AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018037.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018037.01.T01 MTR_3g117600 92.275 233 13 4 1 232 1 229 2.09e-137 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018037.01.T01 AT4G34730 59.649 228 75 3 6 232 4 215 2.28e-86 255
MsG0380018037.01.T01 AT4G34730 59.649 228 75 3 6 232 4 215 2.28e-86 255
MsG0380018037.01.T01 AT4G34730 59.649 228 75 3 6 232 4 215 2.28e-86 255

Find 83 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCACTGCGAACATATT+TGG 0.174334 3:+103583527 None:intergenic
TGAAATCACCGCTGATTTAC+AGG 0.294810 3:-103583890 MsG0380018037.01.T01:intron
TTAGTATCAAGCTTTCTATT+TGG 0.298356 3:-103582231 MsG0380018037.01.T01:three_prime_UTR
CATTGTGGTATCTTTGAATC+TGG 0.310356 3:-103581713 MsG0380018037.01.T01:three_prime_UTR
AAATGGTTGCCAAACAAATT+AGG 0.339007 3:-103584026 MsG0380018037.01.T01:CDS
AAATATGTTCGCAGTGAGTT+GGG 0.366464 3:-103583525 MsG0380018037.01.T01:CDS
GGCAAATTGCAAGACGTTAT+CGG 0.368809 3:+103583978 None:intergenic
GGGAAGGAAGTGGCCATGGC+TGG 0.375787 3:-103583564 MsG0380018037.01.T01:CDS
TCTAAACATGAAGCTTTGAT+AGG 0.381867 3:-103582029 MsG0380018037.01.T01:three_prime_UTR
CATATAGACAAAACTAAACT+TGG 0.382867 3:+103582259 None:intergenic
GTTCTTCCTGAAGCTTCCTT+AGG 0.384742 3:-103583955 MsG0380018037.01.T01:CDS
CATGGACCCACTCACGCCTC+TGG 0.394773 3:+103584097 None:intergenic
AAGTTCTCTCCTAATTTGTT+TGG 0.408418 3:+103584017 None:intergenic
GAAAGGAAGAATACTGGAAT+AGG 0.409467 3:-103584273 MsG0380018037.01.T01:five_prime_UTR
AAGAATACTGGAATAGGAAT+AGG 0.411749 3:-103584267 MsG0380018037.01.T01:five_prime_UTR
TCAGCACCTAAGGAAGCTTC+AGG 0.415676 3:+103583949 None:intergenic
ACATAAATGATACCTTCTTC+AGG 0.417511 3:+103582400 None:intergenic
GAATCCAAGGAGAGTCAAAA+TGG 0.420166 3:-103584043 MsG0380018037.01.T01:CDS
CAGATGAAGACGATGCTGAT+TGG 0.423415 3:-103582435 MsG0380018037.01.T01:CDS
AAGGGAGAAAGGAAGAATAC+TGG 0.430552 3:-103584279 None:intergenic
AGATGAAGACGATGCTGATT+GGG 0.431019 3:-103582434 MsG0380018037.01.T01:CDS
CATGAAGCTTTGATAGGTAT+AGG 0.434848 3:-103582023 MsG0380018037.01.T01:three_prime_UTR
CAGGCAAATTACTGATGCTT+GGG 0.452885 3:+103582364 None:intergenic
GAGGTAAGAATCAGCACCTA+AGG 0.457882 3:+103583939 None:intergenic
CGGTCACACTCACACCTTGT+TGG 0.460357 3:-103584170 MsG0380018037.01.T01:CDS
ATAGGAATAGGAATAGGAAT+AGG 0.470738 3:-103584255 MsG0380018037.01.T01:five_prime_UTR
ACTGGAATAGGAATAGGAAT+AGG 0.472678 3:-103584261 MsG0380018037.01.T01:five_prime_UTR
TCCTCATTATTCTTGAAGCA+TGG 0.477997 3:+103584079 None:intergenic
CAAATATGTTCGCAGTGAGT+TGG 0.480055 3:-103583526 MsG0380018037.01.T01:CDS
AATAATGAGGATAAAATGTA+TGG 0.481499 3:-103584067 MsG0380018037.01.T01:CDS
TTGCCTGTTTGTTATGAAGA+TGG 0.482135 3:-103582348 MsG0380018037.01.T01:three_prime_UTR
AAATGTTGCATTAAACAACT+TGG 0.483518 3:-103581557 MsG0380018037.01.T01:three_prime_UTR
TCTCCATCTTCATAACAAAC+AGG 0.488639 3:+103582345 None:intergenic
TGTCTCCTATACTCTCATCT+TGG 0.488725 3:+103581936 None:intergenic
ACAGGCAAATTACTGATGCT+TGG 0.493202 3:+103582363 None:intergenic
TATAGGACTTTATCTAACTA+AGG 0.493426 3:-103582006 MsG0380018037.01.T01:three_prime_UTR
AGAAAGGTGACAAAAGGTTA+AGG 0.493643 3:+103581736 None:intergenic
CAAAGATACCACAATGAGAA+AGG 0.494354 3:+103581720 None:intergenic
CTAAACTTGGGATTATCTAA+AGG 0.494857 3:+103582272 None:intergenic
ACAATGAGAAAGGTGACAAA+AGG 0.509247 3:+103581730 None:intergenic
CATAAATGATACCTTCTTCA+GGG 0.510113 3:+103582401 None:intergenic
TATCTCCAAGATGAGAGTAT+AGG 0.515942 3:-103581941 MsG0380018037.01.T01:three_prime_UTR
TGAAGAAGGTATCATTTATG+TGG 0.517227 3:-103582398 MsG0380018037.01.T01:CDS
GGTGATTTCAACGTCGGTGA+TGG 0.525546 3:+103583903 None:intergenic
GGAAGGAAGTGGCCATGGCT+GGG 0.525786 3:-103583563 MsG0380018037.01.T01:CDS
TATAGTTGCAGTTGCAGTTG+CGG 0.536941 3:+103584128 None:intergenic
ATGGACCCACTCACGCCTCT+GGG 0.541708 3:+103584098 None:intergenic
ATGTGGAGTTAGTTTCAACT+TGG 0.547754 3:-103581480 MsG0380018037.01.T01:three_prime_UTR
GTGATAGCTTATATGACTGT+AGG 0.560853 3:+103581632 None:intergenic
TTCAGACCCAGAGGCGTGAG+TGG 0.561624 3:-103584104 MsG0380018037.01.T01:CDS
ATATAGACAAAACTAAACTT+GGG 0.562453 3:+103582260 None:intergenic
ATGGAGTTCGATTCATTGAG+TGG 0.565567 3:-103581783 MsG0380018037.01.T01:three_prime_UTR
AGATGAAAGAGGGAAGGAAG+TGG 0.566160 3:-103583574 MsG0380018037.01.T01:CDS
ATGGAGAGACCATGCAGTGT+TGG 0.575366 3:-103582329 MsG0380018037.01.T01:three_prime_UTR
TAAAATGTATGGCGAATCCA+AGG 0.579676 3:-103584056 MsG0380018037.01.T01:CDS
GAAGATGAAGACCCTGAAGA+AGG 0.579729 3:-103582412 MsG0380018037.01.T01:CDS
ATGATGCACTCATCTCAACT+TGG 0.582549 3:-103581832 MsG0380018037.01.T01:three_prime_UTR
AAGAGGGAAGGAAGTGGCCA+TGG 0.582663 3:-103583568 MsG0380018037.01.T01:CDS
AACGTCGGTGATGGTGGTGA+CGG 0.583949 3:+103583912 None:intergenic
CGGTTATTACATCGCCAACA+AGG 0.589245 3:+103584156 None:intergenic
TGGGGAGGCGTATGAAGTTG+CGG 0.591668 3:-103583506 MsG0380018037.01.T01:CDS
AATATGTTCGCAGTGAGTTG+GGG 0.594957 3:-103583524 MsG0380018037.01.T01:CDS
CATATAAGCTATCACAGTAG+AGG 0.595358 3:-103581624 MsG0380018037.01.T01:three_prime_UTR
TAAGGAAGCTTCAGGAAGAA+CGG 0.601825 3:+103583957 None:intergenic
ATGTTCGCAGTGAGTTGGGG+AGG 0.601873 3:-103583521 MsG0380018037.01.T01:CDS
GATTTCAACGTCGGTGATGG+TGG 0.617438 3:+103583906 None:intergenic
CAGTTGCAGTTGCGGTTGTG+CGG 0.618176 3:+103584136 None:intergenic
AGAGACCATGCAGTGTTGGT+AGG 0.621060 3:-103582325 MsG0380018037.01.T01:three_prime_UTR
ACATACCTACCAACACTGCA+TGG 0.622994 3:+103582320 None:intergenic
TGATGGTGGTGACGGAAGAG+AGG 0.626472 3:+103583920 None:intergenic
TCAGACCCAGAGGCGTGAGT+GGG 0.627258 3:-103584103 MsG0380018037.01.T01:CDS
GACGCAATTGCTTCACACCG+CGG 0.639535 3:-103584208 MsG0380018037.01.T01:CDS
CGATGGTATCAGTGCAGCCG+CGG 0.642361 3:+103584191 None:intergenic
CAGTTGGATTCATCAGTGAA+CGG 0.643319 3:-103582487 MsG0380018037.01.T01:CDS
CGCGGCTGCACTGATACCAT+CGG 0.650425 3:-103584190 MsG0380018037.01.T01:CDS
GACAAAAGGTTAAGGTACGA+AGG 0.653649 3:+103581744 None:intergenic
ATCAGCGGTGATTTCAACGT+CGG 0.653697 3:+103583897 None:intergenic
ATATGACTGTAGGTAAACGA+AGG 0.674058 3:+103581642 None:intergenic
TCCATGCTTCAAGAATAATG+AGG 0.684220 3:-103584080 MsG0380018037.01.T01:CDS
AATAAGAACCTGTAAATCAG+CGG 0.693763 3:+103583882 None:intergenic
GTATCTTTGAATCTGGTATG+CGG 0.714818 3:-103581706 MsG0380018037.01.T01:three_prime_UTR
CAAGGTGTGAGTGTGACCGA+TGG 0.717093 3:+103584174 None:intergenic
CAACTATATTTCAGACCCAG+AGG 0.724001 3:-103584113 MsG0380018037.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAGAAAAAAATATA+AGG + Chr3:103582389-103582408 None:intergenic 10.0%
!! AAAAATATATGAAAAGTTTC+AGG - Chr3:103584207-103584226 MsG0380018037.01.T01:CDS 15.0%
!! ATCATGAAACAAAATTAATA+AGG + Chr3:103581927-103581946 None:intergenic 15.0%
!! ATTAAATGAGAAAAATGAAA+AGG + Chr3:103581883-103581902 None:intergenic 15.0%
!! TGCTTAAATATATAAAAGAA+TGG + Chr3:103582956-103582975 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG - Chr3:103582819-103582838 MsG0380018037.01.T01:intron 15.0%
!!! TAGTTTTAATATTAGAAATG+TGG - Chr3:103584107-103584126 MsG0380018037.01.T01:CDS 15.0%
!! AAGATAAAAAAAGATTTCAG+CGG + Chr3:103582792-103582811 None:intergenic 20.0%
!! AATAATGAGGATAAAATGTA+TGG - Chr3:103581537-103581556 MsG0380018037.01.T01:three_prime_UTR 20.0%
!! ATATAGACAAAACTAAACTT+GGG + Chr3:103583347-103583366 None:intergenic 20.0%
!! GAATTATCACACTATAAATT+CGG + Chr3:103581775-103581794 None:intergenic 20.0%
!! TCATCAGGAAAATAAAAATA+AGG + Chr3:103582699-103582718 None:intergenic 20.0%
!!! ATACACAGTATAATTCTTTT+TGG + Chr3:103583407-103583426 None:intergenic 20.0%
!!! ATATTTACCGTTTCTTTTTA+CGG - Chr3:103582187-103582206 MsG0380018037.01.T01:three_prime_UTR 20.0%
!!! TTTAGTTTTGTCTATATGAA+TGG - Chr3:103583350-103583369 MsG0380018037.01.T01:intron 20.0%
! AAATGTTGCATTAAACAACT+TGG - Chr3:103584047-103584066 MsG0380018037.01.T01:CDS 25.0%
! AGTGATACATAAGAATAAGA+TGG - Chr3:103582577-103582596 MsG0380018037.01.T01:intron 25.0%
! CATATAGACAAAACTAAACT+TGG + Chr3:103583348-103583367 None:intergenic 25.0%
! CTCATTTAATCTAGTGTATT+TGG - Chr3:103581893-103581912 MsG0380018037.01.T01:three_prime_UTR 25.0%
! TATAGGACTTTATCTAACTA+AGG - Chr3:103583598-103583617 MsG0380018037.01.T01:CDS 25.0%
! TATATATTTAAGCAGCTTCT+TGG - Chr3:103582962-103582981 MsG0380018037.01.T01:intron 25.0%
! TCTATCTACCATATATATGT+TGG - Chr3:103582437-103582456 MsG0380018037.01.T01:CDS 25.0%
! TTAGTATCAAGCTTTCTATT+TGG - Chr3:103583373-103583392 MsG0380018037.01.T01:intron 25.0%
! TTTATAGTGTGATAATTCAG+TGG - Chr3:103581777-103581796 MsG0380018037.01.T01:three_prime_UTR 25.0%
!! ACATCTTTTCATATACACAT+TGG + Chr3:103583523-103583542 None:intergenic 25.0%
!! TAACTAAGGTAGACAATTTT+AGG - Chr3:103583636-103583655 MsG0380018037.01.T01:intron 25.0%
!! TATTCAAACAATGCTTTTGA+GGG - Chr3:103582643-103582662 MsG0380018037.01.T01:intron 25.0%
!!! ATGTTGCTTCTTCTTTTATA+TGG - Chr3:103583802-103583821 MsG0380018037.01.T01:intron 25.0%
AAATGGTTGCCAAACAAATT+AGG - Chr3:103581578-103581597 MsG0380018037.01.T01:three_prime_UTR 30.0%
AAGAACCATCTCATAATTGT+GGG + Chr3:103582508-103582527 None:intergenic 30.0%
AAGAATACTGGAATAGGAAT+AGG - Chr3:103581337-103581356 MsG0380018037.01.T01:three_prime_UTR 30.0%
AATAAGAACCTGTAAATCAG+CGG + Chr3:103581725-103581744 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG + Chr3:103583207-103583226 None:intergenic 30.0%
AGAAAAATGAAAAGGCAATG+TGG + Chr3:103581875-103581894 None:intergenic 30.0%
ATAGGAATAGGAATAGGAAT+AGG - Chr3:103581349-103581368 MsG0380018037.01.T01:three_prime_UTR 30.0%
ATTATGAGATGGTTCTTACT+AGG - Chr3:103582511-103582530 MsG0380018037.01.T01:CDS 30.0%
CATAAATGATACCTTCTTCA+GGG + Chr3:103583206-103583225 None:intergenic 30.0%
CTAAACTTGGGATTATCTAA+AGG + Chr3:103583335-103583354 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG + Chr3:103582509-103582528 None:intergenic 30.0%
TATCTAATATTGCAATGACC+TGG + Chr3:103583056-103583075 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG + Chr3:103581772-103581791 None:intergenic 30.0%
! AAGTTTGTGTTGTTCTGTTT+CGG - Chr3:103582232-103582251 MsG0380018037.01.T01:three_prime_UTR 30.0%
! ATTCAAACAATGCTTTTGAG+GGG - Chr3:103582644-103582663 MsG0380018037.01.T01:intron 30.0%
! ATTTCAGACTTTTACTTCAG+TGG - Chr3:103584158-103584177 MsG0380018037.01.T01:CDS 30.0%
! CTATTCAAACAATGCTTTTG+AGG - Chr3:103582642-103582661 MsG0380018037.01.T01:intron 30.0%
! GTTGTGAGCTTTTATTGATA+TGG - Chr3:103583009-103583028 MsG0380018037.01.T01:intron 30.0%
! GTTTAATGCAACATTTTTGC+AGG + Chr3:103584043-103584062 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG - Chr3:103581979-103581998 MsG0380018037.01.T01:three_prime_UTR 30.0%
! TCTAAACATGAAGCTTTGAT+AGG - Chr3:103583575-103583594 MsG0380018037.01.T01:CDS 30.0%
! TTTCCTGATGATGAAATTGT+GGG - Chr3:103582708-103582727 MsG0380018037.01.T01:intron 30.0%
!! AAGTTCTCTCCTAATTTGTT+TGG + Chr3:103581590-103581609 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG - Chr3:103583206-103583225 MsG0380018037.01.T01:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG - Chr3:103582707-103582726 MsG0380018037.01.T01:intron 30.0%
!!! TTTTAAGTTGCTCAAAACTC+AGG - Chr3:103583928-103583947 MsG0380018037.01.T01:CDS 30.0%
AAACCCACAATTTCATCATC+AGG + Chr3:103582714-103582733 None:intergenic 35.0%
AAATATGTTCGCAGTGAGTT+GGG - Chr3:103582079-103582098 MsG0380018037.01.T01:three_prime_UTR 35.0%
AATGACCTGGAAGTTTGAAT+GGG + Chr3:103583043-103583062 None:intergenic 35.0%
ACAATGAGAAAGGTGACAAA+AGG + Chr3:103583877-103583896 None:intergenic 35.0%
ACATGAGTGAAAATTTGTGC+TGG + Chr3:103582302-103582321 None:intergenic 35.0%
ACTGGAATAGGAATAGGAAT+AGG - Chr3:103581343-103581362 MsG0380018037.01.T01:three_prime_UTR 35.0%
AGAAAGGTGACAAAAGGTTA+AGG + Chr3:103583871-103583890 None:intergenic 35.0%
AGAACCACCGTAAAAAGAAA+CGG + Chr3:103582197-103582216 None:intergenic 35.0%
AGAACCATCTCATAATTGTG+GGG + Chr3:103582507-103582526 None:intergenic 35.0%
ATATGACTGTAGGTAAACGA+AGG + Chr3:103583965-103583984 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG + Chr3:103582537-103582556 None:intergenic 35.0%
CAAAGATACCACAATGAGAA+AGG + Chr3:103583887-103583906 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG + Chr3:103582620-103582639 None:intergenic 35.0%
CATATAAGCTATCACAGTAG+AGG - Chr3:103583980-103583999 MsG0380018037.01.T01:CDS 35.0%
CATGAGTGAAAATTTGTGCT+GGG + Chr3:103582301-103582320 None:intergenic 35.0%
CATTGTGGTATCTTTGAATC+TGG - Chr3:103583891-103583910 MsG0380018037.01.T01:CDS 35.0%
CTAGCAATGCGTTATATCAA+TGG - Chr3:103581838-103581857 MsG0380018037.01.T01:three_prime_UTR 35.0%
GAGTGAAACAAGCAAAAACA+TGG - Chr3:103583092-103583111 MsG0380018037.01.T01:intron 35.0%
GTATCTTTGAATCTGGTATG+CGG - Chr3:103583898-103583917 MsG0380018037.01.T01:CDS 35.0%
GTGATAGCTTATATGACTGT+AGG + Chr3:103583975-103583994 None:intergenic 35.0%
TAAAATGTATGGCGAATCCA+AGG - Chr3:103581548-103581567 MsG0380018037.01.T01:three_prime_UTR 35.0%
TCCATGCTTCAAGAATAATG+AGG - Chr3:103581524-103581543 MsG0380018037.01.T01:three_prime_UTR 35.0%
TCCTCATTATTCTTGAAGCA+TGG + Chr3:103581528-103581547 None:intergenic 35.0%
TCTCCATCTTCATAACAAAC+AGG + Chr3:103583262-103583281 None:intergenic 35.0%
TCTCTTTGAATACGAACTGA+GGG + Chr3:103582351-103582370 None:intergenic 35.0%
TGGCAGTTCCAACATATATA+TGG + Chr3:103582448-103582467 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG - Chr3:103582407-103582426 MsG0380018037.01.T01:CDS 35.0%
TTCTCTTTGAATACGAACTG+AGG + Chr3:103582352-103582371 None:intergenic 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG - Chr3:103581988-103582007 MsG0380018037.01.T01:three_prime_UTR 35.0%
! AGGGTGTATGTATCTGTTTT+TGG - Chr3:103582007-103582026 MsG0380018037.01.T01:three_prime_UTR 35.0%
! ATGTGGAGTTAGTTTCAACT+TGG - Chr3:103584124-103584143 MsG0380018037.01.T01:CDS 35.0%
! CATGAAGCTTTGATAGGTAT+AGG - Chr3:103583581-103583600 MsG0380018037.01.T01:CDS 35.0%
! CGTCAGATTTTCTCTAACTA+AGG - Chr3:103583622-103583641 MsG0380018037.01.T01:intron 35.0%
! TATCTCCAAGATGAGAGTAT+AGG - Chr3:103583663-103583682 MsG0380018037.01.T01:intron 35.0%
! TTTACCGTTTCTTTTTACGG+TGG - Chr3:103582190-103582209 MsG0380018037.01.T01:three_prime_UTR 35.0%
! TTTTGTCACCTTTCTCATTG+TGG - Chr3:103583876-103583895 MsG0380018037.01.T01:intron 35.0%
!! TTGCCTGTTTGTTATGAAGA+TGG - Chr3:103583256-103583275 MsG0380018037.01.T01:intron 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG - Chr3:103582020-103582039 MsG0380018037.01.T01:three_prime_UTR 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG - Chr3:103582019-103582038 MsG0380018037.01.T01:three_prime_UTR 35.0%
AAGCAAAAACATGGAGCAGT+TGG - Chr3:103583101-103583120 MsG0380018037.01.T01:intron 40.0%
AATATGTTCGCAGTGAGTTG+GGG - Chr3:103582080-103582099 MsG0380018037.01.T01:three_prime_UTR 40.0%
ACAGGCAAATTACTGATGCT+TGG + Chr3:103583244-103583263 None:intergenic 40.0%
ACGGAATAAACTGTGACACA+TGG + Chr3:103582468-103582487 None:intergenic 40.0%
AGTGAAAATTTGTGCTGGGA+AGG + Chr3:103582297-103582316 None:intergenic 40.0%
ATGACTGTCATGTAATGCTG+TGG - Chr3:103581945-103581964 MsG0380018037.01.T01:three_prime_UTR 40.0%
ATGATGCACTCATCTCAACT+TGG - Chr3:103583772-103583791 MsG0380018037.01.T01:intron 40.0%
ATGGAGTTCGATTCATTGAG+TGG - Chr3:103583821-103583840 MsG0380018037.01.T01:intron 40.0%
CAAATATGTTCGCAGTGAGT+TGG - Chr3:103582078-103582097 MsG0380018037.01.T01:three_prime_UTR 40.0%
CAACTATATTTCAGACCCAG+AGG - Chr3:103581491-103581510 MsG0380018037.01.T01:three_prime_UTR 40.0%
CAACTCACTGCGAACATATT+TGG + Chr3:103582080-103582099 None:intergenic 40.0%
CAATGACCTGGAAGTTTGAA+TGG + Chr3:103583044-103583063 None:intergenic 40.0%
CACTCATGTTCTTTCTGTGT+TGG - Chr3:103582313-103582332 MsG0380018037.01.T01:three_prime_UTR 40.0%
CAGGCAAATTACTGATGCTT+GGG + Chr3:103583243-103583262 None:intergenic 40.0%
CAGTTGGATTCATCAGTGAA+CGG - Chr3:103583117-103583136 MsG0380018037.01.T01:intron 40.0%
CATTAACCCACATAGCAACA+AGG + Chr3:103582538-103582557 None:intergenic 40.0%
GAATCCAAGGAGAGTCAAAA+TGG - Chr3:103581561-103581580 MsG0380018037.01.T01:three_prime_UTR 40.0%
GACAAAAGGTTAAGGTACGA+AGG + Chr3:103583863-103583882 None:intergenic 40.0%
GGCAAATTGCAAGACGTTAT+CGG + Chr3:103581629-103581648 None:intergenic 40.0%
GTTAGTTCATCACTACGCAT+AGG - Chr3:103582406-103582425 MsG0380018037.01.T01:CDS 40.0%
GTTTCCCCACAATTATGAGA+TGG - Chr3:103582500-103582519 MsG0380018037.01.T01:CDS 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG + Chr3:103581650-103581669 None:intergenic 40.0%
TATAGTTGCAGTTGCAGTTG+CGG + Chr3:103581479-103581498 None:intergenic 40.0%
TCTCATAATTGTGGGGAAAC+CGG + Chr3:103582500-103582519 None:intergenic 40.0%
TGTCTCCTATACTCTCATCT+TGG + Chr3:103583671-103583690 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG - Chr3:103582478-103582497 MsG0380018037.01.T01:CDS 40.0%
! ACTTTTACTTCAGTGGCATG+TGG - Chr3:103584165-103584184 MsG0380018037.01.T01:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG - Chr3:103583170-103583189 MsG0380018037.01.T01:intron 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG + Chr3:103582131-103582150 None:intergenic 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG - Chr3:103581987-103582006 MsG0380018037.01.T01:three_prime_UTR 40.0%
! CTTTTACTTCAGTGGCATGT+GGG - Chr3:103584166-103584185 MsG0380018037.01.T01:CDS 40.0%
! GATTTTCACTGCCTCTTGTA+TGG - Chr3:103582606-103582625 MsG0380018037.01.T01:intron 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG - Chr3:103582152-103582171 MsG0380018037.01.T01:three_prime_UTR 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG - Chr3:103582153-103582172 MsG0380018037.01.T01:three_prime_UTR 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG - Chr3:103582145-103582164 MsG0380018037.01.T01:three_prime_UTR 40.0%
!! TGAAATCACCGCTGATTTAC+AGG - Chr3:103581714-103581733 MsG0380018037.01.T01:three_prime_UTR 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG - Chr3:103582024-103582043 MsG0380018037.01.T01:three_prime_UTR 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG + Chr3:103582056-103582075 None:intergenic 40.0%
ACATACCTACCAACACTGCA+TGG + Chr3:103583287-103583306 None:intergenic 45.0%
AGATGAAAGAGGGAAGGAAG+TGG - Chr3:103582030-103582049 MsG0380018037.01.T01:three_prime_UTR 45.0%
ATCAGCGGTGATTTCAACGT+CGG + Chr3:103581710-103581729 None:intergenic 45.0%
CAAGAAACTGAGAGATGGTC+CGG + Chr3:103582270-103582289 None:intergenic 45.0%
CAGATGAAGACGATGCTGAT+TGG - Chr3:103583169-103583188 MsG0380018037.01.T01:intron 45.0%
CGGTTATTACATCGCCAACA+AGG + Chr3:103581451-103581470 None:intergenic 45.0%
CTGTCATGTAATGCTGTGGT+TGG - Chr3:103581949-103581968 MsG0380018037.01.T01:three_prime_UTR 45.0%
GAAAATTTGTGCTGGGAAGG+AGG + Chr3:103582294-103582313 None:intergenic 45.0%
GAAGATGAAGACCCTGAAGA+AGG - Chr3:103583192-103583211 MsG0380018037.01.T01:intron 45.0%
GAGGTAAGAATCAGCACCTA+AGG + Chr3:103581668-103581687 None:intergenic 45.0%
GAGGTCAAGAAACTGAGAGA+TGG + Chr3:103582275-103582294 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG + Chr3:103581754-103581773 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG - Chr3:103581649-103581668 MsG0380018037.01.T01:three_prime_UTR 45.0%
TTCCACCCATTCAAACTTCC+AGG - Chr3:103583035-103583054 MsG0380018037.01.T01:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG - Chr3:103582724-103582743 MsG0380018037.01.T01:intron 45.0%
! AACTCCCGAGATACGCTTTT+TGG - Chr3:103582123-103582142 MsG0380018037.01.T01:three_prime_UTR 45.0%
! GTGTTGTTCTGTTTCGGCTT+TGG - Chr3:103582238-103582257 MsG0380018037.01.T01:three_prime_UTR 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG + Chr3:103582130-103582149 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG - Chr3:103582649-103582668 MsG0380018037.01.T01:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG - Chr3:103582650-103582669 MsG0380018037.01.T01:intron 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG + Chr3:103581568-103581587 None:intergenic 45.0%
AACTGAGAGATGGTCCGGAA+AGG + Chr3:103582265-103582284 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG - Chr3:103582528-103582547 MsG0380018037.01.T01:CDS 50.0%
ACTGAGAGATGGTCCGGAAA+GGG + Chr3:103582264-103582283 None:intergenic 50.0%
ATAATTGTGGGGAAACCGGC+AGG + Chr3:103582496-103582515 None:intergenic 50.0%
ATGGAGAGACCATGCAGTGT+TGG - Chr3:103583275-103583294 MsG0380018037.01.T01:intron 50.0%
CTAGGCCCTTGTTGCTATGT+GGG - Chr3:103582529-103582548 MsG0380018037.01.T01:CDS 50.0%
GACCTGGAAGTTTGAATGGG+TGG + Chr3:103583040-103583059 None:intergenic 50.0%
GGTGATTTCAACGTCGGTGA+TGG + Chr3:103581704-103581723 None:intergenic 50.0%
TCAGCACCTAAGGAAGCTTC+AGG + Chr3:103581658-103581677 None:intergenic 50.0%
! GATTTCAACGTCGGTGATGG+TGG + Chr3:103581701-103581720 None:intergenic 50.0%
!! AGAGACCATGCAGTGTTGGT+AGG - Chr3:103583279-103583298 MsG0380018037.01.T01:intron 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG + Chr3:103582930-103582949 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG - Chr3:103582126-103582145 MsG0380018037.01.T01:three_prime_UTR 50.0%
AAGAGGGAAGGAAGTGGCCA+TGG - Chr3:103582036-103582055 MsG0380018037.01.T01:three_prime_UTR 55.0%
CAAGGTGTGAGTGTGACCGA+TGG + Chr3:103581433-103581452 None:intergenic 55.0%
CAGTTGCAGTTGCGGTTGTG+CGG + Chr3:103581471-103581490 None:intergenic 55.0%
CGGTCACACTCACACCTTGT+TGG - Chr3:103581434-103581453 MsG0380018037.01.T01:three_prime_UTR 55.0%
GACGCAATTGCTTCACACCG+CGG - Chr3:103581396-103581415 MsG0380018037.01.T01:three_prime_UTR 55.0%
GGGAAACCGGCAGGAAATCA+CGG + Chr3:103582487-103582506 None:intergenic 55.0%
TGGCGTGCATAAGTGAGCAC+TGG + Chr3:103582936-103582955 None:intergenic 55.0%
! ATGTTCGCAGTGAGTTGGGG+AGG - Chr3:103582083-103582102 MsG0380018037.01.T01:three_prime_UTR 55.0%
! GTTTCGGCTTTGGCCCTTTC+CGG - Chr3:103582248-103582267 MsG0380018037.01.T01:three_prime_UTR 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG - Chr3:103582098-103582117 MsG0380018037.01.T01:three_prime_UTR 55.0%
!! AACGTCGGTGATGGTGGTGA+CGG + Chr3:103581695-103581714 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG - Chr3:103582653-103582672 MsG0380018037.01.T01:intron 55.0%
!! TGATGGTGGTGACGGAAGAG+AGG + Chr3:103581687-103581706 None:intergenic 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG - Chr3:103582654-103582673 MsG0380018037.01.T01:intron 55.0%
ATGGACCCACTCACGCCTCT+GGG + Chr3:103581509-103581528 None:intergenic 60.0%
CGATGGTATCAGTGCAGCCG+CGG + Chr3:103581416-103581435 None:intergenic 60.0%
GGAAGGAAGTGGCCATGGCT+GGG - Chr3:103582041-103582060 MsG0380018037.01.T01:three_prime_UTR 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG - Chr3:103582662-103582681 MsG0380018037.01.T01:intron 60.0%
! CGCGGCTGCACTGATACCAT+CGG - Chr3:103581414-103581433 MsG0380018037.01.T01:three_prime_UTR 60.0%
! TCAGACCCAGAGGCGTGAGT+GGG - Chr3:103581501-103581520 MsG0380018037.01.T01:three_prime_UTR 60.0%
! TTCAGACCCAGAGGCGTGAG+TGG - Chr3:103581500-103581519 MsG0380018037.01.T01:three_prime_UTR 60.0%
CATGGACCCACTCACGCCTC+TGG + Chr3:103581510-103581529 None:intergenic 65.0%
GGGAAGGAAGTGGCCATGGC+TGG - Chr3:103582040-103582059 MsG0380018037.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103581332 103584294 103581332 ID=MsG0380018037.01;Name=MsG0380018037.01
Chr3 mRNA 103581332 103584294 103581332 ID=MsG0380018037.01.T01;Parent=MsG0380018037.01;Name=MsG0380018037.01.T01;_AED=0.48;_eAED=0.48;_QI=56|1|1|1|1|1|3|1061|232
Chr3 exon 103581332 103582569 103581332 ID=MsG0380018037.01.T01:exon:27611;Parent=MsG0380018037.01.T01
Chr3 exon 103583452 103583625 103583452 ID=MsG0380018037.01.T01:exon:27610;Parent=MsG0380018037.01.T01
Chr3 exon 103583891 103584294 103583891 ID=MsG0380018037.01.T01:exon:27609;Parent=MsG0380018037.01.T01
Chr3 five_prime_UTR 103584239 103584294 103584239 ID=MsG0380018037.01.T01:five_prime_utr;Parent=MsG0380018037.01.T01
Chr3 CDS 103583891 103584238 103583891 ID=MsG0380018037.01.T01:cds;Parent=MsG0380018037.01.T01
Chr3 CDS 103583452 103583625 103583452 ID=MsG0380018037.01.T01:cds;Parent=MsG0380018037.01.T01
Chr3 CDS 103582393 103582569 103582393 ID=MsG0380018037.01.T01:cds;Parent=MsG0380018037.01.T01
Chr3 three_prime_UTR 103581332 103582392 103581332 ID=MsG0380018037.01.T01:three_prime_utr;Parent=MsG0380018037.01.T01
Gene Sequence

>MsG0380018037.01.T01

ATGAGCACGACGCAATTGCTTCACACCGCGGCTGCACTGATACCATCGGTCACACTCACACCTTGTTGGCGATGTAATAACCGCACAACCGCAACTGCAACTGCAACTATATTTCAGACCCAGAGGCGTGAGTGGGTCCATGCTTCAAGAATAATGAGGATAAAATGTATGGCGAATCCAAGGAGAGTCAAAATGGTTGCCAAACAAATTAGGAGAGAACTTTCTGATATGCTCATCACCGATAACGTCTTGCAATTTGCCGTTCTTCCTGAAGCTTCCTTAGGTGCTGATTCTTACCTCTCTTCCGTCACCACCATCACCGACGTTGAAATCACCGCTGATTTACAGGTCGTTAGGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTGGCCATGGCTGGGTTGAAATCAAAAGCCAAATATGTTCGCAGTGAGTTGGGGAGGCGTATGAAGTTGCGGTTAACTCCCGAGATACGCTTTTTGGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAAATTAAGAATGAGAAGAGTGAAACAAGCAAAAACATGGAGCAGTTGGATTCATCAGTGAACGGAGATGACACTGAGCAGTTGAATTCATCATCAGATGAAGACGATGCTGATTGGGAAGATGAAGACCCTGAAGAAGGTATCATTTATGTGGAATAG

Protein sequence

>MsG0380018037.01.T01

MSTTQLLHTAAALIPSVTLTPCWRCNNRTTATATATIFQTQRREWVHASRIMRIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITADLQVVRVYVSVFGDERGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSSSDEDDADWEDEDPEEGIIYVE*