0%
TATACCACAGTACACATGAA+AGG + Chr1:96647719-96647738 None:intergenic 35.0%
TATAGGGAGAATCACAACTA+GGG - Chr1:96646654-96646673 MsG0180005829.01.T01:intron 35.0%
TATCAAGGTCTATTGAACAG+TGG + Chr1:96647012-96647031 None:intergenic 35.0%
TCACAAAACAGTTGGAAATC+TGG + Chr1:96646176-96646195 None:intergenic 35.0%
TCTCAATTCTCAAGGTCTTT+AGG - Chr1:96648483-96648502 MsG0180005829.01.T01:intron 35.0%
TGAAAATTCCGCCTTAATTG+TGG - Chr1:96645966-96645985 MsG0180005829.01.T01:intron 35.0%
TGTTACTCTCCAATAAACCT+GGG - Chr1:96648515-96648534 MsG0180005829.01.T01:intron 35.0%
TTATAGGGAGAATCACAACT+AGG - Chr1:96646653-96646672 MsG0180005829.01.T01:intron 35.0%
TTCGACCTTCAATTATCCAA+AGG + Chr1:96649250-96649269 None:intergenic 35.0%
! ACAGAATTTGAAATTGCTGC+AGG - Chr1:96649626-96649645 MsG0180005829.01.T01:CDS 35.0%
! ACTACATGTATGAAGCACTA+TGG + Chr1:96647362-96647381 None:intergenic 35.0%
! AGTGATGTCTTTTGTTCCTT+TGG - Chr1:96649231-96649250 MsG0180005829.01.T01:intron 35.0%
! ATTCTTTGTACTGGTGTCAA+TGG - Chr1:96646891-96646910 MsG0180005829.01.T01:intron 35.0%
! CTAAGAGTTGATTCTAACTC+AGG - Chr1:96648750-96648769 MsG0180005829.01.T01:intron 35.0%
! CTGATTTTTGTTGGACTCTT+TGG - Chr1:96647596-96647615 MsG0180005829.01.T01:intron 35.0%
! CTTCATTGTATTAGCTTGAG+CGG - Chr1:96646047-96646066 MsG0180005829.01.T01:intron 35.0%
! CTTCCAAAAAGCATGAAGAA+CGG - Chr1:96645240-96645259 MsG0180005829.01.T01:three_prime_UTR 35.0%
! GTATGTATGTTTAGAGCAAG+AGG - Chr1:96649695-96649714 MsG0180005829.01.T01:CDS 35.0%
! TATGGTTATGTGCGATTTTG+AGG - Chr1:96649467-96649486 MsG0180005829.01.T01:intron 35.0%
! TTCATTGTATTAGCTTGAGC+GGG - Chr1:96646048-96646067 MsG0180005829.01.T01:intron 35.0%
! TTCCCTAAACTTTGACTTAG+CGG - Chr1:96647753-96647772 MsG0180005829.01.T01:intron 35.0%
!! AAGCTTGTTGAACTATTAGG+CGG - Chr1:96647118-96647137 MsG0180005829.01.T01:intron 35.0%
!! AGCATATAAGTGGACTATCA+AGG + Chr1:96647027-96647046 None:intergenic 35.0%
!! AGTTCATGTCATGTTGATTC+TGG + Chr1:96649308-96649327 None:intergenic 35.0%
!! ATTGGTCTTTGGTAAATTCC+TGG + Chr1:96646786-96646805 None:intergenic 35.0%
!! CAGTGTTGGTATCATTTGTT+TGG - Chr1:96648576-96648595 MsG0180005829.01.T01:intron 35.0%
!! CCCTGTCTTTTAAAAACACA+AGG + Chr1:96648369-96648388 None:intergenic 35.0%
!! CTGAAGCTTGTTGAACTATT+AGG - Chr1:96647115-96647134 MsG0180005829.01.T01:intron 35.0%
ACATGAGTACCAGTATGAGT+TGG + Chr1:96645297-96645316 None:intergenic 40.0%
ACCTGACATTAAACTGTGGT+AGG - Chr1:96647213-96647232 MsG0180005829.01.T01:intron 40.0%
AGAACTTAAAGCAGGAACTG+TGG + Chr1:96649567-96649586 None:intergenic 40.0%
AGCCGCTAAGTCAAAGTTTA+GGG + Chr1:96647758-96647777 None:intergenic 40.0%
AGCTATCCCTATGATGTTCA+TGG + Chr1:96648662-96648681 None:intergenic 40.0%
AGTATCTACAACGTGTGTGT+TGG + Chr1:96648941-96648960 None:intergenic 40.0%
ATCTCAGTGCTTGGTTGATT+TGG - Chr1:96649116-96649135 MsG0180005829.01.T01:intron 40.0%
ATGAAGCTTCCAACTCATAC+TGG - Chr1:96645285-96645304 MsG0180005829.01.T01:three_prime_UTR 40.0%
ATGTCACTACTTGCACTTCA+TGG + Chr1:96646763-96646782 None:intergenic 40.0%
CACCATTGCGGCAATTTATT+TGG + Chr1:96649781-96649800 None:intergenic 40.0%
CCATCTTTAGTCTCAAAAGC+TGG + Chr1:96645202-96645221 None:intergenic 40.0%
CGCTCAAGCTAATACAATGA+AGG + Chr1:96646049-96646068 None:intergenic 40.0%
GAATCTTCGATATCACTCAC+AGG - Chr1:96645161-96645180 MsG0180005829.01.T01:three_prime_UTR 40.0%
GAGAACCTGACATTAAACTG+TGG - Chr1:96647209-96647228 MsG0180005829.01.T01:intron 40.0%
GATAAGAGTTTGCAAAGAGG+AGG - Chr1:96646106-96646125 MsG0180005829.01.T01:intron 40.0%
GTAATCAATAGCAGTCGTAG+CGG - Chr1:96647417-96647436 MsG0180005829.01.T01:intron 40.0%
GTAGCATATTAAAGTTGGGG+TGG - Chr1:96646940-96646959 MsG0180005829.01.T01:intron 40.0%
GTATCTACAACGTGTGTGTT+GGG + Chr1:96648940-96648959 None:intergenic 40.0%
TAATGATCGAAGACATGTCC+AGG + Chr1:96645327-96645346 None:intergenic 40.0%
TACCTGTCGGTATCAATGTT+CGG + Chr1:96646596-96646615 None:intergenic 40.0%
TTCCATTGTCGTATACTTCC+CGG + Chr1:96645141-96645160 None:intergenic 40.0%
TTCGATCATTACTTCGATGC+TGG - Chr1:96645336-96645355 MsG0180005829.01.T01:intron 40.0%
TTGGAACATCACATAGAGCA+GGG + Chr1:96645504-96645523 None:intergenic 40.0%
! AGAATTTGACTCGAGCTATG+TGG - Chr1:96647154-96647173 MsG0180005829.01.T01:intron 40.0%
! AGAGTCTTATCTAACCGATG+TGG + Chr1:96646085-96646104 None:intergenic 40.0%
! GAACCGTTCTTCATGCTTTT+TGG + Chr1:96645246-96645265 None:intergenic 40.0%
! GAATTTGACTCGAGCTATGT+GGG - Chr1:96647155-96647174 MsG0180005829.01.T01:intron 40.0%
! GAGTCTTATCTAACCGATGT+GGG + Chr1:96646084-96646103 None:intergenic 40.0%
! GGCAATTTATTTGGTTCGAC+AGG + Chr1:96649772-96649791 None:intergenic 40.0%
! GTAGATACTAGCTCTCTCTT+TGG - Chr1:96648952-96648971 MsG0180005829.01.T01:intron 40.0%
! TGTATGAAGCACTATGGAGT+CGG + Chr1:96647356-96647375 None:intergenic 40.0%
! TTAGCCTTTCATGTGTACTG+TGG - Chr1:96647712-96647731 MsG0180005829.01.T01:intron 40.0%
!! AATGGACTGATAATCCTGCT+GGG + Chr1:96649388-96649407 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - Chr1:96646148-96646167 MsG0180005829.01.T01:intron 40.0%
!! TTTGTGGTCAGTAGTGGATA+GGG + Chr1:96647831-96647850 None:intergenic 40.0%
!!! CCAGCTTTTGAGACTAAAGA+TGG - Chr1:96645199-96645218 MsG0180005829.01.T01:three_prime_UTR 40.0%
AACGTGTGTGTTGGGTTATG+CGG + Chr1:96648932-96648951 None:intergenic 45.0%
AAGTGCAAGTAGTGACATCC+AGG - Chr1:96646765-96646784 MsG0180005829.01.T01:intron 45.0%
AATGATGATCCACTCCTCCA+TGG + Chr1:96649672-96649691 None:intergenic 45.0%
ACTAGGGCACACCACAATTA+AGG + Chr1:96645980-96645999 None:intergenic 45.0%
AGTACACGCTTTACACCTCT+GGG + Chr1:96646570-96646589 None:intergenic 45.0%
CAAACCAGAGGCTGCAATTT+AGG + Chr1:96646005-96646024 None:intergenic 45.0%
CAGCCGCTAAGTCAAAGTTT+AGG + Chr1:96647759-96647778 None:intergenic 45.0%
CAGTCCATTGCTTACCTCTT+AGG - Chr1:96649399-96649418 MsG0180005829.01.T01:intron 45.0%
CCAACCTAAGAGGTAAGCAA+TGG + Chr1:96649406-96649425 None:intergenic 45.0%
CCATTGCTTACCTCTTAGGT+TGG - Chr1:96649403-96649422 MsG0180005829.01.T01:intron 45.0%
CTAGACACGGTCACAAATGT+CGG + Chr1:96647287-96647306 None:intergenic 45.0%
CTGGGACATCATCAAGTTTC+AGG + Chr1:96649370-96649389 None:intergenic 45.0%
CTTATGAATAGTGGCTGCTG+CGG - Chr1:96647495-96647514 MsG0180005829.01.T01:intron 45.0%
CTTGGAACATCACATAGAGC+AGG + Chr1:96645505-96645524 None:intergenic 45.0%
CTTTCGGCAGAACTTAAAGC+AGG + Chr1:96649575-96649594 None:intergenic 45.0%
GCACATCAAATCTCAGTGCT+TGG - Chr1:96649107-96649126 MsG0180005829.01.T01:intron 45.0%
GCCTACCACAGTTTAATGTC+AGG + Chr1:96647217-96647236 None:intergenic 45.0%
GCTCCATAAAGACACCATTG+CGG + Chr1:96649793-96649812 None:intergenic 45.0%
GGTGGTTACAATCTCCGTAA+CGG - Chr1:96645081-96645100 MsG0180005829.01.T01:three_prime_UTR 45.0%
TACGGAGATTGTAACCACCA+AGG + Chr1:96645080-96645099 None:intergenic 45.0%
TATGTGGGATTCACTGTGGA+TGG - Chr1:96647170-96647189 MsG0180005829.01.T01:intron 45.0%
TTCCGAACATTGATACCGAC+AGG - Chr1:96646591-96646610 MsG0180005829.01.T01:CDS 45.0%
TTGCCGCAATGGTGTCTTTA+TGG - Chr1:96649787-96649806 MsG0180005829.01.T01:intron 45.0%
! ATTGTATTAGCTTGAGCGGG+TGG - Chr1:96646051-96646070 MsG0180005829.01.T01:intron 45.0%
!! AAACTTGATGATGTCCCAGC+AGG - Chr1:96649371-96649390 MsG0180005829.01.T01:intron 45.0%
!! CAATGGACTGATAATCCTGC+TGG + Chr1:96649389-96649408 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + Chr1:96646141-96646160 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - Chr1:96646138-96646157 MsG0180005829.01.T01:intron 45.0%
!! CTTTGTGGTCAGTAGTGGAT+AGG + Chr1:96647832-96647851 None:intergenic 45.0%
!! GATGGTATCGGTCATTCTTG+TGG - Chr1:96645217-96645236 MsG0180005829.01.T01:three_prime_UTR 45.0%
!!! TTTTTTTTATTTTAAATTTC+TGG - Chr1:96649516-96649535 MsG0180005829.01.T01:intron 5.0%
AGGCTGCAATTTAGGCGACT+AGG + Chr1:96645997-96646016 None:intergenic 50.0%
AGGGCACACCACAATTAAGG+CGG + Chr1:96645977-96645996 None:intergenic 50.0%
ATAACCTTATCCCTCCTCGC+CGG - Chr1:96645119-96645138 MsG0180005829.01.T01:three_prime_UTR 50.0%
CAGTGCTGTCTCAGAATCCA+TGG - Chr1:96649652-96649671 MsG0180005829.01.T01:CDS 50.0%
CCAAAGCTCCCAGTTGTGTA+TGG + Chr1:96648614-96648633 None:intergenic 50.0%
CCATACACAACTGGGAGCTT+TGG - Chr1:96648611-96648630 MsG0180005829.01.T01:intron 50.0%
CTGCAATGAAGGCAAACCAG+AGG + Chr1:96646017-96646036 None:intergenic 50.0%
GAGAAGATCAAGGTGCAGAG+TGG + Chr1:96648145-96648164 None:intergenic 50.0%
GAGCTATGTGGGATTCACTG+TGG - Chr1:96647166-96647185 MsG0180005829.01.T01:intron 50.0%
GAGTACACGCTTTACACCTC+TGG + Chr1:96646571-96646590 None:intergenic 50.0%
GGCTGCAATTTAGGCGACTA+GGG + Chr1:96645996-96646015 None:intergenic 50.0%
GGTACTCATGTTGATGCTCC+TGG - Chr1:96645306-96645325 MsG0180005829.01.T01:three_prime_UTR 50.0%
GGTGTTAGAGCCTGCAATGA+AGG + Chr1:96646028-96646047 None:intergenic 50.0%
GGTTACAATCTCCGTAACGG+CGG - Chr1:96645084-96645103 MsG0180005829.01.T01:three_prime_UTR 50.0%
GTCTCAAAAGCTGGCATGTC+TGG + Chr1:96645193-96645212 None:intergenic 50.0%
TCTCAGAATCCATGGAGGAG+TGG - Chr1:96649660-96649679 MsG0180005829.01.T01:CDS 50.0%
TGCTGTCTCAGAATCCATGG+AGG - Chr1:96649655-96649674 MsG0180005829.01.T01:CDS 50.0%
! CTCTGGTTTGCCTTCATTGC+AGG - Chr1:96646015-96646034 MsG0180005829.01.T01:intron 50.0%
! GCGCTTATGTGCCACTATAG+CGG + Chr1:96647451-96647470 None:intergenic 50.0%
! GGGTGGATTTAGTCCCACAT+CGG - Chr1:96646068-96646087 MsG0180005829.01.T01:intron 50.0%
! TGGCTGCTGCGGACTAATAA+CGG - Chr1:96647506-96647525 MsG0180005829.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + Chr1:96646136-96646155 None:intergenic 50.0%
!! TGCTTACCTCTTAGGTTGGC+TGG - Chr1:96649407-96649426 MsG0180005829.01.T01:intron 50.0%
ACGGCTGTAGTTGCCGCTAT+AGG - Chr1:96647525-96647544 MsG0180005829.01.T01:intron 55.0%
ATCTCCGTAACGGCGGTGAA+CGG - Chr1:96645091-96645110 MsG0180005829.01.T01:three_prime_UTR 55.0%
CCTGCTACGCTATAGCGCTT+TGG - Chr1:96647787-96647806 MsG0180005829.01.T01:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG - Chr1:96646128-96646147 MsG0180005829.01.T01:intron 55.0%
GCTACGCTATAGCGCTTTGG+CGG - Chr1:96647790-96647809 MsG0180005829.01.T01:intron 55.0%
GTCGCCTAAATTGCAGCCTC+TGG - Chr1:96645998-96646017 MsG0180005829.01.T01:intron 55.0%
TAACCTTATCCCTCCTCGCC+GGG - Chr1:96645120-96645139 MsG0180005829.01.T01:three_prime_UTR 55.0%
TCACTGTGGATGGCGCAAAG+TGG - Chr1:96647180-96647199 MsG0180005829.01.T01:intron 55.0%
TCAGCACCAGCCAACCTAAG+AGG + Chr1:96649416-96649435 None:intergenic 55.0%
TTGTCGTATACTTCCCGGCG+AGG + Chr1:96645136-96645155 None:intergenic 55.0%
! AGCGGTAGTAGCGTTAGCCT+TGG - Chr1:96645060-96645079 MsG0180005829.01.T01:three_prime_UTR 55.0%
! CCAAAGCGCTATAGCGTAGC+AGG + Chr1:96647790-96647809 None:intergenic 55.0%
! CGCCGGGAAGTATACGACAA+TGG - Chr1:96645136-96645155 MsG0180005829.01.T01:three_prime_UTR 55.0%
! CTCGACTTGCACGTCCTCAA+TGG - Chr1:96645375-96645394 MsG0180005829.01.T01:intron 55.0%
! TAGTGGATAGGGCTGTCTGG+CGG + Chr1:96647820-96647839 None:intergenic 55.0%
!! CAGTAGTGGATAGGGCTGTC+TGG + Chr1:96647823-96647842 None:intergenic 55.0%
!! CTTAGGTTGGCTGGTGCTGA+GGG - Chr1:96649416-96649435 MsG0180005829.01.T01:intron 55.0%
!! GGTAGTAGCGTTAGCCTTGG+TGG - Chr1:96645063-96645082 MsG0180005829.01.T01:three_prime_UTR 55.0%
!! TAGCAGTCGTAGCGGACTAG+CGG - Chr1:96647425-96647444 MsG0180005829.01.T01:intron 55.0%
!! TCTTAGGTTGGCTGGTGCTG+AGG - Chr1:96649415-96649434 MsG0180005829.01.T01:intron 55.0%
CGCTATAGCGCTTTGGCGGT+CGG - Chr1:96647794-96647813 MsG0180005829.01.T01:intron 60.0%
CGTATACTTCCCGGCGAGGA+GGG + Chr1:96645132-96645151 None:intergenic 60.0%
GGATGGCGCAAAGTGGCTAG+TGG - Chr1:96647187-96647206 MsG0180005829.01.T01:intron 60.0%
TCGTATACTTCCCGGCGAGG+AGG + Chr1:96645133-96645152 None:intergenic 60.0%
CTTCCCGGCGAGGAGGGATA+AGG + Chr1:96645126-96645145 None:intergenic 65.0%
TCCGTAACGGCGGTGAACGG+CGG - Chr1:96645094-96645113 MsG0180005829.01.T01:three_prime_UTR 65.0%
!! CGGACTAGCGGCCGCTATAG+TGG - Chr1:96647437-96647456 MsG0180005829.01.T01:intron 65.0%
GCCGCCGTTCACCGCCGTTA+CGG + Chr1:96645098-96645117 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96645049 96649929 96645049 ID=MsG0180005829.01;Name=MsG0180005829.01
Chr1 mRNA 96645049 96649929 96645049 ID=MsG0180005829.01.T01;Parent=MsG0180005829.01;Name=MsG0180005829.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.6|0.5|1|0.8|0.66|6|283|177
Chr1 exon 96645049 96645330 96645049 ID=MsG0180005829.01.T01:exon:19546;Parent=MsG0180005829.01.T01
Chr1 exon 96645490 96645631 96645490 ID=MsG0180005829.01.T01:exon:19545;Parent=MsG0180005829.01.T01
Chr1 exon 96646591 96646661 96646591 ID=MsG0180005829.01.T01:exon:19544;Parent=MsG0180005829.01.T01
Chr1 exon 96649437 96649478 96649437 ID=MsG0180005829.01.T01:exon:19543;Parent=MsG0180005829.01.T01
Chr1 exon 96649582 96649727 96649582 ID=MsG0180005829.01.T01:exon:19542;Parent=MsG0180005829.01.T01
Chr1 exon 96649796 96649929 96649796 ID=MsG0180005829.01.T01:exon:19541;Parent=MsG0180005829.01.T01
Chr1 CDS 96649796 96649929 96649796 ID=MsG0180005829.01.T01:cds;Parent=MsG0180005829.01.T01
Chr1 CDS 96649582 96649727 96649582 ID=MsG0180005829.01.T01:cds;Parent=MsG0180005829.01.T01
Chr1 CDS 96649437 96649478 96649437 ID=MsG0180005829.01.T01:cds;Parent=MsG0180005829.01.T01
Chr1 CDS 96646591 96646661 96646591 ID=MsG0180005829.01.T01:cds;Parent=MsG0180005829.01.T01
Chr1 CDS 96645491 96645631 96645491 ID=MsG0180005829.01.T01:cds;Parent=MsG0180005829.01.T01
Chr1 three_prime_UTR 96645490 96645490 96645490 ID=MsG0180005829.01.T01:three_prime_utr;Parent=MsG0180005829.01.T01
Chr1 three_prime_UTR 96645049 96645330 96645049 ID=MsG0180005829.01.T01:three_prime_utr;Parent=MsG0180005829.01.T01
Gene Sequence

>MsG0180005829.01.T01

ATGAAGTATCAAGCGGTAGTAGCGTTAGCCTTGGTGGTTACAATCTCCGTAACGGCGGTGAACGGCGGCGATAACCTTATCCCTCCTCGCCGGGAAGTATACGACAATGGAAGAATCTTCGATATCACTCACAGCATGAAGAACGGTTCCATCGCTAATAACTCTGAAATGAAGCTTCCAACTCATACTGGTACTCATGTTGATGCTCCTGGACATGTCTTCGATCATTACTTCGATGCTGGATTCGATGTCGATTCTCTCGACTTGCACGTCCTCAATGGCCCTGCTCTATGTGATGTTCCAAGAGATTCTAATATAACTGGTATTGATTACCTATCTGTTGCTTCTTATGATTACTTGATTCCATCTCACCTTGTGTTTTTAAAAGACAGGGAAAGCATTCTCGTCGAAAGCCTGAAACTTGATGATGTCCCAGCAGGATTATCAGTCCATTGCTTACCTCTTAGGTTGGCTGGTGCTGAGGGATCACCAATACGATGCATTCTAATCAAGTATGGTTATGTGCGATTTTGA

Protein sequence

>MsG0180005829.01.T01

MKYQAVVALALVVTISVTAVNGGDNLIPPRREVYDNGRIFDITHSMKNGSIANNSEMKLPTHTGTHVDAPGHVFDHYFDAGFDVDSLDLHVLNGPALCDVPRDSNITGIDYLSVASYDYLIPSHLVFLKDRESILVESLKLDDVPAGLSVHCLPLRLAGAEGSPIRCILIKYGYVRF*