AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030566.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030566.01.T01 MTR_6g015855 98.165 109 2 0 37 145 1 109 4.87e-79 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030566.01.T01 AT3G02220 73.394 109 29 0 40 148 2 110 2.58e-56 176

Find 34 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATCTTGTTCTGATGTT+TGG 0.198438 6:-5339183 None:intergenic
GCAATCTTGTTCTGATGTTT+GGG 0.223992 6:-5339182 None:intergenic
TTGAAATGTTACAATGAATT+TGG 0.244338 6:+5338189 MsG0680030566.01.T01:CDS
ACTTACCAAAACACAAATTA+TGG 0.278010 6:-5339675 None:intergenic
GCTTACCATAATTTGTGTTT+TGG 0.291297 6:+5339670 MsG0680030566.01.T01:CDS
AGACCTTTATCTGAGATAAC+TGG 0.364849 6:+5339391 MsG0680030566.01.T01:CDS
ATTGATTGGAAACGACGTTA+TGG 0.377560 6:+5339439 MsG0680030566.01.T01:CDS
TTGATCTTGATACCAGCATT+AGG 0.386924 6:-5339212 None:intergenic
ATGAGTGCCGGCAAGAAAAC+TGG 0.395264 6:+5339155 MsG0680030566.01.T01:CDS
TACAATGAATTTGGTTATGT+TGG 0.427713 6:+5338198 MsG0680030566.01.T01:CDS
GCTGTAAGGAACAAATTGAT+TGG 0.439014 6:+5339425 MsG0680030566.01.T01:CDS
TGGAGTGTGCCCTCGCTGTA+AGG 0.457705 6:+5339411 MsG0680030566.01.T01:CDS
AAGAGCTCGAATTTGCGAAC+AGG 0.458037 6:+5338158 MsG0680030566.01.T01:CDS
ACTCCAGTTATCTCAGATAA+AGG 0.465886 6:-5339394 None:intergenic
AACATCAGAACAAGATTGCT+TGG 0.468716 6:+5339186 MsG0680030566.01.T01:CDS
TACAATACAATACAGGAAGT+TGG 0.468789 6:+5339358 MsG0680030566.01.T01:intron
AACACAAATTATGGTAAGCT+TGG 0.472000 6:-5339666 None:intergenic
ACAAAATAGTACCATTTGGC+AGG 0.479661 6:-5339484 None:intergenic
CTCTTCATGAACCTGCCAAA+TGG 0.510075 6:+5339473 MsG0680030566.01.T01:CDS
TGCCGTGTGGAGCGTATAGT+TGG 0.518767 6:+5340404 MsG0680030566.01.T01:CDS
ATCTTGTTCTGATGTTTGGG+GGG 0.541127 6:-5339179 None:intergenic
CAATCTTGTTCTGATGTTTG+GGG 0.555523 6:-5339181 None:intergenic
CATTTGGCAGGTTCATGAAG+AGG 0.559116 6:-5339472 None:intergenic
ATTGCTTGGAAACCTAATGC+TGG 0.569537 6:+5339200 MsG0680030566.01.T01:CDS
CAATTTGTTCCTTACAGCGA+GGG 0.578776 6:-5339420 None:intergenic
TGCAAAATGTTGTTGCCGTG+TGG 0.586536 6:+5340391 MsG0680030566.01.T01:CDS
AATCTTGTTCTGATGTTTGG+GGG 0.588157 6:-5339180 None:intergenic
GAAGTAGTGAAGATGAGTGC+CGG 0.594461 6:+5339143 MsG0680030566.01.T01:CDS
AGAGCTCGAATTTGCGAACA+GGG 0.603262 6:+5338159 MsG0680030566.01.T01:CDS
AATACAATACAGGAAGTTGG+AGG 0.627150 6:+5339361 MsG0680030566.01.T01:intron
GTGTGGAGCGTATAGTTGGA+AGG 0.650040 6:+5340408 MsG0680030566.01.T01:CDS
TTCCAACTATACGCTCCACA+CGG 0.655201 6:-5340406 None:intergenic
TCAATTTGTTCCTTACAGCG+AGG 0.657795 6:-5339421 None:intergenic
TGTTTGTGTAGGTTGTGCGA+AGG 0.667969 6:+5340355 MsG0680030566.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATACAAATAATCAAAA+AGG - Chr6:5340321-5340340 None:intergenic 10.0%
!! AATGTAAATATACAAAAAGA+AGG - Chr6:5339516-5339535 None:intergenic 15.0%
!! AATTAGTATAAAACTGAAAA+TGG + Chr6:5340290-5340309 MsG0680030566.01.T01:intron 15.0%
!! ATTAGTATAAAACTGAAAAT+GGG + Chr6:5340291-5340310 MsG0680030566.01.T01:intron 15.0%
!! CATATCATACTAATATTAAT+AGG - Chr6:5340056-5340075 None:intergenic 15.0%
!! CTAAATTATTAGTTGAATAT+GGG + Chr6:5339765-5339784 MsG0680030566.01.T01:intron 15.0%
!! CTATTAATATTAGTATGATA+TGG + Chr6:5340054-5340073 MsG0680030566.01.T01:intron 15.0%
!! TTATTATAAATAAGATGTAG+AGG - Chr6:5338880-5338899 None:intergenic 15.0%
!!! ATTATTTGTATTTTACTGAT+TGG + Chr6:5340326-5340345 MsG0680030566.01.T01:intron 15.0%
!!! TTGATCTTTCTTTTTATTTT+GGG + Chr6:5339721-5339740 MsG0680030566.01.T01:intron 15.0%
!!! TTTGATCTTTCTTTTTATTT+TGG + Chr6:5339720-5339739 MsG0680030566.01.T01:intron 15.0%
!! AAAAACAAAATAGTACCATT+TGG - Chr6:5339491-5339510 None:intergenic 20.0%
!! GAAATATGATTGAACATTTA+AGG + Chr6:5340245-5340264 MsG0680030566.01.T01:intron 20.0%
!! GATTGATTAATTAGTTAACT+GGG + Chr6:5339586-5339605 MsG0680030566.01.T01:intron 20.0%
!! GCTAAATTATTAGTTGAATA+TGG + Chr6:5339764-5339783 MsG0680030566.01.T01:intron 20.0%
!! TAATATTAGTATGATATGGA+AGG + Chr6:5340058-5340077 MsG0680030566.01.T01:intron 20.0%
!! TGATTGATTAATTAGTTAAC+TGG + Chr6:5339585-5339604 MsG0680030566.01.T01:intron 20.0%
!! TTGAAATGTTACAATGAATT+TGG + Chr6:5338189-5338208 MsG0680030566.01.T01:CDS 20.0%
!!! AAAAATCATTTTTAGGGTTT+TGG + Chr6:5338451-5338470 MsG0680030566.01.T01:intron 20.0%
!!! AAGTGATTTTAAAAATTGAG+TGG + Chr6:5339032-5339051 MsG0680030566.01.T01:intron 20.0%
!!! ATTTTTAAAATCACTTCTGA+AGG - Chr6:5339028-5339047 None:intergenic 20.0%
!!! GTTTTATACTAATTTCATCT+AGG - Chr6:5340284-5340303 None:intergenic 20.0%
!!! TGATCTTTCTTTTTATTTTG+GGG + Chr6:5339722-5339741 MsG0680030566.01.T01:intron 20.0%
! ACTTACCAAAACACAAATTA+TGG - Chr6:5339678-5339697 None:intergenic 25.0%
! AGTTGAATATGGGAAAAAAT+TGG + Chr6:5339775-5339794 MsG0680030566.01.T01:intron 25.0%
! ATAAAAACAGTGAGTGTAAA+CGG + Chr6:5340182-5340201 MsG0680030566.01.T01:intron 25.0%
! ATTTACCATGTGTTTCTTAT+GGG + Chr6:5338368-5338387 MsG0680030566.01.T01:intron 25.0%
! TAAATGTGATTCCTAGTTAT+GGG + Chr6:5339059-5339078 MsG0680030566.01.T01:intron 25.0%
! TACAATGAATTTGGTTATGT+TGG + Chr6:5338198-5338217 MsG0680030566.01.T01:CDS 25.0%
! TATGATATGGAAGGAAATAA+TGG + Chr6:5340067-5340086 MsG0680030566.01.T01:intron 25.0%
!! AAAAGAAAAAAGGGTGATTT+TGG - Chr6:5339268-5339287 None:intergenic 25.0%
!! ATGGGAAAAAATTGGATTTT+TGG + Chr6:5339783-5339802 MsG0680030566.01.T01:intron 25.0%
!! TGGGAAAAAATTGGATTTTT+GGG + Chr6:5339784-5339803 MsG0680030566.01.T01:intron 25.0%
!! TTCTAGTATTGTTTGTGTTT+TGG + Chr6:5338409-5338428 MsG0680030566.01.T01:intron 25.0%
!!! ATAATGGATTTTTAGTAGTG+TGG + Chr6:5340083-5340102 MsG0680030566.01.T01:intron 25.0%
!!! ATTGGTTTTTATGTTTGTGT+AGG + Chr6:5340344-5340363 MsG0680030566.01.T01:intron 25.0%
!!! TTGTGTTTTGGTAAATTTGT+TGG + Chr6:5338421-5338440 MsG0680030566.01.T01:intron 25.0%
!!! TTTGTTTTGTTCCCATTTTT+TGG + Chr6:5339550-5339569 MsG0680030566.01.T01:intron 25.0%
!!! TTTTGGCTAAATCCAAAATT+GGG + Chr6:5338468-5338487 MsG0680030566.01.T01:intron 25.0%
AAATGTGATTCCTAGTTATG+GGG + Chr6:5339060-5339079 MsG0680030566.01.T01:intron 30.0%
AACACAAATTATGGTAAGCT+TGG - Chr6:5339669-5339688 None:intergenic 30.0%
AACTTCTATGTAACAGCTAT+AGG - Chr6:5338908-5338927 None:intergenic 30.0%
ATCAACGAAATGCCAAAAAA+TGG - Chr6:5339565-5339584 None:intergenic 30.0%
CAACAAACCAAACAACAAAA+AGG - Chr6:5339616-5339635 None:intergenic 30.0%
CACACAATACAATACAATAC+AGG + Chr6:5339351-5339370 MsG0680030566.01.T01:intron 30.0%
GATTTACCATGTGTTTCTTA+TGG + Chr6:5338367-5338386 MsG0680030566.01.T01:intron 30.0%
GATTTGAACTAGTAACACAA+TGG + Chr6:5340208-5340227 MsG0680030566.01.T01:intron 30.0%
GTAAATGTGATTCCTAGTTA+TGG + Chr6:5339058-5339077 MsG0680030566.01.T01:intron 30.0%
TAAGATGTAGAGGAAAAGAA+AGG - Chr6:5338870-5338889 None:intergenic 30.0%
TACAATACAATACAGGAAGT+TGG + Chr6:5339358-5339377 MsG0680030566.01.T01:intron 30.0%
TCAACGAAATGCCAAAAAAT+GGG - Chr6:5339564-5339583 None:intergenic 30.0%
TTTGGCTAAATCCAAAATTG+GGG + Chr6:5338469-5338488 MsG0680030566.01.T01:intron 30.0%
TTTGTAGCTTCTGTAAATCA+CGG - Chr6:5339978-5339997 None:intergenic 30.0%
! TGAGTTGAACATGTTTCTAA+TGG + Chr6:5338678-5338697 MsG0680030566.01.T01:intron 30.0%
!! ATTTAGAACTTGGTCTCTTT+TGG + Chr6:5338580-5338599 MsG0680030566.01.T01:intron 30.0%
!! ATTTTGACGCATTTAGAACT+TGG + Chr6:5338570-5338589 MsG0680030566.01.T01:intron 30.0%
!! GCTTACCATAATTTGTGTTT+TGG + Chr6:5339670-5339689 MsG0680030566.01.T01:CDS 30.0%
!!! ATTTTGGGGATTTGTTAGAT+GGG + Chr6:5339736-5339755 MsG0680030566.01.T01:intron 30.0%
!!! GTTTTGGCTAAATCCAAAAT+TGG + Chr6:5338467-5338486 MsG0680030566.01.T01:intron 30.0%
!!! TATTTTGGGGATTTGTTAGA+TGG + Chr6:5339735-5339754 MsG0680030566.01.T01:intron 30.0%
AACACAATGGCATTGTAAGA+TGG + Chr6:5340221-5340240 MsG0680030566.01.T01:intron 35.0%
AACATCAGAACAAGATTGCT+TGG + Chr6:5339186-5339205 MsG0680030566.01.T01:CDS 35.0%
AATACAATACAGGAAGTTGG+AGG + Chr6:5339361-5339380 MsG0680030566.01.T01:intron 35.0%
AATCACGGTCAAAATTGCAT+TGG - Chr6:5339963-5339982 None:intergenic 35.0%
AATCTTGTTCTGATGTTTGG+GGG - Chr6:5339183-5339202 None:intergenic 35.0%
ACAAAATAGTACCATTTGGC+AGG - Chr6:5339487-5339506 None:intergenic 35.0%
ACTCCAGTTATCTCAGATAA+AGG - Chr6:5339397-5339416 None:intergenic 35.0%
AGCAATCTTGTTCTGATGTT+TGG - Chr6:5339186-5339205 None:intergenic 35.0%
ATCACGGTCAAAATTGCATT+GGG - Chr6:5339962-5339981 None:intergenic 35.0%
ATTGATTGGAAACGACGTTA+TGG + Chr6:5339439-5339458 MsG0680030566.01.T01:CDS 35.0%
CAATCTTGTTCTGATGTTTG+GGG - Chr6:5339184-5339203 None:intergenic 35.0%
CATAACCCATAAGAAACACA+TGG - Chr6:5338376-5338395 None:intergenic 35.0%
GAACACATGTTTGTGAAAAG+TGG + Chr6:5339872-5339891 MsG0680030566.01.T01:intron 35.0%
GCAATCTTGTTCTGATGTTT+GGG - Chr6:5339185-5339204 None:intergenic 35.0%
GCTGTAAGGAACAAATTGAT+TGG + Chr6:5339425-5339444 MsG0680030566.01.T01:CDS 35.0%
TGGAGGCTGAAAGAAAAAAA+GGG + Chr6:5340103-5340122 MsG0680030566.01.T01:intron 35.0%
TTGATCTTGATACCAGCATT+AGG - Chr6:5339215-5339234 None:intergenic 35.0%
! AACTTGGTCTCTTTTGGTAT+AGG + Chr6:5338586-5338605 MsG0680030566.01.T01:intron 35.0%
! AGACCTTTATCTGAGATAAC+TGG + Chr6:5339391-5339410 MsG0680030566.01.T01:CDS 35.0%
! AGGATTGGATTTTGCAAACA+AGG + Chr6:5338606-5338625 MsG0680030566.01.T01:intron 35.0%
! AGTGCGTGAAAAGTGATTTT+GGG + Chr6:5340153-5340172 MsG0680030566.01.T01:intron 35.0%
! ATTGGGATAAAGGATTGGTA+GGG - Chr6:5338838-5338857 None:intergenic 35.0%
! CATGTGTTTCTTATGGGTTA+TGG + Chr6:5338374-5338393 MsG0680030566.01.T01:intron 35.0%
! GAATAGTAGTCTTGCCTTTA+AGG + Chr6:5338296-5338315 MsG0680030566.01.T01:intron 35.0%
!! AAAGAAAGGTATTCAGGGAT+TGG - Chr6:5338856-5338875 None:intergenic 35.0%
!! AAGAAAGGTATTCAGGGATT+GGG - Chr6:5338855-5338874 None:intergenic 35.0%
!! AGAGGAAAAGAAAGGTATTC+AGG - Chr6:5338862-5338881 None:intergenic 35.0%
!! GAGGAAAAGAAAGGTATTCA+GGG - Chr6:5338861-5338880 None:intergenic 35.0%
!! GGAGTTTGTGAGTTTTGTAA+TGG + Chr6:5339850-5339869 MsG0680030566.01.T01:intron 35.0%
!!! ATAGGCTGTTGTTTTCACAA+TGG - Chr6:5340038-5340057 None:intergenic 35.0%
!!! ATGGATTTTTAGTAGTGTGG+AGG + Chr6:5340086-5340105 MsG0680030566.01.T01:intron 35.0%
!!! TAGGCTGTTGTTTTCACAAT+GGG - Chr6:5340037-5340056 None:intergenic 35.0%
ACAATTTGCATCTTTGTCCC+AGG + Chr6:5339106-5339125 MsG0680030566.01.T01:intron 40.0%
ACCAAGACTCTCGAATTTCT+TGG - Chr6:5338782-5338801 None:intergenic 40.0%
AGGGTACGAGTTCAATTAGT+CGG + Chr6:5339829-5339848 MsG0680030566.01.T01:intron 40.0%
AGGGTACGAGTTCAATTAGT+TGG + Chr6:5339829-5339848 MsG0680030566.01.T01:intron 40.0%
ATCTTGTTCTGATGTTTGGG+GGG - Chr6:5339182-5339201 None:intergenic 40.0%
ATTCCTAGTTATGGGGTTTG+AGG + Chr6:5339067-5339086 MsG0680030566.01.T01:intron 40.0%
ATTCTATAACTGCTGCCCTT+AGG + Chr6:5338999-5339018 MsG0680030566.01.T01:intron 40.0%
ATTGCTTGGAAACCTAATGC+TGG + Chr6:5339200-5339219 MsG0680030566.01.T01:CDS 40.0%
CAATCCTTGAACCACCTTAA+AGG - Chr6:5338313-5338332 None:intergenic 40.0%
CAATTTGCATCTTTGTCCCA+GGG + Chr6:5339107-5339126 MsG0680030566.01.T01:intron 40.0%
CCAAGACTCTCGAATTTCTT+GGG - Chr6:5338781-5338800 None:intergenic 40.0%
CTGCAGAATTAGTGTACGTT+TGG + Chr6:5339908-5339927 MsG0680030566.01.T01:intron 40.0%
GTATTCAGGGATTGGGATAA+AGG - Chr6:5338848-5338867 None:intergenic 40.0%
GTGGAGGCTGAAAGAAAAAA+AGG + Chr6:5340102-5340121 MsG0680030566.01.T01:intron 40.0%
GTGTCAAACTCACATCTAAG+TGG - Chr6:5340010-5340029 None:intergenic 40.0%
GTTGAGGTGGAAAGAAAACA+GGG + Chr6:5339810-5339829 MsG0680030566.01.T01:intron 40.0%
GTTGCAACTTGCAATGAGTT+TGG + Chr6:5338642-5338661 MsG0680030566.01.T01:intron 40.0%
TGCAATGAGTTTGGTTGTGT+TGG + Chr6:5338651-5338670 MsG0680030566.01.T01:intron 40.0%
TGTTGAGGTGGAAAGAAAAC+AGG + Chr6:5339809-5339828 MsG0680030566.01.T01:intron 40.0%
! AAAATTGGGGTTTTGCTTGG+GGG + Chr6:5338482-5338501 MsG0680030566.01.T01:intron 40.0%
! CAAAATTGGGGTTTTGCTTG+GGG + Chr6:5338481-5338500 MsG0680030566.01.T01:intron 40.0%
! CAATTTGTTCCTTACAGCGA+GGG - Chr6:5339423-5339442 None:intergenic 40.0%
! CCAAAATTGGGGTTTTGCTT+GGG + Chr6:5338480-5338499 MsG0680030566.01.T01:intron 40.0%
! GAGTGCGTGAAAAGTGATTT+TGG + Chr6:5340152-5340171 MsG0680030566.01.T01:intron 40.0%
! GATTGGGATAAAGGATTGGT+AGG - Chr6:5338839-5338858 None:intergenic 40.0%
! GGTCTCTTTTGGTATAGGAT+TGG + Chr6:5338591-5338610 MsG0680030566.01.T01:intron 40.0%
! TAGTAGTCTTGCCTTTAAGG+TGG + Chr6:5338299-5338318 MsG0680030566.01.T01:intron 40.0%
! TATGGGGTTTGAGGCTTAAA+AGG + Chr6:5339076-5339095 MsG0680030566.01.T01:intron 40.0%
! TCAATTTGTTCCTTACAGCG+AGG - Chr6:5339424-5339443 None:intergenic 40.0%
! TCCAAAATTGGGGTTTTGCT+TGG + Chr6:5338479-5338498 MsG0680030566.01.T01:intron 40.0%
!!! GGGTTGTCCTTTTTGTTGTT+TGG + Chr6:5339606-5339625 MsG0680030566.01.T01:intron 40.0%
!!! TTGGATTTTTGGGAGTGTTG+AGG + Chr6:5339794-5339813 MsG0680030566.01.T01:intron 40.0%
AAGAGCTCGAATTTGCGAAC+AGG + Chr6:5338158-5338177 MsG0680030566.01.T01:CDS 45.0%
AAGCCTCAAACCCCATAACT+AGG - Chr6:5339073-5339092 None:intergenic 45.0%
AGAGCTCGAATTTGCGAACA+GGG + Chr6:5338159-5338178 MsG0680030566.01.T01:CDS 45.0%
CAGGGATTGGGATAAAGGAT+TGG - Chr6:5338843-5338862 None:intergenic 45.0%
CATTTGGCAGGTTCATGAAG+AGG - Chr6:5339475-5339494 None:intergenic 45.0%
CCCAAGAAATTCGAGAGTCT+TGG + Chr6:5338778-5338797 MsG0680030566.01.T01:intron 45.0%
CTCTTCATGAACCTGCCAAA+TGG + Chr6:5339473-5339492 MsG0680030566.01.T01:CDS 45.0%
GAAGTAGTGAAGATGAGTGC+CGG + Chr6:5339143-5339162 MsG0680030566.01.T01:CDS 45.0%
TGCAAAATGTTGTTGCCGTG+TGG + Chr6:5340391-5340410 MsG0680030566.01.T01:CDS 45.0%
TGTTTGTGTAGGTTGTGCGA+AGG + Chr6:5340355-5340374 MsG0680030566.01.T01:intron 45.0%
TTCCAACTATACGCTCCACA+CGG - Chr6:5340409-5340428 None:intergenic 45.0%
TTCTACGAATCTACGACCCT+GGG - Chr6:5339126-5339145 None:intergenic 45.0%
! AAATTGGGGTTTTGCTTGGG+GGG + Chr6:5338483-5338502 MsG0680030566.01.T01:intron 45.0%
! CACTTCTGAAGGACTCCTAA+GGG - Chr6:5339017-5339036 None:intergenic 45.0%
! CCCAAGCAAAACCCCAATTT+TGG - Chr6:5338483-5338502 None:intergenic 45.0%
! TCACTTCTGAAGGACTCCTA+AGG - Chr6:5339018-5339037 None:intergenic 45.0%
!! CTTGCCTTTAAGGTGGTTCA+AGG + Chr6:5338306-5338325 MsG0680030566.01.T01:intron 45.0%
!!! GATTTTTGGGAGTGTTGAGG+TGG + Chr6:5339797-5339816 MsG0680030566.01.T01:intron 45.0%
!! ATTTAATATTAAAAGAAAAA+AGG - Chr6:5339278-5339297 None:intergenic 5.0%
!! TTTAATATTAAAAGAAAAAA+GGG - Chr6:5339277-5339296 None:intergenic 5.0%
!!! AAAAAAAAAAAATCATTTTT+AGG + Chr6:5338444-5338463 MsG0680030566.01.T01:intron 5.0%
!!! AAAAAAAAAAATCATTTTTA+GGG + Chr6:5338445-5338464 MsG0680030566.01.T01:intron 5.0%
AGACCAAGCTCTCGGATTCT+TGG - Chr6:5338813-5338832 None:intergenic 50.0%
CTTCTACGAATCTACGACCC+TGG - Chr6:5339127-5339146 None:intergenic 50.0%
GTGTGGAGCGTATAGTTGGA+AGG + Chr6:5340408-5340427 MsG0680030566.01.T01:CDS 50.0%
!! ATGAGTGCCGGCAAGAAAAC+TGG + Chr6:5339155-5339174 MsG0680030566.01.T01:CDS 50.0%
!!! GGGGGGCGCATTTTTTTATG+TGG + Chr6:5338500-5338519 MsG0680030566.01.T01:intron 50.0%
CCAAGCTCTCGGATTCTTGG+AGG - Chr6:5338810-5338829 None:intergenic 55.0%
CCTCCAAGAATCCGAGAGCT+TGG + Chr6:5338807-5338826 MsG0680030566.01.T01:intron 55.0%
GTAGGGAGAGACCAAGCTCT+CGG - Chr6:5338821-5338840 None:intergenic 55.0%
TGCCGTGTGGAGCGTATAGT+TGG + Chr6:5340404-5340423 MsG0680030566.01.T01:CDS 55.0%
TGGAGTGTGCCCTCGCTGTA+AGG + Chr6:5339411-5339430 MsG0680030566.01.T01:CDS 60.0%
! GGGGGGACCAGTTTTCTTGC+CGG - Chr6:5339165-5339184 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 5338153 5340451 5338153 ID=MsG0680030566.01;Name=MsG0680030566.01
Chr6 mRNA 5338153 5340451 5338153 ID=MsG0680030566.01.T01;Parent=MsG0680030566.01;Name=MsG0680030566.01.T01;_AED=0.48;_eAED=0.60;_QI=0|0.75|0.6|1|1|1|5|0|151
Chr6 exon 5338153 5338233 5338153 ID=MsG0680030566.01.T01:exon:4382;Parent=MsG0680030566.01.T01
Chr6 exon 5339128 5339241 5339128 ID=MsG0680030566.01.T01:exon:4383;Parent=MsG0680030566.01.T01
Chr6 exon 5339373 5339494 5339373 ID=MsG0680030566.01.T01:exon:4384;Parent=MsG0680030566.01.T01
Chr6 exon 5339639 5339691 5339639 ID=MsG0680030566.01.T01:exon:4385;Parent=MsG0680030566.01.T01
Chr6 exon 5340366 5340451 5340366 ID=MsG0680030566.01.T01:exon:4386;Parent=MsG0680030566.01.T01
Chr6 CDS 5338153 5338233 5338153 ID=MsG0680030566.01.T01:cds;Parent=MsG0680030566.01.T01
Chr6 CDS 5339128 5339241 5339128 ID=MsG0680030566.01.T01:cds;Parent=MsG0680030566.01.T01
Chr6 CDS 5339373 5339494 5339373 ID=MsG0680030566.01.T01:cds;Parent=MsG0680030566.01.T01
Chr6 CDS 5339639 5339691 5339639 ID=MsG0680030566.01.T01:cds;Parent=MsG0680030566.01.T01
Chr6 CDS 5340366 5340451 5340366 ID=MsG0680030566.01.T01:cds;Parent=MsG0680030566.01.T01
Gene Sequence

>MsG0680030566.01.T01

ATGTTAAGAGCTCGAATTTGCGAACAGGGTATTTTGTTGAAATGTTACAATGAATTTGGTTATGTTGGTTTTAACATGATTGGTCGTAGATTCGTAGAAGTAGTGAAGATGAGTGCCGGCAAGAAAACTGGTCCCCCCAAACATCAGAACAAGATTGCTTGGAAACCTAATGCTGGTATCAAGATCAATGAAACTGAAGTTGGAGGAAGATTTAGACCTTTATCTGAGATAACTGGAGTGTGCCCTCGCTGTAAGGAACAAATTGATTGGAAACGACGTTATGGAAAATACAAGCCTCTTCATGAACCTGCCAAATGTCAAAGATGTTCAAAGCGTAATGTTCGCCAAGCTTACCATAATTTGTGTTTTGGTTGTGCGAAGGAGCATCGTGTTTGTGCAAAATGTTGTTGCCGTGTGGAGCGTATAGTTGGAAGGTTGTTTTTCATATTTTACTAG
Protein sequence

>MsG0680030566.01.T01

MLRARICEQGILLKCYNEFGYVGFNMIGRRFVEVVKMSAGKKTGPPKHQNKIAWKPNAGIKINETEVGGRFRPLSEITGVCPRCKEQIDWKRRYGKYKPLHEPAKCQRCSKRNVRQAYHNLCFGCAKEHRVCAKCCCRVERIVGRLFFIFY*