AlfalfaGEDB | MsG0780039336.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039336.01

KEGG: -
GO: GO:0008152 GO:0016758
PFAM: PF00201

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039336.01.T01	RHN46577.1	70.794	315	79	3	1	309	23	330	2.84E-147	427

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039336.01.T01	D4Q9Z4	59.296	199	79	2	110	308	296	492	1.02E-72	235

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039336.01.T01	A0A396H6H3	70.794	315	79	3	1	309	23	330	1.36e-147	427

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0780039336.01	0.866219	3.345005e-65	1.118612e-61
MsG0080048845.01	MsG0780039336.01	0.811999	5.284626e-51	3.320367e-48
MsG0080048849.01	MsG0780039336.01	0.835974	1.227427e-56	1.525301e-53
MsG0080048938.01	MsG0780039336.01	0.872552	2.914007e-67	1.224652e-63
MsG0080048940.01	MsG0780039336.01	0.812189	4.804637e-51	3.034492e-48
MsG0080049002.01	MsG0780039336.01	0.804376	2.225913e-49	1.145865e-46
MsG0080049069.01	MsG0780039336.01	0.814996	1.159253e-51	7.896576e-49
MsG0180000017.01	MsG0780039336.01	0.817278	3.582969e-52	2.597744e-49
MsG0180000113.01	MsG0780039336.01	0.810348	1.205332e-50	7.248211e-48
MsG0180000129.01	MsG0780039336.01	0.802262	6.098061e-49	2.973773e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039336.01.T01	MTR_7g070780	81.910	199	36	0	111	309	299	497	1.50e-114	340
MsG0780039336.01.T01	MTR_7g070780	79.630	108	22	0	1	108	23	130	1.65e-52	179
MsG0780039336.01.T01	MTR_4g108250	79.899	199	40	0	111	309	303	501	6.55e-113	336
MsG0780039336.01.T01	MTR_4g108250	77.477	111	22	1	1	108	23	133	7.08e-52	178
MsG0780039336.01.T01	MTR_7g070740	78.431	204	44	0	106	309	294	497	1.62e-111	332
MsG0780039336.01.T01	MTR_7g070740	82.407	108	19	0	1	108	23	130	4.85e-54	184
MsG0780039336.01.T01	MTR_7g071040	79.500	200	41	0	110	309	305	504	3.22e-111	332
MsG0780039336.01.T01	MTR_7g071040	58.861	158	50	2	1	148	29	181	1.05e-47	167
MsG0780039336.01.T01	MTR_7g070910	79.500	200	41	0	110	309	299	498	7.98e-111	330
MsG0780039336.01.T01	MTR_7g070910	73.148	108	29	0	1	108	23	130	3.23e-48	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039336.01.T01	AT2G15490	50.262	191	86	4	110	299	299	481	1.15e-53	182
MsG0780039336.01.T01	AT2G15490	29.060	117	73	3	1	108	19	134	3.77e-12	67.0
MsG0780039336.01.T01	AT2G15490	49.485	194	86	4	110	299	299	484	4.85e-53	181
MsG0780039336.01.T01	AT2G15490	29.060	117	73	3	1	108	19	134	3.89e-12	67.0
MsG0780039336.01.T01	AT2G15480	48.936	188	87	4	113	299	305	484	4.81e-51	176
MsG0780039336.01.T01	AT2G15480	28.448	116	75	2	1	108	22	137	2.87e-12	67.4
MsG0780039336.01.T01	AT4G34131	52.151	186	79	5	113	297	305	481	7.76e-51	175
MsG0780039336.01.T01	AT4G34131	32.759	116	70	2	1	108	22	137	7.29e-15	75.1
MsG0780039336.01.T01	AT2G15480	46.193	197	89	4	113	299	305	494	4.65e-50	173
MsG0780039336.01.T01	AT2G15480	28.448	116	75	2	1	108	22	137	3.00e-12	67.4

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Find 52 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGCCATGTGATCAT+TGG	0.469481	7:+62184237	None:intergenic
AACTTGTAGAAATTGCACAT+GGG	0.699495	7:-62184488	MsG0780039336.01.T01:CDS
AATAGGACTATCGAGGAAGG+TGG	0.646523	7:-62184003	MsG0780039336.01.T01:CDS
ACAAAACCTCGATTGAATCT+TGG	0.447115	7:+62185064	None:intergenic
ACATTGGACCACCCTGCAAC+AGG	0.430334	7:-62184318	MsG0780039336.01.T01:CDS
ACCTTCCTCGATAGTCCTAT+TGG	0.479883	7:+62184005	None:intergenic
ACGAAAATATGATAGAGATG+AGG	0.647917	7:-62184430	MsG0780039336.01.T01:CDS
AGCTTGGCGATGCTGCCAAT+AGG	0.520876	7:-62184020	MsG0780039336.01.T01:CDS
AGGGCTATATCATATGGGAT+TGG	0.493309	7:-62184356	MsG0780039336.01.T01:CDS
AGTCTTGCTGTGTCTATCAT+GGG	0.552969	7:+62185309	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGTAGAAATTGCACAT+GGG	-	Chr7:62184745-62184764	MsG0780039336.01.T01:intron	30.0%
AAGAGACAGAATTGCTAAAT+TGG	-	Chr7:62184652-62184671	MsG0780039336.01.T01:intron	30.0%
ACGAAAATATGATAGAGATG+AGG	-	Chr7:62184803-62184822	MsG0780039336.01.T01:intron	30.0%
AGAATGAAAGCTAAAAAGCT+TGG	-	Chr7:62185197-62185216	MsG0780039336.01.T01:CDS	30.0%
ATAGATAGTGACTTCAATTC+AGG	-	Chr7:62184017-62184036	MsG0780039336.01.T01:CDS	30.0%
ATATCAGTGACTATACAATC+AGG	+	Chr7:62184209-62184228	None:intergenic	30.0%
CTACAATGGAAATCAAATCT+TGG	-	Chr7:62184548-62184567	MsG0780039336.01.T01:intron	30.0%
GATGAAAGAAAGACTAATAG+GGG	-	Chr7:62184607-62184626	MsG0780039336.01.T01:intron	30.0%
GTTAAATTGCTCAGCAAAAA+TGG	+	Chr7:62185015-62185034	None:intergenic	30.0%
TCAATTGTATGAGGAAAACT+AGG	+	Chr7:62184390-62184409	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	62183918	62185337	62183918	ID=MsG0780039336.01;Name=MsG0780039336.01
Chr7	mRNA	62183918	62185337	62183918	ID=MsG0780039336.01.T01;Parent=MsG0780039336.01;Name=MsG0780039336.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0\|0\|1\|1\|1\|2\|0\|309
Chr7	exon	62185024	62185337	62185024	ID=MsG0780039336.01.T01:exon:16270;Parent=MsG0780039336.01.T01
Chr7	exon	62183918	62184533	62183918	ID=MsG0780039336.01.T01:exon:16271;Parent=MsG0780039336.01.T01
Chr7	CDS	62185024	62185337	62185024	ID=MsG0780039336.01.T01:cds;Parent=MsG0780039336.01.T01
Chr7	CDS	62183918	62184533	62183918	ID=MsG0780039336.01.T01:cds;Parent=MsG0780039336.01.T01

Gene Sequence

>MsG0780039336.01.T01

ATGAATCCCATGATAGACACAGCAAGACTATTTGCCAAACATGGTGTTAATGTTACCATCATCACTACACATGCTAATGCTTCAACATTCCAAAAATCTATAGATAGTGACTTCAATTCAGGATACCGTATTAAAACGCATCTTATTCAGTTCCCTTCAGCTCAAGTTGGTCTCCCTGATGGTGTTGAAAACTTCAAACATGGAACTTCACTTGAAATGCTTGGTAAAATCAACCTTGCGATACCGATGCTCCAAGATTCAATCGAGGTTTTGTTTCAAGAACTTCAACCTGATTGTATAGTCACTGATATGCTCCTTGTTTGGCATCCTTATGCTCAACTTGTAGAAATTGCACATGGGCTTGAAAATTCATGTCATAATTTTATCTGGGTCGTACGAAAATATGATAGAGATGAGGATGAAGATGGTTTCCTGCAAAAATTTGAGGGAAGGTTGAAAAAAAGCGGAAAGGGCTATATCATATGGGATTGGGCACCGCAACTTCTGACATTGGACCACCCTGCAACAGGAGGGATTGTGACTCACTGTGGTTGGAACTCAATTCTCGAAAGCTTGAATGCTGGTTTGCCAATGATCACATGGCCCATTTTTGCTGAGCAATTTAACAACGAGAAGTTTCTTGTTGATGTTTTGAAGATTGGAGTTTCTGTTGGATCAAAAGAGAACGAGTTTTGGAATAGAATTAGTGTAGTAGCAATTGTGAGAAGGGAAGAGATTGCAAAGGCTATTGAGATTTTGATGGGAAGTGGACAAGAGAGCAAAGAAATGAGAATGAAAGCTAAAAAGCTTGGCGATGCTGCCAATAGGACTATCGAGGAAGGTGGACACTCTTACAACAACTTGACTCAGTTGATTGATGAACTGAAATCATTGAAGAAATCCAAAGAACTTGGTGAGAAAGCAGATTAG

Protein sequence

>MsG0780039336.01.T01

MNPMIDTARLFAKHGVNVTIITTHANASTFQKSIDSDFNSGYRIKTHLIQFPSAQVGLPDGVENFKHGTSLEMLGKINLAIPMLQDSIEVLFQELQPDCIVTDMLLVWHPYAQLVEIAHGLENSCHNFIWVVRKYDRDEDEDGFLQKFEGRLKKSGKGYIIWDWAPQLLTLDHPATGGIVTHCGWNSILESLNAGLPMITWPIFAEQFNNEKFLVDVLKIGVSVGSKENEFWNRISVVAIVRREEIAKAIEILMGSGQESKEMRMKAKKLGDAANRTIEEGGHSYNNLTQLIDELKSLKKSKELGEKAD*